Citrus Sinensis ID: 047339

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIHTSQKVTRDLGR
Secondary Structure (PSIPRED)
cccccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccEEEEEcHHHHHHHHHccccHHHHcccccccEEEEEEcccccEEEEEccccccccccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccEHHHHHHHHHHHHcccEEEEEccccHHcHccHHEEccHHHHHHHHHcccHHHHHHHccccccEEEEEcccccccEEEccccccccccccEEEEEEEEccccc
Coil and Loop (DISEMBL)
METVEKDVVIIGAGIAGLATALALKRlgikplvleksdglrgtgaainfAPNAWLALDALGVShklasiydpVKRLFVTnlrtgatqetslagksengsgsqihtsqKVTRDLGR
Flexible Loop (DISEMBL)
METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGATQEtslagksengsgsqihtsqkvtrdlgr
Low Complexity Region (SEG)
METVEKDVViigagiaglatalalKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIHTSQKVTRDLGR
Disordered region (IsUnstruct)
******DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRT********************************
Disordered Region (DISOPRED)
****EKD**IIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIHTSQKVTRD***
Disordered Region (DISEMBL)
METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGATQET**************************
Disordered Region (DISPRO)
****EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIHTSQKVTR****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIHTSQKVTRDLGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q9F131	394	3-hydroxybenzoate 6-hydro	N/A	no	0.513	0.149	0.508	2e-09
B6D1N4	384	FAD-dependent urate hydro	yes	no	0.660	0.197	0.355	3e-06
A6T923	384	FAD-dependent urate hydro	yes	no	0.660	0.197	0.355	4e-06
Q5EXK1	397	3-hydroxybenzoate 6-hydro	yes	no	0.373	0.108	0.534	0.0001
O66973	510	L-aspartate oxidase OS=Aq	yes	no	0.304	0.068	0.571	0.0003

>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62
          +  +++I GAGI GL+ AL L R G++ +VLEK+  L   GA I  APNA+ ALDALG+
Sbjct: 1  MHNNILIAGAGIGGLSAALGLARKGMRSIVLEKAPELGEIGAGIQLAPNAYHALDALGI 59

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. The affinity of the enzyme toward NAD is twice as high as for NADP. The enzyme shows higher specific activities against the intermediates in the degradation of 2,5-xylenol and 3,5-xylenol, 3-hydroxy-4-methylbenzoate and 3-hydroxy-5-methylbenzoate, respectively, than for 3-hydroxybenzoate. It also shows activity against 3-substituted benzoates.
Pseudomonas alcaligenes (taxid: 43263)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 2EC: 4

>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 44/76 (57%)

Query: 9  VIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLAS 68
          ++IGAGI GL+ A+ALK+ GI   V E    ++  GAAI+  PN    +  LG+   + +
Sbjct: 4  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 69 IYDPVKRLFVTNLRTG 84
             P++R+   + R+G
Sbjct: 64 FGGPLRRMAYRDFRSG 79

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae (taxid: 573)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 44/76 (57%)

Query: 9  VIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLAS 68
          ++IGAGI GL+ A+ALK+ GI   V E    ++  GAAI+  PN    +  LG+   + +
Sbjct: 4  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 69 IYDPVKRLFVTNLRTG 84
             P++R+   + R+G
Sbjct: 64 FGGPLRRMAYRDFRSG 79

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q5EXK1|3HBH_KLEOX 3-hydroxybenzoate 6-hydroxylase OS=Klebsiella oxytoca GN=mhbM PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 20 TALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62
          TAL+L R GIK ++LEK+  +   GA I   PNA+ ALD+LGV
Sbjct: 19 TALSLARQGIKVMLLEKAHEIGEIGAGIQLGPNAFSALDSLGV 61

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. NAD and NADP function equally well.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|O66973|NADB_AQUAE L-aspartate oxidase OS=Aquifex aeolicus (strain VF5) GN=nadB PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 27/35 (77%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
          E  V+I G+GI GLATA++LK LGI+PL+L +  G
Sbjct: 16 EAKVLICGSGIGGLATAISLKELGIEPLILTRGIG 50

Catalyzes the oxidation of L-aspartate to iminoaspartate.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
224056051	404	predicted protein [Populus trichocarpa]	0.730	0.207	0.690	1e-25
255578424	462	monoxygenase, putative [Ricinus communis	0.878	0.218	0.615	2e-25
225431405	411	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.895	0.250	0.575	2e-25
296088642	356	unnamed protein product [Vitis vinifera]	0.817	0.264	0.606	3e-25
359477074	413	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.913	0.254	0.596	4e-25
359477076	408	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.817	0.230	0.606	4e-25
255578420	408	monoxygenase, putative [Ricinus communis	0.791	0.223	0.659	1e-24
224126925	404	predicted protein [Populus trichocarpa]	0.765	0.217	0.662	1e-24
224105749	394	predicted protein [Populus trichocarpa]	0.765	0.223	0.651	1e-24
224105739	390	predicted protein [Populus trichocarpa]	0.730	0.215	0.642	7e-24

>gi|224056051|ref|XP_002298720.1| predicted protein [Populus trichocarpa] gi|222845978|gb|EEE83525.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 71/84 (84%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
          +DVVI+GAGIAGLATA+ALKR+G++ LVLE+S GLR TGAAI+  PNAWLALDALGVSHK
Sbjct: 3  EDVVIVGAGIAGLATAVALKRVGVRALVLERSQGLRSTGAAISLFPNAWLALDALGVSHK 62

Query: 66 LASIYDPVKRLFVTNLRTGATQET 89
          L  IYDP+ ++ VTN+ TG  Q+ 
Sbjct: 63 LTRIYDPLFKVHVTNVSTGDVQQV 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578424|ref|XP_002530077.1| monoxygenase, putative [Ricinus communis] gi|223530430|gb|EEF32317.1| monoxygenase, putative [Ricinus communis]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 75/104 (72%), Gaps = 3/104 (2%)

Query: 1   METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDAL 60
           ME V+ D VI+GAGIAGLATA+ALKR+GI+ L+LE+SDGLR TG+A+   PNAWLALDAL
Sbjct: 52  MEMVQ-DAVIVGAGIAGLATAVALKRVGIQALILERSDGLRATGSALTLFPNAWLALDAL 110

Query: 61  GVSHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIH 104
           GVSH L S Y    R  VTN+ TGA QE S  G   NG    +H
Sbjct: 111 GVSHMLTSFYSSALRGSVTNVATGAVQEISFVGN--NGGPKSVH 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431405|ref|XP_002272608.1| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1 [Vitis vinifera] gi|296088643|emb|CBI37634.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 80/106 (75%), Gaps = 3/106 (2%)

Query: 3   TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62
            +E+++VI+GAGIAGLATA+ALKR+GI+ LVLE+SDGLR +GAA+  APNAWLALDALGV
Sbjct: 5   VLEEEIVIVGAGIAGLATAIALKRVGIRALVLERSDGLRVSGAALTLAPNAWLALDALGV 64

Query: 63  SHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIHTSQK 108
           +HKL  +Y   +++ +TN+ TGA QE SL     N  G  I   +K
Sbjct: 65  AHKLTPLYAVREKMCITNVATGAVQEVSLI---RNNRGGPITVHRK 107

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088642|emb|CBI37633.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 76/94 (80%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSH 64
           E+++VI+G GIAGLATA+AL+R+GI+ LVLE+SDGLR TGAA+   PNAW ALDALGV+H
Sbjct: 25  EEEIVIVGGGIAGLATAVALQRVGIRALVLERSDGLRATGAALGLFPNAWRALDALGVAH 84

Query: 65  KLASIYDPVKRLFVTNLRTGATQETSLAGKSENG 98
           KL ++Y   K+ +VT++ TGA QE SL G + +G
Sbjct: 85  KLTAVYAVRKKAYVTDVATGAVQEVSLMGNNSDG 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477074|ref|XP_002272352.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera] gi|296088638|emb|CBI37629.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 80/109 (73%), Gaps = 4/109 (3%)

Query: 1   METV-EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDA 59
           ME + E++VVI+GAGIAGLATA+ALKR+GI+ LVLE+SD LR TGAA+   PNAW ALDA
Sbjct: 1   MERIAEEEVVIVGAGIAGLATAVALKRVGIRALVLERSDCLRATGAALTLFPNAWRALDA 60

Query: 60  LGVSHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIHTSQK 108
           LGVSHKL  +Y   ++ +VTN+ TGA QE SL   S N  G  I   +K
Sbjct: 61  LGVSHKLTPLYAVREKSYVTNVTTGAIQEVSL---SRNNRGGPITVHRK 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477076|ref|XP_002272571.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase-like [Vitis vinifera]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 76/94 (80%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSH 64
          E+++VI+G GIAGLATA+AL+R+GI+ LVLE+SDGLR TGAA+   PNAW ALDALGV+H
Sbjct: 4  EEEIVIVGGGIAGLATAVALQRVGIRALVLERSDGLRATGAALGLFPNAWRALDALGVAH 63

Query: 65 KLASIYDPVKRLFVTNLRTGATQETSLAGKSENG 98
          KL ++Y   K+ +VT++ TGA QE SL G + +G
Sbjct: 64 KLTAVYAVRKKAYVTDVATGAVQEVSLMGNNSDG 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578420|ref|XP_002530075.1| monoxygenase, putative [Ricinus communis] gi|223530428|gb|EEF32315.1| monoxygenase, putative [Ricinus communis]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 70/91 (76%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
          +D VI+GAGIAGLATA+ALKR+GI+ LVLE+SD LR TGAA+   PNAWLALDALGVSHK
Sbjct: 2  EDAVIVGAGIAGLATAVALKRVGIRALVLERSDTLRTTGAALTLFPNAWLALDALGVSHK 61

Query: 66 LASIYDPVKRLFVTNLRTGATQETSLAGKSE 96
          L S+Y P+    VT + TGA QE S A   E
Sbjct: 62 LTSLYSPISGGSVTKVDTGAVQEISFAANIE 92

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126925|ref|XP_002329507.1| predicted protein [Populus trichocarpa] gi|222870187|gb|EEF07318.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDAL 60
          ME +E DVVI+GAGIAGLATA+ALKR+G++ LVLEKS+GLR TG A+   PNAWLALDAL
Sbjct: 1  MELME-DVVIVGAGIAGLATAVALKRVGVRALVLEKSEGLRSTGTALTLTPNAWLALDAL 59

Query: 61 GVSHKLASIYDPVKRLFVTNLRTGATQET 89
          GVSHKL  +Y P  + +VTN+ TG  QE 
Sbjct: 60 GVSHKLIPLYTPSFKGYVTNVSTGEVQEV 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105749|ref|XP_002333774.1| predicted protein [Populus trichocarpa] gi|222838458|gb|EEE76823.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDAL 60
          ME +E DVVI+GAGIAGLATA+ALKR+G++ LVLEKS+GLR TG A+   PNAW+ALDAL
Sbjct: 1  MELME-DVVIVGAGIAGLATAVALKRVGVRALVLEKSEGLRSTGTALTLTPNAWVALDAL 59

Query: 61 GVSHKLASIYDPVKRLFVTNLRTGATQET 89
          GVSHKL  +Y P  + +VTN+ TG  QE 
Sbjct: 60 GVSHKLIPLYTPSPKGYVTNVSTGEVQEV 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105739|ref|XP_002333772.1| predicted protein [Populus trichocarpa] gi|222838456|gb|EEE76821.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 69/84 (82%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
          +DVVI+GAGIAGLATA+ALKR+G++ LVLE+S+GLR TG A+  +PNAWLALDALGVSHK
Sbjct: 2  EDVVIVGAGIAGLATAVALKRVGVRALVLERSEGLRATGTALTLSPNAWLALDALGVSHK 61

Query: 66 LASIYDPVKRLFVTNLRTGATQET 89
          L  +Y P  + +VTN+ TG  +E 
Sbjct: 62 LIPLYTPSPKGYVTNVSTGEVREV 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2121254	407	AT4G38540 "AT4G38540" [Arabido	0.782	0.221	0.333	3e-07
TAIR|locus:2153499	406	AT5G05320 "AT5G05320" [Arabido	0.791	0.224	0.318	4.9e-07
TAIR|locus:2130694	422	MO1 "monooxygenase 1" [Arabido	0.478	0.130	0.379	0.00026
TAIR|locus:2060584	427	CTF2B "AT2G29720" [Arabidopsis	0.539	0.145	0.322	0.00072

TAIR|locus:2121254 AT4G38540 "AT4G38540" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 30/90 (33%), Positives = 44/90 (48%)

Query:     7 DVVXXXXXXXXXXXXXXXKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL 66
             D++                RLGI+ +VLE S+ LR TG A     NAW A++ALGVS  +
Sbjct:     8 DIIIVGAGISGLSTAVGLHRLGIRSMVLESSETLRATGFAFTTWFNAWKAMEALGVSQHI 67

Query:    67 ASIYDPVKRLFVTNLRTGATQETSLAGKSE 96
              S++D ++   V  +  G      L  +SE
Sbjct:    68 RSLHDRLEGWVVGTISAGTPPTEMLFPESE 97

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2153499 AT5G05320 "AT5G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 29/91 (31%), Positives = 46/91 (50%)

Query:     6 KDVVXXXXXXXXXXXXXXXKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
             +D++                RLGI+ +VLE S+ LR TG A++   NAW A++ALG+S  
Sbjct:     7 QDIIIVGAGISGLATALGLHRLGIRSIVLESSEQLRATGFALSLYFNAWKAMEALGISQH 66

Query:    66 LASIYDPVKRLFVTNLRTGATQETSLAGKSE 96
             + S+ D  +   V  +  G   +  L  +SE
Sbjct:    67 IRSLGDRFQGWVVRPISAGDPPKEMLFPESE 97

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2130694 MO1 "monooxygenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query:    26 RLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL---ASIYDPVKRLFVTN 80
             R GIK +VLE+++ +R  GA I    N W ALD LGV  +L   +S+    + + + N
Sbjct:    49 RKGIKSVVLERAEKVRSEGAGIGTLSNGWRALDQLGVGDRLRLNSSLIHKARTMLIEN 106

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00072, P = 0.00072
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query:     5 EKDVVXXXXXXXXXXXXXXXKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSH 64
             E+ VV                RLGI+ +VLE+++ LR  GA++  + N W  LDA+ +  
Sbjct:    42 EEKVVIVGGGIGGLATAVALHRLGIRSVVLEQAESLRTGGASLTLSKNGWRVLDAISIGP 101

Query:    65 KL 66
             +L
Sbjct:   102 QL 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.131   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      115       100   0.00091  102 3  11 23  0.44    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  98 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.68u 0.22s 9.90t   Elapsed:  00:00:00
  Total cpu time:  9.68u 0.22s 9.90t   Elapsed:  00:00:00
  Start:  Sat May 11 04:45:31 2013   End:  Sat May 11 04:45:31 2013

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	2e-16
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	5e-16
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	3e-13
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	1e-10
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	2e-10
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	6e-09
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-08
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	5e-08
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	5e-08
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	6e-08
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	6e-08
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	9e-08
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	9e-08
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	1e-07
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	1e-07
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	3e-07
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	4e-07
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	5e-07
PRK12844	557	PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrog	6e-07
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	7e-07
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	2e-06
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	2e-06
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	3e-06
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	3e-06
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	3e-06
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	4e-06
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	4e-06
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	6e-06
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	7e-06
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	9e-06
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	9e-06
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	1e-05
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	1e-05
PRK06069	577	PRK06069, sdhA, succinate dehydrogenase flavoprote	1e-05
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-05
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	2e-05
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	2e-05
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	3e-05
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	4e-05
PRK05868	372	PRK05868, PRK05868, hypothetical protein; Validate	4e-05
PRK07804	541	PRK07804, PRK07804, L-aspartate oxidase; Provision	5e-05
TIGR01813	439	TIGR01813, flavo_cyto_c, flavocytochrome c	5e-05
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	5e-05
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	5e-05
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	6e-05
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	6e-05
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	6e-05
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	7e-05
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	7e-05
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	8e-05
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	9e-05
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	1e-04
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	1e-04
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	1e-04
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-04
PRK08274	466	PRK08274, PRK08274, tricarballylate dehydrogenase;	1e-04
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	1e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-04
PRK07588	391	PRK07588, PRK07588, hypothetical protein; Provisio	2e-04
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	2e-04
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	2e-04
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	2e-04
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	2e-04
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	3e-04
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	3e-04
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	3e-04
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	3e-04
COG0445	621	COG0445, GidA, Flavin-dependent tRNA uridine 5-car	3e-04
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	3e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	3e-04
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	4e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	5e-04
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	5e-04
TIGR00031	377	TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mu	5e-04
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	6e-04
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	6e-04
PRK07121	492	PRK07121, PRK07121, hypothetical protein; Validate	6e-04
TIGR00136	617	TIGR00136, gidA, glucose-inhibited division protei	7e-04
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	8e-04
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	8e-04
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	8e-04
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	9e-04
pfam01946	229	pfam01946, Thi4, Thi4 family	0.001
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	0.001
PLN03000	881	PLN03000, PLN03000, amine oxidase	0.001
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	0.001
PRK08626	657	PRK08626, PRK08626, fumarate reductase flavoprotei	0.001
PLN02927	668	PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa	0.001
PRK06854	608	PRK06854, PRK06854, adenylylsulfate reductase subu	0.002
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	0.002
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	0.002
PRK06481	506	PRK06481, PRK06481, fumarate reductase flavoprotei	0.002
PRK07843	557	PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrog	0.002
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	0.002
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	0.002
PRK12839	572	PRK12839, PRK12839, hypothetical protein; Provisio	0.002
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.003
TIGR03378	419	TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate d	0.003
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	0.003
TIGR01377	380	TIGR01377, soxA_mon, sarcosine oxidase, monomeric	0.004
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	0.004
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	0.004
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	0.004
TIGR01372	985	TIGR01372, soxA, sarcosine oxidase, alpha subunit	0.004
PRK12835	584	PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrog	0.004
PLN02676	487	PLN02676, PLN02676, polyamine oxidase	0.004

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
          V+I+G GI GLA ALAL R GIK  +LE++  +   GA I   PNA+ ALDALGV   
Sbjct: 7  VLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEA 64

Length = 396

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 71.7 bits (176), Expect = 5e-16
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLRGTGAAINFAPNAWLALDALGVSHK 65
          DV I+GAG AGLA ALAL R G+   +LE++   L   G  I  +PNA  AL+ LG+  +
Sbjct: 4  DVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR 63

Query: 66 LAS 68
          L +
Sbjct: 64 LEA 66

Length = 387

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL 66
           V+I G GI GL  AL L + GI+ +V E +  LR  G  IN  P+A   L  LG+   L
Sbjct: 2  KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDAL 61

Query: 67 ASI 69
           +I
Sbjct: 62 DAI 64

Length = 413

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDAL 60
          M  V+K V+I+G GI GL+ A+AL+R GI   ++E     R  GA I    NA  AL  L
Sbjct: 1  MAAVKK-VLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL 59

Query: 61 GV 62
          GV
Sbjct: 60 GV 61

Length = 375

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63
               +I GAG+AGL+ AL L   G    ++EK+  L   GA +  APNA   L+ LGV+
Sbjct: 1  TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVA 60

Query: 64 HKLASI 69
           +L+  
Sbjct: 61 DRLSGT 66

Length = 400

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          E DVVI+GAG AG + A  L + G+  LVLEK  
Sbjct: 3  EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGS 36

Length = 396

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          DVV+IG GI GL+TA  L R G+   +LE+ D   G 
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGA 37

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGT 43
           DV IIGAG +GLA A ALK+ G+   ++ EK D + GT
Sbjct: 9  TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT 47

Length = 443

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 22/58 (37%), Positives = 27/58 (46%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALD 58
          M   E DVV+IG G AGL  A+     G+K  +L K+   RG   A     NA L   
Sbjct: 2  MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNT 59

Length = 562

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46
            DVV+IGAG+ GLA A  L R G+K  VLEK+D  R  G A
Sbjct: 3  MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND--RVGGRA 42

Length = 487

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLA 67
          + IIGAGI GL  A  L+  G +  V EK++ ++  GA I    N    +  LG  H LA
Sbjct: 3  IAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDN---VIKKLGN-HDLA 58

Length = 373

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 48.4 bits (115), Expect = 9e-08
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          + DVVIIG GI GL+ A  L   G    VLE  +   G 
Sbjct: 4  KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA 42

Length = 387

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 48.3 bits (116), Expect = 9e-08
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 2   ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFA 50
               +D  IIG GIAG A ALAL R G +  + E  +     GA+ N  
Sbjct: 257 SPKARDAAIIGGGIAGAALALALARRGWQVTLYEADEAP-AQGASGNRQ 304

Length = 662

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          K VVIIGAG AGL  A  L + G    VLE   
Sbjct: 5  KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37

Length = 479

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKS 37
          DV+IIGAG  GLA A+  ++ G+  L++EK 
Sbjct: 1  DVIIIGAGPCGLACAIEAQKAGLSYLIIEKG 31

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFA 50
          + I+G GIAGLA A  L + G +  V E  D L G  A+  F 
Sbjct: 2  IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFG 44

Length = 434

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          DVV+IG+G+AGLA AL     G+K  V+EK     G 
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGA 37

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          DV+IIG G AGL  A+   R G+K +++ +     G
Sbjct: 5  DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG 40

Length = 305

>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA---AINFAPNAWLALDAL 60
             DVV++G+G  G+  ALA    G++PL++EK D + G+ A    + + PN  L   A 
Sbjct: 5  ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAA- 63

Query: 61 GV--SHKLASIY 70
          GV  SH+ A  Y
Sbjct: 64 GVPDSHEDALAY 75

Length = 557

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 45.6 bits (109), Expect = 7e-07
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA-AINFAPNAWLALDALGV 62
          VV++GAG  GLA A+ L + G+  ++L+  D L  TG+ AI FA  +    D LG 
Sbjct: 26 VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL-STGSRAICFAKRSLEIFDRLGC 80

Length = 547

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
             +  DV++IG+G  GL+ A+  ++LG+  +VLEK     GT A
Sbjct: 5  TNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49

Length = 574

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 41.7 bits (99), Expect = 2e-06
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 10 IIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          I+GAG++GL  A  L + G   LVLEK D + G
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGG 33

Length = 66

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47
          DVVIIG G AGLA A+ L RLG+K  ++E+  G       +
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCL 41

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 7  DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLR-----GTGAAINFAPNAWLALDAL 60
          D+VI+G G  GLA ALAL R G +K  ++E +                 +  +   L+ L
Sbjct: 1  DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSALSAASIRLLEKL 60

Query: 61 GVSHKLASI-YDPVKRLFVTNLRTGAT 86
          GV  K+      P++ + V++  +   
Sbjct: 61 GVWDKIEPARAQPIRDIHVSDGGSFGA 87

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 2   ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN 48
             V K V++IG G+AG+  AL L  +G K  ++EK   + G  A +N
Sbjct: 121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167

Length = 622

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 7  DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40
          D VIIG GI GL+TA+ L+    G +  VLEK  G 
Sbjct: 4  DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39

Length = 393

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEK 36
           VVIIGAG AGL+ +  LK+ GI  +VLEK
Sbjct: 2  PVVIIGAGQAGLSVSYYLKQAGIDHVVLEK 31

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
           + I+GAGIAGLA A AL+  G +  V EK  G+ G  A
Sbjct: 3  SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA 41

Length = 331

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGL--------RGTG-AAINFAPN 52
          + DVVIIG GI G ATA  L          +LEK DG+         G   A + + P 
Sbjct: 3  DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPG 61

Length = 429

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47
           V+IGAG  GLA A+ L   GI   V+E+ D   G    +
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVL 40

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 22/39 (56%), Positives = 26/39 (66%)

Query: 8   VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46
           VVI GAG+AGL+TA  L   G KP++LE  D L G  AA
Sbjct: 96  VVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAA 134

Length = 567

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKS 37
          D+V++GAG AGL+ A +L   G+K  ++E+ 
Sbjct: 5  DIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35

Length = 392

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46
          DVV++G G AG+A A+A  RLG K L++E+   L G   +
Sbjct: 1  DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGGMATS 40

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 17/71 (23%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPL---VLEKSDGLR--------GTGAAI-- 47
          ME ++ DVVI+G+G+AGL  A+A        L   V+ K+  +R        GT A +  
Sbjct: 1  MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYP 60

Query: 48 ----NFAPNAW 54
              +F  +A+
Sbjct: 61 EKGDSFDLHAY 71

Length = 577

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
             E DVV+IGAG AG   A+   +LG+K  ++EK + L GT
Sbjct: 1  MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT 42

Length = 454

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSD 38
            + IIG GIAGL+ A  L++ G  ++  + E  D
Sbjct: 1  MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35

Length = 444

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI-NF 49
          D++I+GAGI GLA A A  R G+   V+E+S   R  GA++ NF
Sbjct: 2  DLIIVGAGILGLAHAYAAARRGLSVTVIERSS--RAQGASVRNF 43

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
          DV++IG G+AGL  ALA    G +  ++ K  G
Sbjct: 4  DVLVIGGGLAGLTAALAAAEAGKRVALVAKGQG 36

Length = 422

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41
          DVV++GAG AG + A  L   G++ L+LEK    R
Sbjct: 2  DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62
          K VV+ GA +AG A A  L R G    ++E+  GLR  G AI+    A   L+ +G+
Sbjct: 2  KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGL 58

Length = 372

>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 3  TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
              DVV++G+G+AGL  ALA +R G + LV+ K+ 
Sbjct: 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49

Length = 541

>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKP-LVLEK 36
          DVV++G+G AGL+ AL+ K+ G    ++LEK
Sbjct: 1  DVVVVGSGFAGLSAALSAKKAGAANVVLLEK 31

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton [Energy metabolism, Electron transport]. Length = 439

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
           DV+IIG+G+AGL  AL+L     +  VL K  
Sbjct: 8  PDVLIIGSGLAGLTAALSLAP-SFRVTVLTKGP 39

Length = 518

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          DV+IIGAG AGL  A+   R  +KPL++E  +
Sbjct: 1  DVIIIGAGPAGLTAAIYAARANLKPLLIEGGE 32

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
           K V +IGAG AGLA A  L R G    V E+ +   G 
Sbjct: 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV 577

Length = 1019

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          V++IG GIAG+A A AL     K  +LE  D + G
Sbjct: 3  VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37

Length = 435

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 20/39 (51%), Positives = 23/39 (58%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46
          V I GAG+AGL+ A  L   G  P+VLE  D L G  AA
Sbjct: 2  VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          DV++IGAG AG++ AL     G+K L++E+++ + GT A
Sbjct: 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56

Length = 578

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)

Query: 7  DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGTGAA--------INFAPNAWLAL 57
          DV+I+G G+ GL+ ALAL RLG IK  ++E +       AA        +  +  +   L
Sbjct: 1  DVIIVGGGLVGLSLALALSRLGKIKIALIEANS----PSAAQPGFDARSLALSYGSKQIL 56

Query: 58 DALGVSHKLASIYDPVKRLFVT-NLRTGATQ 87
          + LG+  KLA    P+  + V+     GAT 
Sbjct: 57 EKLGLWPKLAPFATPILDIHVSDQGHFGATH 87

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          E DV++IG+G AGL+ A+     G+K +V+EK     GT A
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52

Length = 581

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSH 64
          E DV+I+G G AGL  AL L R G++ +++E+         A          L   G+  
Sbjct: 1  ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLED 60

Query: 65 KLAS 68
          ++ +
Sbjct: 61 RILA 64

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD--GLRGTGA 45
           DV+I+GAG+AGL+ A  LK+ G +  +LE  D  G R   A
Sbjct: 8  ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTA 49

Length = 450

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 26/56 (46%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62
          DV+I+GAG  GL  A+ L R G+   ++EK+             P      D LGV
Sbjct: 5  DVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGV 60

Length = 502

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 8  VVIIGAGIAGLATALAL-KRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL 66
          V IIG GIAG+A AL L K   +   + E +      GA ++F  NA  A+  LG+    
Sbjct: 3  VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAY 62

Query: 67 ASIYDPV 73
            + D  
Sbjct: 63 TQVADST 69

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFA 50
           KDVV++GAG  GL  A A  + G K  ++E +D L G       A
Sbjct: 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVA 181

Length = 415

>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD-GLRG 42
          DV++IG G A L  ALA +  G   L+LE +    RG
Sbjct: 6  DVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRG 42

Length = 466

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 2   ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLE 35
           E  E  V+I+GAG+AGLA A  L   G K +VLE
Sbjct: 157 EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLE 190

Length = 738

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          ME    DV++IGAG AG   A    +LG K  ++EK
Sbjct: 1  MEKY--DVIVIGAGPAGYVAARRAAKLGKKVALIEK 34

Length = 460

>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINF 49
            V I GAGIAG   A  L+R G +P ++E++  LR  G  ++F
Sbjct: 1  MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDF 44

Length = 391

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
          M T   DVVIIGAG  GL  A   +  G+  ++++KSDG
Sbjct: 1  MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39

Length = 487

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD---GL 40
           K V ++G+G AGLA A  L R G K  V E++D   GL
Sbjct: 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGL 181

Length = 471

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 15 IAGLATALALKRLGIKPLVLEKSDGLRG 42
          +AGLA A  L R G    VLE  D + G
Sbjct: 1  LAGLAAARELLRAGFDVTVLEARDRVGG 28

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
            T E  V+I+G G  GLA AL L R G+  +++E+ DG
Sbjct: 3  ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41

Length = 545

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLRG 42
          K V IIG GI GL+ A  L + G      +LE SD L G
Sbjct: 1  KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39

Length = 451

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 7  DVVIIGAGIAGLATALALKRLGIK 30
          DV++IG G AG   ALA  R+G K
Sbjct: 1  DVIVIGGGHAGCEAALAAARMGAK 24

Length = 391

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47
            V I GAG+AGLA A  L   G    + E  D L G  A+ 
Sbjct: 1  MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42

Length = 485

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLE 35
          DV I+G GI GL  A ALK  G++  ++E
Sbjct: 20 DVAIVGGGIVGLTLAAALKDSGLRIALIE 48

Length = 415

>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVL 34
          DV++IG G AG+  ALA  R+G K L+L
Sbjct: 6  DVIVIGGGHAGVEAALAAARMGAKTLLL 33

Length = 621

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          ++ +E DV I+GAG +GL  A  L + G+K  V E+     G
Sbjct: 21 LDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 7  DVVIIGAGIAGLATALALK--RLGIKPLVLEKSDGLRGTG 44
          D+VI+GAG+AGL  AL L+  R G++ L+++   G     
Sbjct: 1  DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPN 40

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLR 41
           E    D  I+G G AG+   L L R G+   VLEK  D LR
Sbjct: 2  AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR 43

Length = 407

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 1   METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40
           ++ + K + +IG G+ GL    AL RLG+K  V E+ D +
Sbjct: 165 LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204

Length = 460

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 2  ETVEKDVVIIGAGIAGLATALALK-RLGIKPLVLEKSD 38
              KDV ++GAG++GLA A AL  + G+  LV E  D
Sbjct: 9  AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD 46

Length = 496

>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          D +I+GAG++G+  A  L +L  + LV+EK + + G
Sbjct: 3  DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38

This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 377

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          D ++IG+GI GL TA  L   G K LVLE+
Sbjct: 2  DAIVIGSGIGGLVTATQLAVKGAKVLVLER 31

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          +   E DV++IG GI G   A      G+K  ++EK D
Sbjct: 8  LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGD 45

Length = 532

>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          E DVV++G G AG   A+     G + LVLE++ G  G  A
Sbjct: 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60

Length = 492

>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVL 34
          DV++IG G AG   ALA  R+G K L+L
Sbjct: 2  DVIVIGGGHAGCEAALAAARMGAKTLLL 29

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137) [Protein synthesis, tRNA and rRNA base modification]. Length = 617

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLE 35
          E  VV+IGAGIAGL  A  L + G +  +LE
Sbjct: 1  ETSVVVIGAGIAGLTAAALLAKRGYRVTLLE 31

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          D+ +IG G AGLA AL L R G++  ++E    + G 
Sbjct: 1  DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLE 35
          DVV++G G+ G + ALAL + G++  +L 
Sbjct: 7  DVVVVGGGLVGASLALALAQSGLRVALLA 35

Length = 388

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 4   VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36
            +K V IIGAG AGLA A  L R G+   V ++
Sbjct: 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDR 358

Length = 654

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37
           E DVVI+GAG +GL  A  L + G+K  ++E+S
Sbjct: 16 AESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERS 49

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKS 37
          DV+I+G  IAG   A AL + G K L+LE+ 
Sbjct: 35 DVIIVGGSIAGPVLAKALSKQGRKVLMLERD 65

Length = 567

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 2   ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLE 35
           ++ +  VVI+GAG++GLA A  L R G K  VLE
Sbjct: 181 QSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLE 214

Length = 881

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLG 28
          ME    D+ +IG G AGLA A+AL R G
Sbjct: 3  MEKEHTDIAVIGGGPAGLAAAIALARAG 30

Length = 388

>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit; Provisional

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVL 34
          M+ +  D ++IGAG+AGL  A+A  + G+  +VL
Sbjct: 1  MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVL 34

Length = 657

>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 8   VVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLRGTG---AAINFAPNAWLALDALGV 62
           V++ G GI GL  ALA K+ G   LV EK    +RG G     I    NA  AL+A+ +
Sbjct: 84  VLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDI 142

Length = 668

>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha; Validated

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 11/58 (18%)

Query: 1  METVEK--DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGA------AIN 48
           E VE   D++IIG G+AG   A   K     +K L++EK++  R +GA      AIN
Sbjct: 5  PEVVEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR-SGAVAQGLSAIN 61

Length = 608

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEK 36
           DV++IG G AGL  A++  + G + L+++K
Sbjct: 1  YDVIVIGGGAAGLMAAISAAKRGRRVLLIDK 31

Length = 405

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLE 35
            ++ DV+++GAG+AGL  A  L   G + L+L+
Sbjct: 1  MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLD 34

Length = 549

>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit; Validated

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 15/30 (50%), Positives = 23/30 (76%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          D+VI+GAG AG++ A+  K  G+ P++LEK
Sbjct: 63 DIVIVGAGGAGMSAAIEAKDAGMNPVILEK 92

Length = 506

>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37
          M   E DVV++G+G AG+  AL     G+  +V+EK+
Sbjct: 3  MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKA 39

Length = 557

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40
          DVVI+GAG  GL  A  L + G++ LVLE+   L
Sbjct: 12 DVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45

Length = 500

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 21/92 (22%)

Query: 6  KDVVIIGAGIAGLATALALKR----LGIKPLVLEKSDGLRGT-------GAAINFAPNAW 54
          K VVIIG GI+GL  A  L++    L ++  ++E SD + G        G  I   P+++
Sbjct: 3  KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSF 62

Query: 55 LA--------LDALGVSHKLASIYDPVKRLFV 78
          L         +  LG+ H L S  D   + +V
Sbjct: 63 LERKKSAPDLVKDLGLEHVLVS--DATGQRYV 92

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 3  TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          T   DVV++G+G  GL+ A+A    G K LV+EK+    G  A
Sbjct: 6  THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48

Length = 572

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37
          ++  E DV+I+GAG +GL  A  L + G+K  VLE+S
Sbjct: 17 LDYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERS 53

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVL 34
          DV+IIG G+AGL+ AL L   G K  ++
Sbjct: 2  DVIIIGGGLAGLSCALRLAEAGKKCAII 29

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase [Energy metabolism, Anaerobic]. Length = 419

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 13/80 (16%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAW---LALDAL-G 61
          + V +IGAG AGL  A  L+R G   +V E+    +  G    + P +    L+LD    
Sbjct: 11 QHVAVIGAGAAGLVAARELRREGHTVVVFERE---KQVGGLWVYTPKSESDPLSLDPTRS 67

Query: 62 VSHKLASIYDPVKRLFVTNL 81
          + H  +S+Y+ ++    TNL
Sbjct: 68 IVH--SSVYESLR----TNL 81

Length = 461

>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          DV+++GAGI G   A  L + G K L+LE+ D     G+
Sbjct: 2  DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGS 40

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 380

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 2   ETVEK-DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
           E VE  +VV++GAG+AGL  A  L  +G K +VLE   
Sbjct: 234 EGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271

Length = 808

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
           D +I+GAG++G   A    +LG + L++EK + + G
Sbjct: 2  FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38

Length = 374

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 1   METVEKDVVIIGAGIAGLATALALKRLGIKPLVL-----EKSDGLRGTGAAINFAPN 52
             T+   VV+IGAG  GL     LK LG K ++      EK    R  GA     P 
Sbjct: 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPK 212

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 7   DVVIIGAGIAGLATALALKRLGIKPLVL----EKSDGLRGTGAAINFAPNA-WLA 56
           DV+++GAG AGLA ALA  R G + +++    E    L      I+  P A W A
Sbjct: 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAA 219

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 985

>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEK------SDGLRGTGAAINFAP 51
          E DV+++G+G  G+  AL     G+  LV+EK      S  L G G  +  AP
Sbjct: 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAP 63

Length = 584

>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGTGAAINFA 50
           V+I+GAG++G++ A  L   GI+  L+LE +D + G     NFA
Sbjct: 28 SVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA 72

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
PRK08163	396	salicylate hydroxylase; Provisional	99.73
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.71
PRK07538	413	hypothetical protein; Provisional	99.69
PRK08244	493	hypothetical protein; Provisional	99.69
PRK07045	388	putative monooxygenase; Reviewed	99.69
PRK06126	545	hypothetical protein; Provisional	99.68
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.68
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.68
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.68
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.67
PRK06185	407	hypothetical protein; Provisional	99.67
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.67
PRK07190	487	hypothetical protein; Provisional	99.67
PRK06475	400	salicylate hydroxylase; Provisional	99.66
PRK06753	373	hypothetical protein; Provisional	99.66
PRK06847	375	hypothetical protein; Provisional	99.65
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.65
PRK06184	502	hypothetical protein; Provisional	99.65
PRK07588	391	hypothetical protein; Provisional	99.64
PRK08294	634	phenol 2-monooxygenase; Provisional	99.64
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.64
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.64
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.64
PRK09126	392	hypothetical protein; Provisional	99.63
PRK05868	372	hypothetical protein; Validated	99.63
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.63
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.62
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.61
PRK08013	400	oxidoreductase; Provisional	99.61
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.6
PTZ00367	567	squalene epoxidase; Provisional	99.59
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.59
PLN02985	514	squalene monooxygenase	99.59
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.58
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.57
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.57
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.56
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.56
PRK07236	386	hypothetical protein; Provisional	99.55
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.55
PRK06996	398	hypothetical protein; Provisional	99.52
PRK06834	488	hypothetical protein; Provisional	99.52
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.49
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.49
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.42
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.41
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.39
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.37
PRK11445	351	putative oxidoreductase; Provisional	99.35
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.33
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.3
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.29
PRK10157	428	putative oxidoreductase FixC; Provisional	99.28
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.28
PRK10015	429	oxidoreductase; Provisional	99.28
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.23
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.23
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.21
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.21
COG2081	408	Predicted flavoproteins [General function predicti	99.15
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.14
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.13
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.11
PRK07233	434	hypothetical protein; Provisional	99.1
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.08
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.08
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.07
PRK07208	479	hypothetical protein; Provisional	99.07
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.07
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.06
PLN02661	357	Putative thiazole synthesis	99.02
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.01
COG3349	485	Uncharacterized conserved protein [Function unknow	99.01
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	99.0
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.99
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.99
PLN02576	496	protoporphyrinogen oxidase	98.98
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.97
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.97
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.97
PLN02463	447	lycopene beta cyclase	98.97
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.97
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.96
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.95
PRK14694	468	putative mercuric reductase; Provisional	98.95
PLN02612	567	phytoene desaturase	98.95
PRK06370	463	mercuric reductase; Validated	98.94
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.93
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.93
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.93
PLN02487	569	zeta-carotene desaturase	98.93
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.93
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.92
PRK06116	450	glutathione reductase; Validated	98.92
PLN02268	435	probable polyamine oxidase	98.92
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.92
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.91
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.9
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.9
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.89
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.89
PRK13748	561	putative mercuric reductase; Provisional	98.89
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.89
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.89
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.88
PLN02568	539	polyamine oxidase	98.88
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.88
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.87
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.87
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.86
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.86
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.86
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.86
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.85
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.84
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.84
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.84
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.84
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.84
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
TIGR02053	463	MerA mercuric reductase. This model represents the	98.83
PTZ00058	561	glutathione reductase; Provisional	98.83
PLN02697	529	lycopene epsilon cyclase	98.82
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.82
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.82
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.82
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.82
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.82
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.81
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.81
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.81
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.8
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.8
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.8
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.8
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.79
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.79
PRK07121	492	hypothetical protein; Validated	98.79
PRK14727	479	putative mercuric reductase; Provisional	98.78
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.78
PRK08274	466	tricarballylate dehydrogenase; Validated	98.77
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.77
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.76
PRK12831	464	putative oxidoreductase; Provisional	98.76
PLN02852	491	ferredoxin-NADP+ reductase	98.76
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.76
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.76
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.75
PTZ00052	499	thioredoxin reductase; Provisional	98.75
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.75
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.75
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.75
PRK10262	321	thioredoxin reductase; Provisional	98.75
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.74
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.74
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.74
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PRK02106	560	choline dehydrogenase; Validated	98.73
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.72
PLN02507	499	glutathione reductase	98.71
PRK07804	541	L-aspartate oxidase; Provisional	98.71
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.71
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.7
PRK05257	494	malate:quinone oxidoreductase; Validated	98.7
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.69
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.69
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.69
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.68
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.68
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.68
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.68
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.68
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.67
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.67
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.66
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.66
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.66
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.66
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.66
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.65
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.65
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.65
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.65
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.65
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.65
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.65
PRK06175	433	L-aspartate oxidase; Provisional	98.65
PTZ00188	506	adrenodoxin reductase; Provisional	98.65
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.64
COG0579	429	Predicted dehydrogenase [General function predicti	98.64
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.64
PLN02546	558	glutathione reductase	98.64
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.63
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	98.63
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.63
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.63
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.62
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.62
PRK08275	554	putative oxidoreductase; Provisional	98.62
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.61
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.61
PLN02529	738	lysine-specific histone demethylase 1	98.61
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.61
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.6
PLN02676	487	polyamine oxidase	98.6
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.6
PRK08401	466	L-aspartate oxidase; Provisional	98.6
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.6
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.59
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.59
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.59
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.58
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.58
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.58
PLN02815	594	L-aspartate oxidase	98.58
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.58
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.56
PRK07395	553	L-aspartate oxidase; Provisional	98.56
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.56
PRK09077	536	L-aspartate oxidase; Provisional	98.55
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.55
PRK12839	572	hypothetical protein; Provisional	98.55
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.54
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.54
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.53
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.52
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.52
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.5
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.5
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.49
PRK08071	510	L-aspartate oxidase; Provisional	98.46
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.45
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.44
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.44
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.43
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.43
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.42
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.41
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.41
PRK07512	513	L-aspartate oxidase; Provisional	98.39
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.38
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.38
PLN03000	881	amine oxidase	98.37
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.37
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.36
PLN02976	1713	amine oxidase	98.33
PRK13984	604	putative oxidoreductase; Provisional	98.31
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.3
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.3
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.3
COG3573	552	Predicted oxidoreductase [General function predict	98.27
PLN02785	587	Protein HOTHEAD	98.25
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.23
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.23
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.2
PRK07846	451	mycothione reductase; Reviewed	98.18
PRK09897	534	hypothetical protein; Provisional	98.17
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.15
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.15
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.13
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	98.12
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.09
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	98.06
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.04
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.03
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.01
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.01
KOG2853	509	consensus Possible oxidoreductase [General functio	98.0
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.99
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.98
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.94
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.93
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.9
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.89
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.89
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.88
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.87
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.87
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.86
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.85
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.85
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.83
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.82
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.81
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.81
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.79
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.79
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.77
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.77
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.75
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.75
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.74
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.72
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.71
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.71
TIGR02053	463	MerA mercuric reductase. This model represents the	97.7
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.7
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.69
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.69
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.68
KOG2852	380	consensus Possible oxidoreductase [General functio	97.68
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.67
PRK06370	463	mercuric reductase; Validated	97.67
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.64
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.64
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.64
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.63
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.59
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.59
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.58
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.58
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.57
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.57
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.56
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.56
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.55
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.55
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.53
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.53
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.53
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.53
PRK07846	451	mycothione reductase; Reviewed	97.52
PLN02507	499	glutathione reductase	97.52
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.52
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.5
PRK06116	450	glutathione reductase; Validated	97.49
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.49
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.48
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.47
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.46
PTZ00058	561	glutathione reductase; Provisional	97.45
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.44
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.43
PTZ00052	499	thioredoxin reductase; Provisional	97.43
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.43
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.42
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.41
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.41
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.4
PRK13748	561	putative mercuric reductase; Provisional	97.4
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.4
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.38
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.38
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.37
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.37
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.34
PRK14694	468	putative mercuric reductase; Provisional	97.33
PLN02546	558	glutathione reductase	97.32
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.32
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.32
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.31
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.27
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.27
PRK14727	479	putative mercuric reductase; Provisional	97.26
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.23
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.23
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.22
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.22
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.21
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.21
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.2
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.19
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.18
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.12
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	97.11
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.11
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.1
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.1
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.09
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.07
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.07
PRK10669	558	putative cation:proton antiport protein; Provision	97.05
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.04
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.04
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.04
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.03
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.03
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.02
PRK10262	321	thioredoxin reductase; Provisional	97.01
PRK12831	464	putative oxidoreductase; Provisional	97.01
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.01
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.97
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.96
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.96
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.93
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.9
PRK07417	279	arogenate dehydrogenase; Reviewed	96.9
PRK06223	307	malate dehydrogenase; Reviewed	96.89
PRK04148	134	hypothetical protein; Provisional	96.89
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.88
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.88
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.86
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.86
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.83
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.83
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.82
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.82
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.81
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.79
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.78
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.78
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.78
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.78
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.77
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.75
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.74
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.73
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.72
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.72
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.71
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.7
PRK09496	453	trkA potassium transporter peripheral membrane com	96.68
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.67
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.64
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.61
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.61
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.6
PTZ00117	319	malate dehydrogenase; Provisional	96.6
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	96.6
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.59
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.55
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.54
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.53
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.52
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.49
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.49
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.49
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.47
PRK09496	453	trkA potassium transporter peripheral membrane com	96.47
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.46
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.46
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.45
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.43
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.41
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.41
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.4
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.39
PRK08017	256	oxidoreductase; Provisional	96.38
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.37
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.36
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.34
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.33
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.33
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.31
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.31
PLN02602	350	lactate dehydrogenase	96.3
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.3
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.27
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.26
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	96.26
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.25
KOG2755	334	consensus Oxidoreductase [General function predict	96.24
PLN02240	352	UDP-glucose 4-epimerase	96.24
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	96.23
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.23
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.22
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.22
PRK08328	231	hypothetical protein; Provisional	96.21
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.2
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.2
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.2
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.19
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.17
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	96.16
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.15
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.15
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.14
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.13
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.13
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.1
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	96.1
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.09
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.09
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.09
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.09
PRK07326	237	short chain dehydrogenase; Provisional	96.07
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.07
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.06
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.04
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	96.04
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.03
PLN02256	304	arogenate dehydrogenase	96.03
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.02
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.01
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.99
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.98
PRK05442	326	malate dehydrogenase; Provisional	95.98
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	95.98
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.98
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.98
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	95.97
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.96
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.96
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.95
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.93

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.73  E-value=5.6e-17  Score=112.45  Aligned_cols=91  Identities=36%  Similarity=0.473  Sum_probs=77.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      |. ++.||+|||||++|+++|+.|++.|++|+|+|+.+.+...+.++.+.+++.++|+.+|+.+.+.+.....+...+++
T Consensus         1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   79 (396)
T PRK08163          1 MT-KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD   79 (396)
T ss_pred             CC-CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence            53 67899999999999999999999999999999998877788899999999999999999999888777777777776


Q ss_pred             CCCCee-EEeecC
Q 047339           81 LRTGAT-QETSLA   92 (115)
Q Consensus        81 ~~~~~~-~~~~~~   92 (115)
                      ..++.. ..+++.
T Consensus        80 ~~~~~~~~~~~~~   92 (396)
T PRK08163         80 AVDAEEVVRIPTG   92 (396)
T ss_pred             CCCCCEEEEeccc
Confidence            544544 444443

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.71  E-value=3e-16  Score=108.87  Aligned_cols=108  Identities=31%  Similarity=0.388  Sum_probs=80.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC-CCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRT   83 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~   83 (115)
                      .+||+||||||+||++|+.|++.|++|+|+|+. ......++++.+.+++.++|+++|+.+.+.....+......++...
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            579999999999999999999999999999998 4445567999999999999999999778888777666666655333


Q ss_pred             CeeEEeecCCCCCCCCCccccchhHHHhhh
Q 047339           84 GATQETSLAGKSENGSGSQIHTSQKVTRDL  113 (115)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  113 (115)
                      .....++...... ...........+.+.|
T Consensus        82 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L  110 (387)
T COG0654          82 RRLLIFDAAELGR-GALGYVVPRSDLLNAL  110 (387)
T ss_pred             ceeEEecccccCC-CcceEEeEhHHHHHHH
Confidence            2224444443322 3444466666666655

>PRK07538 hypothetical protein; Provisional

Probab=99.69  E-value=5.8e-16  Score=108.15  Aligned_cols=80  Identities=36%  Similarity=0.491  Sum_probs=70.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCCe
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGA   85 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~   85 (115)
                      +||+||||||+||++|+.|+++|++|+|+|+.+.....+.++.+.+++++.|+++|+.+.+.....+.....+++. .++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~-~g~   79 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNR-HGQ   79 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcC-CCC
Confidence            3899999999999999999999999999999988777788899999999999999999998887777777777763 344


Q ss_pred             e
Q 047339           86 T   86 (115)
Q Consensus        86 ~   86 (115)
                      .
T Consensus        80 ~   80 (413)
T PRK07538         80 R   80 (413)
T ss_pred             E
Confidence            3

>PRK08244 hypothetical protein; Provisional

Probab=99.69  E-value=4.1e-16  Score=111.09  Aligned_cols=76  Identities=24%  Similarity=0.311  Sum_probs=68.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEE
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVT   79 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~   79 (115)
                      |++||+||||||+||++|+.|++.|++|+|+|+.+.+...++++.++++++++|+++|+.+.+.+.+.+.....++
T Consensus         1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~   76 (493)
T PRK08244          1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFA   76 (493)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEe
Confidence            4589999999999999999999999999999999887778899999999999999999999998877666665554

>PRK07045 putative monooxygenase; Reviewed

Probab=99.69  E-value=7.9e-16  Score=106.63  Aligned_cols=90  Identities=22%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCC-cceEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDP-VKRLFVT   79 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~-~~~~~~~   79 (115)
                      |.+.++||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.+..+.+++.++|+++|+.+.+.+.... .....++
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   80 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY   80 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence            667789999999999999999999999999999999988755555667999999999999999998876543 3344443


Q ss_pred             ECCCCee-EEeecC
Q 047339           80 NLRTGAT-QETSLA   92 (115)
Q Consensus        80 ~~~~~~~-~~~~~~   92 (115)
                      .  +++. ..+++.
T Consensus        81 ~--~g~~~~~~~~~   92 (388)
T PRK07045         81 H--DKELIASLDYR   92 (388)
T ss_pred             c--CCcEEEEecCC
Confidence            2  3444 445544

>PRK06126 hypothetical protein; Provisional

Probab=99.68  E-value=7.2e-16  Score=110.99  Aligned_cols=73  Identities=32%  Similarity=0.437  Sum_probs=66.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCc
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPV   73 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~   73 (115)
                      |+++++||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+++|+.+.+.+.+.+.
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~   75 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPV   75 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCc
Confidence            5677899999999999999999999999999999999877777888999999999999999999998876543

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.68  E-value=8.7e-16  Score=106.66  Aligned_cols=87  Identities=25%  Similarity=0.252  Sum_probs=71.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      |++||+||||||+|+++|+.|++.|++|+|+|+.+..  ....++..+.+++.++|+++|+.+.+.+.+.+.+...+++ 
T Consensus         1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~-   79 (392)
T PRK08243          1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRF-   79 (392)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEE-
Confidence            3689999999999999999999999999999998753  2334555689999999999999999998888877888776 


Q ss_pred             CCCeeEEeecC
Q 047339           82 RTGATQETSLA   92 (115)
Q Consensus        82 ~~~~~~~~~~~   92 (115)
                       ++....+++.
T Consensus        80 -~g~~~~~~~~   89 (392)
T PRK08243         80 -DGRRHRIDLT   89 (392)
T ss_pred             -CCEEEEeccc
Confidence             3444455554

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.68  E-value=9.2e-16  Score=106.97  Aligned_cols=78  Identities=24%  Similarity=0.385  Sum_probs=68.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC--cceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG--TGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      .++||+||||||+|+++|+.|+++|++|+|+|+.+....  .++++.+.+++.++|+.+|+++.+.+...+.....+++.
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            468999999999999999999999999999999887532  467788999999999999999999887777777777653

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.68  E-value=1.1e-15  Score=110.01  Aligned_cols=86  Identities=29%  Similarity=0.410  Sum_probs=74.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRT   83 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~   83 (115)
                      +.+||+||||||+|+++|+.|+++|++|+|+|+.+.+...++++.++++++++|+.+|+.+.+.+...+.....+++. +
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-~   87 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA-K   87 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC-C
Confidence            468999999999999999999999999999999988777788999999999999999999999887777777777753 4


Q ss_pred             Cee-EEee
Q 047339           84 GAT-QETS   90 (115)
Q Consensus        84 ~~~-~~~~   90 (115)
                      ++. ..++
T Consensus        88 g~~~~~~~   95 (538)
T PRK06183         88 GRCLAEIA   95 (538)
T ss_pred             CCEEEEEc
Confidence            443 4444

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.67  E-value=9.6e-16  Score=105.90  Aligned_cols=77  Identities=21%  Similarity=0.365  Sum_probs=67.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC----CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL----RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~----~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      +||+||||||+|+++|+.|++.|++|+|+|+.+..    ...++++.+++++.++|+.+|+++.+.+...++....+++.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            69999999999999999999999999999987432    22478899999999999999999999887788888888764


Q ss_pred             C
Q 047339           82 R   82 (115)
Q Consensus        82 ~   82 (115)
                      .
T Consensus        82 ~   82 (374)
T PRK06617         82 K   82 (374)
T ss_pred             C
Confidence            4

>PRK06185 hypothetical protein; Provisional

Probab=99.67  E-value=1.2e-15  Score=106.22  Aligned_cols=80  Identities=26%  Similarity=0.354  Sum_probs=67.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhccc-CCcceEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIY-DPVKRLFVT   79 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~-~~~~~~~~~   79 (115)
                      |..+++||+|||||++|+++|+.|++.|++|+|+|+.+......++..+++++.++|+.+|+++.+.+.. .++....++
T Consensus         2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~   81 (407)
T PRK06185          2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE   81 (407)
T ss_pred             CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence            4457899999999999999999999999999999998765445577889999999999999999887643 456666666


Q ss_pred             E
Q 047339           80 N   80 (115)
Q Consensus        80 ~   80 (115)
                      +
T Consensus        82 ~   82 (407)
T PRK06185         82 I   82 (407)
T ss_pred             E
Confidence            4

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.67  E-value=1.9e-15  Score=105.02  Aligned_cols=88  Identities=23%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      |++||+||||||+|+++|+.|+++|++|+|+|+.+..  ....++..+.++++++|+.+|+++.+...+.+.....+++.
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   80 (390)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD   80 (390)
T ss_pred             CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence            4689999999999999999999999999999998753  22334555889999999999999999887777777777652


Q ss_pred             CCCeeEEeecCC
Q 047339           82 RTGATQETSLAG   93 (115)
Q Consensus        82 ~~~~~~~~~~~~   93 (115)
                        +....++++.
T Consensus        81 --~~~~~~~~~~   90 (390)
T TIGR02360        81 --GQRFRIDLKA   90 (390)
T ss_pred             --CEEEEEeccc
Confidence              3345555553

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07190 hypothetical protein; Provisional

Probab=99.67  E-value=1.2e-15  Score=108.64  Aligned_cols=80  Identities=30%  Similarity=0.366  Sum_probs=71.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      |++..+||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+.....++....++.
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~   80 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA   80 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence            77888999999999999999999999999999999998877788899999999999999999999887766665555543

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.66  E-value=1.8e-15  Score=105.37  Aligned_cols=76  Identities=36%  Similarity=0.527  Sum_probs=67.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      .+|+||||||+||++|+.|+++|++|+|+|+.+.....+.++.+.++++++|+.+|+++.+.+.........+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g   78 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDG   78 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecC
Confidence            6899999999999999999999999999999988777888999999999999999999999877666655555543

>PRK06753 hypothetical protein; Provisional

Probab=99.66  E-value=1.7e-15  Score=104.36  Aligned_cols=79  Identities=25%  Similarity=0.386  Sum_probs=70.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCCee
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGAT   86 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~   86 (115)
                      +|+||||||+|+++|+.|+++|++|+|+|+.+.+...+.++.+.+++.+.|+.+|+.+.+.....+.....+++. +++.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~-~g~~   80 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDD-KGTL   80 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcC-CCCE
Confidence            899999999999999999999999999999998777788899999999999999999998887778878888764 3443

>PRK06847 hypothetical protein; Provisional

Probab=99.65  E-value=3.3e-15  Score=102.95  Aligned_cols=84  Identities=33%  Similarity=0.400  Sum_probs=72.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      |+. ..||+||||||+|+++|+.|++.|++|+|+|+.+.+...+.++.+.+++.++|+.+|+.+.+.+...+.....+++
T Consensus         1 m~~-~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (375)
T PRK06847          1 MAA-VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD   79 (375)
T ss_pred             CCC-cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence            554 4799999999999999999999999999999998876778889999999999999999999888777777777775


Q ss_pred             CCCCee
Q 047339           81 LRTGAT   86 (115)
Q Consensus        81 ~~~~~~   86 (115)
                      . +++.
T Consensus        80 ~-~g~~   84 (375)
T PRK06847         80 P-DGTL   84 (375)
T ss_pred             C-CCCE
Confidence            3 3443

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.65  E-value=6e-16  Score=105.07  Aligned_cols=68  Identities=41%  Similarity=0.615  Sum_probs=60.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDP   72 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~   72 (115)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+.....+
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~   68 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSP   68 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhccc
Confidence            47999999999999999999999999999999998877888999999999999999999998876644

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06184 hypothetical protein; Provisional

Probab=99.65  E-value=1.2e-15  Score=108.95  Aligned_cols=76  Identities=25%  Similarity=0.338  Sum_probs=68.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      ++||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+.+...+.....++.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~   78 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR   78 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence            4799999999999999999999999999999998877778889999999999999999999988777766666654

>PRK07588 hypothetical protein; Provisional

Probab=99.64  E-value=4.2e-15  Score=103.12  Aligned_cols=85  Identities=26%  Similarity=0.413  Sum_probs=71.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCCe
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGA   85 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~   85 (115)
                      .||+||||||+|+++|+.|+++|++|+|+|+.+.....+.++.+++++.++|+++|+.+.+...+.+.....+++. ++.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~g~   79 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDP-TGR   79 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcC-CCC
Confidence            3899999999999999999999999999999887665677888999999999999999999888888888888763 344


Q ss_pred             e-EEeec
Q 047339           86 T-QETSL   91 (115)
Q Consensus        86 ~-~~~~~   91 (115)
                      . ..+++
T Consensus        80 ~~~~~~~   86 (391)
T PRK07588         80 RKADLNV   86 (391)
T ss_pred             EEEEecH
Confidence            3 44443

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.64  E-value=1.7e-15  Score=110.76  Aligned_cols=77  Identities=25%  Similarity=0.272  Sum_probs=69.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            5 EKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      ++||+||||||+||++|+.|++ .|++|.|+|+.+.+...+++..+.++++++|+.+|+.+.+.+.+.+.....++..
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~  109 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP  109 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence            6899999999999999999999 5999999999988777788899999999999999999999988888777777753

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.64  E-value=1.3e-15  Score=105.48  Aligned_cols=81  Identities=26%  Similarity=0.363  Sum_probs=69.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      |.+.++||+||||||+|+++|+.|+++|++|+|+|+.+... ..++..+.+++.++|+.+|+++.+.+...++....+++
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~   81 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVD   81 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEe
Confidence            55667899999999999999999999999999999987653 34566778889999999999999988888888888876


Q ss_pred             CC
Q 047339           81 LR   82 (115)
Q Consensus        81 ~~   82 (115)
                      ..
T Consensus        82 ~~   83 (388)
T PRK07494         82 AT   83 (388)
T ss_pred             CC
Confidence            43

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.64  E-value=7.2e-15  Score=105.94  Aligned_cols=77  Identities=29%  Similarity=0.358  Sum_probs=67.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      +++||+||||||+||++|+.|++.|++|+|+|+.+.....+++..++++++++|+.+|+.+.+.+.+.+.....++.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   98 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL   98 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence            56899999999999999999999999999999998877778899999999999999999999887766554444444

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.64  E-value=5.2e-15  Score=102.80  Aligned_cols=77  Identities=34%  Similarity=0.430  Sum_probs=67.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCC--CcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLR--GTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      +||+||||||+|+++|+.|+++|  ++|+|+|+.+...  ..+++..+.+++.++|+.+|+++.+.....+.....+++.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   81 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS   81 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence            79999999999999999999995  9999999987642  3468899999999999999999999888888888888764


Q ss_pred             C
Q 047339           82 R   82 (115)
Q Consensus        82 ~   82 (115)
                      .
T Consensus        82 ~   82 (403)
T PRK07333         82 R   82 (403)
T ss_pred             C
Confidence            4

>PRK09126 hypothetical protein; Provisional

Probab=99.63  E-value=2.1e-15  Score=104.50  Aligned_cols=79  Identities=28%  Similarity=0.369  Sum_probs=64.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-----CcceeeeeCccHHHHHHHcCChHHHhccc-CCcceEE
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-----GTGAAINFAPNAWLALDALGVSHKLASIY-DPVKRLF   77 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~i~~~~-~~~~~~~   77 (115)
                      |++||+||||||+|+++|+.|+++|++|+|+|+.+.+.     ..+.++.+.+++.++|+++|+.+.+.... .+.....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~   81 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK   81 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence            46899999999999999999999999999999987642     24566778899999999999998887654 4555666


Q ss_pred             EEECC
Q 047339           78 VTNLR   82 (115)
Q Consensus        78 ~~~~~   82 (115)
                      +++..
T Consensus        82 ~~~~~   86 (392)
T PRK09126         82 VLNGR   86 (392)
T ss_pred             EEcCC
Confidence            66533

>PRK05868 hypothetical protein; Validated

Probab=99.63  E-value=3.7e-15  Score=103.03  Aligned_cols=80  Identities=29%  Similarity=0.367  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCCe
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGA   85 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~   85 (115)
                      .||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.++.++++++++|+++|+.+.+.....+.....+++. ++.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~-~g~   80 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR-DGN   80 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC-CCC
Confidence            5899999999999999999999999999999988877778889999999999999999999887777878887764 454


Q ss_pred             e
Q 047339           86 T   86 (115)
Q Consensus        86 ~   86 (115)
                      .
T Consensus        81 ~   81 (372)
T PRK05868         81 E   81 (372)
T ss_pred             E
Confidence            3

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.63  E-value=1e-14  Score=101.17  Aligned_cols=79  Identities=30%  Similarity=0.412  Sum_probs=64.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-----CcceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEE
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-----GTGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLF   77 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~   77 (115)
                      +.+||+||||||+|+++|+.|+++|++|+|+|+.+.+.     ...+...+.+++.++|+.+|+++.+.+. ..++....
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR   84 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence            56899999999999999999999999999999986532     1235577889999999999999998763 55666666


Q ss_pred             EEECC
Q 047339           78 VTNLR   82 (115)
Q Consensus        78 ~~~~~   82 (115)
                      +++..
T Consensus        85 ~~~~~   89 (392)
T PRK08773         85 VWDAG   89 (392)
T ss_pred             EEeCC
Confidence            66543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.62  E-value=8.2e-15  Score=101.07  Aligned_cols=76  Identities=30%  Similarity=0.486  Sum_probs=65.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC-----cceeeeeCccHHHHHHHcCChHHHhc-ccCCcceEEEEE
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-----TGAAINFAPNAWLALDALGVSHKLAS-IYDPVKRLFVTN   80 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~i~~-~~~~~~~~~~~~   80 (115)
                      ||+||||||+|+++|+.|+++|++|+|+|+.+.++.     .+++..+.+++.+.|+.+|+.+.+.+ ...+.....++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            799999999999999999999999999999987532     24778899999999999999999887 677777777766


Q ss_pred             CC
Q 047339           81 LR   82 (115)
Q Consensus        81 ~~   82 (115)
                      ..
T Consensus        81 ~~   82 (385)
T TIGR01988        81 GG   82 (385)
T ss_pred             CC
Confidence            43

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.61  E-value=1.5e-14  Score=100.87  Aligned_cols=77  Identities=26%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC-CCCC----CcceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEEE
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLR----GTGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLFV   78 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~-~~~~----~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~~   78 (115)
                      .+||+||||||+|+++|+.|++.|++|+|+|+. +...    ...++..+.++++++|+.+|+++.+.+. ..++....+
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            589999999999999999999999999999986 2221    2356788999999999999999999764 677777888


Q ss_pred             EEC
Q 047339           79 TNL   81 (115)
Q Consensus        79 ~~~   81 (115)
                      ++.
T Consensus        84 ~~~   86 (405)
T PRK08850         84 WEQ   86 (405)
T ss_pred             EeC
Confidence            764

>PRK08013 oxidoreductase; Provisional

Probab=99.61  E-value=1.6e-14  Score=100.67  Aligned_cols=78  Identities=26%  Similarity=0.221  Sum_probs=65.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC------cceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEE
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG------TGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLF   77 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~------~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~   77 (115)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+.+..      ..++..+.++++++|+++|+++.+.+. ..+++...
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            47999999999999999999999999999999876432      235667899999999999999998765 45777777


Q ss_pred             EEECC
Q 047339           78 VTNLR   82 (115)
Q Consensus        78 ~~~~~   82 (115)
                      +++..
T Consensus        83 ~~~~~   87 (400)
T PRK08013         83 VWDKD   87 (400)
T ss_pred             EEeCC
Confidence            77643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.60  E-value=1.4e-14  Score=100.97  Aligned_cols=78  Identities=26%  Similarity=0.315  Sum_probs=63.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--------CCcceeeeeCccHHHHHHHcCChHHHhcc-cCCcc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--------RGTGAAINFAPNAWLALDALGVSHKLASI-YDPVK   74 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--------~~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~   74 (115)
                      |.+||+||||||+|+++|+.|+++|++|+|+|+.+..        ....++..+.+++.++|+.+|+++.+.+. ..+..
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~   80 (405)
T PRK05714          1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS   80 (405)
T ss_pred             CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence            3579999999999999999999999999999997621        11335677899999999999999988753 45666


Q ss_pred             eEEEEEC
Q 047339           75 RLFVTNL   81 (115)
Q Consensus        75 ~~~~~~~   81 (115)
                      ...+++.
T Consensus        81 ~~~~~~~   87 (405)
T PRK05714         81 EMQVWDG   87 (405)
T ss_pred             eEEEEcC
Confidence            7777654

>PTZ00367 squalene epoxidase; Provisional

Probab=99.59  E-value=1.3e-14  Score=104.88  Aligned_cols=88  Identities=27%  Similarity=0.271  Sum_probs=71.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC-CCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG-LRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLR   82 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~   82 (115)
                      .++||+|||||++|+++|+.|+++|++|+|+|+... ......+..+.+++.++|+++|+++.+.....++.+..+++. 
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~-  110 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDH-  110 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEEC-
Confidence            468999999999999999999999999999999762 112345667999999999999999999888888888888763 


Q ss_pred             CCeeEEeecC
Q 047339           83 TGATQETSLA   92 (115)
Q Consensus        83 ~~~~~~~~~~   92 (115)
                      +++...++++
T Consensus       111 ~G~~~~i~~~  120 (567)
T PTZ00367        111 KGKQVKLPYG  120 (567)
T ss_pred             CCCEEEecCC
Confidence            3544445543

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.59  E-value=1.4e-14  Score=99.43  Aligned_cols=90  Identities=39%  Similarity=0.584  Sum_probs=79.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTG   84 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~   84 (115)
                      +.+|+|||||++||++|+.|++.|++|+|+|+...+++.+.++++.-++.+.|+.+++.+.+...+.++.........+|
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg   81 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG   81 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence            46899999999999999999999999999999988888899999999999999999999999999999988866666667


Q ss_pred             ee-EEeecCCC
Q 047339           85 AT-QETSLAGK   94 (115)
Q Consensus        85 ~~-~~~~~~~~   94 (115)
                      +. .++++..+
T Consensus        82 ~~~~~~~~~~~   92 (420)
T KOG2614|consen   82 KEVSRILYGEP   92 (420)
T ss_pred             CeeEecccCCc
Confidence            65 67766533

>PLN02985 squalene monooxygenase

Probab=99.59  E-value=2.7e-14  Score=102.31  Aligned_cols=88  Identities=25%  Similarity=0.319  Sum_probs=70.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEEEEEC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLFVTNL   81 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~~~~~   81 (115)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+.........+..+.+++.+.|+++|+++.+... ..+..+..++. 
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~-  119 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK-  119 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE-
Confidence            4568999999999999999999999999999999765444567888999999999999999988764 34566666654 


Q ss_pred             CCCeeEEeecC
Q 047339           82 RTGATQETSLA   92 (115)
Q Consensus        82 ~~~~~~~~~~~   92 (115)
                       +++....+++
T Consensus       120 -~g~~~~~~~~  129 (514)
T PLN02985        120 -DGKEAVAPFP  129 (514)
T ss_pred             -CCEEEEEeCC
Confidence             4444344554

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.58  E-value=2.9e-14  Score=100.43  Aligned_cols=76  Identities=29%  Similarity=0.367  Sum_probs=63.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHH----CCCceEEEcCCCCCCC------------cceeeeeCccHHHHHHHcCChHHHhcc
Q 047339            6 KDVVIIGAGIAGLATALALKR----LGIKPLVLEKSDGLRG------------TGAAINFAPNAWLALDALGVSHKLASI   69 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~----~g~~v~viE~~~~~~~------------~~~~~~~~~~~~~~l~~~g~~~~i~~~   69 (115)
                      +||+||||||+|+++|+.|++    +|++|+|+|+.+.+..            ..+++.+.++++++|+.+|+++.+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            589999999999999999999    8999999999543321            357899999999999999999999765


Q ss_pred             -cCCcceEEEEEC
Q 047339           70 -YDPVKRLFVTNL   81 (115)
Q Consensus        70 -~~~~~~~~~~~~   81 (115)
                       ..++....+++.
T Consensus        81 ~~~~~~~~~~~~~   93 (437)
T TIGR01989        81 RIQPFGRMQVWDG   93 (437)
T ss_pred             cCCceeeEEEecC
Confidence             356666766653

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.57  E-value=1.6e-14  Score=99.82  Aligned_cols=74  Identities=34%  Similarity=0.553  Sum_probs=63.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCCc----ceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGT----GAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~~----~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      ||+||||||+|+++|+.|+++| ++|+|+|+.+.+...    .++..+.+++.+.|+.+|+.+.+.....+.....+.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~   79 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSD   79 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEc
Confidence            7999999999999999999999 999999998765432    4678899999999999999999887777776666654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.57  E-value=5e-14  Score=97.67  Aligned_cols=84  Identities=26%  Similarity=0.348  Sum_probs=66.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC------CcceeeeeCccHHHHHHHcCChHHHhcc-cCCc
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR------GTGAAINFAPNAWLALDALGVSHKLASI-YDPV   73 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~   73 (115)
                      |...++||+||||||+|+++|+.|++.|++|+|+|+.+...      ...+...+.+++.++|+.+|+++.+... ..++
T Consensus         1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (391)
T PRK08020          1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY   80 (391)
T ss_pred             CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence            66778999999999999999999999999999999875421      1235678899999999999999888763 3455


Q ss_pred             ceEEEEECCCC
Q 047339           74 KRLFVTNLRTG   84 (115)
Q Consensus        74 ~~~~~~~~~~~   84 (115)
                      .....+.+..+
T Consensus        81 ~~~~~~~~~~~   91 (391)
T PRK08020         81 RRLETWEWETA   91 (391)
T ss_pred             ceEEEEeCCCC
Confidence            55666554443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.56  E-value=4.1e-14  Score=98.11  Aligned_cols=76  Identities=24%  Similarity=0.332  Sum_probs=61.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--C---C-cceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEE
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--R---G-TGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLF   77 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--~---~-~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~   77 (115)
                      .+||+||||||+|+++|+.|++.|++|+|+|+.+..  .   . ..++..++++++++|+++|+++.+... ..++....
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            379999999999999999999999999999987521  1   1 225568999999999999999988763 45666666


Q ss_pred             EEE
Q 047339           78 VTN   80 (115)
Q Consensus        78 ~~~   80 (115)
                      +++
T Consensus        83 ~~~   85 (384)
T PRK08849         83 TWE   85 (384)
T ss_pred             EEe
Confidence            655

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.56  E-value=3.1e-14  Score=98.68  Aligned_cols=77  Identities=34%  Similarity=0.480  Sum_probs=63.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC---CCceEEEcCCC-C----CCCcceeeeeCccHHHHHHHcCChHHHhcccCCcce
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL---GIKPLVLEKSD-G----LRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKR   75 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~---g~~v~viE~~~-~----~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~   75 (115)
                      +++||+||||||+|+++|+.|+++   |++|+|+|+.. .    +...++++.+.+++.+.|+.+|+++.+.+...+...
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~   81 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH   81 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence            457999999999999999999998   99999999953 2    122356888999999999999999999887777666


Q ss_pred             EEEEE
Q 047339           76 LFVTN   80 (115)
Q Consensus        76 ~~~~~   80 (115)
                      ..+.+
T Consensus        82 ~~~~~   86 (395)
T PRK05732         82 IHVSD   86 (395)
T ss_pred             EEEec
Confidence            65554

>PRK07236 hypothetical protein; Provisional

Probab=99.55  E-value=4.1e-14  Score=98.12  Aligned_cols=81  Identities=32%  Similarity=0.430  Sum_probs=64.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLR   82 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~   82 (115)
                      ++++|+|||||++||++|+.|++.|++|+|+|+.+.. ...+.++.+.+++.++|+.+|+.+.. ....+.....+++ .
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~-~   82 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLD-R   82 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEe-C
Confidence            4689999999999999999999999999999998753 34567888999999999999997665 4455555555555 3


Q ss_pred             CCee
Q 047339           83 TGAT   86 (115)
Q Consensus        83 ~~~~   86 (115)
                      +++.
T Consensus        83 ~g~~   86 (386)
T PRK07236         83 DGRV   86 (386)
T ss_pred             CCCE
Confidence            3443

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.55  E-value=4.9e-14  Score=97.53  Aligned_cols=80  Identities=28%  Similarity=0.394  Sum_probs=65.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC-----cceeeeeCccHHHHHHHcCChHHHhcc-cCCcceE
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-----TGAAINFAPNAWLALDALGVSHKLASI-YDPVKRL   76 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~   76 (115)
                      .|++||+||||||+|+++|+.|++.|++|+|+|+.+.+..     ..+.+.+.++++++|+.+|+++.+... ..+....
T Consensus         3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~   82 (388)
T PRK07608          3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM   82 (388)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence            3678999999999999999999999999999999877543     234578999999999999999887543 3456666


Q ss_pred             EEEECC
Q 047339           77 FVTNLR   82 (115)
Q Consensus        77 ~~~~~~   82 (115)
                      .++...
T Consensus        83 ~~~~~~   88 (388)
T PRK07608         83 RVFGDA   88 (388)
T ss_pred             EEEECC
Confidence            666543

>PRK06996 hypothetical protein; Provisional

Probab=99.52  E-value=2.6e-13  Score=94.50  Aligned_cols=77  Identities=25%  Similarity=0.361  Sum_probs=63.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCC----CceEEEcCCCCC--CCcceeeeeCccHHHHHHHcCChHHHhcccCCcc
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLG----IKPLVLEKSDGL--RGTGAAINFAPNAWLALDALGVSHKLASIYDPVK   74 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g----~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~   74 (115)
                      |.++.+||+||||||+|+++|+.|+++|    ++|+|+|+.+..  ....+++.+++++.++|+.+|+++.   ...++.
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~   83 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIE   83 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCccc
Confidence            5567899999999999999999999987    469999997543  2355789999999999999999876   345566


Q ss_pred             eEEEEE
Q 047339           75 RLFVTN   80 (115)
Q Consensus        75 ~~~~~~   80 (115)
                      ...+++
T Consensus        84 ~~~~~~   89 (398)
T PRK06996         84 HIHVSQ   89 (398)
T ss_pred             EEEEec
Confidence            666654

>PRK06834 hypothetical protein; Provisional

Probab=99.52  E-value=2.6e-13  Score=96.84  Aligned_cols=68  Identities=24%  Similarity=0.282  Sum_probs=59.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-CcceeeeeCccHHHHHHHcCChHHHhcccCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-GTGAAINFAPNAWLALDALGVSHKLASIYDP   72 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~   72 (115)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...++..++++++++|+.+|+.+.+.+....
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~   71 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQV   71 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCc
Confidence            4799999999999999999999999999999987654 3457788999999999999999998875544

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.49  E-value=2e-13  Score=93.36  Aligned_cols=107  Identities=27%  Similarity=0.356  Sum_probs=83.0

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhccc-CCcceEEEEE
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIY-DPVKRLFVTN   80 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~-~~~~~~~~~~   80 (115)
                      .+...||+|||+|.+|.++|+.|++.|.+|+|+||.-.-..+--|.-+.|.+...|.++|+.|-++... ++..++.++.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk  121 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK  121 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence            345789999999999999999999999999999997765456667788999999999999999998865 4556777776


Q ss_pred             CCCCeeEEeecCCC--CCCCCCccccchhHHH
Q 047339           81 LRTGATQETSLAGK--SENGSGSQIHTSQKVT  110 (115)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  110 (115)
                        +|+...+||+..  .....|..+|.+.-|+
T Consensus       122 --~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq  151 (509)
T KOG1298|consen  122 --DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQ  151 (509)
T ss_pred             --CCceeeccCCCcCCCCCcccceeeccHHHH
Confidence              566666776633  2334466566665444

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.49  E-value=1.3e-13  Score=96.35  Aligned_cols=64  Identities=33%  Similarity=0.509  Sum_probs=58.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhccc
Q 047339            7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIY   70 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~   70 (115)
                      +|+|||||++||++|+.|+++| ++|+|||+.+.....+.++.+.++++++|+.+|+.+.+....
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~   66 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVA   66 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHh
Confidence            7999999999999999999998 699999999888778889999999999999999988776544

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.42  E-value=4.2e-13  Score=85.78  Aligned_cols=59  Identities=34%  Similarity=0.477  Sum_probs=49.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce-------eeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA-------AINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~-------~~~~~~~~~~~l~~~g~~   63 (115)
                      ..||+|||+||+||++|++|+++|.+|+|+|++..+++..+       .+.+..++.++|+.+|+.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~   95 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIR   95 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCc
Confidence            56999999999999999999999999999999887754322       245667788999999875

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.41  E-value=2.1e-12  Score=91.36  Aligned_cols=74  Identities=16%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      |+.+++||+||||||+|+++|+.|+++|++|+|+|+.... ...++..+.   .+.++.+++++.+..  .+++...++.
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~-~k~cgg~i~---~~~l~~lgl~~~~~~--~~i~~~~~~~  108 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN-AKPCGGAIP---LCMVGEFDLPLDIID--RKVTKMKMIS  108 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-CCCcccccc---HhHHhhhcCcHHHHH--HHhhhheEec
Confidence            5667899999999999999999999999999999997542 233444443   356778888765543  2333445543

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.39  E-value=7.5e-13  Score=84.60  Aligned_cols=60  Identities=38%  Similarity=0.484  Sum_probs=45.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc-e------eeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG-A------AINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~-~------~~~~~~~~~~~l~~~g~~   63 (115)
                      .++||+|||+||+||++|++|+++|++|.|+|++..+++.. .      .+.+..++..+|+.+|+.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~   82 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP   82 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT--
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce
Confidence            46899999999999999999999999999999988775422 2      245667788999999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.37  E-value=8.3e-12  Score=91.52  Aligned_cols=69  Identities=33%  Similarity=0.475  Sum_probs=55.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCc---ceeeeeCccHHHHHHHcCC--hHHHhcccC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGT---GAAINFAPNAWLALDALGV--SHKLASIYD   71 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~---~~~~~~~~~~~~~l~~~g~--~~~i~~~~~   71 (115)
                      ..+.+|+|||||++||++|+.|+++|++|+|||+.+.. ...   ..++.+.++++++|+.+|+  .+.+...+.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~  153 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGC  153 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcC
Confidence            35689999999999999999999999999999997632 222   2568899999999999985  455555443

>PRK11445 putative oxidoreductase; Provisional

Probab=99.35  E-value=2.2e-12  Score=88.65  Aligned_cols=57  Identities=30%  Similarity=0.329  Sum_probs=50.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC----CcceeeeeCccHHHHHHHcCCh
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR----GTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~----~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +||+||||||+|+++|+.|++. ++|+|+|+.+...    ...++..+++++.+.|+++|++
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~   62 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLT   62 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCC
Confidence            7999999999999999999999 9999999987542    2346778999999999999985

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.33  E-value=2.9e-12  Score=89.39  Aligned_cols=55  Identities=38%  Similarity=0.488  Sum_probs=45.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee-eeeCccHHHHH
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA-INFAPNAWLAL   57 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~-~~~~~~~~~~l   57 (115)
                      ++++||+||||||+|+++|+.|++.|++|+|+|+.+.++....+ ..+.+...+.+
T Consensus         1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l   56 (396)
T COG0644           1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL   56 (396)
T ss_pred             CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHh
Confidence            36799999999999999999999999999999999988765555 55666554444

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.30  E-value=3.4e-11  Score=83.76  Aligned_cols=69  Identities=23%  Similarity=0.392  Sum_probs=50.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      +||+||||||+|+++|+.|++.|++|+|+|+... ....++..+++   +.++.+++.+.+..  .+.....++.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~-~~~~cg~~i~~---~~l~~l~i~~~~~~--~~~~~~~~~~   69 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALS-NIKPCGGAIPP---CLIEEFDIPDSLID--RRVTQMRMIS   69 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC-CcCcCcCCcCH---hhhhhcCCchHHHh--hhcceeEEEc
Confidence            6999999999999999999999999999999721 12234444544   46778888766544  2445566654

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.29  E-value=8.1e-12  Score=82.68  Aligned_cols=61  Identities=34%  Similarity=0.449  Sum_probs=46.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce--e-----eeeCccHHHHHHHcCCh
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA--A-----INFAPNAWLALDALGVS   63 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~--~-----~~~~~~~~~~l~~~g~~   63 (115)
                      ..++||+||||||+|+++|+.|++.|++|+|+|++..+++...  +     ..+.+...++|+.+|+.
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~   90 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR   90 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC
Confidence            4578999999999999999999999999999999877643211  1     22334456677776653

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.28  E-value=1.1e-11  Score=87.37  Aligned_cols=42  Identities=38%  Similarity=0.570  Sum_probs=38.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      |+..++||+||||||+|+++|+.|+++|++|+|+|+.+.++.
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~   42 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA   42 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence            666789999999999999999999999999999999887654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.28  E-value=7.4e-12  Score=83.39  Aligned_cols=56  Identities=34%  Similarity=0.388  Sum_probs=47.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG   61 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g   61 (115)
                      +||+||||||+|+++|+.|++.|++|+|+|+...+....++..+.++..+.+...+
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~   56 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPL   56 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCc
Confidence            59999999999999999999999999999999876655666777777777766554

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK10015 oxidoreductase; Provisional

Probab=99.28  E-value=1.1e-11  Score=87.37  Aligned_cols=42  Identities=36%  Similarity=0.621  Sum_probs=38.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      |+..++||+||||||+|+++|+.|++.|++|+|+|+.+.++.
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~   42 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC   42 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            666779999999999999999999999999999999887654

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.23  E-value=2.8e-11  Score=80.00  Aligned_cols=60  Identities=38%  Similarity=0.532  Sum_probs=45.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee-------eeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA-------INFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~-------~~~~~~~~~~l~~~g~~   63 (115)
                      .++||+||||||+||++|+.|+++|++|+|+||+..+++..++       ..+.....++++.+|+.
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~   86 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR   86 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC
Confidence            5789999999999999999999999999999999876432211       12233456677777654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.23  E-value=3.1e-11  Score=64.53  Aligned_cols=38  Identities=47%  Similarity=0.713  Sum_probs=32.9

Q ss_pred             EECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339           10 IIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI   47 (115)
Q Consensus        10 IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~   47 (115)
                      |||||++||++|+.|+++|++|+|+|+.+.+++.....
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~   38 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF   38 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence            89999999999999999999999999999887655443

...

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.21  E-value=6.9e-11  Score=88.38  Aligned_cols=73  Identities=25%  Similarity=0.293  Sum_probs=57.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCCcceeeeeCccHHHHHHHcC--ChHHHhcccCCcceEEEE
Q 047339            7 DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG--VSHKLASIYDPVKRLFVT   79 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~i~~~~~~~~~~~~~   79 (115)
                      +|+||||||+||++|+.|+++  |++|+|+|+++.....+.++.+++++.+.|+.++  +...+...........++
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~   78 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVH   78 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEE
Confidence            799999999999999999998  8999999998876667788999999999998877  233343333333344444

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.21  E-value=1.5e-10  Score=80.88  Aligned_cols=68  Identities=19%  Similarity=0.324  Sum_probs=49.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEE
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVT   79 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~   79 (115)
                      +||+||||||+|+++|+.|+++|++|+|+|+.+... ..++..+.   .+.++.+|+++.+..  ..++...++
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~--~~i~~~~~~   68 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIID--RRVTKMKMI   68 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHH--hhhceeEEe
Confidence            489999999999999999999999999999976533 33333343   356788888765443  233344444

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.15  E-value=1.2e-10  Score=80.14  Aligned_cols=58  Identities=26%  Similarity=0.294  Sum_probs=43.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC-------cceeeeeCccHHHHHHHcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-------TGAAINFAPNAWLALDALG   61 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~-------~~~~~~~~~~~~~~l~~~g   61 (115)
                      +.+||+||||||+|+++|..++++|++|+|+|+++.++.       ..++++.....-+++.+.+
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p   66 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNP   66 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCC
Confidence            457999999999999999999999999999999987642       2334444433444554443

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.14  E-value=2.4e-10  Score=80.90  Aligned_cols=61  Identities=34%  Similarity=0.467  Sum_probs=48.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCCCCcceee---------------eeCccHHHHHHHcCChHHH
Q 047339            6 KDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLRGTGAAI---------------NFAPNAWLALDALGVSHKL   66 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~~~~~~~~---------------~~~~~~~~~l~~~g~~~~i   66 (115)
                      +||+|||||++||++|+.|+++    |++|+|+|+.+.+++...+.               ...++..++++.+|+.+.+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~   82 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL   82 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence            6899999999999999999998    99999999998876543321               1124477888888886554

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.13  E-value=1.1e-10  Score=83.38  Aligned_cols=42  Identities=50%  Similarity=0.690  Sum_probs=37.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~   45 (115)
                      +.+|++|||||+.||++|..|+++|++|+|+||+..+++...
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~   43 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR   43 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence            357999999999999999999999999999999998876443

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.11  E-value=1.9e-10  Score=81.08  Aligned_cols=60  Identities=37%  Similarity=0.531  Sum_probs=46.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCCCcceeee---------------eCccHHHHHHHcCChHH
Q 047339            6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLRGTGAAIN---------------FAPNAWLALDALGVSHK   65 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~~~~~~~~---------------~~~~~~~~l~~~g~~~~   65 (115)
                      ++|+|||||++||++|+.|+++|  ++|+|+|+++.+++...+..               -.++..++++.+|+.+.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~   77 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDE   77 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccc
Confidence            37999999999999999999988  89999999988765433211               12345678888887644

>PRK07233 hypothetical protein; Provisional

Probab=99.10  E-value=2.3e-10  Score=80.11  Aligned_cols=59  Identities=37%  Similarity=0.537  Sum_probs=45.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee---------------eCccHHHHHHHcCChHH
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN---------------FAPNAWLALDALGVSHK   65 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~---------------~~~~~~~~l~~~g~~~~   65 (115)
                      +|+|||||++||++|+.|+++|++|+|+|+.+.+++...+..               ..++..++++.+|+.+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~   74 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDK   74 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCc
Confidence            589999999999999999999999999999998866443221               12345677777776544

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.08  E-value=2.8e-10  Score=80.81  Aligned_cols=85  Identities=26%  Similarity=0.329  Sum_probs=58.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC---CceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHH--HhcccCC-cceEEEEE
Q 047339            7 DVVIIGAGIAGLATALALKRLG---IKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK--LASIYDP-VKRLFVTN   80 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--i~~~~~~-~~~~~~~~   80 (115)
                      ||+|||||++|.++|..|++.+   ++|+|+|+...+ ..+.|....|....+++.+|+.+.  +.+.... ..+..|.+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~-~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~   79 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP-RIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN   79 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC-CCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence            6999999999999999999988   899999987665 355566778888889999999866  6555444 34677766


Q ss_pred             CCC-CeeEEeecC
Q 047339           81 LRT-GATQETSLA   92 (115)
Q Consensus        81 ~~~-~~~~~~~~~   92 (115)
                      +.. +.....||.
T Consensus        80 w~~~~~~~~~~f~   92 (454)
T PF04820_consen   80 WGERGESYFHPFG   92 (454)
T ss_dssp             SSSCCSEEEEESS
T ss_pred             cCCCCCceEeecc
Confidence            654 344677775

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.08  E-value=2.5e-10  Score=81.00  Aligned_cols=46  Identities=30%  Similarity=0.499  Sum_probs=39.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA   46 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~   46 (115)
                      |.+.++||+||||||+|+.+|+.|++.|.+|+|+|+.+..++....
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            6666899999999999999999999999999999997666554433

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.07  E-value=1.3e-09  Score=76.93  Aligned_cols=62  Identities=29%  Similarity=0.440  Sum_probs=50.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCCCccee--------------eee-CccHHHHHHHcCChHHHhc
Q 047339            7 DVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLRGTGAA--------------INF-APNAWLALDALGVSHKLAS   68 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~~~~~~--------------~~~-~~~~~~~l~~~g~~~~i~~   68 (115)
                      +|+|||||++||++|+.|++++  ++++|+|+.+..++..++              +.. .+...+.++.+|+.+.+..
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~   80 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLW   80 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhcc
Confidence            7999999999999999999999  999999999877653322              112 2567788999999988873

>PRK07208 hypothetical protein; Provisional

Probab=99.07  E-value=3.3e-10  Score=80.69  Aligned_cols=42  Identities=45%  Similarity=0.544  Sum_probs=37.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      +.+.||+|||||++||++|+.|+++|++|+|+|+.+..++..
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~   43 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS   43 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            556899999999999999999999999999999998876543

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.07  E-value=2.1e-10  Score=80.39  Aligned_cols=36  Identities=42%  Similarity=0.658  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      |||+||||||+||++|+.+++.|.+|+|+|+++.++
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~g   36 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVG   36 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence            699999999999999999999999999999998763

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.06  E-value=5.8e-10  Score=78.97  Aligned_cols=60  Identities=42%  Similarity=0.556  Sum_probs=48.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee----------------eeeCccHHHHHHHcCChHHH
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA----------------INFAPNAWLALDALGVSHKL   66 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~----------------~~~~~~~~~~l~~~g~~~~i   66 (115)
                      +|+|||||++||++|+.|+++|++|+|+|+.+.+++...+                ....++..++++.+|+.+.+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~   76 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRL   76 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccce
Confidence            5899999999999999999999999999998876553221                12247788999999986543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02661 Putative thiazole synthesis

Probab=99.02  E-value=9.8e-10  Score=75.37  Aligned_cols=61  Identities=38%  Similarity=0.503  Sum_probs=45.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCCCCcce-e------eeeCccHHHHHHHcCCh
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGLRGTGA-A------INFAPNAWLALDALGVS   63 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~~~~~~-~------~~~~~~~~~~l~~~g~~   63 (115)
                      ..++||+|||+|++|+++|+.|++. |++|+|+|+...+++..+ +      ..+.....++|+++|+.
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~  158 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP  158 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC
Confidence            3578999999999999999999986 899999999877643211 1      12223356778888874

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.01  E-value=8.1e-10  Score=79.31  Aligned_cols=57  Identities=25%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-CcceeeeeCccHHHHHHH
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-GTGAAINFAPNAWLALDA   59 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~   59 (115)
                      +.++||+|||||++|+.+|+.|+++|++|+|+|+.+... .++++..+-..+.++++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~   61 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEY   61 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHh
Confidence            456899999999999999999999999999999986543 334444343444445443

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=6.3e-10  Score=78.68  Aligned_cols=59  Identities=34%  Similarity=0.402  Sum_probs=47.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee----------------eeeCccHHHHHHHcCChH
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA----------------INFAPNAWLALDALGVSH   64 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~----------------~~~~~~~~~~l~~~g~~~   64 (115)
                      ++|+|+|||++||++|+.|+.+|++|+|+|+++..++...+                .....+..+.|.+++..+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~   75 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIED   75 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchh
Confidence            37999999999999999999999999999999988764432                233456677777777653

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=99.00  E-value=1.2e-09  Score=76.57  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=45.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc--------eeeeeCccHHHHHHHcCChH-HHhc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG--------AAINFAPNAWLALDALGVSH-KLAS   68 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~--------~~~~~~~~~~~~l~~~g~~~-~i~~   68 (115)
                      ..||+|||||++|+.+|+.|++.|++|+|+|+.+......        +....+..+...+...|++. .+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~   74 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRR   74 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHH
Confidence            4699999999999999999999999999999876542210        11223333455677777764 4443

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.99  E-value=9.8e-10  Score=78.00  Aligned_cols=61  Identities=28%  Similarity=0.482  Sum_probs=46.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC------CCceEEEcCCCCCCCcceee---------------eeCccHHHHHHHcCChH
Q 047339            6 KDVVIIGAGIAGLATALALKRL------GIKPLVLEKSDGLRGTGAAI---------------NFAPNAWLALDALGVSH   64 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~------g~~v~viE~~~~~~~~~~~~---------------~~~~~~~~~l~~~g~~~   64 (115)
                      ++|+|||||++||++|+.|++.      |++|+|+|+++.+++..++.               ...++..++++++|+.+
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~   81 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE   81 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence            4799999999999999999986      38999999999886644321               11344567888888765


Q ss_pred             HH
Q 047339           65 KL   66 (115)
Q Consensus        65 ~i   66 (115)
                      .+
T Consensus        82 ~~   83 (463)
T PRK12416         82 EM   83 (463)
T ss_pred             ce
Confidence            53

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.99  E-value=2.3e-09  Score=77.93  Aligned_cols=65  Identities=29%  Similarity=0.394  Sum_probs=47.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc-ee-eeeCccHHHHHHHcCChHH
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG-AA-INFAPNAWLALDALGVSHK   65 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~-~~-~~~~~~~~~~l~~~g~~~~   65 (115)
                      |.+.++||+|||+|++|+++|+.++++|.+|+|+|+.+..++.. .+ ..++....++++..|+.+.
T Consensus         3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~   69 (557)
T PRK07843          3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDT   69 (557)
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHH
Confidence            56778999999999999999999999999999999987654311 11 1122223456666666543

>PLN02576 protoporphyrinogen oxidase

Probab=98.98  E-value=1.4e-09  Score=77.85  Aligned_cols=42  Identities=43%  Similarity=0.650  Sum_probs=37.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCCCCcce
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~~~~~~   45 (115)
                      .++||+|||||++||++|+.|+++ |++|+|+|+.+.+++...
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~   53 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT   53 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence            457999999999999999999999 999999999988766543

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.97  E-value=8.8e-10  Score=76.08  Aligned_cols=36  Identities=33%  Similarity=0.488  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            468999999999999999999999999999998764

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.97  E-value=1.8e-09  Score=77.67  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=42.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-CcceeeeeCccHHHHHHH
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-GTGAAINFAPNAWLALDA   59 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~   59 (115)
                      ..+||+|||||++|+.+|+.|+++|++|+|+|+++... .++++..+-..+.+++..
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~   61 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH   61 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh
Confidence            35899999999999999999999999999999986543 344544444455455443

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.97  E-value=1.4e-09  Score=77.84  Aligned_cols=41  Identities=44%  Similarity=0.712  Sum_probs=37.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      ..+++|+|||||++||++|..|...|++|+|+|..+.++++
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR   53 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR   53 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence            34679999999999999999999999999999999887654

>PLN02463 lycopene beta cyclase

Probab=98.97  E-value=1.5e-09  Score=76.92  Aligned_cols=61  Identities=25%  Similarity=0.256  Sum_probs=43.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLAS   68 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~   68 (115)
                      ..+||+||||||+|+++|..|+++|++|.|+|+.+... ...+...+   .+.++.+|+.+.+..
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~-~p~~~g~w---~~~l~~lgl~~~l~~   87 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI-WPNNYGVW---VDEFEALGLLDCLDT   87 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch-hccccchH---HHHHHHCCcHHHHHh
Confidence            35799999999999999999999999999999875421 11111111   345677777665543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.97  E-value=1e-09  Score=78.13  Aligned_cols=43  Identities=37%  Similarity=0.533  Sum_probs=36.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI   47 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~   47 (115)
                      ++||+|||+||+|+.+|..+++.|.+|+|+|++...++.+...
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~   45 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV   45 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC
Confidence            4899999999999999999999999999999865555554333

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.96  E-value=1.4e-09  Score=77.81  Aligned_cols=37  Identities=43%  Similarity=0.636  Sum_probs=34.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .||+|||||++||++|..|+++|++|+|+|+++.+++
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            6899999999999999999999999999999988765

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.95  E-value=2.1e-09  Score=76.71  Aligned_cols=61  Identities=28%  Similarity=0.405  Sum_probs=48.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee----------------eeCccHHHHHHHcCChHHHh
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI----------------NFAPNAWLALDALGVSHKLA   67 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~----------------~~~~~~~~~l~~~g~~~~i~   67 (115)
                      +|+|||||++|+++|+.|+++|++|+|+|+.+..++...+.                ...++..++++++|+.+.+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~   77 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLL   77 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccccc
Confidence            58999999999999999999999999999988775432221                12455778899999876654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.95  E-value=1.7e-09  Score=77.01  Aligned_cols=38  Identities=24%  Similarity=0.429  Sum_probs=35.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+..++|++||||||+|+.+|..|++.|.+|+|+|+..
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            56788999999999999999999999999999999863

>PLN02612 phytoene desaturase

Probab=98.95  E-value=3.4e-09  Score=77.13  Aligned_cols=63  Identities=43%  Similarity=0.562  Sum_probs=50.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee----------------eeeCccHHHHHHHcCChHHH
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA----------------INFAPNAWLALDALGVSHKL   66 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~----------------~~~~~~~~~~l~~~g~~~~i   66 (115)
                      .+.+|+|||+|++||++|+.|+++|++|+|+|+.+..++...+                ....++..++++++|+.+.+
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~  170 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRL  170 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccc
Confidence            4578999999999999999999999999999998765443221                12356788899999987654

>PRK06370 mercuric reductase; Validated

Probab=98.94  E-value=2e-09  Score=76.56  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=33.7

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ...++|++|||+||+|+.+|+.|++.|++|+|+|+..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            3456999999999999999999999999999999863

>TIGR02730 carot_isom carotene isomerase

Probab=98.93  E-value=2.2e-09  Score=76.85  Aligned_cols=40  Identities=43%  Similarity=0.547  Sum_probs=36.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~   45 (115)
                      +||+|||+|++||++|.+|+++|++|+|+|++..+++...
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   40 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG   40 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            5899999999999999999999999999999998765443

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.93  E-value=2e-09  Score=76.61  Aligned_cols=40  Identities=38%  Similarity=0.582  Sum_probs=36.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .+++|+|||||++||++|..|.+.|++|+|+|+++..++.
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~   48 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL   48 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce
Confidence            3589999999999999999999999999999999887654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.93  E-value=1.8e-09  Score=76.43  Aligned_cols=40  Identities=30%  Similarity=0.442  Sum_probs=34.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~   45 (115)
                      +||++||||||+|+.+|+.+++.|++|+|+|+. ..++.+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee
Confidence            689999999999999999999999999999984 4444443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02487 zeta-carotene desaturase

Probab=98.93  E-value=3.3e-09  Score=77.12  Aligned_cols=63  Identities=27%  Similarity=0.385  Sum_probs=50.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee----------------eeCccHHHHHHHcCChHHHh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI----------------NFAPNAWLALDALGVSHKLA   67 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~----------------~~~~~~~~~l~~~g~~~~i~   67 (115)
                      +++|+|||+|++||++|+.|+++|++|+|+|+.+..++...+.                ...++..++++++|+.+.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~  153 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL  153 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence            3589999999999999999999999999999988765422111                12466889999999977654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.93  E-value=2.2e-09  Score=76.55  Aligned_cols=45  Identities=29%  Similarity=0.555  Sum_probs=37.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI   47 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~   47 (115)
                      +.++|++||||||+|+.+|..|++.|.+|+|+|+.+..++.+.+.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~   46 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNV   46 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCC
Confidence            345999999999999999999999999999999876555544433

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.92  E-value=2.3e-09  Score=75.80  Aligned_cols=42  Identities=33%  Similarity=0.481  Sum_probs=35.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC-CCCccee
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG-LRGTGAA   46 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~-~~~~~~~   46 (115)
                      ++||+||||||+|+.+|+.|+++|++|+|+|+.+. .++.+.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            58999999999999999999999999999998753 4444433

>PRK06116 glutathione reductase; Validated

Probab=98.92  E-value=1.6e-09  Score=76.79  Aligned_cols=40  Identities=33%  Similarity=0.499  Sum_probs=34.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      .++|++||||||+|+.+|+.|++.|++|+|+|+. ..++.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c   42 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC   42 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence            4689999999999999999999999999999985 344433

>PLN02268 probable polyamine oxidase

Probab=98.92  E-value=2.3e-09  Score=75.54  Aligned_cols=39  Identities=41%  Similarity=0.608  Sum_probs=35.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      .+|+|||||++||++|+.|.++|++|+|+|+.+..+++.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri   39 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV   39 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence            479999999999999999999999999999998876543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.92  E-value=2e-09  Score=75.04  Aligned_cols=36  Identities=50%  Similarity=0.710  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      .+||+|||||++|+++|+.|+++  |++|+|+|+...+
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~   39 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP   39 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence            48999999999999999999998  9999999998643

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.91  E-value=2.7e-09  Score=77.33  Aligned_cols=39  Identities=31%  Similarity=0.501  Sum_probs=35.1

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ++.++||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus         3 ~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~   41 (546)
T PRK11101          3 DSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA   41 (546)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence            445799999999999999999999999999999997643

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.90  E-value=2.3e-09  Score=75.64  Aligned_cols=36  Identities=50%  Similarity=0.737  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ||+|||||++|+++|+.+++.|.+|+|+|+...+++
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG   36 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG   36 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence            799999999999999999999999999999998765

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.90  E-value=2.7e-09  Score=76.50  Aligned_cols=37  Identities=43%  Similarity=0.631  Sum_probs=34.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            8 VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      |+|||||++||++|.+|+++|++|+|+|+++.+++..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~   37 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA   37 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence            6899999999999999999999999999999886543

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.89  E-value=4.2e-09  Score=77.45  Aligned_cols=56  Identities=20%  Similarity=0.289  Sum_probs=42.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCcceeeeeCccHHHHHH
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGTGAAINFAPNAWLALD   58 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~   58 (115)
                      +.++||+|||||+.|+.+|+.|+++|++|+|+|+.+.. +.++++..+-+.+.++++
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~  125 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLE  125 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcccchhhhhhhHHHHHH
Confidence            34589999999999999999999999999999998654 334444444444555544

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.89  E-value=3.1e-09  Score=75.06  Aligned_cols=35  Identities=34%  Similarity=0.466  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++||+||||||+|+.+|..|++.|.+|+|+|+.+.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            68999999999999999999999999999999764

>PRK13748 putative mercuric reductase; Provisional

Probab=98.89  E-value=2.8e-09  Score=77.33  Aligned_cols=39  Identities=31%  Similarity=0.457  Sum_probs=34.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++|++||||||+|+.+|..|++.|.+|+|+|+. ..++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~  135 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGT  135 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceee
Confidence            4699999999999999999999999999999987 44443

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.89  E-value=3.4e-09  Score=72.10  Aligned_cols=34  Identities=59%  Similarity=0.725  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~   34 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIG   34 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeecccc
Confidence            7999999999999999999999999999999443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.89  E-value=3.7e-09  Score=75.04  Aligned_cols=43  Identities=37%  Similarity=0.580  Sum_probs=36.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN   48 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~   48 (115)
                      .+||+||||||+|+.+|..|++.|.+|+|+|+ +..++.+.+..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~g   43 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVG   43 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecC
Confidence            38999999999999999999999999999999 55555544433

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.88  E-value=4.2e-09  Score=74.85  Aligned_cols=40  Identities=43%  Similarity=0.678  Sum_probs=35.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      .++|++||||||+|+.+|..|+++|++|+|+|+.. .++.+
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c   42 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTC   42 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccce
Confidence            46899999999999999999999999999999876 44443

>PLN02568 polyamine oxidase

Probab=98.88  E-value=5.7e-09  Score=75.56  Aligned_cols=43  Identities=37%  Similarity=0.512  Sum_probs=38.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCC-----CceEEEcCCCCCCCc
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLG-----IKPLVLEKSDGLRGT   43 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g-----~~v~viE~~~~~~~~   43 (115)
                      |.++.+||+|||||++||++|..|++.|     ++|+|+|+...+++.
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr   48 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR   48 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence            5566789999999999999999999887     899999998887654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.88  E-value=3.7e-09  Score=75.00  Aligned_cols=39  Identities=36%  Similarity=0.546  Sum_probs=34.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      ++||+||||||+|+.+|..|++.|.+|+|+|+.. .++.+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c   40 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTC   40 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccce
Confidence            5899999999999999999999999999999853 44444

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.87  E-value=4.2e-09  Score=72.89  Aligned_cols=38  Identities=42%  Similarity=0.593  Sum_probs=35.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++||+|||||++|+++|++|+++|.+|+++|+....
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence            56789999999999999999999999999999987754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.87  E-value=4.8e-09  Score=74.81  Aligned_cols=42  Identities=40%  Similarity=0.586  Sum_probs=35.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA   46 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~   46 (115)
                      ..||++||||||+|+.+|..|++.|.+|+|+|+. ..++.+..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            4589999999999999999999999999999986 44444433

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=5.2e-09  Score=76.18  Aligned_cols=40  Identities=40%  Similarity=0.573  Sum_probs=36.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      |+++++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus         1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~   40 (566)
T PRK06452          1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT   40 (566)
T ss_pred             CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            7778899999999999999999999999999999997643

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4.2e-09  Score=71.33  Aligned_cols=34  Identities=47%  Similarity=0.664  Sum_probs=30.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIK-PLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~   37 (115)
                      +.+||+||||||+||++|+++++++.+ ++|+|+.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~   36 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG   36 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC
Confidence            468999999999999999999999998 6666664

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.86  E-value=5.2e-09  Score=76.04  Aligned_cols=35  Identities=37%  Similarity=0.602  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+||+||||||+|+.+|..|+++|++|+|+|+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~   37 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD   37 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            34999999999999999999999999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.86  E-value=4.7e-09  Score=74.25  Aligned_cols=40  Identities=48%  Similarity=0.706  Sum_probs=37.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .+..+++|||||++||.+|..|.+.|++++++||.+.+++
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG   43 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG   43 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc
Confidence            4578999999999999999999999999999999998764

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=4.8e-09  Score=76.52  Aligned_cols=40  Identities=38%  Similarity=0.610  Sum_probs=37.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCC---CceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLG---IKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~~~   40 (115)
                      |++.++||+|||+|.+||++|+.+++.|   .+|+|+||....
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~   43 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM   43 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence            7888999999999999999999999998   899999998754

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.86  E-value=7.1e-09  Score=74.36  Aligned_cols=62  Identities=26%  Similarity=0.319  Sum_probs=52.8

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCcceeeeeCccHHHHHHHcCCh
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+.++|++|||||+.|+-.|.-++.+|++|.|+|+.+.. +.++++..+-+.+.++|+...+.
T Consensus         9 ~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~   71 (532)
T COG0578           9 RMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFS   71 (532)
T ss_pred             cccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchH
Confidence            346799999999999999999999999999999998875 45677777878888888876543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.85  E-value=5.5e-09  Score=74.20  Aligned_cols=39  Identities=44%  Similarity=0.595  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++|++||||||+|+.+|..|++.|.+|+|+|+ ...++.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~   40 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGT   40 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccc
Confidence            458999999999999999999999999999998 344433

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.84  E-value=6.8e-09  Score=73.60  Aligned_cols=41  Identities=49%  Similarity=0.744  Sum_probs=36.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCCCCCc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDGLRGT   43 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~~~~~   43 (115)
                      ..++||+|||||++|+.+|+.|.++|.+ ++|+||+...++.
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~   47 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT   47 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCc
Confidence            4568999999999999999999999999 9999999876543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.84  E-value=6.6e-09  Score=57.07  Aligned_cols=55  Identities=36%  Similarity=0.412  Sum_probs=41.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV   62 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~   62 (115)
                      +++|||||+.|+.+|..|++.|.+|+++++.+.+. ....-.+.....+.|++.|+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV   55 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGV   55 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCC
Confidence            48999999999999999999999999999998865 33222233334455555554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.84  E-value=1.1e-08  Score=74.71  Aligned_cols=41  Identities=37%  Similarity=0.690  Sum_probs=36.7

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ++.++||+|||+|++|+++|+.++++|.+|+|+||....++
T Consensus         6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG   46 (574)
T PRK12842          6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG   46 (574)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence            35678999999999999999999999999999999876543

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.84  E-value=4.7e-09  Score=72.56  Aligned_cols=34  Identities=44%  Similarity=0.614  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            5899999999999999999999999999999654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.84  E-value=5.7e-09  Score=72.49  Aligned_cols=34  Identities=41%  Similarity=0.673  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ||+||||||+|+++|+.|++.|++|+|+|+.+..
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~   34 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI   34 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            7999999999999999999999999999988654

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=7e-09  Score=76.32  Aligned_cols=40  Identities=40%  Similarity=0.433  Sum_probs=36.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      |+++++||+|||+|.+|+++|+.+++.|.+|+|+||....
T Consensus         4 ~~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          4 VERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             ccceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            4556789999999999999999999999999999998654

>TIGR02053 MerA mercuric reductase

Probab=98.83  E-value=8.1e-09  Score=73.43  Aligned_cols=38  Identities=39%  Similarity=0.590  Sum_probs=33.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      +|++||||||+|+.+|..+++.|.+|+|+|+.. .++.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c   38 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC   38 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence            699999999999999999999999999999865 44443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00058 glutathione reductase; Provisional

Probab=98.83  E-value=7.2e-09  Score=75.33  Aligned_cols=40  Identities=35%  Similarity=0.467  Sum_probs=35.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .+++|++|||+|++|+.+|..+++.|.+|+|+|+. ..++.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGt   85 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGT   85 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccc
Confidence            46899999999999999999999999999999986 34443

>PLN02697 lycopene epsilon cyclase

Probab=98.82  E-value=1.6e-08  Score=73.09  Aligned_cols=58  Identities=24%  Similarity=0.302  Sum_probs=42.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLA   67 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~   67 (115)
                      ..+||+||||||+|+++|..|++.|++|+|+|+.....   .+..++.   ..++.+++.+.+.
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~---~n~GvW~---~~l~~lgl~~~i~  164 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFKDLGLEDCIE  164 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC---Cccccch---hHHHhcCcHHHHH
Confidence            45899999999999999999999999999999753221   1222332   3466677665544

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.82  E-value=2.3e-08  Score=69.83  Aligned_cols=108  Identities=29%  Similarity=0.347  Sum_probs=64.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC------CCceEEEcCCCCCCCcce-eeeeCccHHHHHHHcCChHHH-hcccCCcce
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL------GIKPLVLEKSDGLRGTGA-AINFAPNAWLALDALGVSHKL-ASIYDPVKR   75 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~------g~~v~viE~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~i-~~~~~~~~~   75 (115)
                      ..+||+||||||+||++|+.|.+.      .++|.|+|+...+++... +-.+.|.+.+.|  +--|..- .....+...
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL--~P~wke~~apl~t~vT~  152 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL--LPDWKEDGAPLNTPVTS  152 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh--CcchhhcCCcccccccc
Confidence            468999999999999999998873      478999999988765443 334455443332  1111111 112233333


Q ss_pred             EEEEECCCCeeEEeecCCCCCCCCCccccchhHHHhhhc
Q 047339           76 LFVTNLRTGATQETSLAGKSENGSGSQIHTSQKVTRDLG  114 (115)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  114 (115)
                      ..|..-.......+|.+ .....+|..+.....+.+-|+
T Consensus       153 d~~~fLt~~~~i~vPv~-~pm~NhGNYvv~L~~~v~wLg  190 (621)
T KOG2415|consen  153 DKFKFLTGKGRISVPVP-SPMDNHGNYVVSLGQLVRWLG  190 (621)
T ss_pred             cceeeeccCceeecCCC-cccccCCcEEEEHHHHHHHHH
Confidence            33333221122444443 335677888888887777664

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.82  E-value=9.4e-09  Score=73.22  Aligned_cols=40  Identities=38%  Similarity=0.553  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~   45 (115)
                      ++|++||||||+|+.+|..|++.|.+|+|+|+. ..++.+.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~   43 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL   43 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            589999999999999999999999999999985 3334433

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.82  E-value=9.5e-09  Score=71.43  Aligned_cols=38  Identities=37%  Similarity=0.620  Sum_probs=34.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      +|++|||||++|+++|..|++.|.+|+|+|+.+..++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~   39 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN   39 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence            69999999999999999999999999999998766553

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.82  E-value=9e-09  Score=75.30  Aligned_cols=39  Identities=38%  Similarity=0.517  Sum_probs=35.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |++..+||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus         8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            456678999999999999999999999999999999754

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.82  E-value=8.3e-09  Score=68.25  Aligned_cols=37  Identities=49%  Similarity=0.767  Sum_probs=34.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .+|+|||+|++|+++|+.|+.+|+.|+|+||....++
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG   38 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG   38 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence            4799999999999999999999999999999887654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.81  E-value=8.1e-09  Score=78.93  Aligned_cols=39  Identities=38%  Similarity=0.536  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++|+||||||+|+++|+.|++.|++|+|+|+.+.+++.
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~  575 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV  575 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence            479999999999999999999999999999998776543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.81  E-value=8.4e-09  Score=65.56  Aligned_cols=34  Identities=56%  Similarity=0.722  Sum_probs=27.6

Q ss_pred             EEECCCHHHHHHHHHHHHCCCc-eEEEcCCCCCCC
Q 047339            9 VIIGAGIAGLATALALKRLGIK-PLVLEKSDGLRG   42 (115)
Q Consensus         9 ~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~~~~   42 (115)
                      +||||||+|+++|..|.+.|.+ ++|+|+++.+++
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg   35 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG   35 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Confidence            6999999999999999999999 999999977754

...

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.81  E-value=7.7e-09  Score=78.96  Aligned_cols=38  Identities=29%  Similarity=0.459  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++|+||||||+||++|+.|++.|++|+|||+.+.+++
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG  343 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG  343 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc
Confidence            57999999999999999999999999999999877654

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.80  E-value=7.4e-09  Score=73.36  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=39.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI   47 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~   47 (115)
                      .++||+|||+|++||.+|..|++.|.+|+++|+++..++....+
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~   46 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL   46 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence            46999999999999999999999999999999999887666544

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.80  E-value=9.1e-09  Score=68.81  Aligned_cols=33  Identities=45%  Similarity=0.701  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +||+|||||++|+.+|..|++.|++|+|+|+.+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            589999999999999999999999999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.80  E-value=1.2e-08  Score=70.41  Aligned_cols=34  Identities=47%  Similarity=0.706  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999998764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.80  E-value=1.1e-08  Score=71.54  Aligned_cols=34  Identities=35%  Similarity=0.597  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +||+|||||.+|+++|+.|+++|.+|+|+|+.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5999999999999999999999999999999864

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.79  E-value=1e-08  Score=75.76  Aligned_cols=40  Identities=35%  Similarity=0.586  Sum_probs=37.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      |.+..+||+|||+|.+||++|+.++++|.+|+|+|+.+..
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            7788999999999999999999999999999999987654

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.79  E-value=1.2e-08  Score=73.35  Aligned_cols=39  Identities=41%  Similarity=0.658  Sum_probs=35.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||+|.+|+++|+.+++.|.+|+|+||.+..++
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG   98 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG   98 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            367999999999999999999999999999999876543

>PRK07121 hypothetical protein; Validated

Probab=98.79  E-value=1.2e-08  Score=73.09  Aligned_cols=39  Identities=41%  Similarity=0.641  Sum_probs=35.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||+|.+|+++|+.++++|.+|+|+||....++
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG   57 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG   57 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            468999999999999999999999999999999876543

>PRK14727 putative mercuric reductase; Provisional

Probab=98.78  E-value=1.1e-08  Score=73.14  Aligned_cols=43  Identities=28%  Similarity=0.449  Sum_probs=37.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~   45 (115)
                      +.++|++|||+|++|+.+|..|++.|.+|+|+|+.+..++.+.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~   56 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV   56 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence            4579999999999999999999999999999998755554443

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.78  E-value=9.6e-09  Score=72.00  Aligned_cols=34  Identities=50%  Similarity=0.767  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ||+|||+|++||++|+.++++|.+|+|+||.+..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~   34 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRL   34 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccc
Confidence            8999999999999999999999999999998874

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.77  E-value=1.1e-08  Score=72.71  Aligned_cols=36  Identities=39%  Similarity=0.530  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++||+|||+|++|+++|+.++++|.+|+|+||.+.
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            358999999999999999999999999999999863

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.77  E-value=2.5e-08  Score=69.83  Aligned_cols=42  Identities=40%  Similarity=0.671  Sum_probs=37.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~   45 (115)
                      ...||+|||+|.+||.+|+.|.+.|++|+|+|..+..+++..
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~   47 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL   47 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence            357999999999999999999999999999999888765443

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.76  E-value=1.6e-08  Score=72.25  Aligned_cols=33  Identities=39%  Similarity=0.609  Sum_probs=31.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      .++|++|||+||+|+.+|+.+++.|.+|+|+|+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            468999999999999999999999999999998

>PRK12831 putative oxidoreductase; Provisional

Probab=98.76  E-value=1.7e-08  Score=71.97  Aligned_cols=39  Identities=33%  Similarity=0.478  Sum_probs=35.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ..++|+||||||+|+++|+.|++.|++|+|+|+.+.+++
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG  177 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG  177 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            457999999999999999999999999999998776543

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.76  E-value=1.8e-08  Score=72.18  Aligned_cols=40  Identities=28%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH--CCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKR--LGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~--~g~~v~viE~~~~~~~~   43 (115)
                      .+.+|+|||+||+|+.+|..|++  .|++|+|||+.+.+++.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl   66 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL   66 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence            45789999999999999999987  79999999999887543

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.76  E-value=1.8e-08  Score=73.20  Aligned_cols=36  Identities=36%  Similarity=0.732  Sum_probs=34.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++||+|||+|.+||++|+.+++.|.+|+|+||.+
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            467999999999999999999999999999999988

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.76  E-value=1.3e-08  Score=74.22  Aligned_cols=36  Identities=42%  Similarity=0.627  Sum_probs=33.4

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..++||+|||||++|+.+|+.+++.|.+|+++|++.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            346999999999999999999999999999999874

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.75  E-value=1.5e-08  Score=75.05  Aligned_cols=34  Identities=47%  Similarity=0.677  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~  294 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEA  294 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            6999999999999999999999999999999753

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.75  E-value=1.7e-08  Score=72.50  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=31.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..+|++|||+||+|+.+|..++++|.+|+|+|+.
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            3589999999999999999999999999999973

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.75  E-value=2e-08  Score=70.23  Aligned_cols=37  Identities=46%  Similarity=0.500  Sum_probs=32.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHC-CC-ceEEEcCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRL-GI-KPLVLEKSDG   39 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~-g~-~v~viE~~~~   39 (115)
                      ...+||+|||||++|+++|+.|+++ |. +|+|+|+...
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            3468999999999999999999995 85 9999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.75  E-value=1.6e-08  Score=71.89  Aligned_cols=36  Identities=39%  Similarity=0.582  Sum_probs=32.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~   39 (115)
                      .++||+|||||++|+++|+.|+++  |.+|+|+|+...
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            468999999999999999999998  899999998754

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.75  E-value=4.8e-08  Score=71.09  Aligned_cols=39  Identities=41%  Similarity=0.721  Sum_probs=35.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||+|.+|+++|+.+++.|.+|+|+|+....++
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG   43 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG   43 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            478999999999999999999999999999999876543

>PRK10262 thioredoxin reductase; Provisional

Probab=98.75  E-value=2e-08  Score=68.29  Aligned_cols=35  Identities=26%  Similarity=0.516  Sum_probs=32.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      +..+||+||||||+|+.+|..|+++|++++++|+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            45799999999999999999999999999999954

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.74  E-value=2.6e-08  Score=70.69  Aligned_cols=50  Identities=40%  Similarity=0.601  Sum_probs=42.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCcc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPN   52 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~   52 (115)
                      +++||++|||+||+|..+|..+++.|.+|.++|+....++.+-+..+-|.
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPs   51 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPS   51 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCcccc
Confidence            46799999999999999999999999999999998766666666655543

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.74  E-value=1.3e-08  Score=70.66  Aligned_cols=34  Identities=41%  Similarity=0.629  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHH--HHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALAL--KRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l--~~~g~~v~viE~~~~~   40 (115)
                      ||+||||||+|+++|+.|  ++.|.+|+|+|+.+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  7789999999987664

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.74  E-value=1.7e-08  Score=68.87  Aligned_cols=61  Identities=28%  Similarity=0.460  Sum_probs=47.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee--------------------eeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI--------------------NFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~--------------------~~~~~~~~~l~~~g~~   63 (115)
                      ...+|+|||+|++||++|+.|+++ ++|++||.+...++....+                    -..|+...+++.+|+.
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~   85 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD   85 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence            357999999999999999999965 8999999988775543322                    1357788888988876


Q ss_pred             HH
Q 047339           64 HK   65 (115)
Q Consensus        64 ~~   65 (115)
                      ..
T Consensus        86 t~   87 (447)
T COG2907          86 TK   87 (447)
T ss_pred             Cc
Confidence            44

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=2.1e-08  Score=73.53  Aligned_cols=37  Identities=35%  Similarity=0.493  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~   47 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT   47 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4589999999999999999999999999999997643

>PRK02106 choline dehydrogenase; Validated

Probab=98.73  E-value=1.9e-08  Score=73.12  Aligned_cols=39  Identities=41%  Similarity=0.505  Sum_probs=36.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~   39 (115)
                      |.+.++|+||||+|++|+.+|..|++ .|++|+|+|+.+.
T Consensus         1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            66778999999999999999999999 8999999999853

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.72  E-value=2.2e-08  Score=70.07  Aligned_cols=33  Identities=30%  Similarity=0.638  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ||+|||||.+|+++|+.|+++|++|+|+|+...
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            899999999999999999999999999999754

>PLN02507 glutathione reductase

Probab=98.71  E-value=2.8e-08  Score=71.45  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +||++|||+||+|+.+|..+++.|.+|+|+|+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.71  E-value=3e-08  Score=71.92  Aligned_cols=38  Identities=42%  Similarity=0.609  Sum_probs=34.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            45789999999999999999999999999999998764

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.71  E-value=2.9e-08  Score=70.16  Aligned_cols=35  Identities=43%  Similarity=0.708  Sum_probs=32.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLR   41 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~   41 (115)
                      ||+|||+|.+|+++|+.++++| .+|+|+||.+..+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~g   36 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIG   36 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCC
Confidence            7999999999999999999999 9999999987654

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.70  E-value=3.1e-08  Score=72.83  Aligned_cols=37  Identities=41%  Similarity=0.475  Sum_probs=34.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~   64 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT   64 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence            4689999999999999999999999999999997654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.70  E-value=2.6e-08  Score=71.57  Aligned_cols=38  Identities=37%  Similarity=0.526  Sum_probs=33.5

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG   39 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~   39 (115)
                      ...++||+|||||++|+++|+.|++.  |.+|+|+||...
T Consensus         2 ~~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          2 EESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             CCccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            34568999999999999999999984  789999999764

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.69  E-value=4.2e-08  Score=69.73  Aligned_cols=38  Identities=39%  Similarity=0.456  Sum_probs=34.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..++|+|||+|++|+++|..|++.|++|+|+|+.+.++
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G  169 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG  169 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            35799999999999999999999999999999987654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.69  E-value=3.2e-08  Score=62.69  Aligned_cols=33  Identities=64%  Similarity=0.906  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ||+|||||++|+.+|..|++.+++++|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            699999999999999999999999999988764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.69  E-value=3.5e-08  Score=75.43  Aligned_cols=39  Identities=44%  Similarity=0.607  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++|+||||||+|+++|+.|++.|++|+|+|+.+.+++.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~  577 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV  577 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcc
Confidence            468999999999999999999999999999998776543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.68  E-value=3.9e-08  Score=72.74  Aligned_cols=38  Identities=45%  Similarity=0.619  Sum_probs=34.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++|+|||+||+||++|..|++.|++|+|+|+.+.+++
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG  364 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG  364 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            47999999999999999999999999999999877643

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.68  E-value=3.8e-08  Score=71.00  Aligned_cols=37  Identities=32%  Similarity=0.536  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .++||+|||+| +|+++|+.+++.|.+|+|+||.+..+
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            46899999999 99999999999999999999987643

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.68  E-value=2.3e-08  Score=67.18  Aligned_cols=35  Identities=37%  Similarity=0.501  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~   40 (115)
                      ||+||||+|++|+++|..|++.+ .+|+|+|+....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            69999999999999999999997 799999998764

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.68  E-value=4.1e-08  Score=66.33  Aligned_cols=38  Identities=34%  Similarity=0.595  Sum_probs=35.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      +|++|||+|++|+..|..|++.|.+|+|+|+.+..++.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN   39 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN   39 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence            79999999999999999999999999999999988653

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.68  E-value=3.3e-08  Score=71.00  Aligned_cols=38  Identities=29%  Similarity=0.460  Sum_probs=33.1

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHC-C-CceEEEcCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRL-G-IKPLVLEKSDG   39 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~-g-~~v~viE~~~~   39 (115)
                      .+..+||+|||||++|+++|+.|++. + .+|+|+|+.+.
T Consensus        42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~   81 (497)
T PTZ00383         42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD   81 (497)
T ss_pred             cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence            34578999999999999999999996 3 69999999763

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.67  E-value=6.7e-08  Score=70.45  Aligned_cols=39  Identities=38%  Similarity=0.702  Sum_probs=35.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.++||+|||+| +|+++|+.+++.|.+|+|+||.+..++
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG   52 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG   52 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence            357899999999 899999999999999999999877654

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.67  E-value=4.5e-08  Score=71.66  Aligned_cols=36  Identities=19%  Similarity=0.396  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.||+|||+|.+||++|+.++++|.+|+|+||....
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            469999999999999999999999999999987654

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.66  E-value=4.9e-08  Score=72.11  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +++||+|||+|.+||++|+.+++.|.+|+|+|+...+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            4689999999999999999999999999999986543

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.66  E-value=4.5e-08  Score=75.28  Aligned_cols=38  Identities=39%  Similarity=0.645  Sum_probs=35.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .+||+||||||+||++|+.+++.|++|+|+|+.+..++
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG  200 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG  200 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            57999999999999999999999999999999877654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.66  E-value=3.6e-08  Score=71.37  Aligned_cols=40  Identities=43%  Similarity=0.560  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      +++|+|||||++||++|..|.+.|++++++|+++..++..
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W   40 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW   40 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC
Confidence            3689999999999999999999999999999999886643

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.66  E-value=5.1e-08  Score=73.15  Aligned_cols=38  Identities=34%  Similarity=0.421  Sum_probs=34.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..++|+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G  467 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG  467 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            35799999999999999999999999999999976654

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.66  E-value=6.3e-08  Score=70.23  Aligned_cols=39  Identities=41%  Similarity=0.512  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCCCCc
Q 047339            5 EKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLRGT   43 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~~~~   43 (115)
                      +.+++|||||++||++|++|.+.    |.+|+|+|+.+.+++.
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~   64 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS   64 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence            47899999999999999999995    6899999999887654

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.65  E-value=3.4e-08  Score=70.79  Aligned_cols=34  Identities=35%  Similarity=0.558  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~   39 (115)
                      +||+|||||++|+++|+.|++.  |.+|+|+|+...
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~   36 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA   36 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            5899999999999999999996  999999999654

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.65  E-value=4.8e-08  Score=67.86  Aligned_cols=34  Identities=35%  Similarity=0.581  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      ||+|||||++|+++|+.|++.  |++|+|+|+.+..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~   36 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI   36 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            799999999999999999987  9999999997644

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.65  E-value=4.1e-08  Score=75.57  Aligned_cols=38  Identities=37%  Similarity=0.463  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++|+||||||+||++|..|++.|++|+|||+.+.+++
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG  467 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG  467 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcc
Confidence            46899999999999999999999999999998876643

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.65  E-value=4.5e-08  Score=71.89  Aligned_cols=37  Identities=38%  Similarity=0.644  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      .++||+|||+|.+||++|+.+++.  |.+|+|+||....
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            368999999999999999999998  9999999997653

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.65  E-value=5e-08  Score=71.96  Aligned_cols=37  Identities=32%  Similarity=0.418  Sum_probs=33.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~   85 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT   85 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            4579999999999999999999999999999998654

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.65  E-value=4.6e-08  Score=68.98  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+|+|||||++|+.+|+.|++.|++|+|+|+.+..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            37999999999999999999999999999987653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.65  E-value=4.7e-08  Score=69.25  Aligned_cols=40  Identities=40%  Similarity=0.745  Sum_probs=36.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      +..+++|||||++|+++|+.|+..|++|.++|+++..+++
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr  162 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR  162 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            4578999999999999999999999999999999987653

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.65  E-value=5.1e-08  Score=69.03  Aligned_cols=37  Identities=38%  Similarity=0.580  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +++||+|||+|.+||++|+.+. .|.+|+|+||.+..+
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~g   39 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNE   39 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCC
Confidence            5689999999999999999985 799999999987653

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.65  E-value=6.1e-08  Score=69.26  Aligned_cols=41  Identities=32%  Similarity=0.233  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHH-HHCCCceEEEcCCCCCCCcce
Q 047339            5 EKDVVIIGAGIAGLATALAL-KRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l-~~~g~~v~viE~~~~~~~~~~   45 (115)
                      +.+|+|||+||+|+.+|..| ++.|++|+|||+.+.+++..+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR   80 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR   80 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE
Confidence            56899999999999999965 567999999999998865433

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.64  E-value=5.1e-08  Score=69.91  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~   37 (115)
                      .++|++|||+||+|+.+|..+++. |.+|+|+|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            469999999999999999999996 9999999974

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.64  E-value=4.9e-08  Score=68.69  Aligned_cols=38  Identities=47%  Similarity=0.705  Sum_probs=35.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~   41 (115)
                      +++||+|||||+.|+++|+.|++.+  ++|+|+||...+.
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a   41 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA   41 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence            5689999999999999999999998  9999999988763

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.64  E-value=5.9e-08  Score=71.02  Aligned_cols=39  Identities=38%  Similarity=0.629  Sum_probs=35.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||+|.+|+++|+.++++|.+|+|+||....++
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            468999999999999999999999999999999876543

>PLN02546 glutathione reductase

Probab=98.64  E-value=5.5e-08  Score=70.78  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      .+||++|||+||+|+.+|..+++.|.+|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            358999999999999999999999999999996

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.63  E-value=7.8e-08  Score=68.72  Aligned_cols=38  Identities=45%  Similarity=0.658  Sum_probs=34.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++|+|||+|++|+++|..|++.|++|+|+|+.+..++
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG  180 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG  180 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            47899999999999999999999999999999877643

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=98.63  E-value=2.8e-07  Score=64.18  Aligned_cols=79  Identities=27%  Similarity=0.367  Sum_probs=61.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCC--CC-------cceeeeeCccHHHHHHHcCChHHHhcc-
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGL--RG-------TGAAINFAPNAWLALDALGVSHKLASI-   69 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~--~~-------~~~~~~~~~~~~~~l~~~g~~~~i~~~-   69 (115)
                      .++||+||||||+|+++|..|..+    ..+|.++|....+  +.       .-+-..+++.....++.+|+|+.+... 
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R  114 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR  114 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence            479999999999999999999864    3689999976322  11       224467788899999999999999864 


Q ss_pred             cCCcceEEEEECC
Q 047339           70 YDPVKRLFVTNLR   82 (115)
Q Consensus        70 ~~~~~~~~~~~~~   82 (115)
                      ..++++..+++.-
T Consensus       115 ~~~~~~~~v~Ds~  127 (481)
T KOG3855|consen  115 YQKFSRMLVWDSC  127 (481)
T ss_pred             cccccceeeeccc
Confidence            5667777777644

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.63  E-value=5.4e-08  Score=74.10  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..++|+|||+||+|+++|+.|++.|++|+|+|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            35799999999999999999999999999999753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.63  E-value=9.8e-08  Score=69.83  Aligned_cols=40  Identities=40%  Similarity=0.644  Sum_probs=35.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.++||+|||+|++|+++|+.+++.|.+|+|+|+.+..++
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg   49 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG   49 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            3578999999999999999999999999999999876433

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.62  E-value=8e-08  Score=68.38  Aligned_cols=38  Identities=39%  Similarity=0.524  Sum_probs=34.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..++|+|||||++|+.+|..|++.|++|+|+|+.+..+
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g  176 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG  176 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence            35799999999999999999999999999999987654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.62  E-value=9e-08  Score=70.80  Aligned_cols=49  Identities=33%  Similarity=0.546  Sum_probs=40.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC-CCCCcceeeeeCcc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD-GLRGTGAAINFAPN   52 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~-~~~~~~~~~~~~~~   52 (115)
                      .+||++|||+|++|..+|..+++.|.+|+|+|+.. ..++.+-+..+-|.
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPs  164 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPS  164 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcch
Confidence            46899999999999999999999999999999753 45666665555543

>PRK08275 putative oxidoreductase; Provisional

Probab=98.62  E-value=7.4e-08  Score=70.10  Aligned_cols=36  Identities=39%  Similarity=0.642  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~   39 (115)
                      +++||+|||+|.+||++|+.+++.  |.+|+|+||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            568999999999999999999986  689999999875

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.61  E-value=7.3e-08  Score=70.23  Aligned_cols=34  Identities=41%  Similarity=0.648  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ||+|||+|++|+++|+.+++.|.+|+|+||....
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~   34 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT   34 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            7999999999999999999999999999997653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.61  E-value=7.2e-08  Score=69.62  Aligned_cols=34  Identities=32%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..+|++||||||+|+++|.+|++.|++|+|++..
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~  243 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER  243 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4689999999999999999999999999999764

>PLN02529 lysine-specific histone demethylase 1

Probab=98.61  E-value=9.6e-08  Score=71.29  Aligned_cols=40  Identities=45%  Similarity=0.663  Sum_probs=35.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .+++|+|||||++|+++|..|+++|++|+|+|+.+..++.
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~  198 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR  198 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence            3579999999999999999999999999999998876543

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.61  E-value=7.8e-08  Score=67.83  Aligned_cols=35  Identities=37%  Similarity=0.628  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |++||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            46899999999999999999999999999999864

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.60  E-value=1.4e-07  Score=68.43  Aligned_cols=38  Identities=26%  Similarity=0.201  Sum_probs=34.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      +||+|||+||+|+++|..|+++|++|+++|+....+..
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~   38 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL   38 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence            59999999999999999999999999999998876543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN02676 polyamine oxidase

Probab=98.60  E-value=1.2e-07  Score=68.05  Aligned_cols=38  Identities=39%  Similarity=0.742  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~~~   42 (115)
                      .+||+|||||++||++|+.|+++|. +|+|+|+....++
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            5799999999999999999999998 6999999887655

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.60  E-value=8.3e-08  Score=70.22  Aligned_cols=39  Identities=36%  Similarity=0.492  Sum_probs=34.2

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      ++.++||+|||+|.+||++|+.+++.  |.+|+|+||....
T Consensus         1 ~t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          1 QTFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             CceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            35678999999999999999999987  4899999998654

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.60  E-value=7e-08  Score=68.87  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +||+|||+|++||++|+.+++.|.+|+|+||...
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            7999999999999999999999999999999754

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.60  E-value=7.2e-08  Score=72.46  Aligned_cols=40  Identities=40%  Similarity=0.595  Sum_probs=35.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .+.+|+|||||++|+.+|+.|++.|++|+|+|++..+++.
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr  276 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR  276 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence            3578999999999999999999999999999998877543

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=1e-07  Score=69.79  Aligned_cols=39  Identities=36%  Similarity=0.404  Sum_probs=34.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      |...++||+|||+|.+||++|+.+++. .+|+|+||....
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~   39 (583)
T PRK08205          1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT   39 (583)
T ss_pred             CcceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence            445678999999999999999999976 999999997643

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.59  E-value=1.2e-07  Score=69.51  Aligned_cols=37  Identities=38%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~   42 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT   42 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4579999999999999999999999999999997553

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.59  E-value=9.3e-08  Score=69.03  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=30.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      ..+||+||||||+|+++|..|++.|++|+|++.
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~  243 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE  243 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            458999999999999999999999999999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.59  E-value=1.6e-07  Score=65.64  Aligned_cols=66  Identities=29%  Similarity=0.399  Sum_probs=48.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCce--EEEcCCCCCCCccee-----eee--------C---c---cHHHHHHHcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKP--LVLEKSDGLRGTGAA-----INF--------A---P---NAWLALDALGV   62 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v--~viE~~~~~~~~~~~-----~~~--------~---~---~~~~~l~~~g~   62 (115)
                      +.++++|||||++||++|++|++.+-++  +|+|+.+..++.-+.     ..+        .   +   +.++.+..+|+
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl   89 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL   89 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence            4579999999999999999999998665  569998877553222     111        1   1   35677888998


Q ss_pred             hHHHhcc
Q 047339           63 SHKLASI   69 (115)
Q Consensus        63 ~~~i~~~   69 (115)
                      .+++...
T Consensus        90 ~~e~~~i   96 (491)
T KOG1276|consen   90 EDELQPI   96 (491)
T ss_pred             cceeeec
Confidence            8776543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.58  E-value=1.2e-07  Score=70.21  Aligned_cols=38  Identities=39%  Similarity=0.549  Sum_probs=34.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++|+|||+||+|+++|..|++.|++|+|+|+.+.+++
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG  230 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG  230 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            46899999999999999999999999999999877643

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.58  E-value=1.1e-07  Score=74.29  Aligned_cols=40  Identities=30%  Similarity=0.598  Sum_probs=36.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.+.||+|||+|.+|+++|+.+++.|.+|+|+||.+..++
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG  446 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG  446 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            5678999999999999999999999999999999876544

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.58  E-value=1e-07  Score=66.42  Aligned_cols=35  Identities=40%  Similarity=0.720  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEE-cCCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVL-EKSDGLR   41 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~vi-E~~~~~~   41 (115)
                      ||+|||||+||+.+|+.+++.|.+|+|+ ++.+...
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~   36 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG   36 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence            7999999999999999999999999999 3433343

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02815 L-aspartate oxidase

Probab=98.58  E-value=1.1e-07  Score=69.74  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=33.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .++||+|||+|.+||++|+.+++.| +|+|+||....+
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~g   64 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHE   64 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCC
Confidence            4689999999999999999999999 999999987643

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.58  E-value=1e-07  Score=68.46  Aligned_cols=37  Identities=38%  Similarity=0.482  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      ..+||+|||||++|+++|+.|++.  +.+|+|+||.+.+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~   43 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP   43 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence            457999999999999999999998  8999999994444

>TIGR00551 nadB L-aspartate oxidase

Probab=98.56  E-value=1.4e-07  Score=67.73  Aligned_cols=35  Identities=49%  Similarity=0.634  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ++||+|||+|++||++|+.+++.|. |+|+||.+..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~   36 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVT   36 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCC
Confidence            5799999999999999999999998 9999998654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.56  E-value=1.3e-07  Score=68.90  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +.++||+|||+|.+|+++|+.++ .|.+|+|+||.+..+
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~g   44 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKT   44 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCC
Confidence            45789999999999999999986 599999999987643

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.56  E-value=1.1e-07  Score=69.44  Aligned_cols=37  Identities=43%  Similarity=0.738  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      .++||+|||+|.+||++|+.+++.  |.+|+|+||....
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~   40 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI   40 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence            457999999999999999999987  4899999997653

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.55  E-value=1.5e-07  Score=68.24  Aligned_cols=37  Identities=41%  Similarity=0.453  Sum_probs=33.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.++||+|||+|.+||++|+.+++. .+|+|+||....
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            3568999999999999999999886 899999998754

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.55  E-value=1.5e-07  Score=67.56  Aligned_cols=33  Identities=33%  Similarity=0.565  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ++|++|||+||+|+.+|+.+++.|.+|.++|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            689999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12839 hypothetical protein; Provisional

Probab=98.55  E-value=1.7e-07  Score=68.49  Aligned_cols=40  Identities=43%  Similarity=0.575  Sum_probs=35.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.++||+|||+|.+|+++|+.+++.|.+|+|+|+....++
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg   45 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG   45 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            4578999999999999999999999999999999876543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.54  E-value=1.8e-07  Score=68.15  Aligned_cols=41  Identities=41%  Similarity=0.535  Sum_probs=36.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      |...++||+|||+|.+||.+|+.++..|.+|.|+||....+
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            45678999999999999999999999999999999977653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.54  E-value=2e-07  Score=66.65  Aligned_cols=38  Identities=42%  Similarity=0.649  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ..+|+|||+||+|+++|..|++.|++|+|+|+.+.+++
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG  178 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG  178 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence            47899999999999999999999999999999877643

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.53  E-value=1.3e-07  Score=68.62  Aligned_cols=35  Identities=31%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++||+|||+|.+||++|+.+ +.|.+|+|+||...
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            568999999999999999999 89999999999754

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.52  E-value=2.3e-07  Score=68.62  Aligned_cols=37  Identities=35%  Similarity=0.537  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+|+|||+||+|+++|..|++.|++|+|+|+.+.++
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G  346 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG  346 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            5789999999999999999999999999999988764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.52  E-value=1.9e-07  Score=68.31  Aligned_cols=38  Identities=32%  Similarity=0.490  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~   41 (115)
                      .++||+|||+|++||++|+.+++.  |.+|+|+||....+
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~   41 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR   41 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence            468999999999999999999986  58999999986543

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR00275 flavoprotein, HI0933 family

Probab=98.50  E-value=1.1e-07  Score=66.74  Aligned_cols=33  Identities=42%  Similarity=0.701  Sum_probs=30.7

Q ss_pred             EEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            9 VIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         9 ~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +|||||++|+++|+.|+++|++|+|+|+++..+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G   33 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG   33 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccc
Confidence            599999999999999999999999999988654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.50  E-value=3.4e-07  Score=63.13  Aligned_cols=39  Identities=46%  Similarity=0.488  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ...+|+|||+|++|+.+|..|++.|++|+++|+.+.+++
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg   55 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG   55 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence            457999999999999999999999999999999877643

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.49  E-value=2.7e-07  Score=65.75  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +++|||+||+|+.+|..+++.|.+|+|+|+...
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            799999999999999999999999999998753

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.46  E-value=3.2e-07  Score=66.25  Aligned_cols=36  Identities=33%  Similarity=0.494  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ++||+|||+|.+||++|+.+++ |.+|+|+||.+..+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~   38 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRN   38 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCC
Confidence            5799999999999999999976 89999999987643

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.45  E-value=3.1e-07  Score=64.84  Aligned_cols=45  Identities=51%  Similarity=0.696  Sum_probs=37.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCCcceeeee
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGTGAAINF   49 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~~~~~~~~   49 (115)
                      ..+|+|||||++||++|..|.++| .+++|+|..+..+++-.++.+
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~   66 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPF   66 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEc
Confidence            468999999999999999998666 689999999988765554333

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.44  E-value=3.5e-07  Score=62.23  Aligned_cols=36  Identities=36%  Similarity=0.656  Sum_probs=33.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |++||+|||||++|++.|+.|+++|.++.|+.+.+.
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            579999999999999999999999999999987664

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.44  E-value=4.6e-07  Score=66.31  Aligned_cols=39  Identities=41%  Similarity=0.669  Sum_probs=35.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||+|++|+++|+.++++|++|+|+|+....++
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg   53 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG   53 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            467999999999999999999999999999999876543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.43  E-value=4.3e-07  Score=66.28  Aligned_cols=38  Identities=39%  Similarity=0.629  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ..+|+|||+||+||++|..|++.|++|+|+|+.+..++
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG  174 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG  174 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            36899999999999999999999999999999877643

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.43  E-value=3.4e-07  Score=69.97  Aligned_cols=36  Identities=39%  Similarity=0.583  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            468999999999999999999999999999998764

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.42  E-value=4.5e-07  Score=66.75  Aligned_cols=33  Identities=30%  Similarity=0.622  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHH----HCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALK----RLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~----~~g~~v~viE~~~~   39 (115)
                      ||+|||+|.+||++|+.++    +.|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            7999999999999999998    67999999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.41  E-value=5.9e-07  Score=64.52  Aligned_cols=37  Identities=41%  Similarity=0.553  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+|+|||+|++|+.+|..|++.|++|+|+|+.+.++
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g  179 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG  179 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            3699999999999999999999999999999887653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.41  E-value=4.5e-07  Score=62.84  Aligned_cols=48  Identities=35%  Similarity=0.567  Sum_probs=41.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAP   51 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~   51 (115)
                      .++|++|||+||.|..+|+.+++.|.+..++|++...++..-+..+-|
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIP   85 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIP   85 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccc
Confidence            358999999999999999999999999999999988877666554433

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.39  E-value=4.4e-07  Score=65.57  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=32.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |.+.+.||+|||+|.+||++|+.++  +.+|+|+||...
T Consensus         5 ~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          5 LRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             ccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            3456899999999999999999886  579999999875

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.38  E-value=5.4e-07  Score=61.41  Aligned_cols=38  Identities=42%  Similarity=0.573  Sum_probs=34.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +..+++|||||.-|+++|+.|+++|.+++++|+-+.+.
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph   43 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH   43 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence            45799999999999999999999999999999887764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.38  E-value=7.1e-07  Score=62.83  Aligned_cols=34  Identities=41%  Similarity=0.640  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|++|||+|++|+++|+.+++.|.+|.|+|+...
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence            5899999999999999999999999999998753

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN03000 amine oxidase

Probab=98.37  E-value=8.5e-07  Score=67.18  Aligned_cols=39  Identities=46%  Similarity=0.668  Sum_probs=35.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      ..+|+|||||++|+.+|..|.+.|++|+|+|+.+.+++.
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR  222 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR  222 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence            579999999999999999999999999999998877553

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.37  E-value=4.7e-07  Score=65.82  Aligned_cols=37  Identities=41%  Similarity=0.540  Sum_probs=33.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+++|++|||+|.+|+++|..|+..|++|+|+|+...
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~   41 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP   41 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence            3579999999999999999999999999999998754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.36  E-value=8.9e-07  Score=63.27  Aligned_cols=33  Identities=36%  Similarity=0.605  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+++|||+|++|+.+|..+++.|.+|+|+|+..
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            589999999999999999999999999999865

>PLN02976 amine oxidase

Probab=98.33  E-value=1.2e-06  Score=69.12  Aligned_cols=40  Identities=38%  Similarity=0.596  Sum_probs=35.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      ..++|+|||+|++|+.+|+.|.+.|++|+|+|+.+.+++.
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr  731 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR  731 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence            4579999999999999999999999999999998776543

>PRK13984 putative oxidoreductase; Provisional

Probab=98.31  E-value=1.4e-06  Score=64.01  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+|+|||+|++|+++|..|++.|++|+|+|+.+.++
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g  319 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG  319 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            5689999999999999999999999999999987654

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.30  E-value=8e-07  Score=65.40  Aligned_cols=31  Identities=32%  Similarity=0.547  Sum_probs=29.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            8 VVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+|||+|++||++|+.+++.|.+|+|+||..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            6899999999999999999999999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.30  E-value=9.4e-07  Score=62.98  Aligned_cols=58  Identities=34%  Similarity=0.349  Sum_probs=43.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce-e-------eeeCccHHHHHHHcCCh
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA-A-------INFAPNAWLALDALGVS   63 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~-~-------~~~~~~~~~~l~~~g~~   63 (115)
                      .+|+|||+||+||.+|..|++.|+.|+++|+.+.+++.-. +       -.+....++.|+..|+.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~  189 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVE  189 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeE
Confidence            6899999999999999999999999999999887643211 1       11223455677777643

>TIGR01810 betA choline dehydrogenase

Probab=98.30  E-value=7.8e-07  Score=64.50  Aligned_cols=33  Identities=39%  Similarity=0.384  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~   39 (115)
                      |+||||+|.+|+.+|..|++.+ ++|+|+|+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            7999999999999999999998 79999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.27  E-value=2.5e-06  Score=58.56  Aligned_cols=38  Identities=34%  Similarity=0.666  Sum_probs=34.1

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +....|++|||+|++||.+|..|+.+|.+|+|+|+...
T Consensus         2 d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           2 DGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             CcccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            44578999999999999999999999999999997554

>PLN02785 Protein HOTHEAD

Probab=98.25  E-value=1.8e-06  Score=63.43  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=32.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|+||||+|.+|+.+|..|++ +.+|+|+|+...
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            46999999999999999999999 699999999764

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.23  E-value=6.1e-07  Score=64.44  Aligned_cols=58  Identities=29%  Similarity=0.383  Sum_probs=47.1

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC-cceeeeeCccHHHHHHH
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-TGAAINFAPNAWLALDA   59 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~-~~~~~~~~~~~~~~l~~   59 (115)
                      ++.++||+|||||.+|.-.|+=.+-+|.++.++|+.++.++ ++++.-+-+.+.++|++
T Consensus        64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek  122 (680)
T KOG0042|consen   64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK  122 (680)
T ss_pred             cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHH
Confidence            35679999999999999999999999999999999998643 55665555666666653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.23  E-value=2.5e-06  Score=62.60  Aligned_cols=34  Identities=44%  Similarity=0.618  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +||+|||+|++|+.+|..+++.|.+|+|+|++..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~   34 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD   34 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence            5899999999999999999999999999998743

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.20  E-value=3.6e-06  Score=58.94  Aligned_cols=36  Identities=28%  Similarity=0.501  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~~   40 (115)
                      +.+|+|||||++|+.+|..|++.|.  +|+|+++.+..
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            3589999999999999999999886  79999987653

>PRK07846 mycothione reductase; Reviewed

Probab=98.18  E-value=2.8e-06  Score=60.55  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI   47 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~   47 (115)
                      +||++|||+||+|..+|..  +.|.+|.|+|+.. .++.+.+.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~   40 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNV   40 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCc
Confidence            4899999999999988865  4699999999853 34444433

>PRK09897 hypothetical protein; Provisional

Probab=98.17  E-value=3.9e-06  Score=60.98  Aligned_cols=36  Identities=28%  Similarity=0.465  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLR   41 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~   41 (115)
                      ++|+|||||++|+++|..|.+.+  .+|+|+|++..++
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            58999999999999999998864  5899999976553

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.15  E-value=3.5e-06  Score=59.70  Aligned_cols=34  Identities=38%  Similarity=0.580  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~   40 (115)
                      +|+|||||++|+.+|..|++.+  .+|+|+|+++..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            7999999999999999999875  589999998754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.15  E-value=4.5e-06  Score=59.28  Aligned_cols=35  Identities=23%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      .+|+|||||++|+.+|..|++.  +++|+|+|+.+..
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            4899999999999999999886  6899999998754

>TIGR03452 mycothione_red mycothione reductase

Probab=98.13  E-value=4.8e-06  Score=59.36  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI   47 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~   47 (115)
                      +||++|||+||+|..+|.  ++.|.+|.|+|+.. .++.+.+.
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~-~GGtC~n~   41 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT-FGGTCLNV   41 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC-CCCeeecc
Confidence            589999999999999864  45799999999853 34444433

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=98.12  E-value=5.7e-06  Score=57.40  Aligned_cols=38  Identities=32%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHH--CCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKR--LGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~--~g~~v~viE~~~~~~~   42 (115)
                      .+.|+|||+||+|+.+|..|.+  .++.|+|+|+.+.+-+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            4589999999999999998888  4699999999988743

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.09  E-value=5.5e-06  Score=57.58  Aligned_cols=57  Identities=37%  Similarity=0.439  Sum_probs=43.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV   62 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~   62 (115)
                      .+++|||+|+.|+.+|..|+++|++|+++|+.+.+.+......+.....+.++..|+
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi  193 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGV  193 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCc
Confidence            689999999999999999999999999999988875443221223334456666663

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=4.9e-06  Score=56.82  Aligned_cols=36  Identities=25%  Similarity=0.485  Sum_probs=32.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++..|-|||||++|..+|+.++++|++|.++|..+.
T Consensus         2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            445789999999999999999999999999997765

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.04  E-value=5.9e-06  Score=64.08  Aligned_cols=37  Identities=49%  Similarity=0.640  Sum_probs=34.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ++|.|||+||+||.+|-.|.+.|+.|+||||.+.+++
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            6899999999999999999999999999999988753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.03  E-value=1.2e-05  Score=55.94  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~   39 (115)
                      +.+++|||||++|+.+|..|.+.  ..+|+|+++.+.
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            46899999999999999999885  468999988765

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.01  E-value=5.4e-06  Score=58.70  Aligned_cols=30  Identities=40%  Similarity=0.716  Sum_probs=28.5

Q ss_pred             EECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339           10 IIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus        10 IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |||+|.+|+++|+.++++|.+|+|+||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            799999999999999999999999999774

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.01  E-value=1e-05  Score=57.24  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|+|||||.+|+.+|..|.+.+++|+|+|+++..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            3579999999999999999998778999999987654

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.00  E-value=1.1e-05  Score=55.48  Aligned_cols=36  Identities=44%  Similarity=0.625  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~   40 (115)
                      ..||+|||||..|++.|++|+++    |++|+|+|++..-
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            57999999999999999999883    6999999998764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.99  E-value=1.5e-05  Score=54.28  Aligned_cols=38  Identities=32%  Similarity=0.392  Sum_probs=34.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |++.+++|+|||+|..|..+|..|++.|++|+++.+..
T Consensus         1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            66777899999999999999999999999999998754

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=1.3e-05  Score=55.07  Aligned_cols=41  Identities=34%  Similarity=0.497  Sum_probs=34.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcC-CCCCCCc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEK-SDGLRGT   43 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~-~~~~~~~   43 (115)
                      +.+||.+|||||.+||++|..++..|.+|.++|- .+.|.++
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~Gt   58 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGT   58 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCC
Confidence            5689999999999999999999999999999995 3344333

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.94  E-value=2.7e-06  Score=54.96  Aligned_cols=59  Identities=36%  Similarity=0.495  Sum_probs=41.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCCcc-eeeee------CccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTG-AAINF------APNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~~~-~~~~~------~~~~~~~l~~~g~~   63 (115)
                      ..||+|||+|.+||++|+..+++  ..+|.|+|.+-.+++.. .+.++      +..+.-+|+++|+.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~Eigvp  143 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVP  143 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCC
Confidence            46999999999999999998864  58999999877765433 23222      22233466666654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.93  E-value=1.8e-05  Score=55.54  Aligned_cols=35  Identities=34%  Similarity=0.461  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|||+|+.|+.+|..|++.|.+|+|+|+.+.+
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  179 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATV  179 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            57999999999999999999999999999987765

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.90  E-value=1.9e-05  Score=56.35  Aligned_cols=33  Identities=45%  Similarity=0.599  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ||+|||+|.+||++|+.|.+. ++|+|+-|.+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            899999999999999999988 999999987754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.89  E-value=3.2e-05  Score=54.87  Aligned_cols=58  Identities=26%  Similarity=0.282  Sum_probs=41.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||||++|+.+|..+++.|.+|+++|+.+...+.. .-.+.....+.|+..|+.
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-~~~~~~~~~~~l~~~GI~  214 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE-EPSVAALAKQYMEEDGIT  214 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC-CHHHHHHHHHHHHHcCCE
Confidence            4689999999999999999999999999999987653221 111112233455666654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.89  E-value=2.5e-05  Score=54.39  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+..
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~  176 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL  176 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence            57999999999999999999999999999987664

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.88  E-value=2.4e-05  Score=48.26  Aligned_cols=32  Identities=28%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|+|+|||..|.++|..|+.+|++|.++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999998864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.87  E-value=4e-05  Score=50.02  Aligned_cols=57  Identities=19%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-------CcceeeeeCccHHHHHHHcCCh
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-------GTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-------~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +++|+|+|..|..+|..|.+.|+.|+++|+++...       .....+.........|++.|+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~   65 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID   65 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence            79999999999999999999999999999876531       1233444445556678877765

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.87  E-value=2e-05  Score=57.72  Aligned_cols=37  Identities=27%  Similarity=0.359  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~   40 (115)
                      ..||.||||||-+||.+|..|++. ..+|+|+|+...+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            479999999999999999999985 5899999987665

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.86  E-value=3.6e-05  Score=55.17  Aligned_cols=58  Identities=31%  Similarity=0.457  Sum_probs=41.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||++|+.+|..|++.|.+|+++|+.+.+.... ...+.....+.|+..|+.
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~-~~~~~~~l~~~l~~~gI~  237 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTE-DAELSKEVARLLKKLGVR  237 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcC-CHHHHHHHHHHHHhcCCE
Confidence            4689999999999999999999999999999887643211 111222234456666654

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.85  E-value=1.3e-05  Score=54.57  Aligned_cols=38  Identities=42%  Similarity=0.593  Sum_probs=33.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      ...+|++|||||++|++.|..|.-+  +.+|.|+|+....
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            4579999999999999999988876  8999999987654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.85  E-value=4e-05  Score=54.69  Aligned_cols=58  Identities=21%  Similarity=0.254  Sum_probs=42.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||||..|+-+|..|++.|.+|+++++.+.+.. ...-.+.....+.|+..|+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~gI~  223 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-SFDSMISETITEEYEKEGIN  223 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccCHHHHHHHHHHHHHcCCE
Confidence            46899999999999999999999999999998876532 11112233345566666654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.83  E-value=4.1e-05  Score=54.13  Aligned_cols=35  Identities=34%  Similarity=0.598  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|||+|++|+.+|..|++.|.+|+++++.+..
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            58999999999999999999999999999987654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=2.6e-05  Score=50.84  Aligned_cols=33  Identities=39%  Similarity=0.596  Sum_probs=30.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      ..-+|+|||+||++.++|++++++..+.+++|-
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG   39 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEG   39 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhcccCceEEee
Confidence            445899999999999999999999999999994

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.81  E-value=5.6e-05  Score=54.01  Aligned_cols=58  Identities=26%  Similarity=0.317  Sum_probs=41.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|++|+.+|..+.+.|.+|+++++.+.+... ....+.....+.|++.|+.
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~  227 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVK  227 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCE
Confidence            468999999999999999999999999999987765321 1111222334456666654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=1.2e-05  Score=55.54  Aligned_cols=32  Identities=34%  Similarity=0.517  Sum_probs=28.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      ..|||+||||||+|.++|++.++.|++.-++.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a  241 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA  241 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh
Confidence            36899999999999999999999999887664

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.79  E-value=3.5e-05  Score=47.47  Aligned_cols=31  Identities=35%  Similarity=0.388  Sum_probs=27.2

Q ss_pred             EEECCCHHHHHHHHHHHHC-----CCceEEEcCCCC
Q 047339            9 VIIGAGIAGLATALALKRL-----GIKPLVLEKSDG   39 (115)
Q Consensus         9 ~IvG~G~~Gl~~A~~l~~~-----g~~v~viE~~~~   39 (115)
                      +|||+|++|++++..|.+.     ..+|+|||+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999887     478999998554

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.79  E-value=6.3e-05  Score=53.90  Aligned_cols=59  Identities=32%  Similarity=0.414  Sum_probs=42.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+.+++|||+|+.|+.+|..+++.|.+|+++|+.+.+... ....+.....+.|+..|+.
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~  231 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTKQGMK  231 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCE
Confidence            3578999999999999999999999999999987765321 1111222344556666654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.77  E-value=7.3e-05  Score=53.48  Aligned_cols=39  Identities=36%  Similarity=0.537  Sum_probs=35.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .+.+++|||||+.|+-+|..+++.|.+|+|+|+.+...+
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp  210 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP  210 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            567899999999999999999999999999999988643

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.77  E-value=6.4e-05  Score=53.48  Aligned_cols=45  Identities=38%  Similarity=0.515  Sum_probs=34.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN   48 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~   48 (115)
                      .++||+|+|.|+.-+.+|..|++.|.+|+.+|+++.-++...++.
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~   47 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN   47 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence            459999999999999999999999999999999998776666654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.75  E-value=6.1e-05  Score=53.01  Aligned_cols=37  Identities=30%  Similarity=0.505  Sum_probs=32.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~   40 (115)
                      ++.+|+|||||.+|+.+|..|.+..  .+++++|+++..
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h   40 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH   40 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence            4578999999999999999999975  899999998763

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.75  E-value=4.3e-05  Score=52.86  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~   40 (115)
                      +|+|||||++|+.+|..+.+   .+++|+|+|+++..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            58999999999999999864   36899999987753

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.74  E-value=7.8e-05  Score=53.18  Aligned_cols=36  Identities=36%  Similarity=0.558  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||||++|+.+|..|++.|.+|+++|+.+..
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            468999999999999999999999999999988765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.72  E-value=6.7e-05  Score=53.41  Aligned_cols=37  Identities=35%  Similarity=0.499  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      .++||++||||+.|.+++..|++.  ..+|.|+||.+.+
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~   40 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV   40 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence            468999999999999999999994  5899999998765

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.71  E-value=6.8e-05  Score=50.61  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=34.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      |+....+|.|||+|..|...|..+++.|++|+++|.++..
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            4444457999999999999999999999999999987653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.71  E-value=5.5e-05  Score=47.74  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||+|..|...|..++..|++|.++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            589999999999999999999999999998654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR02053 MerA mercuric reductase

Probab=97.70  E-value=0.0001  Score=52.75  Aligned_cols=36  Identities=36%  Similarity=0.623  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            468999999999999999999999999999988665

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.70  E-value=0.0001  Score=52.71  Aligned_cols=36  Identities=31%  Similarity=0.473  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+..
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            468999999999999999999999999999987765

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=3.8e-05  Score=55.61  Aligned_cols=35  Identities=46%  Similarity=0.677  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+||+|||||-+|+.+|+..++.|.+++++-.+..
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d   38 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD   38 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence            48999999999999999999999999998875543

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.69  E-value=9.1e-05  Score=52.56  Aligned_cols=36  Identities=39%  Similarity=0.593  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|++|+.+|..+.+.|.+|+++++.+..
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  184 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI  184 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence            368999999999999999999999999999987654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.68  E-value=9.8e-05  Score=52.87  Aligned_cols=58  Identities=28%  Similarity=0.355  Sum_probs=42.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+|+|+.+...+.. .-.+.....+.|++.|+.
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-d~~~~~~l~~~l~~~gV~  229 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-DAEVSKEIAKQYKKLGVK  229 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-CHHHHHHHHHHHHHCCCE
Confidence            4689999999999999999999999999999876643221 111223345566666654

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.68  E-value=1.9e-05  Score=53.20  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC------CceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG------IKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g------~~v~viE~~~~~   40 (115)
                      .++|+|||||+.|.++|++|++.+      +.++|+|...-.
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA   51 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIA   51 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccc
Confidence            578999999999999999999987      899999976643

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.67  E-value=0.0001  Score=44.84  Aligned_cols=31  Identities=32%  Similarity=0.459  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            8 VVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+|+|+|..|+..|..|++.|++|.++.+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998765

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06370 mercuric reductase; Validated

Probab=97.67  E-value=0.0001  Score=52.68  Aligned_cols=37  Identities=35%  Similarity=0.562  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+...
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  207 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL  207 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence            4689999999999999999999999999999887653

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.64  E-value=6.6e-05  Score=53.31  Aligned_cols=39  Identities=41%  Similarity=0.566  Sum_probs=35.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++|++|||+|.-||++|.+|++.|.+|.++|+....++
T Consensus        13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG   51 (561)
T KOG4254|consen   13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG   51 (561)
T ss_pred             cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence            479999999999999999999999999999999855443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.64  E-value=0.00011  Score=49.97  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|+|+|+|..|...|..|++.|.+|+++.+..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            3579999999999999999999999999999853

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.64  E-value=0.00012  Score=52.28  Aligned_cols=36  Identities=31%  Similarity=0.551  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+++|||+|+.|+.+|..+++.|.+|+++|+.+.+
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            468999999999999999999999999999988765

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.63  E-value=8.4e-05  Score=56.49  Aligned_cols=35  Identities=37%  Similarity=0.723  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|||||+.|+.+|..|++.|.+|+|+|+.+..
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l  175 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL  175 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence            57999999999999999999999999999987654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.59  E-value=0.00014  Score=55.68  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~   40 (115)
                      +.+|+|||+|++|+.+|..|.+.    +++|+|+++.+.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            45899999999999999999764    4899999988775

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.59  E-value=0.00013  Score=51.93  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=40.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+..... ..-.+.....+.|++.|+.
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~  205 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIP  205 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCE
Confidence            357999999999999999999999999999987654221 1111222344556666653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.58  E-value=0.00014  Score=52.33  Aligned_cols=34  Identities=38%  Similarity=0.586  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|+|+|+|.+|+.+|..|+++|++|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3579999999999999999999999999999654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.58  E-value=0.00013  Score=52.14  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +|.|||.|++|+++|..|.++|+.|+++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999987553

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.57  E-value=9.1e-05  Score=46.98  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|+|.|..|+.+|..|++.|++|..+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            799999999999999999999999999997764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.57  E-value=0.00012  Score=56.05  Aligned_cols=58  Identities=28%  Similarity=0.359  Sum_probs=41.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+.+........-.......+.|+..|+.
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~  203 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVR  203 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCE
Confidence            5799999999999999999999999999998765422111111122344566666654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.56  E-value=0.00021  Score=51.37  Aligned_cols=58  Identities=29%  Similarity=0.417  Sum_probs=41.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++.+..... ....+.....+.|+..|+.
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~  240 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLD  240 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcE
Confidence            468999999999999999999999999999987764321 1111222334455555643

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.56  E-value=0.00023  Score=51.15  Aligned_cols=36  Identities=33%  Similarity=0.532  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+++|||+|+.|+.+|..+++.|.+|+|+|+.+..
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i  209 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV  209 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            468999999999999999999999999999988765

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.55  E-value=0.00021  Score=50.99  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|+.|+.+|..+++.|.+|+++++.+..
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  201 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI  201 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            467999999999999999999999999999987664

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.55  E-value=0.00016  Score=50.14  Aligned_cols=32  Identities=44%  Similarity=0.499  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339           15 IAGLATALALKRLGIKPLVLEKSDGLRGTGAA   46 (115)
Q Consensus        15 ~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~   46 (115)
                      ++||++|+.|+++|++|+|+|+++.+++...+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t   32 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRT   32 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-E
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEE
Confidence            58999999999999999999999988765443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.53  E-value=0.00021  Score=49.13  Aligned_cols=37  Identities=35%  Similarity=0.588  Sum_probs=32.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++|||+|++||+++..+-..|-.|+++|+....++.
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN   47 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN   47 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence            5999999999999999988887779999998876553

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.53  E-value=0.00021  Score=51.26  Aligned_cols=58  Identities=19%  Similarity=0.305  Sum_probs=41.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|..|+.+|..|++.|.+|+++++.+...... ...+.....+.|+..|+.
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~-d~~~~~~l~~~L~~~gV~  234 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE-DADAAEVLEEVFARRGMT  234 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-CHHHHHHHHHHHHHCCcE
Confidence            4579999999999999999999999999999876643221 111223344566666654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.53  E-value=0.00025  Score=50.47  Aligned_cols=58  Identities=24%  Similarity=0.274  Sum_probs=40.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++.+...... .-.+.....+.|++.|+.
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-~~~~~~~l~~~l~~~gV~  215 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-DRDIADNIATILRDQGVD  215 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc-CHHHHHHHHHHHHhCCCE
Confidence            4689999999999999999999999999999876543211 111222234456665653

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.53  E-value=0.00021  Score=50.86  Aligned_cols=38  Identities=42%  Similarity=0.700  Sum_probs=33.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |.....+++|+|+|..|+.+|..|++.|++|+++|+..
T Consensus         1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            43345789999999999999999999999999999864

>PRK07846 mycothione reductase; Reviewed

Probab=97.52  E-value=0.0002  Score=51.25  Aligned_cols=36  Identities=28%  Similarity=0.501  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++.+..
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l  201 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL  201 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            578999999999999999999999999999987764

>PLN02507 glutathione reductase

Probab=97.52  E-value=0.00019  Score=51.95  Aligned_cols=58  Identities=14%  Similarity=0.146  Sum_probs=40.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+-+|..+++.|.+|+|+++.+.+... ..-.+.....+.|++.|+.
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~GI~  260 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRAVVARNLEGRGIN  260 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHhCCCE
Confidence            468999999999999999999999999999987654221 1111222233456666654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.52  E-value=0.00016  Score=49.23  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..|+++|++|+++++++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            3699999999999999999999999999998753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.50  E-value=0.00021  Score=49.12  Aligned_cols=33  Identities=18%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..|+++|++|+++++.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            579999999999999999999999999999754

>PRK06116 glutathione reductase; Validated

Probab=97.49  E-value=0.00027  Score=50.40  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=40.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. ...-.+.....+.|+..|+.
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~  224 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIR  224 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcE
Confidence            46899999999999999999999999999998765421 11111222344556666643

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.00014  Score=52.23  Aligned_cols=36  Identities=44%  Similarity=0.593  Sum_probs=31.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +..+||+|||||-+|+.+|...++-|.+.+++-.+-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            457899999999999999999999999998886543

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.48  E-value=6.7e-05  Score=52.84  Aligned_cols=73  Identities=25%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC-------------CceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG-------------IKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDP   72 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g-------------~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~   72 (115)
                      .+|+|||||++|..+|-.|+..-             ++|.|+|+.+...+ ...-.++....+.|+++|++-.+...-..
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~  234 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKLGVEVLLGTPVTE  234 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHCCCEEEcCCceEE
Confidence            47999999999999999887632             38999999888642 22333555678899999987555544333


Q ss_pred             cceEEEE
Q 047339           73 VKRLFVT   79 (115)
Q Consensus        73 ~~~~~~~   79 (115)
                      ++...+.
T Consensus       235 v~~~~v~  241 (405)
T COG1252         235 VTPDGVT  241 (405)
T ss_pred             ECCCcEE
Confidence            4333333

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.47  E-value=0.0003  Score=50.25  Aligned_cols=37  Identities=41%  Similarity=0.737  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+.+++|||+|+.|+.+|..|++.|.+|+++++.+..
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            3468999999999999999999999999999988765

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.46  E-value=0.00013  Score=50.37  Aligned_cols=36  Identities=33%  Similarity=0.436  Sum_probs=27.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~   40 (115)
                      .+|+++||.||++|++|..|...+ .++..+|+.+..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            479999999999999999999987 899999987754

>PTZ00058 glutathione reductase; Provisional

Probab=97.45  E-value=0.00027  Score=51.94  Aligned_cols=58  Identities=14%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|..|+.+|..+++.|.+|+++|+.+..... ..-.+.....+.|+..|+.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~~i~~~l~~~L~~~GV~  294 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDETIINELENDMKKNNIN  294 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCHHHHHHHHHHHHHCCCE
Confidence            468999999999999999999999999999987654321 1111223344556666654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.44  E-value=0.00025  Score=47.78  Aligned_cols=33  Identities=30%  Similarity=0.459  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..++++|++|.++|.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            479999999999999999999999999999764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.43  E-value=0.00033  Score=50.60  Aligned_cols=59  Identities=17%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+.+++|||||+.|+.+|..+..   .|.+|+|+|+.+.+.. ...-.+.....+.|++.|+.
T Consensus       186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-~~d~~~~~~l~~~L~~~GI~  247 (486)
T TIGR01423       186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-GFDSTLRKELTKQLRANGIN  247 (486)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-ccCHHHHHHHHHHHHHcCCE
Confidence            34689999999999999976654   4899999998876532 11222333455566666654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.43  E-value=0.00032  Score=50.82  Aligned_cols=57  Identities=26%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++....  ......+.....+.|+..|+.
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--~~~d~~~~~~l~~~l~~~GV~  238 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL--RGFDRQCSEKVVEYMKEQGTL  238 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc--ccCCHHHHHHHHHHHHHcCCE
Confidence            458999999999999999999999999999864221  111111223345566666654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.43  E-value=0.00028  Score=47.63  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|+|||+|..|..+|..|++.|++|+++++.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999998743

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.42  E-value=0.00029  Score=47.59  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +|+|+|+|..|+.+|..|++.|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999987

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.41  E-value=0.00035  Score=47.96  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..++..|++|+++|..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5699999999999999999999999999997653

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.41  E-value=0.00033  Score=50.05  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC---CceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG---IKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~~~   40 (115)
                      ++|+|||+|++|+.+|..|.+.-   ..+.|+|..+..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            68999999999999999998842   239999987765

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.40  E-value=0.00038  Score=50.28  Aligned_cols=57  Identities=23%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||||+.|+.+|..|++.|.+|+|+++. ... ....-.+.....+.|+..|+.
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~L~~~gV~  236 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDCANKVGEHMEEHGVK  236 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-cccCHHHHHHHHHHHHHcCCE
Confidence            457999999999999999999999999999874 221 111111223344566666654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.40  E-value=0.00039  Score=50.86  Aligned_cols=34  Identities=32%  Similarity=0.533  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.+++|||+|+.|+-+|..|++.|.+|+|+++..
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            4689999999999999999999999999999753

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.40  E-value=0.00034  Score=49.60  Aligned_cols=56  Identities=27%  Similarity=0.313  Sum_probs=40.7

Q ss_pred             cEEEECCCHHHHHHHHHHHH--------------CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            7 DVVIIGAGIAGLATALALKR--------------LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~--------------~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +++|||||++|+.+|..|+.              .+.+|+++++.+.+.. ...-.+.....+.|++.|+.
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~~~~~~~~L~~~gV~  244 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQALRKYGQRRLRRLGVD  244 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHHHHHHHHHHHHCCCE
Confidence            79999999999999998875              4789999998766532 11222334456677777765

>TIGR03452 mycothione_red mycothione reductase

Probab=97.38  E-value=0.00041  Score=49.62  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l  204 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            468999999999999999999999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.38  E-value=0.00037  Score=47.04  Aligned_cols=34  Identities=32%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..|+++|++|.++|+++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999997643

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.37  E-value=0.00032  Score=47.29  Aligned_cols=34  Identities=21%  Similarity=0.469  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            4699999999999999999999999999997654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.37  E-value=0.00042  Score=47.15  Aligned_cols=37  Identities=27%  Similarity=0.566  Sum_probs=32.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+.+ .+|.|||+|..|...|..|++.|++|++++.++
T Consensus         1 ~~~~-~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          1 MNPI-QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             CCCc-cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            5444 569999999999999999999999999999754

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.34  E-value=0.00043  Score=47.47  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=32.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+.+ ++|.|||+|..|...|..|++.|++|+++++++
T Consensus         1 ~~~~-m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          1 MHHG-MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCCC-CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4443 479999999999999999999999999999864

>PRK14694 putative mercuric reductase; Provisional

Probab=97.33  E-value=0.00053  Score=49.23  Aligned_cols=57  Identities=26%  Similarity=0.336  Sum_probs=39.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++......  ..-.+.....+.|++.|+.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--~~~~~~~~l~~~l~~~GI~  234 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--EDPAVGEAIEAAFRREGIE  234 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--CCHHHHHHHHHHHHhCCCE
Confidence            46899999999999999999999999999986432211  1111223344556666653

>PLN02546 glutathione reductase

Probab=97.32  E-value=0.00051  Score=50.50  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=40.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|..|+-+|..|+..|.+|+|+++.+.... ...-.+.....+.|+..|+.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-~~d~~~~~~l~~~L~~~GV~  309 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-GFDEEVRDFVAEQMSLRGIE  309 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-ccCHHHHHHHHHHHHHCCcE
Confidence            46899999999999999999999999999998765422 11111112233556666654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.32  E-value=0.00056  Score=46.58  Aligned_cols=37  Identities=30%  Similarity=0.329  Sum_probs=33.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +..++|.|||+|..|..+|..|+++|++|.+++++..
T Consensus         2 ~~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4456899999999999999999999999999998754

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.32  E-value=0.0004  Score=49.28  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||.|..|+.+|..|+++|++|..+|.++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999999999999997654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.31  E-value=0.0004  Score=46.87  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..+++.|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999997654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.27  E-value=0.00058  Score=46.18  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=32.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+.+ .+|.|||+|..|...|..++..|++|.++|+++.
T Consensus         1 ~~~~-~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          1 MAEI-KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CCCc-CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4444 4699999999999999999999999999997653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.27  E-value=0.00046  Score=47.28  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||+|..|..+|..|++.|++|.++.+++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999999999999999854

>PRK14727 putative mercuric reductase; Provisional

Probab=97.26  E-value=0.00067  Score=48.86  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++.
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            468999999999999999999999999999874

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.23  E-value=0.0005  Score=52.39  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHC---CCceEEEcCCCCC
Q 047339            8 VVIIGAGIAGLATALALKRL---GIKPLVLEKSDGL   40 (115)
Q Consensus         8 v~IvG~G~~Gl~~A~~l~~~---g~~v~viE~~~~~   40 (115)
                      |+|||+|++|+.+|..|.+.   +++|+|+|+.+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            68999999999999988774   4799999988775

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.23  E-value=0.00074  Score=50.54  Aligned_cols=37  Identities=30%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +.+++|||||..|+.+|..+++.|.+|+++|+.+.+.
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll  348 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL  348 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence            4689999999999999999999999999999887653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.22  E-value=0.00056  Score=47.93  Aligned_cols=33  Identities=27%  Similarity=0.571  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|+|.|.+||+.|..|++.|++|+.+|..+.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            799999999999999999999999999997654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.22  E-value=0.001  Score=47.55  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|+|||+|..|+-+|..|.+.|.+|+++++...
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            5899999999999999999999999999987653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.21  E-value=0.00081  Score=46.70  Aligned_cols=43  Identities=33%  Similarity=0.397  Sum_probs=36.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA   46 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~   46 (115)
                      ..+|.+|||||..|+..|..++..|.++.|+|..-..++++-+
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn   61 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN   61 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence            3689999999999999999999999999999987555554443

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.21  E-value=0.0006  Score=43.21  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=28.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|+|||+|.++..+|..|++.|.+|+++-|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            4689999999999999999999999999998765

...

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.20  E-value=0.00064  Score=45.68  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..++++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            3699999999999999999999999999996543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.19  E-value=0.001  Score=42.84  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+++|||||.+|+.-+..|.+.|.+|+|++...
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999997643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.18  E-value=0.00098  Score=41.21  Aligned_cols=31  Identities=39%  Similarity=0.410  Sum_probs=28.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      ..+|+|||||..|+.-+..|.+.|++|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4689999999999999999999999999995

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.12  E-value=0.0014  Score=44.95  Aligned_cols=39  Identities=28%  Similarity=0.502  Sum_probs=33.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~   39 (115)
                      |.....+|+|||+|-+|.++|+.|...++  .+.|+|.+..
T Consensus         2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            34456799999999999999999999997  7999997554

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=97.11  E-value=0.00077  Score=45.65  Aligned_cols=36  Identities=33%  Similarity=0.436  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-------CceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-------IKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-------~~v~viE~~~~~   40 (115)
                      .++|+|||+|..||++|+.+.+..       ++|+|++-...+
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e   45 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE   45 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence            469999999999999998888843       679999866554

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.11  E-value=0.00095  Score=48.07  Aligned_cols=38  Identities=42%  Similarity=0.510  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~~~   42 (115)
                      +.+.=|||+|+++|++|.+|-+.    |-+|+|+|+.+.+++
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG   43 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG   43 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence            35677999999999999999995    569999998876543

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.10  E-value=0.00079  Score=50.14  Aligned_cols=35  Identities=43%  Similarity=0.594  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceE-EEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPL-VLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~-viE~~~~   39 (115)
                      ..|++|||||.+|+.+|+.|+++|.+.. ++|+...
T Consensus        39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~l   74 (856)
T KOG2844|consen   39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRL   74 (856)
T ss_pred             cccEEEEcCCchhHHHHHHHHHccccceEEEeeeee
Confidence            4799999999999999999999999854 4455443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.10  E-value=0.0011  Score=45.28  Aligned_cols=33  Identities=33%  Similarity=0.496  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~   39 (115)
                      +|.|||+|.+|+++|+.|+..|  ..+.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            6999999999999999999999  47999998654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.09  E-value=0.0013  Score=42.25  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..+++|||||-.|...+..|.+.|.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            468999999999999999999999999999754

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.07  E-value=0.0014  Score=44.66  Aligned_cols=34  Identities=32%  Similarity=0.598  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ++|.|||+|..|+..|..++..|+ +|.++|..+.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            479999999999999999999886 8999997544

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.07  E-value=0.001  Score=48.37  Aligned_cols=35  Identities=40%  Similarity=0.565  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|||||+.|+.+|..|+..+.+|+++++.+..
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l  387 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL  387 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence            58999999999999999999999999999976554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.05  E-value=0.0017  Score=47.70  Aligned_cols=59  Identities=19%  Similarity=0.155  Sum_probs=41.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC----cc-eeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG----TG-AAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~----~~-~~~~~~~~~~~~l~~~g~~   63 (115)
                      +-+++|+|+|..|..+|..|.++|++++++|+++....    .+ ..+.-.+...+.|++.|+.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~  480 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLD  480 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCcc
Confidence            46899999999999999999999999999998765311    11 1222233344566666654

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.04  E-value=0.0012  Score=45.06  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|.|||+|..|...|..|++.|++|.++++++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            379999999999999999999999999999864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.04  E-value=0.00093  Score=47.29  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||.|..|+.+|..|++.|++|.++++++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999997654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.04  E-value=0.001  Score=48.86  Aligned_cols=34  Identities=32%  Similarity=0.455  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+++|||||+.|+.+|..|++.|.+|+++++.+.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            5799999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.03  E-value=0.0016  Score=40.56  Aligned_cols=35  Identities=31%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.+|+|+|+|.+|.-++..|...|++|+++|....
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~   54 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE   54 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence            57899999999999999999999999999997653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.03  E-value=0.0007  Score=38.84  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ...+++|||||..|..-+..|.+.|.+|+|+...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            3568999999999999999999999999999766

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.02  E-value=0.0012  Score=44.93  Aligned_cols=38  Identities=32%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             CCCcc-ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            1 METVE-KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         1 m~~~~-~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      |+.+. .+|.|||+|..|..+|..|.+.|+  +|.++++++
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            55544 579999999999999999999985  788998764

>PRK10262 thioredoxin reductase; Provisional

Probab=97.01  E-value=0.0013  Score=44.89  Aligned_cols=36  Identities=25%  Similarity=0.516  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|..|+.+|..|++.+.+|+++++.+..
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            358999999999999999999999999999987643

>PRK12831 putative oxidoreductase; Provisional

Probab=97.01  E-value=0.0013  Score=47.33  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|+|||||.+|+.+|..|.+.|.+|+++++...
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            6899999999999999999999999999987543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.01  E-value=0.0018  Score=41.56  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      +.+|+|||+|-.|...|..|++.|+ +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            5689999999999999999999999 59999876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.00  E-value=0.0015  Score=47.46  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +-.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            345799999999999999999999999999997643

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.97  E-value=0.0016  Score=45.05  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIK-PLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~   38 (115)
                      .+++|||+|+.|+.+|..|.+.|.+ |+|+++..
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            5799999999999999999999987 99998754

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.96  E-value=0.0013  Score=44.90  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|+|+|..|+..|+.|++.|.+|+++-|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            79999999999999999999998888887665

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.96  E-value=0.0023  Score=45.67  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+....+++|+|.|.+|+.+|..|+++|++|++.|..+.
T Consensus         1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            444456899999999999999999999999999996554

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.93  E-value=0.0021  Score=45.81  Aligned_cols=38  Identities=29%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |......++|+|+|.+|+++|..|++.|++|.+.|+..
T Consensus         1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            44344678999999999999999999999999998654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.90  E-value=0.0022  Score=38.40  Aligned_cols=34  Identities=38%  Similarity=0.505  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +.+|+|+|+|..|..+|..|++.|+ +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999998 688998644

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.90  E-value=0.0015  Score=43.96  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||.|..|..+|..|.++|++|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999764

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.89  E-value=0.0023  Score=43.49  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ++|+|||+|..|..+|..++..|+ ++.++|.++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            589999999999999999999876 8999998554

>PRK04148 hypothetical protein; Provisional

Probab=96.89  E-value=0.0011  Score=39.89  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++++||.| .|..+|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            569999999 899899999999999999997765

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.88  E-value=0.0021  Score=37.26  Aligned_cols=56  Identities=29%  Similarity=0.282  Sum_probs=38.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC----Cc-ceeeeeCccHHHHHHHcCCh
Q 047339            8 VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR----GT-GAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~----~~-~~~~~~~~~~~~~l~~~g~~   63 (115)
                      |+|+|.|..|..++..|.+.+.+|+++|+++...    .. -..+.-.+...+.|++.++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~   61 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIE   61 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGG
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCcc
Confidence            6899999999999999999888999999876421    11 12223333345667766654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.88  E-value=0.002  Score=45.11  Aligned_cols=34  Identities=32%  Similarity=0.460  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+++|+|+|.+|+.++..|.+.|.+|.+++++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4679999999999999999999999999999764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.86  E-value=0.002  Score=46.96  Aligned_cols=35  Identities=34%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+|+|||||.+|+.+|..|+..+.+|+|+++.+..
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            58999999999999999999999999999987654

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.86  E-value=0.0032  Score=38.19  Aligned_cols=32  Identities=34%  Similarity=0.584  Sum_probs=28.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +|.|||+ |..|..+|+.|...++  ++.++|.++
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            7999999 9999999999999885  588888764

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.83  E-value=0.0028  Score=43.87  Aligned_cols=34  Identities=47%  Similarity=0.632  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999998 788898764

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.83  E-value=0.0024  Score=45.35  Aligned_cols=35  Identities=29%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -..|+|+|+|+.|+.+|..++..|.+|+++|.++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            35799999999999999999999999999987653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.82  E-value=0.0042  Score=37.32  Aligned_cols=35  Identities=40%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~   38 (115)
                      ...+++|+|+|-+|-.++..|...|.+ ++|+.|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            357899999999999999999999987 99998764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.82  E-value=0.0023  Score=46.58  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|.-.|..++++|++|+++|+++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5699999999999999999999999999998754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.81  E-value=0.002  Score=46.92  Aligned_cols=35  Identities=34%  Similarity=0.460  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56899999999999999999999999999987653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.79  E-value=0.0033  Score=38.93  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.+||-|..|...|..|.++|++|.++++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            5799999999999999999999999999998753

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.78  E-value=0.0034  Score=43.16  Aligned_cols=34  Identities=15%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .+|+|||+|..|...|+.++..|+ ++.|+|.++.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            589999999999999999999996 8999997665

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.78  E-value=0.0038  Score=46.38  Aligned_cols=59  Identities=22%  Similarity=0.187  Sum_probs=42.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC----cce-eeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG----TGA-AINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~----~~~-~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|+|.|..|..+|..|.++|++++++|.++..-.    .+. .+.-.+...+.|++.|+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~  463 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAE  463 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCc
Confidence            46899999999999999999999999999998765311    111 122223345677777764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.78  E-value=0.0026  Score=42.55  Aligned_cols=36  Identities=28%  Similarity=0.529  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|++|+-+|..|++.+.+|+++++.+..
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            358999999999999999999999999999986543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.78  E-value=0.0028  Score=42.84  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|||.|..|...|..|++.|++|.++++++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999998764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.77  E-value=0.0028  Score=46.17  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|.-.|..++++|++|+++|+++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5699999999999999999999999999998765

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.75  E-value=0.0027  Score=45.90  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~   39 (115)
                      ++|+|||.|..|+.+|..|++.|  ++|+.+|.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            47999999999999999999985  77999997654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.74  E-value=0.0033  Score=44.27  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG-IKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~   38 (115)
                      .+|+|+|+|-.|..+|..|++++ .+|++-+|+.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            68999999999999999999999 8999999874

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.73  E-value=0.0034  Score=40.76  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=29.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIG-AGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.||| +|..|..+|..|.+.|++|.++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            699997 79999999999999999999998765

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.72  E-value=0.0039  Score=43.20  Aligned_cols=34  Identities=44%  Similarity=0.635  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            5689999999999999999999998 899999753

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.72  E-value=0.0037  Score=42.66  Aligned_cols=33  Identities=33%  Similarity=0.488  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~   39 (115)
                      +|+|||+|.+|.++|+.|+..|  ..+.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            6999999999999999999999  47999998654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.71  E-value=0.0027  Score=44.74  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||.|..|+.+|..++. |++|+++|.++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            69999999999999988875 999999998764

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.70  E-value=0.0025  Score=48.25  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|.-.|..++..|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.68  E-value=0.0031  Score=44.94  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|+|+|+|..|..+|..|.+.|++|.++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            799999999999999999999999999998654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.67  E-value=0.0037  Score=44.83  Aligned_cols=34  Identities=32%  Similarity=0.493  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|.+|+.+|..|.+.|. +|+++++..
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3689999999999999999999998 899998754

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.64  E-value=0.0048  Score=38.61  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=30.0

Q ss_pred             ccccEEEECCCH-HHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGI-AGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..++++|||+|- +|..+|.+|.+.|.+|.++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            357899999996 6999999999999999999876

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.61  E-value=0.006  Score=38.33  Aligned_cols=32  Identities=31%  Similarity=0.327  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIK-PLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~   38 (115)
                      +|+|||+|-.|...|..|++.|+. ++++|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999985 99998654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.61  E-value=0.0032  Score=47.69  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|.-.|..++.+|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4689999999999999999999999999997764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.60  E-value=0.0042  Score=47.27  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~   39 (115)
                      .+|+|||||.+|+.+|..+.+.|.+ |+++++...
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            5899999999999999999999997 999987643

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.60  E-value=0.0055  Score=42.12  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~   39 (115)
                      ..+|+|||+|..|..+|+.++..| .++.|+|.++.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            468999999999999999999998 58889997653

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0055  Score=42.84  Aligned_cols=42  Identities=31%  Similarity=0.370  Sum_probs=37.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA   46 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~   46 (115)
                      .+||+|+|-|+.=+.++..|+..|.+|+.+|+++.-+....+
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~as   47 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSAS   47 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccc
Confidence            699999999999999999999999999999999876554443

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.59  E-value=0.0061  Score=39.18  Aligned_cols=33  Identities=33%  Similarity=0.537  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      +.+|+|||+|-.|..+|..|++.|+ +++++|..
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            5689999999999999999999997 78898865

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.55  E-value=0.0064  Score=40.83  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ..+|+|+|+|-.|..+|..|++.|+ +++|+|....
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            5689999999999999999999994 7889986543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.54  E-value=0.004  Score=42.02  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||.|..|..+|..|.+.|++|.++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            488999999999999999999999999998753

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.53  E-value=0.0066  Score=41.63  Aligned_cols=34  Identities=21%  Similarity=0.538  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +.+|.|||+|.+|.++|+.|...+.  .+.|+|.+.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4689999999999999999999885  588998755

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.52  E-value=0.0053  Score=44.11  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|+|.|.+|+.+|..|.+.|++|++.|.++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            479999999999999999999999999999764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.49  E-value=0.0051  Score=44.57  Aligned_cols=32  Identities=38%  Similarity=0.664  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .+++|+|.|.+|++++.+|.+.|.+|++.|..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999999954

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.49  E-value=0.0083  Score=38.90  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIK-PLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~   37 (115)
                      ..+|+|||+|-.|...|..|++.|+. ++++|..
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999985 8888865

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.49  E-value=0.0081  Score=36.28  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +|+|||+|-.|...|..|.+.|+ +++++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            48999999999999999999998 688998654

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.47  E-value=0.0054  Score=41.71  Aligned_cols=32  Identities=31%  Similarity=0.457  Sum_probs=28.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            8 VVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         8 v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      |.|||+|..|..+|..++..++ +|.++|.++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            5799999999999999999887 9999998753

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.47  E-value=0.0056  Score=43.65  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.+++|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46799999999999999999999999999997754

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.46  E-value=0.0046  Score=46.99  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|.-.|..++..|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4699999999999999999999999999997764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.46  E-value=0.0055  Score=45.76  Aligned_cols=59  Identities=22%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC----Ccce-eeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR----GTGA-AINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~----~~~~-~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|+|+|..|...|..|.++|++++++|+++..-    ..+. .+.-.+...+.|++.|+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~  463 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAA  463 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCC
Confidence            4689999999999999999999999999999887531    1111 122223344567766654

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.45  E-value=0.006  Score=40.58  Aligned_cols=33  Identities=27%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC---CceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG---IKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..|.+.|   .+|.++++++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~   38 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP   38 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence            57999999999999999999988   7888998864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.43  E-value=0.008  Score=38.60  Aligned_cols=33  Identities=30%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|+|.|-.|..+|..|.+.|++|+++|.+.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999998754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.41  E-value=0.0067  Score=43.04  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -..|+|+|.|+.|..+|..++..|.+|.++|.++
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            4579999999999999999999999999998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.41  E-value=0.0044  Score=37.44  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=27.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            8 VVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|+|+|+.+..++..++..|++|+++|-.+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            57999999999999999999999999996654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.40  E-value=0.0072  Score=41.11  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+++|+|.|.+|..++..|++.|.+|+++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56899999999999999999999999999998753

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.39  E-value=0.0084  Score=39.77  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=32.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+.+++|+|+|+.+..+|..++..|++|+|+|-.+.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            457899999999999999999999999999985544

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK08017 oxidoreductase; Provisional

Probab=96.38  E-value=0.0077  Score=39.41  Aligned_cols=33  Identities=39%  Similarity=0.512  Sum_probs=29.5

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..++|.|+ |..|..+|..|.++|++|.++.++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46999998 9999999999999999999988754

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.37  E-value=0.0066  Score=42.17  Aligned_cols=33  Identities=36%  Similarity=0.528  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .++|+|+||.||.++..++..|. +|.++|.++.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            59999999999999988888985 6666677654

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.36  E-value=0.0089  Score=40.92  Aligned_cols=32  Identities=28%  Similarity=0.479  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +|.|||+|..|.++|+.|...++  ++.|+|.+.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   34 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            58999999999999999998886  688999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.34  E-value=0.0061  Score=43.74  Aligned_cols=36  Identities=33%  Similarity=0.471  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++|+|+|-|-+|+++|.+|.+.|++|++.|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            468999999999999999999999999999966655

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.33  E-value=0.0099  Score=39.38  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=28.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      +.+|+|||+|..|+.+|..|++.|+ +++|+|..
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            5689999999999999999999997 67777743

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.33  E-value=0.01  Score=39.22  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|+|+|-.|..+|..|++.|+ +++++|...
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            4689999999999999999999996 677777544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.31  E-value=0.002  Score=45.34  Aligned_cols=59  Identities=29%  Similarity=0.379  Sum_probs=47.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+.+.+|||+|..||.++.-..+.|.+|+++|-.+...+. .--.++...+++|+.-|+.
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgik  268 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIK  268 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhcCce
Confidence            4678999999999999999999999999999987776433 3334556677888877754

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.31  E-value=0.0057  Score=46.34  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHH-HCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALK-RLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~-~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..++ ..|++|+++|.++.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~  344 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ  344 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46999999999999999988 88999999997654

>PLN02602 lactate dehydrogenase

Probab=96.30  E-value=0.012  Score=41.11  Aligned_cols=34  Identities=18%  Similarity=0.362  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~   39 (115)
                      .+|+|||+|-+|.++|+.|...+.  .+.|+|.++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~   73 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD   73 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            599999999999999999998886  5889987553

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.30  E-value=0.0094  Score=40.32  Aligned_cols=34  Identities=38%  Similarity=0.495  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+++|+|+|-+|.+++..|.+.|+ +++|++|+.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            3579999999999999999999997 799998864

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.27  E-value=0.0081  Score=40.79  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||.|..|..+|..|.+.|++|.++++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~   35 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ   35 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            799999999999999999999999999998653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.26  E-value=0.0084  Score=40.65  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+++|+|.|..|..+|..|+..|.+|.+++++..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46799999999999999999999999999998753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=96.26  E-value=0.011  Score=39.21  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCC-----------CceEEEcCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLG-----------IKPLVLEKSD   38 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g-----------~~v~viE~~~   38 (115)
                      +.+.+|+|||+|-.|+.++..|++.|           .+++|+|...
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            35689999999999999999999964           3788888543

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.25  E-value=0.0078  Score=40.90  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||.|..|..+|..|.+.|++|.++++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.24  E-value=0.0032  Score=42.21  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      +.+|||||++|.+.|..|++.  ..+++++-.++..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            468999999999999999884  5788888766543

>PLN02240 UDP-glucose 4-epimerase

Probab=96.24  E-value=0.013  Score=40.18  Aligned_cols=36  Identities=28%  Similarity=0.498  Sum_probs=31.7

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcC
Q 047339            1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      |+.+...|+|.|| |..|..++..|.++|++|+++++
T Consensus         1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~   37 (352)
T PLN02240          1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDN   37 (352)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            5566678999987 99999999999999999999875

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=96.23  E-value=0.0093  Score=41.44  Aligned_cols=30  Identities=20%  Similarity=0.139  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--------CceEEEcC
Q 047339            7 DVVIIGAGIAGLATALALKRLG--------IKPLVLEK   36 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g--------~~v~viE~   36 (115)
                      +|.|||+|.-|.++|..|+++|        ++|.++.+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~   38 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF   38 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence            5899999999999999999999        99999976

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.23  E-value=0.0067  Score=39.88  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ...|.|||+|..|.-.|...+..|++|.+++++...
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            468999999999999999999999999999988753

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.22  E-value=0.0091  Score=41.93  Aligned_cols=33  Identities=36%  Similarity=0.474  Sum_probs=30.5

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIG-AGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|+||| .|..|..+|..|.++|++|.++++.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            6799999 89999999999999999999999764

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.22  E-value=0.0075  Score=45.63  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHH-HCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALK-RLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~-~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46999999999999999888 58999999997754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08328 hypothetical protein; Provisional

Probab=96.21  E-value=0.013  Score=38.41  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +.+|+|||+|-.|+.+|..|++.|+ +++|+|...
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999997 577887543

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.011  Score=42.99  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|+|.|-+|+++|.+|.+.|++|.+.|...
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            469999999999999999999999999999654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.20  E-value=0.0084  Score=43.74  Aligned_cols=34  Identities=35%  Similarity=0.500  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+++|+|+|+.|+.++..+...|..|.++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.20  E-value=0.013  Score=38.27  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=28.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4689999999999999999999997 67777643

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.20  E-value=0.011  Score=42.30  Aligned_cols=35  Identities=34%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...++|+|.|..|..+|..|+..|.+|.++|.++.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            35799999999999999999999999999997653

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.19  E-value=0.0094  Score=43.01  Aligned_cols=34  Identities=21%  Similarity=0.108  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|+|+|.|-+|..+|.+|.+.|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            3579999999999999999999999999999643

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.17  E-value=0.015  Score=37.60  Aligned_cols=39  Identities=28%  Similarity=0.342  Sum_probs=32.2

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+.+...++|.|+ |..|..++..|.++|++|.++.+++.
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            5444467999996 78899999999999999999988754

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=96.16  E-value=0.01  Score=41.49  Aligned_cols=48  Identities=23%  Similarity=0.340  Sum_probs=35.3

Q ss_pred             HHHHHHHHCCCceEEEcCCCCCCCcceee-----------------eeCccHHHHHHHcCChHHH
Q 047339           19 ATALALKRLGIKPLVLEKSDGLRGTGAAI-----------------NFAPNAWLALDALGVSHKL   66 (115)
Q Consensus        19 ~~A~~l~~~g~~v~viE~~~~~~~~~~~~-----------------~~~~~~~~~l~~~g~~~~i   66 (115)
                      ++|+.|+++|++|+|+|+.+.+++...+.                 ...++..++++++|+....
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~   65 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRL   65 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhh
Confidence            47899999999999999999876543221                 1235567888888887553

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.15  E-value=0.011  Score=42.49  Aligned_cols=32  Identities=16%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..+|+|+|.|.+|..+|.+|.+ |.+|++.|.+
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            3579999999999999999995 9999999954

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.15  E-value=0.012  Score=38.57  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      ...|+|||||.+++-=+..|.+.|.+|+|+..
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap   56 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK   56 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            45799999999999999999999999999954

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.14  E-value=0.006  Score=41.78  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +-+|+|+|||.+|.-+|..+...|.+|+++|.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            4689999999999999999999999999999884

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.13  E-value=0.01  Score=46.41  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|+|||||.+|+.+|..+.+.|.+|+++.+..
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            579999999999999999999999999998764

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.13  E-value=0.015  Score=36.94  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=29.9

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+++|+|| |..|..++..|.+.|.+|.++.|+.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            367999997 9999999999999999999998763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.10  E-value=0.015  Score=40.66  Aligned_cols=34  Identities=24%  Similarity=0.192  Sum_probs=30.8

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .+++|+|.|| |..|..++..|.++|++|+.+++.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            4578999998 999999999999999999999864

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.10  E-value=0.013  Score=41.06  Aligned_cols=35  Identities=17%  Similarity=0.073  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-------CceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-------IKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-------~~v~viE~~~~   39 (115)
                      +.+|.|||+|.-|.++|..|++++       ++|.++.+++.
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~   52 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI   52 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence            458999999999999999999987       79999877653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.09  E-value=0.015  Score=38.07  Aligned_cols=34  Identities=41%  Similarity=0.530  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCc---eEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIK---PLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~---v~viE~~~   38 (115)
                      ..+++|+|+|-+|...|..|.+.|.+   +.|++++.
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            45899999999999999999999975   99999873

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.09  E-value=0.012  Score=40.76  Aligned_cols=31  Identities=32%  Similarity=0.408  Sum_probs=27.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .+|.|+|+|..|.++|..|++.| .+.++.++
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~   38 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRS   38 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence            57999999999999999999999 67777653

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.09  E-value=0.011  Score=40.76  Aligned_cols=33  Identities=30%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|+|+|.=|.++|..|+++|++|.++-+++
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~   34 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDE   34 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCH
Confidence            579999999999999999999999999998753

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.09  E-value=0.011  Score=36.70  Aligned_cols=33  Identities=42%  Similarity=0.519  Sum_probs=27.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|+|-|..|-..|..|+..|.+|+|.|.++
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            579999999999999999999999999999876

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.015  Score=37.59  Aligned_cols=34  Identities=29%  Similarity=0.280  Sum_probs=29.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ...++|+|| |..|..++..|.++|++|.++.+++
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~   40 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ   40 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence            467889885 8889999999999999999998764

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.07  E-value=0.016  Score=39.19  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...|+|+|.|..|-.+|..++++|+.+.++.+...
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~   37 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS   37 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence            46899999999999999999999999988876554

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.06  E-value=0.013  Score=42.35  Aligned_cols=32  Identities=31%  Similarity=0.537  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .+|+|+|.|-+|+++|.+|.+.|+.|.+.|+.
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            56999999999999999999999999999964

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.04  E-value=0.0086  Score=42.87  Aligned_cols=35  Identities=40%  Similarity=0.419  Sum_probs=29.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC-----CCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL-----GIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~-----g~~v~viE~~~   38 (115)
                      +.+|++|||+|++|+.+|+.++..     ...+.++|+..
T Consensus        17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~   56 (486)
T COG2509          17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGL   56 (486)
T ss_pred             hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEecc
Confidence            568999999999999999998863     57889998654

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=96.04  E-value=0.013  Score=40.10  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -.+|.|||+|..|.--|..++..|++|+++|.++.
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~   37 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE   37 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence            36799999999999999999998899999998753

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.03  E-value=0.012  Score=42.34  Aligned_cols=59  Identities=20%  Similarity=0.081  Sum_probs=45.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ...|+++|+|..|+.+|..|...+.+|++++..+.+-..-.+..+...-..+++.-|+.
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk  271 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVK  271 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeE
Confidence            35699999999999999999999999999998887654444444545555666666654

>PLN02256 arogenate dehydrogenase

Probab=96.03  E-value=0.017  Score=39.53  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|.|||.|..|-.+|..|.+.|++|.++++++
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            4589999999999999999999999999998764

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.02  E-value=0.0039  Score=37.22  Aligned_cols=31  Identities=39%  Similarity=0.403  Sum_probs=26.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      ..+|.|||+|-+|..+|..|.+.|+.|.-+.
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~   40 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVY   40 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEES
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            5789999999999999999999999987664

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.01  E-value=0.019  Score=37.38  Aligned_cols=38  Identities=29%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+.....++|+|+ |..|..+|..|.++|++|.+++++.
T Consensus         1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4334467899998 9999999999999999999988764

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.99  E-value=0.017  Score=37.04  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|..|+..|..|++.|+ +++++|...
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            4689999999999999999999998 588887553

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.98  E-value=0.013  Score=41.41  Aligned_cols=40  Identities=30%  Similarity=0.370  Sum_probs=35.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~   40 (115)
                      |.+...|++.||-||.-|.+|..|...+ .+++.+||++..
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            4466799999999999999999999976 789999998875

>PRK05442 malate dehydrogenase; Provisional

Probab=95.98  E-value=0.017  Score=39.88  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCC-------ceEEEcCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGI-------KPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~-------~v~viE~~~   38 (115)
                      .+.+|.|||+ |..|.++|+.|...++       ++.|+|.++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~   45 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP   45 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence            4579999998 9999999999988764       688998754

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.98  E-value=0.0044  Score=43.64  Aligned_cols=45  Identities=29%  Similarity=0.424  Sum_probs=38.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN   48 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~   48 (115)
                      ..+|++|+|-|..=+.++..|+..|.+|+.+||++.-++...++.
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt   47 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT   47 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence            349999999999999999999999999999999998665555443

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.98  E-value=0.02  Score=37.71  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +.+|+|+|+|-.|..+|..|++.|+ +++|+|...
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            5689999999999999999999997 788888543

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.98  E-value=0.036  Score=40.04  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ..+|+|||+|..|+-+|..+.+.|. +|++++....
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~  316 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM  316 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC
Confidence            3579999999999999998888886 7887765543

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=95.97  E-value=0.016  Score=39.93  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=30.1

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCC-------ceEEEcCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGI-------KPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~-------~v~viE~~~   38 (115)
                      .+.+|.|||+ |..|.++|+.|...++       ++.|+|.++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~   44 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP   44 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC
Confidence            3579999998 9999999999998885       688998754

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.96  E-value=0.014  Score=42.01  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHH-HHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLA-TALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~-~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|+|.|-+|+. +|.+|.+.|++|.+.|.+.
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~   41 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE   41 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence            46999999999999 6999999999999999754

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.96  E-value=0.022  Score=34.58  Aligned_cols=35  Identities=40%  Similarity=0.527  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~   39 (115)
                      ..+++|+|+|..|...+..|.+.| .+|.+++++..
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~   54 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE   54 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            467999999999999999999986 78999987643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.95  E-value=0.026  Score=31.14  Aligned_cols=32  Identities=34%  Similarity=0.475  Sum_probs=28.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCceEEEcC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL-GIKPLVLEK   36 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~   36 (115)
                      ..+++|+|+|-+|..++..|.+. +.++.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46799999999999999999998 678889987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.93  E-value=0.021  Score=36.98  Aligned_cols=38  Identities=29%  Similarity=0.392  Sum_probs=31.2

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEE-cCCC
Q 047339            1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVL-EKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~vi-E~~~   38 (115)
                      |..+...++|+|| |..|..+|..|++.|++|.++ .+++
T Consensus         1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~   40 (247)
T PRK05565          1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE   40 (247)
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            4445567899987 788999999999999999988 7654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	3e-23
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	3e-20
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	6e-20
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	3e-19
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	7e-16
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	3e-12
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	3e-12
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	3e-11
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	3e-11
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	4e-11
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	4e-11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	5e-11
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	6e-11
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	7e-11
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	9e-11
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	1e-10
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-10
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	2e-10
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	3e-10
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	3e-10
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	4e-10
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	4e-10
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	4e-10
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	5e-10
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	6e-10
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	6e-10
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	7e-10
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	1e-09
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	2e-09
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	3e-09
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	3e-09
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	3e-09
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	5e-09
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	5e-09
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	6e-09
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	6e-09
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	7e-09
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	8e-09
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	8e-09
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	8e-09
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	9e-09
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	1e-08
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-08
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	1e-08
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-08
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-08
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-08
3dme_A	369	Conserved exported protein; structural genomics, P	2e-08
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	3e-08
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	3e-08
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	3e-08
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	3e-08
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	3e-08
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	5e-08
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	7e-08
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	8e-08
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	8e-08
3atr_A	453	Conserved archaeal protein; saturating double bond	1e-07
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	1e-07
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-07
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-07
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-07
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	2e-07
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	2e-07
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	2e-07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-07
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	3e-07
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	3e-07
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	4e-07
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	5e-07
4fk1_A	304	Putative thioredoxin reductase; structural genomic	6e-07
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	7e-07
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	9e-07
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	1e-06
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	2e-06
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	2e-06
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	2e-06
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	2e-06
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	2e-06
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	2e-06
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	2e-06
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	3e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	3e-06
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	7e-06
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	1e-05
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	1e-05
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	1e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	1e-05
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-05
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	2e-05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	2e-05
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	2e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-05
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	2e-05
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	2e-05
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	3e-05
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	3e-05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	4e-05
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	4e-05
2bry_A	497	NEDD9 interacting protein with calponin homology a	5e-05
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	5e-05
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	5e-05
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	6e-05
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	6e-05
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	7e-05
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	8e-05
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	9e-05
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	9e-05
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	9e-05
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	1e-04
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	2e-04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-04
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	2e-04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	2e-04
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	2e-04
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	2e-04
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	3e-04
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	3e-04
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	4e-04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	4e-04
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	4e-04
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	4e-04
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	5e-04
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	5e-04
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	6e-04

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 91.2 bits (227), Expect = 3e-23
 Identities = 27/80 (33%), Positives = 44/80 (55%)

Query: 7   DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL 66
             ++IGAGI GL+ A+ALK+ GI   V E    ++  GAAI+  PN    +  LG+   +
Sbjct: 25  KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIM 84

Query: 67  ASIYDPVKRLFVTNLRTGAT 86
            +   P++R+   + R+G  
Sbjct: 85  ETFGGPLRRMAYRDFRSGEN 104

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 83.1 bits (206), Expect = 3e-20
 Identities = 22/64 (34%), Positives = 29/64 (45%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
          +   + G G AGL  A+ALK+ G    + EKS  LR  GA I    N    L+ LG    
Sbjct: 12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDD 71

Query: 66 LASI 69
          +   
Sbjct: 72 VLQG 75

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 82.4 bits (204), Expect = 6e-20
 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
          D++I GAGI GL+ ALAL + GI    +LE S  +R  G  IN  P A  AL  LG+   
Sbjct: 6  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65

Query: 66 LASI 69
          LA+ 
Sbjct: 66 LAAT 69

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 80.5 bits (199), Expect = 3e-19
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLRGTGAAINFAPNAWLALDA 59
          M      + ++G  I+GL  AL L+  G+   V E+S   L G G  I   P     L  
Sbjct: 1  MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLE 60

Query: 60 LGVSHKLASIYDPVKRLFVTNLRTGAT 86
           GV  +L SI  P   +   +  TG  
Sbjct: 61 QGV--ELDSISVPSSSMEYVDALTGER 85

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 70.9 bits (174), Expect = 7e-16
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEK--SDGLRGTGAAINFAP-NAWLALDALGV 62
           K+V IIG G  GL  A  L++ GI   V E+      R  G  ++    +   A+   G+
Sbjct: 27  KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGL 86

Query: 63  SHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIH 104
                 +  P+          G    T            +I+
Sbjct: 87  LQTYYDLALPMGVNIAD--EKGNILSTKNVKPENRFDNPEIN 126

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 60.8 bits (147), Expect = 3e-12
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR---GTGAAINFAPNAWLALDALGVS 63
           V IIG G AG    L L +LG    + E+S   R   G        P     L+ LG+ 
Sbjct: 25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGES----LLPGTMSILNRLGLQ 80

Query: 64 HKLASIYDPVKR 75
           K+ +     K 
Sbjct: 81 EKIDAQNYVKKP 92

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          M++V  DVV+IG G +GL+    L+R G+  ++L+      G 
Sbjct: 1  MDSV--DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGA 41

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 19/62 (30%), Positives = 28/62 (45%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDAL 60
          M     DV+I G GI G   A  L R G + +V+E++   R    A    P     ++A 
Sbjct: 2  MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA 61

Query: 61 GV 62
          G+
Sbjct: 62 GL 63

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 3  TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT----GAAINFAPNAWLALD 58
            E DVV+ G GIAG+A ++   R G   LVLE++ G  G     G  I       L   
Sbjct: 39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATALAGGFIYLGGGTPLQKA 98

Query: 59 A 59
           
Sbjct: 99 C 99

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          + T+++DV I+GAG +GLA A AL++ G+   V+E  D
Sbjct: 1  VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARD 38

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 57.1 bits (138), Expect = 4e-11
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR---GTGAAINFAPNAWLAL 57
          M+  + DV++IGAG AG   A  + + G K  ++EK    R   G        P     L
Sbjct: 1  MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGES----LLPRCMEHL 56

Query: 58 DALGVSHKLASIYDPVKR 75
          D  G    + +     K 
Sbjct: 57 DEAGFLDAVKAQGFQQKF 74

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 56.9 bits (137), Expect = 5e-11
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 1  METVEK--DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR---GTGAAINFAPNAWL 55
          M T  +  D+++IG G  G   A  +   G + L+LE+    R   G             
Sbjct: 1  MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESL---LPATVHG 57

Query: 56 ALDALGVSHKLASIYDPVKR 75
              LG++ ++     P+KR
Sbjct: 58 ICAMLGLTDEMKRAGFPIKR 77

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 56.8 bits (137), Expect = 6e-11
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
           K VVI+GAG+AGL+ A  L   G +  VLE S+
Sbjct: 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 56.8 bits (137), Expect = 7e-11
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
            VV++G G AGL +A  L++ G K  VLE   
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKAGYKVTVLEART 44

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 2   ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG----TGAAINFAPNAW 54
            +    V+++GAG AG   +LA K+ G   ++++K+    G    +   +N      
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQ 174

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          M+     V IIGAG AG+  A+ LK  GI  +++ +   +  +
Sbjct: 2  MQHH--KVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHS 42

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-------RGTGAAINFAPNAWLA-- 56
           K V +IGAG++GLA A  LK  G+   V E               G   +   N      
Sbjct: 14  KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESE 73

Query: 57  ------LDALGVSHKLASIYDPVKRLFVTN 80
                 +D+LG+  K        KR    N
Sbjct: 74  GDVTFLIDSLGLREKQQFPLSQNKRYIARN 103

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 16/69 (23%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT-------GAA-------- 46
           T   DVV++GAGIAGL      +  G+     E + G+ G        GA         
Sbjct: 18 GTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDY 77

Query: 47 -INFAPNAW 54
            +F+P   
Sbjct: 78 SYSFSPELE 86

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 7   DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG----TGAAINFAPNAW 54
           DVVIIG+G AGLA A++ +  G K ++LEK     G        +N A    
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKP 179

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
            V++GAG+ GL     L R G + +VLEKS 
Sbjct: 2  RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 54.6 bits (131), Expect = 4e-10
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 2   ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT-------GAAINFAPNAW 54
            T   +V ++G GI+GLA A  L+  G   ++LE S  L G        G  +   PN++
Sbjct: 13  RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF 72

Query: 55  LA--------LDALGVSHKLASIYDPVKRLFV 78
           L           AL +  ++ +     KR +V
Sbjct: 73  LDREPATRALAAALNLEGRIRAADPAAKRRYV 104

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 16/73 (21%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT-------GAA-------- 46
             E DV+++GAG +GL     L+ LG    V+E +  + G        GA         
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEY 72

Query: 47 -INFAPNAWLALD 58
            +F+       +
Sbjct: 73 CYSFSEEVLQEWN 85

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDAL 60
          M   E DV+++GAG+ GL+TA+ L R G++ LV+E+  GL     A    P     L   
Sbjct: 1  MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIG 60

Query: 61 GV 62
          GV
Sbjct: 61 GV 62

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 54.1 bits (129), Expect = 6e-10
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALAL-KRLGIKPLVLEKSD 38
             +  DV++IGAG  GL  A  L +  G   ++++ ++
Sbjct: 6  HPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 53.7 bits (129), Expect = 6e-10
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 3  TVEKDVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGL 40
          + +  + IIGAG AGLA  + L++ G     +LE++D +
Sbjct: 4  SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          D V+IGAG+ G+  A  + + G+K L +E  + + GT
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGT 47

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
           D +I+G+G+ G   A  LK+L  K LV+EK +
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG----TGAAINFAPNAW 54
             DVV++G+G AG + A++    G K +++EK   + G        +N A    
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQ 179

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          M++  K ++I+GAG +G      L   G +  ++++ D
Sbjct: 1  MKS--KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 36

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRL------GIKPLVLEKSDGLRG 42
          M   +K VVIIG GI GLA A  +++        ++  ++E S  + G
Sbjct: 1  MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG 48

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 51.8 bits (123), Expect = 3e-09
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 1  METVE-KDVVIIGAGIAGLATALALKRLGIKP-LVLEKSD 38
          M  +    +VIIGAG  GL  A+ L  LG K   + E +D
Sbjct: 4  MAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND 43

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          + DVV++G GI+G+A A  L   G+  +VLE  D
Sbjct: 4  KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 37

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          D +++G G +GL  A  L   G K L+LE  +
Sbjct: 3  DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 51.3 bits (122), Expect = 6e-09
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
           E+   D +I+GAG AG   A  L   G + L++++  
Sbjct: 25 QESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP 62

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 17/71 (23%), Positives = 31/71 (43%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL 66
           V+++GAG AG+  A  L+  G++ +VLE+     G    + F        D  G+  + 
Sbjct: 13 AVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRF 72

Query: 67 ASIYDPVKRLF 77
            +    +  F
Sbjct: 73 GEVETSTQGHF 83

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46
          D++IIG+G  G A      R G+  L+ +        G+ 
Sbjct: 4  DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH 43

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 50.9 bits (122), Expect = 8e-09
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 3   TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62
            +  DVV++G G  GL  A  L+  G+  LVLEK     G   A          LD  G+
Sbjct: 47  ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGL 106

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 50.9 bits (121), Expect = 8e-09
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKP-LVLEKSD 38
          +   +K V+IIGAGIAGL  A  L + GI+  LVLE  D
Sbjct: 4  VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD 42

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
            V+IGAG+ GL +A  L + G +  V E+  
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLP 33

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 50.8 bits (121), Expect = 9e-09
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 18/92 (19%)

Query: 6  KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL-------RGTGAAINFAPNAWLA 56
          K +VI+G GI GLA A   +R    +   +LE  + L       R  G  I   P++++A
Sbjct: 5  KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVA 64

Query: 57 --------LDALGVSHKLASIYDPVKRLFVTN 80
                  ++A+G+  KL    +  +   +  
Sbjct: 65 RKHILTDLIEAIGLGEKLVRN-NTSQAFILDT 95

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 18/71 (25%), Positives = 29/71 (40%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL 66
           V+++GAG AGL  A  L+  G+  +VLE+     G    + F        D  G+    
Sbjct: 14 SVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAF 73

Query: 67 ASIYDPVKRLF 77
            +    +  F
Sbjct: 74 GPVETSTQGHF 84

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG 61
            +E DV+I+G G  G+A AL L    +  LV+E++DG           P +       G
Sbjct: 23 APIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWG 82

Query: 62 V 62
          V
Sbjct: 83 V 83

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 8  VVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGAAINFAPNAWLALDA 59
          +++IGAG AGL  A  LK+        ++EK+D     G  +            
Sbjct: 3  ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPAN 56

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 3  TVEKDVVIIGAGIAGLATALALKRLGIKP-LVLEKSD 38
          TV   V+++GAG++G++ A  L   GI   L+LE +D
Sbjct: 2  TVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 38

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          DVV++G G  GLATA  +   G + LVLE+  
Sbjct: 6  DVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          K ++I+GAGIAGL     L R G    +LE + 
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANA 77

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          D ++IGAG+ GLA A AL   G + LV E ++G+ GTG 
Sbjct: 6  DCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGI-GTGT 43

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 7  DVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
          DV+I+G G AGL  A  L     I+  ++E+ +G    G A   A       +A   +  
Sbjct: 34 DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS 93

Query: 66 L 66
          +
Sbjct: 94 I 94

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 17/71 (23%)

Query: 1  METVEKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDGLRGT-------GAA------ 46
            T   D V+IGAG  G+     L   LG+  +  +K+DG  GT       GA       
Sbjct: 4  QTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESH 63

Query: 47 ---INFAPNAW 54
              +F  +  
Sbjct: 64 LYRFSFDRDLL 74

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          DV+++GAG  G+A    L + G+K L+++  D     G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 1   METVEKDVVIIGAGIAGLATA--LALKRLGIKPLVLEKSDGLRGTGAAINFAPN------ 52
            +    DV+I+GAG +GL+ A  +A  R  +K  ++E S    G         +      
Sbjct: 61  DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRK 120

Query: 53  -AWLALDALGVSHKLASIYDPVKR--LFVTNLRTGATQE 88
            A L L  L + ++    Y  VK   LF++ + +   Q 
Sbjct: 121 PAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQL 159

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 49.1 bits (116), Expect = 3e-08
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINF 49
           +    DV+I+G G+     +  L   G K LVL+++    G  A++N 
Sbjct: 16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNL 64

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
           DV++IG G  GL     L   G K L+LE  D + G
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 47.9 bits (114), Expect = 7e-08
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGTGAA 46
           ++I+GAG  G +TAL L R G     VL+         A 
Sbjct: 8  SLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAG 48

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643

 Score = 47.9 bits (114), Expect = 8e-08
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLR-GTGAAINFAPNAWLA 56
          E VE D++IIG G +G   A          G+K  ++EK+   R G  A    A N    
Sbjct: 19 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINT--Y 76

Query: 57 LDALGVSHKLASIYDPVK 74
          +D  G S +  ++ D V+
Sbjct: 77 IDLTGRSERQNTLEDYVR 94

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 47.6 bits (114), Expect = 8e-08
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-TGAA 46
          + V+IG GI G A A  L +      + E        T AA
Sbjct: 19 EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAA 59

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          M+ ++ DV+IIG G AG + A  L R G+K L+++ 
Sbjct: 2  MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDS 37

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT--GAAINFAPNAWLALD 58
          M   +K VV++G+G+ GL++AL L R G    +L +      +    A  +A   W    
Sbjct: 2  MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFM 61

Query: 59 ALGVSHKLA 67
           L    + A
Sbjct: 62 TLTDGPRQA 70

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPL---VLEKSDGLRGTGAAINFAPNAWLALD 58
            V+I+GAG+ G   A  L+R    PL   V +K+D   G         N     D
Sbjct: 2  AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTAD 57

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 5  EKDVVIIGAGIAGLATA-LALKRLGIKPLVLEKSD 38
            D+ ++G+G  GL  A     +L  + LVLE+  
Sbjct: 7  RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP 41

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKP--LVLEKSD 38
          + VV++G GI+GLA +  L R    P  +++E S+
Sbjct: 3  RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAW 54
          M+  E DV+++G G+     +  +   G K L ++++    G  ++I      +
Sbjct: 3  MDE-EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELY 55

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-GTGAA 46
          +   E D V+IGAG AG+  AL + + G    +L K    R  T +A
Sbjct: 3  LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSA 49

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-TGAA 46
          M+    D ++IG G+AGL  A+A ++ G+  +VL      R  + AA
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAA 47

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
             V+IIG+G++GLA A  L+  G+   +LE  D + G
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
              V+IIG+G++GLA A  L+  G+   +LE  D + G
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLG------IKPLVLEKS 37
             E DVVI+GAG AGL+ A  LK+L       ++  ++EK+
Sbjct: 32 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 73

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
          DV+IIG   AGL+ AL L R     L+++  + 
Sbjct: 4  DVIIIGGSYAGLSAALQLGRARKNILLVDAGER 36

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGTGA 45
          D V++GAG+ GLA A  LK       LV++      G+G 
Sbjct: 25 DYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA-GHAPGSGD 63

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 45.2 bits (108), Expect = 6e-07
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          D  +IGAG AGL  +L L R   +  + + 
Sbjct: 8  DCAVIGAGPAGLNASLVLGRARKQIALFDN 37

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 45.2 bits (106), Expect = 7e-07
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAP 51
          + DV+++G GI     +  L   G K L ++K D   G  A++  + 
Sbjct: 11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQ 57

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 45.0 bits (106), Expect = 9e-07
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 7  DVVIIGAGIAGLATALAL-----KRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG 61
          DV+I+GAG AGL  A  L     ++  +K  +++K       G A         +L  LG
Sbjct: 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 69

Query: 62 VSHKL 66
          ++ K+
Sbjct: 70 LADKI 74

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
          DV+++G G +GL+ AL L R G+K LVL+    
Sbjct: 3  DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS 35

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKS 37
          ++V+IG GI G+  A  L + G +  V+EK 
Sbjct: 7  EIVVIGGGIVGVTIAHELAKRGEEVTVIEKR 37

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 1   METVEKDVVIIGAGIAGLATA--LALKRLGIKPLVLEKSDGLRG 42
               E D+VI+GAG  GL+ A  L+  R  ++  ++E      G
Sbjct: 75  DAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          M+T    V IIGAG +GL     L + GI  ++LE+
Sbjct: 1  MKT---QVAIIGAGPSGLLLGQLLHKAGIDNVILER 33

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-GTGAA 46
          +   E D V++GAG AGL  A  L   G     + K    R  T AA
Sbjct: 14 VVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAA 60

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          +     DV+IIG+G AGL+ AL L     + +VL K  
Sbjct: 4  LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP 40

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 5   EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62
             D+V+IGAG  G A A  L++L  G   L++E+       GA I  AP  W A D    
Sbjct: 36  AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATIL-APGVWTAQDIPAG 94

Query: 63  SHKLAS 68
               A 
Sbjct: 95  QEAQAE 100

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 7  DVVIIGAGIAGLATALAL-KRLGIKP-LVLEKS 37
          D +I+G G  GLATA  L K  GI    VLEK 
Sbjct: 23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALAL-KRLGIKPLVLEKSDGLRG 42
          +   E DVV++GAG AGL+ A  + K   ++  ++E+S    G
Sbjct: 35 ITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 77

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 42.5 bits (98), Expect = 7e-06
 Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 8/45 (17%)

Query: 6   KDVVIIGAGIAGLATALALKRL--------GIKPLVLEKSDGLRG 42
             + I+G G  G+A    L RL        GI   + E       
Sbjct: 57  YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFL 101

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          M   ++DVVIIGAG AG+  A+   + G + LV++ + 
Sbjct: 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR 60

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEK--SDGLRGTGAAINFAPNAWLALDALG 61
          K + I+GAG AGL   L L++  +   V      D   G       A NA      + 
Sbjct: 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVA 80

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 7  DVVIIGAGIAGLATALALKRLG-----IKPLVLEKSDGLR 41
          D++ +G G + +A A+AL+        ++ L L+K    R
Sbjct: 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR 71

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40
          D ++IGAGIAG +T   L   G + +VLE+    
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHG-RVVVLEREAQP 43

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          DVVI+GAG AG + A+   R G    +L+K
Sbjct: 18 DVVIVGAGAAGFSAAVYAARSGFSVAILDK 47

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Length = 602

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLRG-TGAA 46
          M+T + D+ I+GAG AGL  A+A  +     K  ++ K   +R  T AA
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAA 49

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFA 50
             V+I+GAG +G   A  L   G    + + ++ +   G  +N  
Sbjct: 390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI---GGHLNQV 431

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 3  TVEKDVVIIGAGIAGLATALALKRLGIKPLVLE 35
           ++ DVVI+G+G  G   A  L   G K  + +
Sbjct: 44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFA 50
           K++ ++GAG AGLA A+     G +  + +    +   G   N A
Sbjct: 374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI---GGQFNIA 415

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Length = 549

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 2   ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41
           E + +  ++IG G  GL   L L ++G  P+++E+   +R
Sbjct: 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVR 143

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGLRGT 43
          + + IIGAG +GL TA AL       +  + E+     G 
Sbjct: 7  RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 46

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
          DV+I+G G A    AL   R  +K LV+ ++ G
Sbjct: 17 DVIIVGLGPAAYGAALYSARYMLKTLVIGETPG 49

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          + +IIGAG AGL  A  L +LG    V +   
Sbjct: 6  ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFA 50
             V+++GAG +GL  A AL   G   ++ E    L   G  +   
Sbjct: 392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL---GGRVTQE 433

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 7   DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
           DV+I+G+G AG A A+   R GI+  ++ +  G
Sbjct: 214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERFG 246

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 7   DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSH 64
             +++GAG  GL  A+ L  LG + +++EK          ++  P     L ALG   
Sbjct: 94  KCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-HNVLHLWPFTIHDLRALGAKK 150

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
           DV++IG G +GL  A+     G   L+L+K +
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 59

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEK 36
          VV+IGAG+ GL+TAL +       L    
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Length = 538

 Score = 39.7 bits (91), Expect = 6e-05
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRL---GIKPLVLEKSDGLR-GTGAA 46
          M    K++VI+G G AG   A  L R         ++E +   R G G A
Sbjct: 1  MNKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEA 50

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEKS 37
          + IIG+GIAGL+  +AL+R G K  ++ K 
Sbjct: 2  IYIIGSGIAGLSAGVALRRAGKKVTLISKR 31

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 39.6 bits (92), Expect = 7e-05
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 20/84 (23%)

Query: 6  KDVVIIGAGIAGLATALALK------RLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDA 59
            + I+GAG +G+A   A +          + +  EK     G     N+       LD 
Sbjct: 3  TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQ---WNYTWRT--GLDE 57

Query: 60 LGVSHKLASIYDPVKRLFVTNLRT 83
           G     +S+Y          L +
Sbjct: 58 NGEPVH-SSMYR--------YLWS 72

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 39.3 bits (91), Expect = 8e-05
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAW 54
            V+IG G     +AL L   G++ L+LE        G   N      
Sbjct: 7  PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGML 54

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
          DV+I+G+G AG A A+   R GI+  ++ +  G
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG 35

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 662

 Score = 39.2 bits (91), Expect = 9e-05
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKP------LVLEKSDGLR-GTGAAINFAPNAW 54
               D++++G G+     A    R   K       L+++K+   R G  A    A N +
Sbjct: 19 VEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTY 78

Query: 55 LA 56
          L 
Sbjct: 79 LG 80

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 39.4 bits (90), Expect = 9e-05
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 1  METVEKDVVIIGAGIAGLATALALKR 26
          M      ++I+G G AG   A  L +
Sbjct: 21 MSGKIDKILIVGGGTAGWMAASYLGK 46

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEK 36
            ++IG+G  G   AL L + GI   ++E 
Sbjct: 13 PALVIGSGYGGAVAALRLTQAGIPTQIVEM 42

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPL---VLEKSD 38
            VVI+GAG  G+  A  +K          ++  +D
Sbjct: 5  AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND 40

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          M     DV+I+GAG  GL     +   G+    ++      G
Sbjct: 1  MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG 42

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD---GL 40
             V +IGAG AGLA A  L+  G +  V ++ D   GL
Sbjct: 123 LSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGL 160

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 7   DVVIIGAGIAGLATALALKRLGIKPLVLE 35
           DV+++GAG AGLA A    R G + ++L+
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLD 158

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* Length = 443

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLE 35
          + V ++GAG+AG   A  L RLG+   + E
Sbjct: 2  ERVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 6   KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40
               IIG GI G+  A A+   G    +    +  
Sbjct: 147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP 181

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPL---VLEKSD 38
            V+++G     L  A  LKRL        V+ KS 
Sbjct: 2  TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR 37

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Length = 511

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 6  KDVVIIGAGIAGLATALALKR 26
          + VVI+G G AG  TA  LK 
Sbjct: 3  RSVVIVGGGTAGWMTASYLKA 23

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLV 33
          K+VVIIG G+ GL+        G+ P V
Sbjct: 6  KNVVIIGLGLTGLSCVDFFLARGVTPRV 33

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          +T   D+ IIG G  GL TA           ++E    L G
Sbjct: 4  DTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGG 44

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          M+ +  DV IIG G AG+    A K+   K +++E 
Sbjct: 4  MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEG 39

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 1  METVEK-DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
           +  +  D+ IIG G  G+  A       I   ++E    L G
Sbjct: 9  TDHHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG 51

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLV 33
          K V+++G   +G A A  L +LG    V
Sbjct: 10 KKVLVLGLARSGEAAARLLAKLGAIVTV 37

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} Length = 526

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 1  METVEKDVVIIGAGIAGLATALALKR 26
          M+    +++I+G G AG  TA  L  
Sbjct: 3  MQKPITEIIIVGGGTAGWITAGLLAA 28

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.69
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.67
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.66
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.65
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.63
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.62
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.62
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.61
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.59
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.57
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.56
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.56
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.56
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.54
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.53
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.53
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.51
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.48
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.47
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.47
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.43
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.37
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.35
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.34
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.3
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.29
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.27
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.26
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.24
3atr_A	453	Conserved archaeal protein; saturating double bond	99.23
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.22
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.21
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.2
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.2
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.19
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.19
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.17
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.16
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.16
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.15
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.13
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.13
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.13
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.12
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.12
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.12
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.12
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.1
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.1
3dme_A	369	Conserved exported protein; structural genomics, P	99.1
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.1
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.1
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.08
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.08
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.07
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.07
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.06
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.06
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.05
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.05
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.04
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.03
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.03
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.02
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.02
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.99
4dna_A	463	Probable glutathione reductase; structural genomic	98.99
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.99
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.99
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.99
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.99
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.99
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.98
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.98
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.98
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.98
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.97
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.97
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.97
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.96
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.95
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.95
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.95
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.94
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.93
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.93
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.93
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.93
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.93
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.93
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.92
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.91
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.91
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.91
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.9
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.9
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.9
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.89
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.89
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.88
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.87
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.87
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.87
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.87
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.87
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.86
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.86
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.85
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.85
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.84
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.84
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.83
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.83
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.83
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.82
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.82
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.82
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.82
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.82
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.82
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.81
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.81
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.81
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.81
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.81
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.81
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.8
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.8
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.8
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.79
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.79
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.78
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.78
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.78
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.78
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.78
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.77
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.77
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.76
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.76
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.76
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.75
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.75
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.75
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.75
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.75
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.75
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.74
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.73
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.73
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.72
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.72
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.71
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.71
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.71
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.71
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.7
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.69
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.69
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.68
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.68
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.68
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.67
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.67
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.66
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.66
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.66
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.66
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.65
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.65
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.64
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.64
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.64
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.64
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.63
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.63
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.62
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.62
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.62
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.61
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.61
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.61
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.6
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.6
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.59
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.57
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.57
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.55
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.54
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.53
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.53
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.53
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.51
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	98.49
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.49
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.48
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.48
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.48
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.47
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.47
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.45
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.45
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.42
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.41
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.4
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.39
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.38
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.38
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.35
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.13
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.11
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.03
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.99
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.99
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.98
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.98
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.98
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.96
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.96
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.95
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.93
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.92
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.91
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.89
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.85
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.84
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.82
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.82
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.82
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.82
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.82
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.81
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.81
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.78
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.78
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.76
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.74
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.74
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.74
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.74
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.72
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.72
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.71
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.71
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.71
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.7
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.69
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.68
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.68
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.66
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.66
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.65
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.65
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.63
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.63
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.62
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.6
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.6
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.59
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.57
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.56
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.56
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.56
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.54
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.54
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.53
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.52
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.51
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.51
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.51
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.5
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.48
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.48
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.48
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.48
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.47
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.47
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.47
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.47
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.46
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.45
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.45
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.45
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.44
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.44
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.43
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.42
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.42
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.4
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.4
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.38
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.37
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.37
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.36
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.36
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.35
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.35
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	97.35
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.33
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.32
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	97.31
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.31
4dna_A	463	Probable glutathione reductase; structural genomic	97.3
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.29
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.28
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.28
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.28
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.27
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.26
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	97.26
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.26
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.26
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.25
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.24
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.24
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.23
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.22
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.22
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.22
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.22
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.21
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.21
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.2
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.19
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.19
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.17
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.17
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.17
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.17
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.16
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.16
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.15
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.14
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.14
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.14
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.13
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.11
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.1
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.09
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.09
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.08
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.08
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.08
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.08
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	97.07
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.07
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.06
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.06
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	97.06
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.05
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	97.05
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.05
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.05
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.04
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.03
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.03
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.03
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.02
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.02
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.99
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.99
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.98
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.97
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.96
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.96
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.96
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.95
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.95
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.92
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.92
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.92
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.92
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.91
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.91
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.91
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.91
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.9
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.89
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.88
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.88
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.87
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.87
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.86
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.86
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.86
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.85
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.84
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.83
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.82
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.82
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.82
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.81
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.81
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.79
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.79
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.78
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.77
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.77
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.76
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.75
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.75
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.74
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.74
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.74
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.73
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.69
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.69
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.68
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.68
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.67
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	96.67
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.67
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.65
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.65
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.64
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.63
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.63
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.6
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.59
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.58
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.58
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.55
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.54
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.54
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.53
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.51
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.5
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.49
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.49
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.48
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.47
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.47
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.46
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.45
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.45
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.42
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.42
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.41
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.4
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.39
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.39
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.37
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.36
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.36
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.35
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.34
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.33
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.29
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.27
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.27
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	96.27
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.27
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.26
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.26
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.26
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.26
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.23
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.23
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.23
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.22
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.2
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.19
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.15
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.15
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.14
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.14
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.07
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.07
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.06
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.06
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.06
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.05
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.05
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.05
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.05
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.04
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.04
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.03
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.01
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.01
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.01
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.0
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.0
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	95.99
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.99
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.97
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.95
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.93
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.92
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	95.9
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	95.88
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.86
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.86
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.84
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.83

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.69  E-value=2.9e-16  Score=108.00  Aligned_cols=88  Identities=33%  Similarity=0.527  Sum_probs=74.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRT   83 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~   83 (115)
                      .++||+|||||++||++|+.|+++|++|+|+|+.+.+...++++.+.+++.++|+.+|+++.+.....+.....+++..+
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            35899999999999999999999999999999998877788899999999999999999999998888888888888664


Q ss_pred             Cee-EEeec
Q 047339           84 GAT-QETSL   91 (115)
Q Consensus        84 ~~~-~~~~~   91 (115)
                      +.. ..+++
T Consensus       102 g~~~~~~~~  110 (407)
T 3rp8_A          102 GENMTQFSL  110 (407)
T ss_dssp             CCEEEEEEC
T ss_pred             CCEeEEecc
Confidence            554 55554

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.67  E-value=1e-15  Score=105.53  Aligned_cols=82  Identities=41%  Similarity=0.564  Sum_probs=70.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLR   82 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~   82 (115)
                      .++||+|||||++||++|+.|+++|++ |+|+|+.+.+...+.++.+.+++.++|+.+|+.+.+.....+.....+++ .
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~-~   81 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYID-Q   81 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEC-T
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEc-C
Confidence            358999999999999999999999999 99999988877778889999999999999999999887776666666665 3


Q ss_pred             CCee
Q 047339           83 TGAT   86 (115)
Q Consensus        83 ~~~~   86 (115)
                      .+..
T Consensus        82 ~g~~   85 (410)
T 3c96_A           82 SGAT   85 (410)
T ss_dssp             TSCE
T ss_pred             CCCE
Confidence            4544

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.66  E-value=1.2e-15  Score=111.04  Aligned_cols=79  Identities=27%  Similarity=0.304  Sum_probs=71.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH-----CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEE
Q 047339            4 VEKDVVIIGAGIAGLATALALKR-----LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFV   78 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~-----~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~   78 (115)
                      .++||+||||||+||++|+.|++     .|++|+|+|+.+.+...+++..+.++++++|+.+|+++.+.....++....+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~   86 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIAL   86 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEE
Confidence            46799999999999999999999     9999999999887777888899999999999999999999888888888888


Q ss_pred             EECC
Q 047339           79 TNLR   82 (115)
Q Consensus        79 ~~~~   82 (115)
                      ++..
T Consensus        87 ~~~~   90 (665)
T 1pn0_A           87 YNPD   90 (665)
T ss_dssp             EEEC
T ss_pred             EeCC
Confidence            7643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.65  E-value=1.1e-15  Score=104.76  Aligned_cols=91  Identities=23%  Similarity=0.270  Sum_probs=71.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      |++.++||+|||||++|+++|+.|+++|++|+|+|+.+.+...+++..+.+++.+.|+.+|+.+.+.....+.....+++
T Consensus         2 M~~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   81 (399)
T 2x3n_A            2 MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVY   81 (399)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEe
Confidence            55567899999999999999999999999999999988776677888999999999999999998887666666666665


Q ss_pred             CCCCee-EEeecC
Q 047339           81 LRTGAT-QETSLA   92 (115)
Q Consensus        81 ~~~~~~-~~~~~~   92 (115)
                      . ++.. ..++..
T Consensus        82 ~-~g~~~~~~~~~   93 (399)
T 2x3n_A           82 H-DGELLRYFNYS   93 (399)
T ss_dssp             E-TTEEEEEEETT
T ss_pred             C-CCCEEEecchH
Confidence            3 3433 445443

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.63  E-value=4.8e-15  Score=101.16  Aligned_cols=84  Identities=26%  Similarity=0.298  Sum_probs=73.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTG   84 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~   84 (115)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.+.+...+.++.+.+++.+.|+.+|+.+.+.....+.....+++.  +
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--g   88 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH--N   88 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET--T
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC--C
Confidence            47999999999999999999999999999999888776788899999999999999999999888878888888875  5


Q ss_pred             ee-EEee
Q 047339           85 AT-QETS   90 (115)
Q Consensus        85 ~~-~~~~   90 (115)
                      .. ..++
T Consensus        89 ~~~~~~~   95 (379)
T 3alj_A           89 KSVSKET   95 (379)
T ss_dssp             EEEEEEC
T ss_pred             ceeeecc
Confidence            44 3443

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.62  E-value=6.6e-15  Score=105.06  Aligned_cols=88  Identities=25%  Similarity=0.322  Sum_probs=71.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcce---EEEEE
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKR---LFVTN   80 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~---~~~~~   80 (115)
                      +++||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+.....+...   ..++.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~  104 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVT  104 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEES
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEec
Confidence            357999999999999999999999999999999988877888899999999999999999999877666532   33333


Q ss_pred             CCCCee-EEeec
Q 047339           81 LRTGAT-QETSL   91 (115)
Q Consensus        81 ~~~~~~-~~~~~   91 (115)
                      ...+.. ..+++
T Consensus       105 ~~~g~~~~~~~~  116 (549)
T 2r0c_A          105 RVGGHEVYRIPL  116 (549)
T ss_dssp             SBTSCEEEEECC
T ss_pred             cCCCceeEeecc
Confidence            334443 44444

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.62  E-value=6e-15  Score=101.29  Aligned_cols=84  Identities=29%  Similarity=0.381  Sum_probs=68.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVT   79 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~   79 (115)
                      |++.++||+|||||++|+++|+.|+++|++|+|+|+.+.+ ...+.++.+.+++.++|+.+|+.+  .....+.....++
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~   78 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL--DSISVPSSSMEYV   78 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG--GGTCBCCCEEEEE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc--ccccccccceEEE
Confidence            6667799999999999999999999999999999998764 445778889999999999999987  4555666677777


Q ss_pred             ECCCCee
Q 047339           80 NLRTGAT   86 (115)
Q Consensus        80 ~~~~~~~   86 (115)
                      +..++..
T Consensus        79 ~~~~g~~   85 (397)
T 2vou_A           79 DALTGER   85 (397)
T ss_dssp             ETTTCCE
T ss_pred             ecCCCCc
Confidence            6524544

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.61  E-value=1.9e-15  Score=107.38  Aligned_cols=74  Identities=34%  Similarity=0.473  Sum_probs=67.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcc
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVK   74 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~   74 (115)
                      |+++++||+||||||+||++|+.|+++|++|+|+|+.+.....+++..+.++++++|+.+|+.+.+.....+..
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   74 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRG   74 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSC
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcc
Confidence            77788999999999999999999999999999999998887788888999999999999999999988765543

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.59  E-value=1.5e-14  Score=104.88  Aligned_cols=77  Identities=22%  Similarity=0.261  Sum_probs=69.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            5 EKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      ++||+||||||+||++|+.|++ .|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+.....+.....++..
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~  109 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKP  109 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECC
Confidence            5799999999999999999999 9999999999988877888899999999999999999998877766667777663

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.57  E-value=1.1e-14  Score=103.04  Aligned_cols=67  Identities=24%  Similarity=0.441  Sum_probs=60.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASI   69 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~   69 (115)
                      ++++||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+...
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~   75 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV   75 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc
Confidence            4578999999999999999999999999999999988777788899999999999999999887654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.56  E-value=4e-14  Score=97.47  Aligned_cols=89  Identities=22%  Similarity=0.226  Sum_probs=66.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcc-eEEEE
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVK-RLFVT   79 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~-~~~~~   79 (115)
                      |+++++||+|||||++|+++|+.|+++|++|+|+|+.+.+. ...+..+.++..+.++.+|+.+.+.....+.. ...+.
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~-~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   79 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR-FVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFV   79 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC-CcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEE
Confidence            66677999999999999999999999999999999987653 35566788999999999999988887654433 34443


Q ss_pred             ECCCCeeEEeecC
Q 047339           80 NLRTGATQETSLA   92 (115)
Q Consensus        80 ~~~~~~~~~~~~~   92 (115)
                      + . .....+++.
T Consensus        80 ~-~-~~~~~~~~~   90 (421)
T 3nix_A           80 R-G-KEIADFNFS   90 (421)
T ss_dssp             E-T-TEEEEEETT
T ss_pred             e-C-CeeEEEeeh
Confidence            3 2 233455554

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.56  E-value=9.2e-15  Score=103.36  Aligned_cols=67  Identities=25%  Similarity=0.426  Sum_probs=61.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASI   69 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~   69 (115)
                      ++++||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..++++++++|+.+|+.+.+...
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~   76 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV   76 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc
Confidence            4678999999999999999999999999999999988777788999999999999999999887654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.56  E-value=9.1e-15  Score=104.86  Aligned_cols=71  Identities=28%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPV   73 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~   73 (115)
                      .+++||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.+++.++|+.+|+++.+.......
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~  117 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVA  117 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCccc
Confidence            35689999999999999999999999999999999888778889999999999999999999988766443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.54  E-value=1.8e-14  Score=98.41  Aligned_cols=63  Identities=29%  Similarity=0.350  Sum_probs=55.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC--cceeeeeCccHHHHHHHcCChHHHhc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG--TGAAINFAPNAWLALDALGVSHKLAS   68 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~i~~   68 (115)
                      .+|+||||||+||++|+.|+++|++|+|+||.+.+..  .+.++.++++++++|+.+|+.+.+..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~   66 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLA   66 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHH
Confidence            4899999999999999999999999999999887644  36678899999999999999876643

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.53  E-value=1.7e-14  Score=92.40  Aligned_cols=41  Identities=39%  Similarity=0.558  Sum_probs=36.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      |++||+||||||+||++|+.|+++|++|+|+||.+.+++..
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~   41 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRM   41 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            56899999999999999999999999999999998876543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.53  E-value=1.3e-14  Score=99.37  Aligned_cols=77  Identities=25%  Similarity=0.236  Sum_probs=63.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      |++||+|||||++|+++|+.|++.|++|+|+|+.+.+  ....++..+.+++.++|+.+|+++.+.....+.....+++
T Consensus         1 m~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   79 (394)
T 1k0i_A            1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAF   79 (394)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEE
T ss_pred             CCccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEE
Confidence            4689999999999999999999999999999998742  1123334588999999999999998887666666666665

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.51  E-value=4.1e-14  Score=96.07  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=54.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc-ceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT-GAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLR   82 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~   82 (115)
                      +|||+||||||+||++|+.|+++|++|+|+|+.+.++.. .++..+.+   +.++.+++.........++....++...
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~   79 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSK---GILNEADIKADRSFIANEVKGARIYGPS   79 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEET---HHHHHTTCCCCTTTEEEEESEEEEECTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCH---HHHHHcCCCchhhhhhcccceEEEEeCC
Confidence            489999999999999999999999999999998775432 22344544   3677777654444444455566666543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.48  E-value=6.1e-13  Score=95.82  Aligned_cols=69  Identities=29%  Similarity=0.380  Sum_probs=59.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVK   74 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~   74 (115)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.+.+. ...+..+.+...+.++.+|+++.+........
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~-~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~   91 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR-YRVGESLLPGTMSILNRLGLQEKIDAQNYVKK   91 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC-CCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC-CceeeeECHHHHHHHHHcCCcHHHHhcCCccc
Confidence            5899999999999999999999999999999986653 34567788999999999999988877654433

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.47  E-value=2.7e-13  Score=93.12  Aligned_cols=81  Identities=23%  Similarity=0.374  Sum_probs=62.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC--cceeeeeCc-cHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG--TGAAINFAP-NAWLALDALGVSHKLASIYDPVKRLFVTN   80 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~--~~~~~~~~~-~~~~~l~~~g~~~~i~~~~~~~~~~~~~~   80 (115)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.+.+..  .+.++.+.+ +..+.|+.+|+.+.+.....+... .+++
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~~  103 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGV-NIAD  103 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCE-EEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccce-EEEC
Confidence            357999999999999999999999999999999876533  344455554 568999999999998876666555 5554


Q ss_pred             CCCCee
Q 047339           81 LRTGAT   86 (115)
Q Consensus        81 ~~~~~~   86 (115)
                       .++..
T Consensus       104 -~~g~~  108 (398)
T 2xdo_A          104 -EKGNI  108 (398)
T ss_dssp             -SSSEE
T ss_pred             -CCCCc
Confidence             44544

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.47  E-value=5e-13  Score=94.64  Aligned_cols=89  Identities=19%  Similarity=0.181  Sum_probs=64.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHH-HHHHcCChHHHhcccCCcceEEEEEC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWL-ALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      +.++||+|||||++|+++|+.|+++|++|+|+|+.+.+. ...+..+.++... +++.+|+.+.+.....+......+.+
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   83 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR-HQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRW   83 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEEC
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCC-CCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEe
Confidence            346899999999999999999999999999999987543 3345556666554 89999999988877666555444443


Q ss_pred             CCC-eeEEeecC
Q 047339           82 RTG-ATQETSLA   92 (115)
Q Consensus        82 ~~~-~~~~~~~~   92 (115)
                      ... ..+.+.+.
T Consensus        84 ~~~~~~~~~~~~   95 (512)
T 3e1t_A           84 GKEPEPWTFGFT   95 (512)
T ss_dssp             SSCSSCEEEESS
T ss_pred             cCCccccccccc
Confidence            322 22444444

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.43  E-value=3.5e-13  Score=95.67  Aligned_cols=80  Identities=20%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHH------------CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHH--H
Q 047339            1 METVEKDVVIIGAGIAGLATALALKR------------LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK--L   66 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~------------~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--i   66 (115)
                      |++..+||+|||||++|+++|+.|++            .|++|+|+|+.+.+. .+.+..+.++..++|+.+|+.+.  +
T Consensus         3 m~~~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~-~g~g~~~~p~~~~~l~~lGi~e~~~~   81 (526)
T 2pyx_A            3 MQKPITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVAT-IGVGEGTWPSMRSTLSKIGIDENDFI   81 (526)
T ss_dssp             GGSCCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCC-CCSCEECCTHHHHHHHHHTCCHHHHH
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCC-cceeeechHhHHHHHHHcCCCHHHHH
Confidence            33456899999999999999999999            999999999876543 33477788999999999999876  5


Q ss_pred             hcccCC-cceEEEEEC
Q 047339           67 ASIYDP-VKRLFVTNL   81 (115)
Q Consensus        67 ~~~~~~-~~~~~~~~~   81 (115)
                      ...... .....+.++
T Consensus        82 ~~~~~~~~~g~~~~~~   97 (526)
T 2pyx_A           82 RQCDASFKQGSRFINW   97 (526)
T ss_dssp             HHTTCEEECEEEEESC
T ss_pred             HHcCCEEECCCcccCC
Confidence            554332 234444433

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.37  E-value=2.3e-12  Score=92.02  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=60.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCCCCcceeeeeCccHHH-HHHHcCChHH--HhcccCCc-
Q 047339            1 METVEKDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGLRGTGAAINFAPNAWL-ALDALGVSHK--LASIYDPV-   73 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~--i~~~~~~~-   73 (115)
                      |++..+||+|||||++|+++|+.|++   .|++|+|+|+.+.+. .+.+..+.++..+ +++.+|+.+.  +......+ 
T Consensus        21 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~   99 (550)
T 2e4g_A           21 MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPT-LGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYK   99 (550)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCC-CCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEE
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCc-cceeeeechhHHHHHHHHhCCChHHHHHhcCCeEE
Confidence            44446899999999999999999999   999999999976543 3345778888899 9999999765  55443333 


Q ss_pred             ceEEEEEC
Q 047339           74 KRLFVTNL   81 (115)
Q Consensus        74 ~~~~~~~~   81 (115)
                      ....+..+
T Consensus       100 ~g~~~~~w  107 (550)
T 2e4g_A          100 VAIKFINW  107 (550)
T ss_dssp             CEEEEESS
T ss_pred             EeeeEeec
Confidence            23444443

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.35  E-value=3.1e-12  Score=91.01  Aligned_cols=64  Identities=28%  Similarity=0.361  Sum_probs=53.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCCCCcceeeeeCccHHH-HHHHcCChHH
Q 047339            1 METVEKDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGLRGTGAAINFAPNAWL-ALDALGVSHK   65 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~   65 (115)
                      |++..+||+|||||++|+++|+.|++   .|++|+|+|+...+. .+.+..+.++..+ +++.+|+.+.
T Consensus         1 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~lG~~~~   68 (538)
T 2aqj_A            1 MNKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR-IGVGEATIPSLQKVFFDFLGIPER   68 (538)
T ss_dssp             -CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC-CCSCEECCTHHHHHTHHHHTCCHH
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-cCCCcccchhHHHHHHHHhCCCHH
Confidence            55556899999999999999999999   999999999965443 3336677888888 9999998754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.30  E-value=1.4e-12  Score=90.62  Aligned_cols=67  Identities=31%  Similarity=0.414  Sum_probs=50.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCC------CceEEEcCCCCCCCccee---------------eeeCccHHHHHHH
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLG------IKPLVLEKSDGLRGTGAA---------------INFAPNAWLALDA   59 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g------~~v~viE~~~~~~~~~~~---------------~~~~~~~~~~l~~   59 (115)
                      |+.+++||+|||||++||++|+.|+++|      ++|+|+|+.+.+++...+               ....++..+++++
T Consensus         1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~   80 (470)
T 3i6d_A            1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKD   80 (470)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHH
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHH
Confidence            7677899999999999999999999999      999999998776543221               1224567789999


Q ss_pred             cCChHHHh
Q 047339           60 LGVSHKLA   67 (115)
Q Consensus        60 ~g~~~~i~   67 (115)
                      +|+.+.+.
T Consensus        81 lgl~~~~~   88 (470)
T 3i6d_A           81 LGLEHLLV   88 (470)
T ss_dssp             TTCCTTEE
T ss_pred             cCCcceee
Confidence            99875543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.29  E-value=3.1e-12  Score=85.08  Aligned_cols=38  Identities=34%  Similarity=0.601  Sum_probs=34.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+.++|||+||||||+|+++|+.|++.|++|+|+|+..
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            88889999999999999999999999999999999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.27  E-value=5.1e-12  Score=89.24  Aligned_cols=66  Identities=27%  Similarity=0.301  Sum_probs=50.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHH--Hhccc
Q 047339            4 VEKDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK--LASIY   70 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--i~~~~   70 (115)
                      |.+||+|||||++|+++|+.|++   +|++|+|+|+.+.+ ..+.+..+.++..++++.+|+.+.  +....
T Consensus         1 m~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~-~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~   71 (511)
T 2weu_A            1 MIRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVR-RIGVGEATFSTVRHFFDYLGLDEREWLPRCA   71 (511)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHHTCCHHHHHHHTT
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCC-ceeeccccCcchHHHHHHcCCCHHHHHHHcC
Confidence            35799999999999999999999   99999999997643 334466678888999999999765  54433

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.26  E-value=2.4e-12  Score=87.99  Aligned_cols=50  Identities=28%  Similarity=0.270  Sum_probs=44.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCCcceeeeeCccHHH
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGAAINFAPNAWL   55 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~   55 (115)
                      +||+||||||+|+++|+.|+++  |++|+|+|+.+.+...+.++.+++++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~   52 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQ   52 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHH
Confidence            3899999999999999999999  9999999998887667788888887766

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.24  E-value=7.1e-12  Score=88.10  Aligned_cols=41  Identities=29%  Similarity=0.493  Sum_probs=36.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCCCCCcc
Q 047339            4 VEKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~~~~~~   44 (115)
                      +.+||+|||||++||++|+.|++ .|++|+|+|+++.+++..
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~   50 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA   50 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCe
Confidence            46899999999999999999987 599999999999887644

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.23  E-value=1e-11  Score=86.60  Aligned_cols=59  Identities=31%  Similarity=0.432  Sum_probs=46.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC--CcceeeeeCccHHHHHHHcCChH
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR--GTGAAINFAPNAWLALDALGVSH   64 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~   64 (115)
                      ++++||+||||||+|+++|+.|+++|++|+|+|+.+.+.  ....+..+   ..+.++.+|+.+
T Consensus         4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~lg~~~   64 (453)
T 3atr_A            4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKLGMPY   64 (453)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHTTCCC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHhcCCC
Confidence            457899999999999999999999999999999987532  22233333   457788888754

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.22  E-value=1.9e-11  Score=84.94  Aligned_cols=60  Identities=23%  Similarity=0.203  Sum_probs=42.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC---Cccee-eeeCccHHHHHHHcCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR---GTGAA-INFAPNAWLALDALGV   62 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~---~~~~~-~~~~~~~~~~l~~~g~   62 (115)
                      .|++||+||||||+|+++|+.|+++|++|+|+|+.+...   +...+ ..........++.+|+
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~   83 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDV   83 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcCh
Confidence            467899999999999999999999999999999876321   11111 2234456667777765

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.21  E-value=3.3e-11  Score=83.71  Aligned_cols=63  Identities=35%  Similarity=0.521  Sum_probs=48.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee------------e---CccHHHHHHHcCCh
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN------------F---APNAWLALDALGVS   63 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~------------~---~~~~~~~l~~~g~~   63 (115)
                      |+..++||+|||||++||++|+.|++.|++|+|+|+++.+++...+..            +   .+...++++++|+.
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~   78 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLK   78 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCc
Confidence            666678999999999999999999999999999999887765433211            1   23455677777764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.20  E-value=7.2e-11  Score=82.51  Aligned_cols=64  Identities=28%  Similarity=0.453  Sum_probs=50.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeee---------------CccHHHHHHHcCChHHHh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINF---------------APNAWLALDALGVSHKLA   67 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~---------------~~~~~~~l~~~g~~~~i~   67 (115)
                      .++||+|||||++||++|+.|+++|++|+|+|+++.+++...+...               .+...++++.+|+.+.+.
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~   93 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIR   93 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCcceee
Confidence            3679999999999999999999999999999999887654332211               345778999999876544

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.20  E-value=3.2e-11  Score=80.92  Aligned_cols=60  Identities=28%  Similarity=0.411  Sum_probs=44.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH--CCCceEEEcCCCCCCCccee-------eeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKR--LGIKPLVLEKSDGLRGTGAA-------INFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~--~g~~v~viE~~~~~~~~~~~-------~~~~~~~~~~l~~~g~~   63 (115)
                      .++||+||||||+||++|++|++  .|++|+|+|+.+.+++....       ..+.....++++.+|+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~  132 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIP  132 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCE
Confidence            35799999999999999999975  59999999998876543221       22334455677777653

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.19  E-value=4.7e-11  Score=84.40  Aligned_cols=58  Identities=28%  Similarity=0.445  Sum_probs=48.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV   62 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~   62 (115)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+..+ ......+.+...+.++.+|+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g-~~~~~~~~~~~~~~l~~~g~  148 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS-RHNVLHLWPFTIHDLRALGA  148 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC-CCCEEECCHHHHHHHHTTTH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccC-CCCcccCChhHHHHHHHcCC
Confidence            46899999999999999999999999999999987764 33556677777888877776

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.17  E-value=2.8e-11  Score=80.21  Aligned_cols=37  Identities=41%  Similarity=0.583  Sum_probs=33.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+.+ +||+||||||+|+++|+.|++.|++|+|+|+..
T Consensus         1 M~~~-yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            1 MSNI-HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             -CCC-EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCC-CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            6554 899999999999999999999999999999865

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.16  E-value=4.7e-11  Score=85.90  Aligned_cols=54  Identities=37%  Similarity=0.533  Sum_probs=44.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC------CCceEEEcCCCCCCCc-ceeeeeCccHHHHH
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL------GIKPLVLEKSDGLRGT-GAAINFAPNAWLAL   57 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~------g~~v~viE~~~~~~~~-~~~~~~~~~~~~~l   57 (115)
                      |++||+|||||++|+++|+.|++.      |++|+|+|+.+.++.. ..+..+.++.++.|
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l   94 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL   94 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH
Confidence            568999999999999999999999      9999999998776542 34556777776655

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.16  E-value=4.1e-11  Score=83.67  Aligned_cols=63  Identities=29%  Similarity=0.497  Sum_probs=47.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCCCCCcceeee-------------e------CccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGLRGTGAAIN-------------F------APNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~~~~~~~~~~-------------~------~~~~~~~l~~~g~~   63 (115)
                      ++||+|||||++||++|+.|+++|.  +|+|+|+.+.+++...+..             +      .+...++++++|+.
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~   81 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLD   81 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCG
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCc
Confidence            4799999999999999999999999  9999999887654332211             1      11235788888887


Q ss_pred             HHHh
Q 047339           64 HKLA   67 (115)
Q Consensus        64 ~~i~   67 (115)
                      +.+.
T Consensus        82 ~~~~   85 (477)
T 3nks_A           82 SEVL   85 (477)
T ss_dssp             GGEE
T ss_pred             ceee
Confidence            6544

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.15  E-value=3.4e-11  Score=84.63  Aligned_cols=40  Identities=43%  Similarity=0.622  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~   45 (115)
                      ++|+|||||++||++|+.|+++|++|+|+|+++.+++...
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~   41 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAY   41 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------C
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEE
Confidence            7899999999999999999999999999999998866443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.13  E-value=1.3e-10  Score=82.19  Aligned_cols=60  Identities=30%  Similarity=0.471  Sum_probs=46.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee-------------e---CccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN-------------F---APNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~-------------~---~~~~~~~l~~~g~~   63 (115)
                      +++||+|||||++||++|+.|+++|++|+|+|+++.+++......             +   .+...++++++|+.
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~   78 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLE   78 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCc
Confidence            458999999999999999999999999999999887754332111             1   23456677777765

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.13  E-value=1.6e-10  Score=81.24  Aligned_cols=62  Identities=32%  Similarity=0.479  Sum_probs=49.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee------------e---eCccHHHHHHHcCChHHH
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI------------N---FAPNAWLALDALGVSHKL   66 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~------------~---~~~~~~~~l~~~g~~~~i   66 (115)
                      ++||+|||||++||++|+.|+++|++|+|+|+.+.+++.....            .   ..+...++++.+|+.+.+
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~~   89 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQ   89 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCcccc
Confidence            4799999999999999999999999999999998876533211            1   135577899999987653

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.13  E-value=6e-11  Score=78.73  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=32.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|||+||||||+|+++|+.|++.|++|+|+|+...
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~   40 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN   40 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            358999999999999999999999999999998653

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.12  E-value=1.1e-10  Score=80.46  Aligned_cols=42  Identities=38%  Similarity=0.633  Sum_probs=36.9

Q ss_pred             CC-CccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCC
Q 047339            1 ME-TVEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRG   42 (115)
Q Consensus         1 m~-~~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~   42 (115)
                      |+ .+++||+|||||++||++|+.|+++| ++|+|+|+.+.+++
T Consensus         1 M~~~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG   44 (424)
T 2b9w_A            1 MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG   44 (424)
T ss_dssp             -CCCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSST
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCC
Confidence            54 35789999999999999999999999 99999999887754

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.12  E-value=2.3e-10  Score=80.38  Aligned_cols=62  Identities=29%  Similarity=0.519  Sum_probs=48.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee---------------eCccHHHHHHHcCChHHHh
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN---------------FAPNAWLALDALGVSHKLA   67 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~---------------~~~~~~~~l~~~g~~~~i~   67 (115)
                      +||+|||||++||++|+.|+++|++|+|+|+.+.+++......               ..++..+.++++|+.+.+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~~~  116 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALS  116 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTCEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcceee
Confidence            7999999999999999999999999999999988765433211               2355677888888755443

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.12  E-value=8.3e-11  Score=81.63  Aligned_cols=41  Identities=37%  Similarity=0.559  Sum_probs=34.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      |.+.++||+|||||++|+++|+.|+++|++|+|+|+.+.++
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g   63 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPG   63 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            34456899999999999999999999999999999988753

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.12  E-value=1.2e-10  Score=80.46  Aligned_cols=38  Identities=37%  Similarity=0.627  Sum_probs=34.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      +||+|||||++|+++|+.|+++|++|+|+|+.+..++.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   39 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR   39 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCe
Confidence            79999999999999999999999999999997766543

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.10  E-value=2.8e-10  Score=79.82  Aligned_cols=40  Identities=38%  Similarity=0.557  Sum_probs=36.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++||+|||||++||++|+.|+++|++|+|+|+.+.+++.
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~   49 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR   49 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            4689999999999999999999999999999998877654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.10  E-value=1.3e-10  Score=80.08  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=35.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCCCCc
Q 047339            5 EKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGLRGT   43 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~~~~   43 (115)
                      ++||+|||||++||++|+.|+++ |++|+|+|+.+.+++.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~   46 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN   46 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCe
Confidence            68999999999999999999999 9999999998876543

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.10  E-value=1.3e-10  Score=78.34  Aligned_cols=36  Identities=44%  Similarity=0.662  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~   38 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG   38 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            458999999999999999999999999999999864

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.10  E-value=1.9e-10  Score=77.97  Aligned_cols=60  Identities=33%  Similarity=0.504  Sum_probs=45.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCCcc-------eeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTG-------AAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~~~-------~~~~~~~~~~~~l~~~g~~   63 (115)
                      .++||+|||||++|+++|+.|+++  |++|+|+|+...+++..       ....+.+...++|+.+|+.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~  146 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVP  146 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCc
Confidence            468999999999999999999997  99999999987654221       1223345567788877753

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.10  E-value=1e-10  Score=82.84  Aligned_cols=40  Identities=50%  Similarity=0.698  Sum_probs=36.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~~   43 (115)
                      +++||+|||||++||++|+.|+++| ++|+|+|+.+.+++.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr   47 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR   47 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCc
Confidence            4579999999999999999999999 999999999887654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.08  E-value=2.1e-10  Score=80.18  Aligned_cols=42  Identities=31%  Similarity=0.437  Sum_probs=38.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA   46 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~   46 (115)
                      ++||+|||+|++||++|..|+++|++|+|+|+++.+++...+
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            589999999999999999999999999999999988765544

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.08  E-value=2.5e-10  Score=75.40  Aligned_cols=38  Identities=34%  Similarity=0.566  Sum_probs=34.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~~   41 (115)
                      .++||+|||||++|+++|+.|+++ |.+|+|+|+.+.++
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~g   76 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   76 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence            357999999999999999999997 99999999987654

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.07  E-value=1.8e-10  Score=80.39  Aligned_cols=40  Identities=33%  Similarity=0.576  Sum_probs=35.1

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +.+++||+|||||++|+++|+.|+++|.+|+|+|+.+.++
T Consensus        23 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g   62 (447)
T 2i0z_A           23 NAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG   62 (447)
T ss_dssp             --CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            3467899999999999999999999999999999987653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.07  E-value=3.8e-10  Score=77.40  Aligned_cols=39  Identities=38%  Similarity=0.602  Sum_probs=35.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC-CCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~-~~~~~   42 (115)
                      .++||+|||||++||++|+.|+++|++|+|+|++ +.+++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGG   82 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG   82 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCC
Confidence            4679999999999999999999999999999998 66544

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.06  E-value=2.7e-10  Score=79.59  Aligned_cols=63  Identities=32%  Similarity=0.417  Sum_probs=49.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCCCccee---------------eeeCccHHHHHHHcCChHHHh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLRGTGAA---------------INFAPNAWLALDALGVSHKLA   67 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~~~~~~---------------~~~~~~~~~~l~~~g~~~~i~   67 (115)
                      ++||+|||||++||++|+.|+++|  ++|+|+|+.+..++...+               ....+...++++++|+...+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~~~   83 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEKLV   83 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGGGEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcceEe
Confidence            579999999999999999999999  999999998766442211               122455778999999876554

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.06  E-value=2e-10  Score=77.75  Aligned_cols=39  Identities=36%  Similarity=0.572  Sum_probs=34.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |.++++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus         2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            335578999999999999999999999999999998764

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.05  E-value=3.4e-10  Score=78.40  Aligned_cols=38  Identities=34%  Similarity=0.409  Sum_probs=34.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~~   41 (115)
                      .++||+|||||++|+++|+.|+++|+ +|+|+|+...++
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~   43 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPS   43 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCC
Confidence            46899999999999999999999999 999999987654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.05  E-value=1.7e-10  Score=82.64  Aligned_cols=40  Identities=30%  Similarity=0.433  Sum_probs=35.7

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .+.++||+|||||++|+.+|+.|+++|++|+|+|+.+...
T Consensus        15 ~~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~   54 (561)
T 3da1_A           15 SEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFAS   54 (561)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence            3456899999999999999999999999999999986543

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.05  E-value=3.1e-10  Score=78.27  Aligned_cols=39  Identities=38%  Similarity=0.519  Sum_probs=35.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      +||+|||||++||++|+.|+++|++|+|+|+++.+++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~   39 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRF   39 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcee
Confidence            389999999999999999999999999999988775543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.05  E-value=2.6e-10  Score=78.01  Aligned_cols=36  Identities=42%  Similarity=0.586  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ++||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   39 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFF   39 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            589999999999999999999999999999998764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.04  E-value=2.9e-10  Score=78.29  Aligned_cols=39  Identities=33%  Similarity=0.428  Sum_probs=35.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      +||+|||||++||++|+.|+++|++|+|+|+.+.+++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~   39 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRF   39 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCce
Confidence            489999999999999999999999999999988775443

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.04  E-value=3.8e-10  Score=76.74  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=34.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |...++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus         1 Mm~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~   39 (382)
T 1y56_B            1 MLPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFI   39 (382)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            434578999999999999999999999999999999853

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.03  E-value=3e-10  Score=75.93  Aligned_cols=41  Identities=24%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      |.+.++||+|||||++|+++|+.|++.|++|+|+|+.+..+
T Consensus         1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   41 (335)
T 2zbw_A            1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPG   41 (335)
T ss_dssp             --CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSC
T ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            44557899999999999999999999999999999987653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.03  E-value=3.9e-10  Score=76.72  Aligned_cols=38  Identities=32%  Similarity=0.584  Sum_probs=34.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      |++||+|||||++|+++|+.|+++|++|+|+|+.....
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            56899999999999999999999999999999977543

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.02  E-value=2.6e-10  Score=77.19  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      |++||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus         1 m~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~   37 (372)
T 2uzz_A            1 MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPP   37 (372)
T ss_dssp             -CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4689999999999999999999999999999998654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.02  E-value=3.2e-10  Score=80.33  Aligned_cols=39  Identities=46%  Similarity=0.737  Sum_probs=35.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||+|++||++|+.|+++|++|+|+||.+..++
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG   78 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG   78 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            468999999999999999999999999999999887643

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.99  E-value=1.2e-09  Score=76.08  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=38.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI   47 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~   47 (115)
                      .++||+|||+|++|+++|..|+++|++|+|+|+++..++...+.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~   48 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI   48 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccccc
Confidence            35899999999999999999999999999999998776554433

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.99  E-value=3.2e-10  Score=79.34  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=33.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      |+++++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~   37 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF   37 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            6666799999999999999999999999999999993

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.99  E-value=7e-10  Score=76.61  Aligned_cols=40  Identities=30%  Similarity=0.466  Sum_probs=36.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++||+|||||++|+++|+.|+++|++|+|+|+.+..++.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~   67 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGN   67 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGG
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCc
Confidence            4689999999999999999999999999999998776543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.99  E-value=5.8e-10  Score=76.21  Aligned_cols=39  Identities=38%  Similarity=0.403  Sum_probs=34.8

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHH-CC-CceEEEcCCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKR-LG-IKPLVLEKSDGL   40 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~-~g-~~v~viE~~~~~   40 (115)
                      ...++||+|||||++|+++|+.|++ +| ++|+|+|+....
T Consensus        18 ~~~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~   58 (405)
T 2gag_B           18 PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA   58 (405)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTT
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            3456899999999999999999999 99 999999998743

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.99  E-value=6.2e-10  Score=75.59  Aligned_cols=37  Identities=27%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~   52 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMG   52 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999997654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.99  E-value=8.9e-10  Score=74.25  Aligned_cols=59  Identities=31%  Similarity=0.432  Sum_probs=44.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCCcce-------eeeeCccHHHHHHHcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGA-------AINFAPNAWLALDALGV   62 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~~~~-------~~~~~~~~~~~l~~~g~   62 (115)
                      .++||+|||+|++|+++|+.|++.  |++|+|+|+.+.+++...       ...+.+...++|+.+|+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv  131 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEI  131 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCc
Confidence            356999999999999999999998  999999999877642211       12333455677777765

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.99  E-value=5.4e-10  Score=73.26  Aligned_cols=36  Identities=36%  Similarity=0.555  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |++||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus         1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   36 (297)
T 3fbs_A            1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGER   36 (297)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence            358999999999999999999999999999998653

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.98  E-value=5.8e-10  Score=77.01  Aligned_cols=37  Identities=35%  Similarity=0.513  Sum_probs=34.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||||++|+++|+.|+++|.+|+|+|+.+.+
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            3589999999999999999999999999999998765

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.98  E-value=5.4e-10  Score=76.95  Aligned_cols=37  Identities=38%  Similarity=0.501  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      .++||+|||||++|+++|+.|+++  |++|+|+|+....
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~   73 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP   73 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            458999999999999999999999  9999999997544

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.98  E-value=4e-10  Score=76.32  Aligned_cols=37  Identities=38%  Similarity=0.513  Sum_probs=33.4

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.++||+|||||++|+++|+.|+ +|++|+|+|+.+.+
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            34789999999999999999999 69999999998654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.98  E-value=4.4e-10  Score=79.15  Aligned_cols=41  Identities=34%  Similarity=0.580  Sum_probs=34.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      ++++||+|||||++|+++|+.|++.|++|+|+|+.+..++.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~   63 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGT   63 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            35689999999999999999999999999999987766543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.97  E-value=6.3e-10  Score=78.29  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=32.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            4589999999999999999999999999999994

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.97  E-value=1.5e-09  Score=76.35  Aligned_cols=40  Identities=45%  Similarity=0.600  Sum_probs=36.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++||+|||||++||++|+.|++.|++|+|+|+.+..++.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~   71 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   71 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCc
Confidence            3579999999999999999999999999999998876554

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.97  E-value=4.2e-10  Score=80.63  Aligned_cols=40  Identities=30%  Similarity=0.532  Sum_probs=36.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.++||+|||+|++|+++|+.|+++|++|+|+|+.+..++
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg  158 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG  158 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            3568999999999999999999999999999999887643

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.96  E-value=9.5e-10  Score=70.60  Aligned_cols=35  Identities=34%  Similarity=0.498  Sum_probs=32.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++||+|||||++|+.+|+.|++.|.+|+|+|+..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            35899999999999999999999999999999873

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.95  E-value=6.8e-10  Score=74.00  Aligned_cols=36  Identities=39%  Similarity=0.528  Sum_probs=32.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+++||+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            356899999999999999999999999999999954

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.95  E-value=1.1e-09  Score=76.38  Aligned_cols=39  Identities=31%  Similarity=0.377  Sum_probs=35.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGLR   41 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~~~   41 (115)
                      .+.+||+|||||++|+++|..|++.|.  +|+|+|+.+..+
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~G   44 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG   44 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCC
Confidence            356899999999999999999999999  999999986553

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.95  E-value=1.3e-09  Score=76.82  Aligned_cols=42  Identities=36%  Similarity=0.478  Sum_probs=36.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCCcc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGTG   44 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~~~   44 (115)
                      .+++||+|||||++||++|+.|+++| .+|+|+|+.+.+++..
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~   49 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLS   49 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGG
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCee
Confidence            34689999999999999999999998 7999999998775543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.94  E-value=7.7e-10  Score=74.43  Aligned_cols=37  Identities=35%  Similarity=0.496  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGLRG   42 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~~~   42 (115)
                      +||+|||||++|+++|+.|++   +|++|+|+|+....++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg   41 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGG   41 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCG
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCcc
Confidence            689999999999999999999   9999999999876543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.93  E-value=6.6e-10  Score=78.42  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=34.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |++.++||+||||||+|+++|..|++.|++|+|+|+.+
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            44456899999999999999999999999999999975

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.93  E-value=1.1e-09  Score=72.49  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   47 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET   47 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            3589999999999999999999999999999997

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.93  E-value=6.9e-10  Score=77.75  Aligned_cols=40  Identities=35%  Similarity=0.499  Sum_probs=35.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      +++||+|||||++|+++|..|++.|++|+|+|+.+..++.
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~   42 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGN   42 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCc
Confidence            4689999999999999999999999999999987776544

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.93  E-value=1.4e-09  Score=77.91  Aligned_cols=39  Identities=33%  Similarity=0.550  Sum_probs=35.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||+|++|+++|+.|+++|++|+|+|+.+..++
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg  163 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG  163 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            468999999999999999999999999999999887643

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.93  E-value=1.1e-09  Score=73.25  Aligned_cols=37  Identities=32%  Similarity=0.581  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.+.++
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g   39 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPG   39 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            4799999999999999999999999999999987643

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.93  E-value=1.5e-09  Score=74.11  Aligned_cols=38  Identities=39%  Similarity=0.623  Sum_probs=34.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      +|++|||||++|+++|+.|+++|++|+|+|+.+.+++.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~   39 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcc
Confidence            69999999999999999999999999999998876554

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.92  E-value=1.9e-09  Score=78.85  Aligned_cols=36  Identities=36%  Similarity=0.416  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ++||+|||||++|+++|+.|+++|++|+|+|+...+
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  299 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP  299 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence            479999999999999999999999999999997654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.91  E-value=1.3e-09  Score=77.82  Aligned_cols=37  Identities=41%  Similarity=0.490  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .++||+|||+|++||++|+.|++ |.+|+|+||.+..+
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~   43 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTE   43 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCC
Confidence            46899999999999999999999 99999999987653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.91  E-value=1.2e-09  Score=78.52  Aligned_cols=37  Identities=38%  Similarity=0.493  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~   67 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFA   67 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.91  E-value=1.3e-09  Score=72.47  Aligned_cols=37  Identities=30%  Similarity=0.270  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.+..+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   43 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLG   43 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC
Confidence            5799999999999999999999999999999987654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.90  E-value=1.6e-09  Score=72.06  Aligned_cols=34  Identities=41%  Similarity=0.641  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   48 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA   48 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            3589999999999999999999999999999985

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.90  E-value=1.3e-09  Score=79.59  Aligned_cols=40  Identities=33%  Similarity=0.474  Sum_probs=36.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      |.+.++||+|||+|++||++|+.|+++|.+|+|+|+....
T Consensus         1 M~~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             CCcccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            6666799999999999999999999999999999997654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.90  E-value=2.1e-09  Score=72.59  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ++||+|||||++|+++|+.|++.|++|+|+|+.+..+
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   50 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLG   50 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            5799999999999999999999999999999987653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.89  E-value=2.3e-09  Score=75.20  Aligned_cols=36  Identities=39%  Similarity=0.661  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            468999999999999999999999999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.89  E-value=1.2e-09  Score=73.00  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=31.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            358999999999999999999999999999998

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.88  E-value=1.2e-09  Score=78.96  Aligned_cols=40  Identities=35%  Similarity=0.488  Sum_probs=36.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~   40 (115)
                      |++.++||+|||+|++||++|+.|+++|  .+|+|+|+.+..
T Consensus         1 m~~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~   42 (602)
T 1kf6_A            1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (602)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             CCcccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            6677899999999999999999999999  999999997643

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.87  E-value=3.3e-09  Score=74.98  Aligned_cols=36  Identities=36%  Similarity=0.541  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~   38 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLA   38 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            579999999999999999999999999999997643

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.87  E-value=2.1e-09  Score=76.89  Aligned_cols=36  Identities=28%  Similarity=0.660  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~  141 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE  141 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCc
Confidence            357999999999999999999999999999999854

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.87  E-value=1.7e-09  Score=77.90  Aligned_cols=37  Identities=38%  Similarity=0.418  Sum_probs=34.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||+|++||++|+.|+++|.+|+|+||.+..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.87  E-value=2.8e-09  Score=77.77  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+||+|||||++|+++|+.|+++|++|+|+|+...+
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  307 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEAP  307 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            379999999999999999999999999999997544

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.87  E-value=3.4e-09  Score=72.75  Aligned_cols=38  Identities=26%  Similarity=0.547  Sum_probs=34.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   40 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   40 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCC
Confidence            36999999999999999999999999999999887654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.86  E-value=1.8e-09  Score=71.62  Aligned_cols=35  Identities=26%  Similarity=0.516  Sum_probs=32.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .+++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   37 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC
Confidence            45689999999999999999999999999999965

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.86  E-value=2.5e-09  Score=70.58  Aligned_cols=35  Identities=46%  Similarity=0.630  Sum_probs=32.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEE-EcCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLV-LEKS   37 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~v-iE~~   37 (115)
                      ..++||+|||||++|+++|+.|+++|++|+| +|+.
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~   37 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG   37 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            3458999999999999999999999999999 9983

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.85  E-value=1.3e-09  Score=76.67  Aligned_cols=39  Identities=36%  Similarity=0.589  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.+..++
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG   43 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGG   43 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence            468999999999999999999999999999999766543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.85  E-value=2.5e-09  Score=74.93  Aligned_cols=39  Identities=36%  Similarity=0.598  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.+..++
T Consensus         1 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG   39 (468)
T 2qae_A            1 NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGG   39 (468)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCC
Confidence            358999999999999999999999999999999876543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.84  E-value=4.1e-09  Score=73.90  Aligned_cols=37  Identities=27%  Similarity=0.447  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHH---CCCc---eEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKR---LGIK---PLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~---~g~~---v~viE~~~~~~   41 (115)
                      .+||+|||||++|+++|..|++   .|++   |+|+|+.+..+
T Consensus         2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G   44 (464)
T 2xve_A            2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG   44 (464)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC
T ss_pred             CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC
Confidence            4799999999999999999999   9999   99999987654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.84  E-value=4.6e-09  Score=74.92  Aligned_cols=38  Identities=34%  Similarity=0.568  Sum_probs=34.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+.+..+
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G   52 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG   52 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            35899999999999999999999999999999987653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.83  E-value=5e-09  Score=74.91  Aligned_cols=38  Identities=32%  Similarity=0.581  Sum_probs=34.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +++||+|||||++|+.+|+.|++.|++|+|+|+.+..+
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~G   45 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVG   45 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            45799999999999999999999999999999987654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.83  E-value=3.8e-09  Score=74.15  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            46899999999999999999999999999999763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.83  E-value=4.4e-09  Score=70.09  Aligned_cols=33  Identities=48%  Similarity=0.705  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   40 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG   40 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC
Confidence            579999999999999999999999999999998

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.82  E-value=5.2e-09  Score=64.39  Aligned_cols=35  Identities=43%  Similarity=0.684  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +|++|||||++|+.+|..|++.|.+|+|+|+.+..
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~   36 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSK   36 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCc
Confidence            79999999999999999999999999999987643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.82  E-value=3.7e-09  Score=74.32  Aligned_cols=34  Identities=32%  Similarity=0.520  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899999999999999999999999999999974

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.82  E-value=4e-09  Score=73.91  Aligned_cols=38  Identities=32%  Similarity=0.615  Sum_probs=33.0

Q ss_pred             CCCc-cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METV-EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~-~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |..| ++||+|||||++|+.+|..|++.|++|+|+|+.+
T Consensus         1 m~~m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            1 MTPMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             ---CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCcccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4444 4899999999999999999999999999999976

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.82  E-value=4.4e-09  Score=74.06  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=32.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ++++||+|||||++|+++|..|++.|++|+|+|+.
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            45799999999999999999999999999999973

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.82  E-value=5.1e-09  Score=73.26  Aligned_cols=40  Identities=45%  Similarity=0.669  Sum_probs=35.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .++||+|||||++|+++|..|++.|++|+|+|+.+..++.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~   44 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT   44 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccc
Confidence            4689999999999999999999999999999998766443

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.82  E-value=5e-09  Score=74.03  Aligned_cols=35  Identities=34%  Similarity=0.496  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |++||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus         1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46899999999999999999999999999999984

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.81  E-value=2.7e-09  Score=71.92  Aligned_cols=34  Identities=35%  Similarity=0.447  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC------CceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG------IKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g------~~v~viE~~~~   39 (115)
                      +||+|||||++|+++|+.|+++|      .+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            38999999999999999999998      99999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.81  E-value=6.4e-09  Score=72.92  Aligned_cols=38  Identities=37%  Similarity=0.483  Sum_probs=34.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..++|+||||||+|+++|+.|++.|++|+|||+.+..+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMG  158 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            35799999999999999999999999999999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.81  E-value=2.4e-09  Score=75.09  Aligned_cols=38  Identities=39%  Similarity=0.578  Sum_probs=34.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+.+..+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~G   41 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLG   41 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcC
Confidence            35899999999999999999999999999999976554

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.81  E-value=3.9e-09  Score=73.31  Aligned_cols=34  Identities=38%  Similarity=0.508  Sum_probs=31.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~   37 (115)
                      .++||+|||||++|+++|+.|+++| .+|+|+|+.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            3579999999999999999999999 999999993

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.81  E-value=4.8e-09  Score=74.92  Aligned_cols=38  Identities=34%  Similarity=0.600  Sum_probs=34.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHH-HCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALK-RLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~-~~g~~v~viE~~~~~~   41 (115)
                      +++||+|||||++|+.+|+.|+ +.|++|+|+|+.+..+
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~G   45 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPG   45 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCC
Confidence            3579999999999999999999 9999999999987654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.81  E-value=5.7e-09  Score=74.68  Aligned_cols=38  Identities=34%  Similarity=0.581  Sum_probs=34.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .++||+|||||++|+.+|+.|++.|++|+|+|+.+..+
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G   57 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVG   57 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            45799999999999999999999999999999977654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.80  E-value=7.7e-09  Score=72.88  Aligned_cols=41  Identities=29%  Similarity=0.399  Sum_probs=36.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      .++||+|||+|++|+++|+.|+++|.+|+++|+++..++..
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~   59 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGET   59 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            35899999999999999999999999999999998776543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.80  E-value=5.7e-09  Score=70.49  Aligned_cols=34  Identities=47%  Similarity=0.790  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ++||+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            5799999999999999999999999 999999886

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.80  E-value=4.8e-09  Score=73.58  Aligned_cols=40  Identities=35%  Similarity=0.694  Sum_probs=35.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .+++||+|||||++|+++|..|++.|++|+|+|+.+..++
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG   43 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG   43 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCC
Confidence            3568999999999999999999999999999999876543

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.79  E-value=5.7e-09  Score=76.17  Aligned_cols=37  Identities=22%  Similarity=0.357  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC------CCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL------GIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~------g~~v~viE~~~~~   40 (115)
                      .++||+|||+|++||++|+.|++.      |.+|+|+||....
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            468999999999999999999997      9999999997643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.79  E-value=8.2e-09  Score=73.34  Aligned_cols=39  Identities=31%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+.+..++
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG   80 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG   80 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            358999999999999999999999999999999875543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.78  E-value=5.5e-09  Score=69.99  Aligned_cols=34  Identities=41%  Similarity=0.664  Sum_probs=31.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   46 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT   46 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4589999999999999999999999999999975

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.78  E-value=4.7e-09  Score=76.12  Aligned_cols=37  Identities=35%  Similarity=0.431  Sum_probs=33.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++||+|||+|++||++|+.|+++|.+|+|+|+....
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~   53 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPT   53 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            4579999999999999999999999999999997653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.78  E-value=8.6e-09  Score=73.20  Aligned_cols=34  Identities=38%  Similarity=0.578  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++||+||||||+|+.+|+.|++.|++|+|+|+.+
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            5899999999999999999999999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.78  E-value=5.1e-09  Score=72.98  Aligned_cols=37  Identities=30%  Similarity=0.485  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-----CceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-----IKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-----~~v~viE~~~~~~   41 (115)
                      .+||+|||||++|+++|..|++.|     ++|+|+|+.+..+
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence            469999999999999999999999     9999999988643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.78  E-value=5.6e-09  Score=72.87  Aligned_cols=38  Identities=39%  Similarity=0.610  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ++||+|||||++|+++|..|++.|++|+|+|+.+..++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG   38 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGG   38 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            37999999999999999999999999999999865543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.77  E-value=8.5e-09  Score=68.21  Aligned_cols=33  Identities=39%  Similarity=0.592  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +||+|||||++|+++|+.|++.|+ +|+|+|+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~   35 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM   35 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC
Confidence            799999999999999999999999 999999853

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.77  E-value=8.9e-09  Score=72.14  Aligned_cols=35  Identities=29%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            45899999999999999999999999999999973

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.76  E-value=7.6e-09  Score=72.22  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            46899999999999999999999999999999973

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.76  E-value=9.6e-09  Score=74.50  Aligned_cols=35  Identities=43%  Similarity=0.598  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++||+|||||++|+.+|+.|++.|.+|+|+|++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            35899999999999999999999999999999874

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.76  E-value=9.3e-09  Score=75.26  Aligned_cols=39  Identities=33%  Similarity=0.505  Sum_probs=35.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG  428 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG  428 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            357999999999999999999999999999999876644

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.75  E-value=8.3e-09  Score=71.99  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~   41 (115)
                      ++||+|||||++|+++|..|++.  |++|+|+|+.+..+
T Consensus         2 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            2 SLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            36999999999999999999998  89999999988654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.75  E-value=1.1e-08  Score=71.71  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4589999999999999999999999999999987

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.75  E-value=1.2e-08  Score=71.82  Aligned_cols=33  Identities=33%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      .++||+|||||++|+++|+.|++.|++|+|+|+
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            468999999999999999999999999999995

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.75  E-value=8.5e-09  Score=72.13  Aligned_cols=33  Identities=33%  Similarity=0.621  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            479999999999999999999999999999997

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.75  E-value=1e-08  Score=74.56  Aligned_cols=34  Identities=41%  Similarity=0.612  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++||+|||||++|+.+|+.|++.|.+|+|+|++.
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            5899999999999999999999999999999874

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.75  E-value=1.7e-08  Score=70.69  Aligned_cols=41  Identities=39%  Similarity=0.702  Sum_probs=34.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCCCCc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGLRGT   43 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~~~~   43 (115)
                      +.++||+|||+|++|+++|+.|++.|+ +|+|+|+.+.+++.
T Consensus         2 ~~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~   43 (472)
T 1b37_A            2 TVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR   43 (472)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCc
Confidence            346899999999999999999999998 89999998876543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.74  E-value=1e-08  Score=74.41  Aligned_cols=35  Identities=37%  Similarity=0.527  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++||+|||||++|+.+|+.|++.|.+|+|+|+..
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            46899999999999999999999999999999874

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.73  E-value=6.9e-09  Score=73.26  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC---CCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL---GIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~---g~~v~viE~~~   38 (115)
                      |++||+|||||++|+++|+.|++.   |++|+|+|+.+
T Consensus         1 M~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            358999999999999999999999   99999999986

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.73  E-value=1.4e-08  Score=73.70  Aligned_cols=38  Identities=32%  Similarity=0.387  Sum_probs=35.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg   83 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG   83 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCC
Confidence            58999999999999999999999999999999877653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.72  E-value=1.4e-08  Score=70.89  Aligned_cols=34  Identities=32%  Similarity=0.625  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      +++||+|||||++|+++|..|++.|++|+|+|+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4589999999999999999999999999999997

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.72  E-value=2.3e-08  Score=69.10  Aligned_cols=34  Identities=35%  Similarity=0.552  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +||+|||||++|+.+|+.|++.|++|+|+|+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            6999999999999999999999999999998763

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.71  E-value=1.4e-08  Score=67.06  Aligned_cols=33  Identities=36%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ++||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~   33 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            479999999999999999999999999999864

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.71  E-value=1.6e-08  Score=75.29  Aligned_cols=36  Identities=36%  Similarity=0.398  Sum_probs=33.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .++||+|||||++|+++|+.|+++|+ +|+|+|+...
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            35899999999999999999999998 9999999875

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.71  E-value=2.2e-08  Score=73.81  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ++||+|||||++|+.+|..|++.|++|+|+|+.+..++
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG  426 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG  426 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCC
Confidence            57999999999999999999999999999999877644

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.70  E-value=1.9e-08  Score=73.19  Aligned_cols=36  Identities=36%  Similarity=0.586  Sum_probs=32.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHH---H-CCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALK---R-LGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~---~-~g~~v~viE~~~~   39 (115)
                      .++||+|||||++||++|+.|+   + +|.+|+|+||...
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            4589999999999999999999   6 8999999999874

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.69  E-value=2.6e-08  Score=70.06  Aligned_cols=31  Identities=45%  Similarity=0.724  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ||+|||+|++|+++|+.|++.|.+|+|+|+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            7999999999999999999999999999998

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.69  E-value=1.7e-08  Score=71.22  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH-CCCceEEEc
Q 047339            4 VEKDVVIIGAGIAGLATALALKR-LGIKPLVLE   35 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE   35 (115)
                      .++||+|||||++|+++|+.|++ .|++|+|+|
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            35899999999999999999999 999999999

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.68  E-value=2.6e-08  Score=69.25  Aligned_cols=38  Identities=26%  Similarity=0.519  Sum_probs=33.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~~   40 (115)
                      ++++||+|||||++|+.+|..|++.|.  +|+|+|+.+..
T Consensus         2 ~~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~   41 (431)
T 1q1r_A            2 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI   41 (431)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSC
T ss_pred             CCCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCC
Confidence            356899999999999999999999998  79999987653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.68  E-value=2.1e-08  Score=70.18  Aligned_cols=34  Identities=29%  Similarity=0.602  Sum_probs=32.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .++|++|||||++|+.+|..|++.|++|+|+|+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            4689999999999999999999999999999993

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.68  E-value=2.8e-08  Score=68.56  Aligned_cols=37  Identities=38%  Similarity=0.629  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCc--eEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIK--PLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~--v~viE~~~~~   40 (115)
                      +++||+|||||++|+++|..|++.|++  |+|+|+.+..
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC
Confidence            468999999999999999999999987  9999997754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.67  E-value=1.3e-08  Score=71.89  Aligned_cols=31  Identities=32%  Similarity=0.528  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-CCCceEEEc
Q 047339            5 EKDVVIIGAGIAGLATALALKR-LGIKPLVLE   35 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE   35 (115)
                      ++||+|||||++|+++|+.|++ .|++|+|+|
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            5899999999999999999999 999999999

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.67  E-value=2.8e-08  Score=71.35  Aligned_cols=38  Identities=45%  Similarity=0.553  Sum_probs=34.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+.+..+
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~  162 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG  162 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            35799999999999999999999999999999988664

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.66  E-value=1.7e-08  Score=70.12  Aligned_cols=38  Identities=32%  Similarity=0.503  Sum_probs=34.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~   39 (115)
                      |+.| ++|+|||||++|+++|..|++   .|++|+|+|+.+.
T Consensus         1 M~~m-~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            1 MRGS-AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             CTTS-CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CCCC-CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            6555 799999999999999999999   8999999998875

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.66  E-value=3.3e-08  Score=70.51  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|++|||+|++|+++|..|++.|.+|+|+|+....
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4689999999999999999999999999999998653

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.66  E-value=2.7e-08  Score=71.14  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+||++|||+||+|+.+|..+++.|.+|.|+|+..
T Consensus        41 ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           41 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            36899999999999999999999999999999754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.66  E-value=3.8e-08  Score=71.80  Aligned_cols=38  Identities=39%  Similarity=0.698  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++|+|||+|++|+++|+.|++.|++|+|+|+.+.+++
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            47999999999999999999999999999999887654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.65  E-value=3.5e-08  Score=72.03  Aligned_cols=38  Identities=29%  Similarity=0.511  Sum_probs=34.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ++||+|||||++|+.+|..|++.|++|+|+|+.+..++
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg  410 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG  410 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence            57999999999999999999999999999999876543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.65  E-value=3.8e-08  Score=67.89  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~~   40 (115)
                      +++||+|||||++|+++|..|++.|.  +|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            46899999999999999999999998  59999998754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.64  E-value=2.5e-08  Score=70.61  Aligned_cols=36  Identities=31%  Similarity=0.436  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~   39 (115)
                      .++|+||||+|++|+.+|..|++ .+++|+|+|+...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            46899999999999999999998 6799999998754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.64  E-value=1.8e-08  Score=70.59  Aligned_cols=36  Identities=31%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      ++||+|||||++|+++|..|++.  |++|+|+|+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46999999999999999999998  8999999998774

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.64  E-value=3.3e-08  Score=68.88  Aligned_cols=37  Identities=41%  Similarity=0.540  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~   41 (115)
                      ++||+|||||++|+++|..|++.  +++|+|+|+.+...
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~   41 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVS   41 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccc
Confidence            37999999999999999999998  78999999988653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.64  E-value=3.2e-08  Score=71.09  Aligned_cols=37  Identities=22%  Similarity=0.426  Sum_probs=33.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      ++++|+|||||++|+++|..|++.  |++|+|+|+.+..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            457999999999999999999998  8999999998875

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.63  E-value=6e-08  Score=72.59  Aligned_cols=38  Identities=39%  Similarity=0.698  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++|+|||+|++||++|+.|+++|++|+|+|+.+.+++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            47999999999999999999999999999999887654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.63  E-value=4.6e-08  Score=67.52  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCc--eEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIK--PLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~--v~viE~~~~~   40 (115)
                      +++|+|||||++|+++|..|++.|++  |+|+|+.+..
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL   39 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC
Confidence            46899999999999999999999987  9999988764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.62  E-value=1.7e-08  Score=71.30  Aligned_cols=38  Identities=39%  Similarity=0.599  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .++||+|||||++|+++|+.|++. ++|+|+|+.+..++
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG  144 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGG  144 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSC
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCC
Confidence            357999999999999999999999 99999999876643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.62  E-value=4.4e-08  Score=66.96  Aligned_cols=36  Identities=33%  Similarity=0.554  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~   39 (115)
                      .++||+|||||++|+++|..|++.|  .+|+++|++..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g   40 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDG   40 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            3589999999999999999999998  56899998753

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.62  E-value=3e-08  Score=69.91  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC---CceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG---IKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~~~   40 (115)
                      |++||+|||||++|+.+|..|++.|   .+|+|+|+.+..
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            4589999999999999999999988   999999998754

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.61  E-value=5e-08  Score=72.38  Aligned_cols=38  Identities=55%  Similarity=0.776  Sum_probs=34.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.+..++
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            47999999999999999999999999999999876654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.61  E-value=4.4e-08  Score=70.55  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=31.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .++||+||||||+|+++|..|++.|++|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            4689999999999999999999999999999973

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.61  E-value=5.2e-08  Score=69.27  Aligned_cols=34  Identities=35%  Similarity=0.495  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .++||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~  244 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER  244 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            3689999999999999999999999999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.60  E-value=6e-08  Score=66.74  Aligned_cols=36  Identities=28%  Similarity=0.489  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~~   40 (115)
                      +++|+|||||++|+++|..|++.|+  +|+|+|+.+..
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            3689999999999999999999998  89999998753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.60  E-value=4.1e-08  Score=67.56  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~   39 (115)
                      ++|+|||||++|+++|..|++   .|++|+|+|+++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            589999999999999999999   8999999998874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.59  E-value=6.9e-08  Score=73.49  Aligned_cols=38  Identities=32%  Similarity=0.521  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~~~   42 (115)
                      .+||+||||||+|+++|..|++.|+ +|+|||+.+..++
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG  225 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG  225 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCST
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCc
Confidence            4699999999999999999999999 7999999876543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.57  E-value=4.9e-08  Score=68.41  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-C------CCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKR-L------GIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~-~------g~~v~viE~~~~~~   41 (115)
                      +++|+|||||++|+.+|..|++ .      |++|+|+|+.+.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g   46 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   46 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC
Confidence            5799999999999999999999 7      99999999987654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.57  E-value=6.4e-08  Score=73.26  Aligned_cols=38  Identities=37%  Similarity=0.611  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ++||+|||+||+|+.+|..|++.|++|+|+|+.+.+++
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG  165 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGG  165 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCc
Confidence            57999999999999999999999999999999876653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.55  E-value=7.1e-08  Score=67.25  Aligned_cols=35  Identities=17%  Similarity=0.185  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            4899999999999999999998  9999999998754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.54  E-value=9.4e-08  Score=67.07  Aligned_cols=38  Identities=24%  Similarity=0.209  Sum_probs=34.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~   41 (115)
                      .+++|+|||+|++|+.+|..|++.|  ++|+|+|+.+.+.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence            4689999999999999999999988  9999999987764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.53  E-value=8.6e-08  Score=66.56  Aligned_cols=36  Identities=36%  Similarity=0.582  Sum_probs=31.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~   39 (115)
                      |.++|+|||||++|+++|..|++.+  ++|+|+|+++.
T Consensus         1 M~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             CCCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            4468999999999999999999865  89999998764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.53  E-value=8.7e-08  Score=69.02  Aligned_cols=36  Identities=33%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~   39 (115)
                      ..+|+||||||.+||++|..|++.+ .+|+|+|+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4699999999999999999999987 79999999765

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.53  E-value=4.6e-08  Score=69.81  Aligned_cols=35  Identities=37%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|+||||+|++|+++|..|++ |.+|+|+|+...
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            35899999999999999999999 999999999865

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.51  E-value=1e-07  Score=66.36  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      +||+|||||++|+.+|..|++.  |.+|+|+|+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            3899999999999999999998  9999999998764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=98.49  E-value=3.6e-07  Score=66.53  Aligned_cols=57  Identities=25%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG   61 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g   61 (115)
                      +++|++|||+|+.|+.+|..|++.|.+|+++|+++..++......+ ....+|+++..
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l-~~l~~w~~~~~   63 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSF-SGLLSWLKEYQ   63 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH-HHHHHHHHHTC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccH-HHHHHHHHHhh
Confidence            4799999999999999999999999999999999998877766664 35677777765

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.49  E-value=1.4e-07  Score=66.40  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            6999999999999999999996  8999999998765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.48  E-value=1.4e-07  Score=67.27  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLR   41 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~   41 (115)
                      ++|+|||||++|+++|..|++.  +++|+|+|+.+...
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            5899999999999999999998  89999999987753

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.48  E-value=1.3e-07  Score=64.45  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      -|++|||||++|+.+|..|++.| +|+|+|+.+..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            58999999999999999999999 99999988753

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.48  E-value=1.6e-07  Score=67.13  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=35.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~   40 (115)
                      |+.+.+|++|||+|++|+.+|..|++. |.+|+|+|+....
T Consensus         9 ~~~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A            9 LSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CCCCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             cccCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            344679999999999999999999998 8999999987543

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.47  E-value=1.5e-07  Score=67.82  Aligned_cols=35  Identities=37%  Similarity=0.539  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~   38 (115)
                      ..+|+||||||.+||++|..|++. +.+|+|+|+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            468999999999999999999974 89999999987

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.47  E-value=2.1e-07  Score=67.13  Aligned_cols=38  Identities=37%  Similarity=0.410  Sum_probs=34.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~~   40 (115)
                      ..++|++|||+|++|+++|..|++ .|.+|+|+|+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            356899999999999999999999 89999999987643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.45  E-value=2e-07  Score=65.81  Aligned_cols=36  Identities=25%  Similarity=0.480  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      ++||+|||||++|+.+|..|++.  +.+|+|+|+.+..
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            57999999999999999999887  8999999998654

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.45  E-value=1.3e-07  Score=69.65  Aligned_cols=36  Identities=28%  Similarity=0.511  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC--------CceEEEcCCC-CC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG--------IKPLVLEKSD-GL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g--------~~v~viE~~~-~~   40 (115)
                      +++|+|||||++||++|+.|++.|        ++|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            468999999999999999999998        9999999987 55

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.42  E-value=3.1e-07  Score=63.04  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|+|||||++|+.+|..|...+.+|+|+|+.+..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            3579999999999999999998889999999998765

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.41  E-value=2.5e-07  Score=63.39  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~   39 (115)
                      ++|+|||||++|+++|..|++.+  .+|+|+|+++.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            57999999999999999998866  68999998764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.40  E-value=4.1e-07  Score=64.45  Aligned_cols=38  Identities=29%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..++|++|||+|++|+++|..|++.|.+|+|+|+....
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   40 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   40 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            34689999999999999999999999999999988643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.39  E-value=2.2e-07  Score=65.85  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+++|+|||||++|+.+|..|++.+++|+|+|+++.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            356899999999999999999999999999998763

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.38  E-value=1.5e-07  Score=67.67  Aligned_cols=36  Identities=36%  Similarity=0.411  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~~   40 (115)
                      .+|+||||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999999 78999999987543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.38  E-value=2.9e-07  Score=64.10  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~   40 (115)
                      ++|+|||||++|+++|..|++.|  .+|+|+|+.+..
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            47999999999999999999988  579999987754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.35  E-value=6.1e-07  Score=63.63  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|++|||+|++|+.+|..|++.|.+|+|+|+...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            468999999999999999999999999999998764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.13  E-value=2.9e-06  Score=59.06  Aligned_cols=38  Identities=32%  Similarity=0.435  Sum_probs=34.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ...+++|||+|++|+.+|..|++.|.+|+++|+.+.+.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l  185 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL  185 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccc
Confidence            35789999999999999999999999999999987653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.11  E-value=3.6e-06  Score=57.77  Aligned_cols=58  Identities=22%  Similarity=0.137  Sum_probs=41.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV   62 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~   62 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+.+......-.......+.+++.|+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV  203 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGI  203 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCC
Confidence            3689999999999999999999999999999987754332111122223344555554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.03  E-value=8.9e-06  Score=48.14  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=33.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++.+++|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            3567899999999999999999999999999998764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.00  E-value=1.1e-05  Score=56.51  Aligned_cols=58  Identities=29%  Similarity=0.346  Sum_probs=42.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||+.|+.+|..|++.|.+|+++|+.+.+.+ ...-.+.....+.+++.|+.
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~  240 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGLD  240 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHHHHHHTTCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCCE
Confidence            46899999999999999999999999999999876533 11111222334556666654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=8.6e-06  Score=56.95  Aligned_cols=58  Identities=24%  Similarity=0.441  Sum_probs=41.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||++|+.+|..|++.|.+|+|+|+.+...+. ..-.+.....+.+++.|+.
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~  228 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIA  228 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCE
Confidence            468999999999999999999999999999998775321 1111122234455555654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.99  E-value=1e-05  Score=55.81  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=42.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+.+......-.+.....+.+++.|+.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~  203 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVD  203 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcE
Confidence            46899999999999999999999999999999876533221111222344556666653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.98  E-value=1.5e-06  Score=61.51  Aligned_cols=36  Identities=33%  Similarity=0.360  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--------------ceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--------------KPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--------------~v~viE~~~~~   40 (115)
                      -+||+|||+||+||++|..|.+.|.              ....+|+.+..
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f   88 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQF   88 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSC
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCC
Confidence            3799999999999999999987543              46677876643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.98  E-value=9.1e-06  Score=55.46  Aligned_cols=59  Identities=24%  Similarity=0.262  Sum_probs=41.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+.+........+.....+.++..|+.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~  203 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVR  203 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCE
Confidence            56899999999999999999999999999998876533211111222334455555543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.98  E-value=1.3e-05  Score=55.92  Aligned_cols=58  Identities=26%  Similarity=0.337  Sum_probs=41.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+|+|+.+.+.+. ....+.....+.+++.|+.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~  227 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVE  227 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCE
Confidence            578999999999999999999999999999988765321 1111222234456666654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.96  E-value=1.1e-05  Score=56.46  Aligned_cols=58  Identities=24%  Similarity=0.337  Sum_probs=41.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||||+.|+.+|..|++.|.+|+|+|+.+..... ..-.+.....+.+++.|+.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~  226 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIR  226 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhcCCE
Confidence            468999999999999999999999999999998765321 1111122234455666654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.96  E-value=8.4e-06  Score=55.52  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .+++|||||+.|+.+|..|++.|.+|+++|+.+.+.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  179 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL  179 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec
Confidence            689999999999999999999999999999987654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.95  E-value=1.5e-05  Score=55.59  Aligned_cols=36  Identities=33%  Similarity=0.665  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|++|+.+|..|++.|.+|+++|+.+..
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            468999999999999999999999999999988764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.93  E-value=1.9e-05  Score=55.33  Aligned_cols=59  Identities=25%  Similarity=0.406  Sum_probs=42.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||+|+.|+.+|..|++.|.+|+++|+.+........-.+.....+.+++.|+.
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~  236 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFK  236 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCE
Confidence            46899999999999999999999999999999876533121111222344556666654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.92  E-value=1.5e-05  Score=56.14  Aligned_cols=59  Identities=20%  Similarity=0.272  Sum_probs=42.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+........-.+.....+.+++.|+.
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~  252 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQ  252 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeE
Confidence            56899999999999999999999999999999876533221111222334455555653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.91  E-value=1.8e-05  Score=47.47  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|..|..+|..|.+.|++|+++++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46899999999999999999999999999998654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.89  E-value=1.9e-05  Score=46.54  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+++|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            5799999999999999999999999999998653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.85  E-value=2.3e-05  Score=54.38  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=41.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+.+......-.+.....+.+++.|+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~  207 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD  207 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeE
Confidence            46899999999999999999999999999998876533221111222234455555653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.84  E-value=2.5e-05  Score=51.61  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            58999999999999999999999999999988765

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.82  E-value=3.1e-05  Score=54.00  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+.+
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP  202 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch
Confidence            568999999999999999999999999999988764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.82  E-value=2.9e-05  Score=44.00  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSD   38 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~   38 (115)
                      .+..+|+|+|+|..|..++..|.+.| ++|.++++++
T Consensus         3 ~~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TTCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            45568999999999999999999999 8999998864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.82  E-value=4.7e-05  Score=45.53  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.+++|+|+|..|..++..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4589999999999999999999999999999863

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.82  E-value=3.3e-05  Score=53.97  Aligned_cols=58  Identities=22%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+.+.+. ..-.+.....+.+++.|+.
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~  228 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQFKKLGVT  228 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHcCCE
Confidence            468999999999999999999999999999998765321 1111222234556666653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.82  E-value=2.7e-05  Score=54.22  Aligned_cols=59  Identities=20%  Similarity=0.196  Sum_probs=42.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|..|+.+|..|++.|.+|+++|+.+........-.+.....+.+++.|+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~  207 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVN  207 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCE
Confidence            46899999999999999999999999999998876533222212223344556666654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.81  E-value=3.5e-05  Score=45.12  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+++|+|+|..|..++..|.+.|++|.++++++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999998754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.81  E-value=2.9e-05  Score=51.98  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++|+|||+|..|..+|..|++.|++|+++++++
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            4689999999999999999999999999998864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.78  E-value=3.7e-05  Score=51.89  Aligned_cols=39  Identities=18%  Similarity=0.306  Sum_probs=33.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      |.+.+.+|+|||+|..|..+|..|+..|+ +|.++|.++.
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            44455689999999999999999999998 9999998753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.78  E-value=2.5e-05  Score=54.63  Aligned_cols=58  Identities=26%  Similarity=0.353  Sum_probs=41.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+..... ..-.+.....+.+++.|+.
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gv~  234 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMK  234 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHHHHHHHcCCE
Confidence            568999999999999999999999999999998765321 1111222234556666654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.76  E-value=4.4e-05  Score=44.50  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.74  E-value=5.6e-05  Score=52.92  Aligned_cols=36  Identities=39%  Similarity=0.513  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL  201 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            468999999999999999999999999999988764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.74  E-value=4.7e-05  Score=51.86  Aligned_cols=38  Identities=37%  Similarity=0.460  Sum_probs=32.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |++++++|.|||+|..|..+|..|++.|++|.++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            44445789999999999999999999999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.74  E-value=5e-05  Score=54.42  Aligned_cols=60  Identities=25%  Similarity=0.255  Sum_probs=42.8

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +..+.+++|||||..|+-+|..+++.|.+|+|+++.......  --.+.....+.|++.|+.
T Consensus       220 ~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~--D~ei~~~l~~~l~~~gi~  279 (542)
T 4b1b_A          220 KKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGF--DQQCAVKVKLYMEEQGVM  279 (542)
T ss_dssp             SSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTS--CHHHHHHHHHHHHHTTCE
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccccc--chhHHHHHHHHHHhhcce
Confidence            345688999999999999999999999999999875443211  111223345566666653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.74  E-value=6e-05  Score=52.71  Aligned_cols=57  Identities=25%  Similarity=0.313  Sum_probs=42.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+....  ..-.+.....+.+++.|+.
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~Gv~  232 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFRAEGIE  232 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHHhCCCE
Confidence            46899999999999999999999999999998876533  1112223344556666654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.72  E-value=3.7e-05  Score=51.28  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++|.|||+|..|..+|..|++.|++|+++++++
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            4689999999999999999999999999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.72  E-value=2.7e-05  Score=53.64  Aligned_cols=36  Identities=31%  Similarity=0.613  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            468999999999999999999999999999988765

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.71  E-value=5.6e-05  Score=52.06  Aligned_cols=59  Identities=27%  Similarity=0.345  Sum_probs=42.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+......-.+.....+.+++.|+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~  210 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVD  210 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCE
Confidence            46799999999999999999999999999999877543322222223334555666654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.71  E-value=6.9e-05  Score=52.16  Aligned_cols=58  Identities=21%  Similarity=0.347  Sum_probs=43.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||+.|+.+|..+++.|.+|+|+|+.+..... ..-.+.....+.+++.|+.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~  204 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIP  204 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCC
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceE
Confidence            457999999999999999999999999999998765322 1222334456677777764

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.71  E-value=2.8e-05  Score=54.65  Aligned_cols=38  Identities=37%  Similarity=0.537  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ...+++|||+|+.|+.+|..|++.|.+|+++|+.+...
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  222 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIG  222 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchh
Confidence            35789999999999999999999999999999876643

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.70  E-value=5.8e-05  Score=51.86  Aligned_cols=59  Identities=24%  Similarity=0.291  Sum_probs=42.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+........-.+.....+.+++.|+.
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~  200 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIR  200 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcE
Confidence            35799999999999999999999999999998876543322222223334455666654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.69  E-value=4.8e-05  Score=50.34  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++|+|||+|..|..+|..|++.|++|+++++++
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            4689999999999999999999999999999874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.68  E-value=5.2e-05  Score=49.90  Aligned_cols=36  Identities=31%  Similarity=0.601  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|..|+.+|..|++.|.+|+|+++....
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            357999999999999999999999999999986553

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.68  E-value=7.4e-05  Score=52.50  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ...+++|||+|+.|+.+|..|++.|.+|+++|+.+.+... ..-.+.....+.|++.|+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~Gv~  242 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNTITDHYVKEGIN  242 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHHHHHHHHhCCeE
Confidence            3468999999999999999999999999999998765321 1111222234456666654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.66  E-value=6.2e-05  Score=53.19  Aligned_cols=58  Identities=16%  Similarity=0.252  Sum_probs=42.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+.+... ..-.+.....+.|++.|+.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gv~  233 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNIN  233 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhHHHHHHHHHhCCCE
Confidence            468999999999999999999999999999998765321 1111222344566666654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.66  E-value=7.8e-05  Score=49.42  Aligned_cols=33  Identities=24%  Similarity=0.497  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..|++.|++|+++++++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            569999999999999999999999999999764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.65  E-value=3.8e-05  Score=50.92  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHC-----C-CceEEEcC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRL-----G-IKPLVLEK   36 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~-----g-~~v~viE~   36 (115)
                      |++++++|.|||+|..|..+|..|++.     | ++|+++++
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            566667899999999999999999998     9 99999987

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.63  E-value=0.0001  Score=51.71  Aligned_cols=59  Identities=25%  Similarity=0.295  Sum_probs=42.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ...+++|||+|..|+.+|..|++.|.+|+++++.+.... ...-.+.....+.|++.|+.
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~~~~~l~~~gv~  244 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-SFDSMISTNCTEELENAGVE  244 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCE
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCCE
Confidence            356899999999999999999999999999998776432 11111222344566666654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.63  E-value=0.00011  Score=51.47  Aligned_cols=58  Identities=26%  Similarity=0.275  Sum_probs=41.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHH-HHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLAL-DALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l-~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+..... ..-.+.....+.+ ++.|+.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~~gv~  232 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAKNEKMK  232 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHHhhcCCcE
Confidence            468999999999999999999999999999998765321 1111122234456 666654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.62  E-value=8.4e-05  Score=53.04  Aligned_cols=58  Identities=29%  Similarity=0.403  Sum_probs=41.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|..|+.+|..|++.|.+|+++++.+.... ...-.+.....+.+++.|+.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~  208 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVD  208 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCE
Confidence            35899999999999999999999999999998876432 11111222234456666653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.60  E-value=7.5e-05  Score=52.05  Aligned_cols=58  Identities=21%  Similarity=0.225  Sum_probs=41.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV   62 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~   62 (115)
                      ..+++|||+|..|+.+|..|++.|.+|+++++.+........-.+.....+.+++.|+
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV  204 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAV  204 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCC
Confidence            4679999999999999999999999999999887653322111222234445555554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.60  E-value=0.00011  Score=45.06  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|..|..+|..|.+. |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            35899999999999999999999 999999998653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.59  E-value=0.00011  Score=49.47  Aligned_cols=32  Identities=28%  Similarity=0.323  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ++|.|||+|..|..+|..|++.|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            48999999999999999999999999999974

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.57  E-value=0.00011  Score=51.69  Aligned_cols=37  Identities=38%  Similarity=0.554  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l  221 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM  221 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc
Confidence            5689999999999999999999999999999987653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.56  E-value=0.00014  Score=47.88  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..+++.|++|+++++++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999997753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.56  E-value=7.5e-05  Score=47.19  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            799999999999999999999999999997653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.56  E-value=0.00017  Score=50.84  Aligned_cols=38  Identities=34%  Similarity=0.586  Sum_probs=34.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ...+++|||+|+.|+.+|..|++.|.+|+++++.+...
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  210 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA  210 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc
Confidence            35789999999999999999999999999999987753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.54  E-value=0.00018  Score=50.73  Aligned_cols=58  Identities=19%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..+++.|.+|+++|+.+..... ..-.+.....+.+++.|+.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~  239 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALVLEESFAERGVR  239 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCE
Confidence            468999999999999999999999999999988765321 1111222334556666654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.54  E-value=0.00014  Score=50.87  Aligned_cols=59  Identities=31%  Similarity=0.366  Sum_probs=41.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ...+++|||+|+.|+.+|..|++.|.+|+++++.+..... ..-.+.....+.++..|+.
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~  237 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLK  237 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHHHHHHHHHhCCCE
Confidence            3568999999999999999999999999999998765321 1111222234455665643

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.53  E-value=0.00012  Score=51.36  Aligned_cols=33  Identities=24%  Similarity=0.526  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|.|||+|..|+.+|..|++.|++|+++++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            589999999999999999999999999999865

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.52  E-value=0.00012  Score=48.68  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++|+|||+|..|..+|..|+ .|++|+++.+++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            468999999999999999999 999999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.51  E-value=0.00021  Score=51.53  Aligned_cols=33  Identities=30%  Similarity=0.329  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..+++|||||..|+.+|..|++.|.+|+++++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            457999999999999999999999999999987

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.51  E-value=0.00016  Score=50.93  Aligned_cols=58  Identities=26%  Similarity=0.371  Sum_probs=41.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++|+.+..... ..-.+.....+.+++.|+.
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~  255 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRMLTKQGID  255 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHHHHhCCCE
Confidence            568999999999999999999999999999988765321 1111222234455555653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.51  E-value=0.00014  Score=48.83  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+++|.|||+|..|..+|..|++.|++|+++++.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            57899999999999999999999999999998753

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.50  E-value=0.00014  Score=48.00  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|.|||+|..|..+|..|++.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.48  E-value=0.00024  Score=49.99  Aligned_cols=58  Identities=21%  Similarity=0.282  Sum_probs=40.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+.+++|||+|..|+.+|..|++.|.+|+++++.....  ...-.+.....+.|++.|+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~--~~d~~~~~~l~~~l~~~gv~  241 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR--GFDQQMSSLVTEHMESHGTQ  241 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--TSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc--cCCHHHHHHHHHHHHHCCCE
Confidence            35689999999999999999999999999999864321  11111222334556666654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.48  E-value=0.00017  Score=48.19  Aligned_cols=35  Identities=17%  Similarity=0.442  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ..+|.|||+|..|..+|..|++.|+ +|.++|.++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            4689999999999999999999998 9999998653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.48  E-value=0.00017  Score=48.09  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      .++|+|||+|..|..+|..|++.|+  +|+++++++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  999998763

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.48  E-value=0.00015  Score=50.74  Aligned_cols=59  Identities=25%  Similarity=0.347  Sum_probs=42.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++. |.+|+++++.+........-.+.....+.+++.|+.
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~  218 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVV  218 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCE
Confidence            46899999999999999999999 999999998876533121112222334456666653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.47  E-value=0.00018  Score=51.75  Aligned_cols=58  Identities=17%  Similarity=0.296  Sum_probs=41.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|..|+.+|..|++.|.+|+++++.+..... ....+.....+.+++.|+.
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~  244 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVE  244 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCE
Confidence            468999999999999999999999999999987764322 1111222334556666653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.47  E-value=0.00025  Score=50.39  Aligned_cols=58  Identities=22%  Similarity=0.292  Sum_probs=40.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+.+++|||+|..|+.+|..|++.|.+|+++++.....  ...-.+.....+.|++.|+.
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~--~~d~~~~~~~~~~l~~~GV~  266 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--GFDQDMANKIGEHMEEHGIK  266 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--TSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc--cCCHHHHHHHHHHHHHCCCE
Confidence            35679999999999999999999999999999853221  11111222234456666654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.47  E-value=0.00018  Score=47.77  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +..+|.|||.|..|..+|..|++.|++|+++++++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            45689999999999999999999999999999765

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.47  E-value=4.9e-05  Score=53.48  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|+|+|+|-.|..+|..|...|++|+++|+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            45899999999999999999999999999998764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.46  E-value=0.00019  Score=48.14  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=30.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      .+.+|+|||+|.+|+++|..|+..+.  ++.++|.++
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            45799999999999999999999987  899999764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.45  E-value=0.00021  Score=50.51  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=41.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC---CCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRL---GIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~---g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|..|+.+|..|++.   |.+|+++|+.+.+... ..-.+.....+.|++.|+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~  251 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FDETIREEVTKQLTANGIE  251 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhCCCE
Confidence            46899999999999999999999   9999999998765321 1111122234556666653

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.45  E-value=0.00021  Score=47.91  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=32.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      |+....+|.|||+|..|..+|..|+..|+ ++.++|.+
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            43345689999999999999999999999 99999986

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.45  E-value=8.8e-05  Score=49.68  Aligned_cols=36  Identities=17%  Similarity=0.117  Sum_probs=32.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSD   38 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~   38 (115)
                      +|..+|.|||.|..|..+|..|++.| ++|.++++++
T Consensus        22 ~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           22 SMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             TSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            35578999999999999999999999 9999999875

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.44  E-value=0.00022  Score=46.56  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||+|..|..+|..|++.|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.44  E-value=0.00019  Score=50.61  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC---CCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL---GIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~---g~~v~viE~~~~~~   41 (115)
                      ..+++|||+|+.|+.+|..|++.   |.+|+++|+.+...
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  226 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL  226 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc
Confidence            46899999999999999999999   99999999987643

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.43  E-value=0.00015  Score=48.03  Aligned_cols=36  Identities=17%  Similarity=0.061  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+|.|||.|..|...|..|++.|++|+++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            468999999999999999999999999999987653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.42  E-value=0.0003  Score=50.02  Aligned_cols=57  Identities=12%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+++|||+|..|+.+|..|++.|.+|+++|+.+..... ..-.+.....+.+++.|+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~  271 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMKEQGME  271 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHHHHhCCcE
Confidence            78999999999999999999999999999998765322 1111122234455666653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.42  E-value=0.00026  Score=47.70  Aligned_cols=35  Identities=31%  Similarity=0.500  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      +.+|.|||+|..|..+|..|+..|+ +|.++|.++.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            4589999999999999999999998 9999998754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.40  E-value=0.00016  Score=50.28  Aligned_cols=36  Identities=28%  Similarity=0.461  Sum_probs=33.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .+++|||+|..|+.+|..|++.|.+|+++++.+...
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  184 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVL  184 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            589999999999999999999999999999887653

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.40  E-value=0.0003  Score=46.18  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=32.3

Q ss_pred             CCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            2 ETVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         2 ~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.|..+|.|||+ |..|..+|..|.+.|++|.++++++
T Consensus         8 ~~mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A            8 DVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             SCCCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            334468999999 9999999999999999999999764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.38  E-value=0.00022  Score=47.89  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++.+..
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            47999999999999999999999999999987654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.37  E-value=0.00042  Score=48.48  Aligned_cols=36  Identities=36%  Similarity=0.607  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+..
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA  207 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC
Confidence            468999999999999999999999999999988765

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.37  E-value=0.00027  Score=47.62  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|.|||+|..|...|..|++.|++|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999998764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.36  E-value=0.00022  Score=47.97  Aligned_cols=38  Identities=24%  Similarity=0.426  Sum_probs=30.8

Q ss_pred             CCCc-cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METV-EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~-~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |++. ..+|.|||+|..|...|..++.+|++|+++|.++
T Consensus         1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4443 3579999999999999999999999999999764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.36  E-value=0.00028  Score=46.36  Aligned_cols=36  Identities=25%  Similarity=0.526  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+..
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            368999999999999999999999999999987654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.35  E-value=0.00036  Score=43.94  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|.|||+|..|..+|..|++.|++|.++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            45799999999999999999999999999998764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.35  E-value=0.00025  Score=49.67  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|.|||.|.+|+++|..|.++|++|++.|.+.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3689999999999999999999999999999854

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=97.35  E-value=0.00027  Score=49.94  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|.|||.|..|+.+|..|++.|++|+++++++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3589999999999999999999999999999764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.33  E-value=0.00035  Score=50.07  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|+|||+|++|+-+|..|++.+.+|+++++.+..
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            468999999999999999999999999999998763

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.32  E-value=0.00031  Score=46.09  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|++|+.+|..|++.+.+|+++++.+..
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            357999999999999999999999999999988765

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=97.31  E-value=0.00038  Score=49.25  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            45899999999999999999999999999997653

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.31  E-value=0.00034  Score=47.18  Aligned_cols=37  Identities=35%  Similarity=0.543  Sum_probs=31.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      |+....+|+|||+|..|.++|..|+..|+  ++.++|.+
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            55666789999999999999999999987  89999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.30  E-value=0.00049  Score=48.10  Aligned_cols=58  Identities=16%  Similarity=0.308  Sum_probs=41.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..+++.|.+|+++++.+..... ..-.+.....+.++..|+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~  227 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAAMEEKGIR  227 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCE
Confidence            568999999999999999999999999999988764321 1111222234455666653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.29  E-value=0.00031  Score=48.77  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+.+|+|+|.|..|..+|..|.+.|++|+++|+++.
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            346799999999999999999999999999998754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.28  E-value=0.00054  Score=45.56  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|.|||+|..|...|..|.+.|++|.++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.28  E-value=0.00035  Score=50.00  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            46899999999999999999999999999999876

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.28  E-value=0.00051  Score=48.25  Aligned_cols=34  Identities=38%  Similarity=0.548  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.+++|||+|..|+.+|..|++.|.+|+++++..
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            4679999999999999999999999999999853

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.27  E-value=0.00046  Score=46.10  Aligned_cols=33  Identities=33%  Similarity=0.463  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      .+|+|||+|..|..+|..++..|+ ++.++|.++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            589999999999999999999996 999999764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.26  E-value=0.00037  Score=46.21  Aligned_cols=36  Identities=25%  Similarity=0.489  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+..
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            358999999999999999999999999999988664

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=97.26  E-value=0.00031  Score=48.97  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++|.|||.|.+|+.+|..|+++|++|+++|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            467999999999999999999999999999976543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.26  E-value=0.00042  Score=45.01  Aligned_cols=50  Identities=20%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|++|+.+|..|++.| +|+++++.+.        .+.....+.++..|+.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~--------~~~~~~~~~l~~~gv~  190 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV--------EPDADQHALLAARGVR  190 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC--------CCCHHHHHHHHHTTCE
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC--------CCCHHHHHHHHHCCcE
Confidence            467999999999999999999999 9999987654        2344556777777764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.26  E-value=0.00058  Score=43.69  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ...|+|||||.+|...+..|.+.|.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            468999999999999999999999999999754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.25  E-value=0.0009  Score=44.91  Aligned_cols=35  Identities=23%  Similarity=0.127  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHH-HHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLA-TALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~-~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|.|||.|.+|++ +|..|.++|++|.+.|+++.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            367999999999996 89999999999999998654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.24  E-value=0.00041  Score=45.96  Aligned_cols=35  Identities=31%  Similarity=0.509  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|||+|++|+.+|..|++.|.+|+++++.+..
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTL  187 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcC
Confidence            57999999999999999999999999999987654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.24  E-value=0.00037  Score=49.23  Aligned_cols=59  Identities=29%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHH----CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKR----LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~----~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||+.|+.+|..|++    .|.+|+++++.+........-.+.....+.+++.|+.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~  242 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVK  242 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCE
Confidence            4689999999999999999887    4789999987654322211111222234455555653

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.23  E-value=0.0006  Score=45.83  Aligned_cols=35  Identities=14%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ..+|+|||+|..|..+|..|+..|+ +|.++|.++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            3589999999999999999999998 9999997643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.22  E-value=0.0004  Score=48.66  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            467999999999999999999999999999987654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.22  E-value=0.00045  Score=45.48  Aligned_cols=36  Identities=25%  Similarity=0.516  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|++|+.+|..|++.|.+|+++++.+..
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  180 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc
Confidence            357999999999999999999999999999987654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.22  E-value=0.00052  Score=48.13  Aligned_cols=36  Identities=19%  Similarity=0.439  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ...+.|||.|..|+.+|..|++.|++|+++++++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            367999999999999999999999999999987753

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.22  E-value=0.00046  Score=49.50  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            46899999999999999999999999999999876

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.21  E-value=0.00047  Score=45.94  Aligned_cols=36  Identities=22%  Similarity=0.469  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+..
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            368999999999999999999999999999987654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.21  E-value=0.00057  Score=45.51  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||.|..|..+|..|++.|++|+++++++.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.20  E-value=0.00066  Score=45.42  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      ..+|.|||.|..|..+|..|.+.|+  +|.++++++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            4689999999999999999999999  999999765

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.20  E-value=0.0009  Score=44.22  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|++|+.+|..|++.|.+|+++++.+..
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            357999999999999999999999999999987765

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.19  E-value=0.00054  Score=47.62  Aligned_cols=36  Identities=11%  Similarity=0.078  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~~   40 (115)
                      ..+|+|||+|.+|+-+|..|++.+.+ |+++++.+..
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            35799999999999999999999998 9999987643

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.19  E-value=0.00051  Score=45.92  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|.|||+|..|..+|..|++.|++|+++ +.+
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            468999999999999999999999999999 543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.17  E-value=0.00047  Score=48.75  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC-CC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL-GI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~-g~-~v~viE~~~~   39 (115)
                      ++|.|||.|..|+.+|..|++. |+ +|+++++++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            5899999999999999999999 99 9999998876

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.17  E-value=0.0014  Score=42.24  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC----CceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG----IKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g----~~v~viE~~~~~   40 (115)
                      ++|.|||+|..|...|..|.+.|    ++|.++++++..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            47999999999999999999999    799999987653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.17  E-value=0.00043  Score=45.99  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+++|.|||+|..|...|..|+ +|++|+++|+++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            3578999999999999999999 999999999865

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.17  E-value=0.00031  Score=47.67  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||+|..|..+|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999998764

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.16  E-value=0.00065  Score=43.73  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...+|.|||+|..|..+|..|.+.|++|+++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            356899999999999999999999999999997654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.16  E-value=0.00041  Score=45.67  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+++|.|||+|..|...|..|.+.|++|.++++++
T Consensus         4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            45689999999999999999999999999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.15  E-value=0.00061  Score=44.73  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|.|||.|..|...|..|++.|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.14  E-value=0.00065  Score=45.23  Aligned_cols=32  Identities=25%  Similarity=0.520  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +|+|||+|..|..+|..|+..|+  +|.++|.++
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            79999999999999999999998  899998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.14  E-value=0.00082  Score=47.23  Aligned_cols=36  Identities=33%  Similarity=0.588  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|+.|+.+|..+++.|.+|+++++.+..
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            568999999999999999999999999999987754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.00078  Score=46.68  Aligned_cols=35  Identities=26%  Similarity=0.471  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|.+|+.+|..+...|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.13  E-value=0.00049  Score=45.67  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|..|+.+|..|++.|.+|+++++.+..
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF  187 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            358999999999999999999999999999987764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.11  E-value=0.001  Score=44.15  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|.|||.|..|..+|..|.+.|++|+++++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998753

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.10  E-value=0.00061  Score=46.45  Aligned_cols=35  Identities=11%  Similarity=0.053  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-------CceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-------IKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-------~~v~viE~~~~   39 (115)
                      ..+|.|||+|..|..+|..|++.|       ++|+++++++.
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            357999999999999999999999       99999998755

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.09  E-value=0.00062  Score=44.94  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+..
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~  190 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY  190 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCcc
Confidence            57999999999999999999999999999987654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.09  E-value=0.00062  Score=45.40  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      ..+|.|||.|..|..+|..|.+.|+ +|.+++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            3589999999999999999999999 99999986

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.08  E-value=0.00043  Score=43.88  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEE-EcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLV-LEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~v-iE~~~~   39 (115)
                      ++|.|||+|..|..+|..|.+.|++|.+ +++++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            5899999999999999999999999998 787654

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.08  E-value=0.00054  Score=47.90  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|.|||.|..|+.+|..|++ |++|+++++++.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            589999999999999999998 999999997654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.08  E-value=0.0012  Score=43.77  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIG-AGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.||| +|..|..+|..|++.|++|.++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            5799999 999999999999999999999997653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.08  E-value=0.0011  Score=42.67  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC----ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI----KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~----~v~viE~~~~   39 (115)
                      .++|.|||+|..|...|..|.+.|+    +|.++++++.
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            3589999999999999999999998    9999998753

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=97.07  E-value=0.0011  Score=44.78  Aligned_cols=35  Identities=23%  Similarity=0.511  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ++|+|+|||..|..+++.+++.|++|.++|.++..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            67999999999999999999999999999977653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.07  E-value=0.00042  Score=45.64  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ...|+|||||.+|+..+..|.+.|++|+|++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            468999999999999999999999999999854

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.06  E-value=0.00057  Score=47.90  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|.|||.|-+||.+|..+++.|++|+.+|-++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            3689999999999999999999999999998664

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.06  E-value=0.0011  Score=41.79  Aligned_cols=34  Identities=26%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|.|||+|..|...|..|.+.|++|.++++++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=97.06  E-value=0.00097  Score=46.95  Aligned_cols=34  Identities=29%  Similarity=0.546  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..+++.|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999998654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.0011  Score=47.11  Aligned_cols=36  Identities=17%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |..+|.|||.|..|..+|..|+++|++|.++++++.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999999999999999999999999998753

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=97.05  E-value=0.00091  Score=47.06  Aligned_cols=33  Identities=27%  Similarity=0.527  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..|+++|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.05  E-value=0.00054  Score=47.63  Aligned_cols=36  Identities=17%  Similarity=0.343  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      ..+|+|||+|.+|+-+|..|++.  +.+|+++++.+..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            46899999999999999999998  8999999988754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.05  E-value=0.00047  Score=48.90  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=42.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--------------CCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHH
Q 047339            7 DVVIIGAGIAGLATALALKRL--------------GIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL   66 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~--------------g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i   66 (115)
                      .++|||||++|+.+|..|+..              ..+|+|+|..+...+ ...-.+.....+.|++.|+.-..
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~-~~~~~~~~~~~~~L~~~GV~v~~  291 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLN-MFEKKLSSYAQSHLENTSIKVHL  291 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEET
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccccc-CCCHHHHHHHHHHHHhcceeeec
Confidence            699999999999999988753              368999999887543 22223444466788888876433

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.04  E-value=0.001  Score=44.43  Aligned_cols=33  Identities=30%  Similarity=0.523  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~   39 (115)
                      +|+|||+|..|..+|..|++.  +++|.++|.++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            799999999999999999985  789999998753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.03  E-value=0.0012  Score=44.54  Aligned_cols=35  Identities=17%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ..+|.|||+|..|..+|..|+..|+ ++.++|.++.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            3589999999999999999999998 9999997654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.03  E-value=0.00048  Score=45.77  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .|..+|.+||-|..|..+|..|.++|++|+++++++.
T Consensus         3 ~Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            3 AMSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             -CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CCCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4666899999999999999999999999999998664

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.03  E-value=0.00061  Score=47.49  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||+|..|+.+|..|++.|++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.02  E-value=0.00072  Score=45.10  Aligned_cols=30  Identities=30%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +|.|||+|..|..+|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.02  E-value=0.00051  Score=47.23  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHH-CCCceEEEc
Q 047339            6 KDVVIIGAGIAGLATALALKR-LGIKPLVLE   35 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE   35 (115)
                      ++|.|||+|..|..+|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            579999999999999999988 599999998

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.99  E-value=0.00066  Score=47.74  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~   38 (115)
                      ++|.|||.|..|+.+|..|++.  |++|+++++++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5799999999999999999998  89999999764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.99  E-value=0.0014  Score=44.00  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .+|.|||+|..|.++|..|+..++ ++.++|.++.
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            589999999999999999999988 8999997653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.98  E-value=0.00082  Score=45.15  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|++|+.+|..|++.|.+|+++++.+..
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            357999999999999999999999999999987654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.97  E-value=0.0007  Score=44.46  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||.|..|..+|..|.+.|++|+++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998765

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.96  E-value=0.0015  Score=45.84  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~~   40 (115)
                      ..+|+|||||.+|+-+|..+.+.|.+ |+++++.+..
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            35799999999999999999999985 9999987653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.96  E-value=0.00094  Score=45.92  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|.+|+.+|..+...|.+|+++|+++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.96  E-value=0.0002  Score=46.05  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |.....+|.|||.|..|..+|..|+++|++|..+++...
T Consensus         2 ~~~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~~   40 (232)
T 3dfu_A            2 MQAPRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPED   40 (232)
T ss_dssp             -CCCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGGG
T ss_pred             CCCCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHHH
Confidence            334456899999999999999999999999999987543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.95  E-value=0.00094  Score=47.50  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|+|||+|.+|+.+|..|++.|.+|+++++.+..
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  390 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCccc
Confidence            357999999999999999999999999999987665

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.95  E-value=0.0013  Score=43.99  Aligned_cols=37  Identities=32%  Similarity=0.550  Sum_probs=30.9

Q ss_pred             CCC-ccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            1 MET-VEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         1 m~~-~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      |+. +..+|+|||+|..|.++|+.|+..+.  ++.++|.+
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            554 34689999999999999999998875  78888865

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.92  E-value=0.0011  Score=42.99  Aligned_cols=35  Identities=14%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |.++|+|.|+|..|..++..|.++|++|.++.+++
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            45689999999999999999999999999998765

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.92  E-value=0.0015  Score=42.79  Aligned_cols=37  Identities=24%  Similarity=0.410  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+...
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~  190 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK  190 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC
Confidence            3679999999999999999999999999999887653

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.92  E-value=0.0012  Score=44.24  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      .+.+|+|||+|.+|.++|..|+..+.  .+.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34699999999999999999999885  78888864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.92  E-value=0.0017  Score=45.96  Aligned_cols=35  Identities=17%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.+|.|||.|..|..+|..|++.|++|.++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999998763

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.91  E-value=0.001  Score=43.80  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.+|.|||+|..|...|..|.+.|++|.++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999998764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.91  E-value=0.0021  Score=41.84  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|+|.|+|..|..++..|.++|++|.++.++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999999999999999999999999988643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.91  E-value=0.0011  Score=43.01  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3589999999999999999999998 788999765

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.91  E-value=0.0014  Score=46.30  Aligned_cols=35  Identities=17%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+.+|.|||.|..|..+|..|+++|++|.++++++
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            35689999999999999999999999999999864

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.90  E-value=0.0011  Score=44.37  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||.|..|..+|..|++.|++|.++++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            4899999999999999999999999999998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.89  E-value=0.0011  Score=48.75  Aligned_cols=58  Identities=17%  Similarity=0.044  Sum_probs=41.7

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            6 KDVVIIG--AGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         6 ~~v~IvG--~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+|+|||  +|.+|+.+|..|++.|.+|+++++.+................+.+++.|+.
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~  583 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVA  583 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCE
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCE
Confidence            4699999  999999999999999999999998776533221111223345566666654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.88  E-value=0.00045  Score=40.81  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+++|||+|..|...+..|.+.|++|.++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~   55 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID   55 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            35799999999999999999999999999987643

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.88  E-value=0.0011  Score=45.88  Aligned_cols=31  Identities=16%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||+|..|+.+|..|++ |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            69999999999999999999 99999999764

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.87  E-value=0.0017  Score=43.50  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC----CceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG----IKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g----~~v~viE~~~~   39 (115)
                      ++|.|||+|..|..+|..|.+.|    ++|.++++++.
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            57999999999999999999999    89999998753

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.87  E-value=0.001  Score=47.07  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~   38 (115)
                      ++|.|||.|..|+.+|..|++.  |++|+++++++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999998  79999999754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.86  E-value=0.00077  Score=45.43  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC-------CceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG-------IKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g-------~~v~viE~~~~   39 (115)
                      ++|.|||+|..|..+|..|++.|       ++|.++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            47999999999999999999999       89999998654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.86  E-value=0.0015  Score=42.65  Aligned_cols=36  Identities=28%  Similarity=0.484  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+++|||+|+.|+.+|..|.+.+.+|+++++.+..
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            357999999999999999999999999999987664

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.86  E-value=0.0013  Score=43.98  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +|.|||+|..|..+|..|++.|+  +|.++|+++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            69999999999999999999998  999998763

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.85  E-value=0.002  Score=45.51  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|||.|..|..+|..|++.|++|.++++++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999865

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.84  E-value=0.0018  Score=44.21  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|.|||.|..|..+|..|.+.|++|.++++++
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999865

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.83  E-value=0.00057  Score=43.52  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.+++|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            5689999999999999999999999 999998753

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.82  E-value=0.0007  Score=50.07  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=31.1

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIG--AGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG--~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|+|||  ||..|+.+|..|++.|.+|+++++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            5799998  99999999999999999999999887

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.82  E-value=0.0019  Score=42.08  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||+|..|...|..|.+.|++|.++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999998764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.81  E-value=0.0025  Score=41.84  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC---ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI---KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~---~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..|.+.|+   +|.++++++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            579999999999999999999998   9999998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.81  E-value=0.0024  Score=45.02  Aligned_cols=34  Identities=15%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.+|.|||.|..|..+|..|++.|++|.++++++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            3589999999999999999999999999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.79  E-value=0.0023  Score=43.91  Aligned_cols=35  Identities=29%  Similarity=0.497  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|.+|+.++..+...|.+|+++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.79  E-value=0.0017  Score=41.86  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~   38 (115)
                      +|.|||+|..|...|..|.+.| ++|.++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999999999 9999998764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.78  E-value=0.0018  Score=42.55  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||+|..|...|..|.+.|++|.++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            699999999999999999999999999998653

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.77  E-value=0.0013  Score=44.23  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHHCCC-------ceEEEcCC
Q 047339            1 METVEKDVVIIGA-GIAGLATALALKRLGI-------KPLVLEKS   37 (115)
Q Consensus         1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~-------~v~viE~~   37 (115)
                      |+..+.+|+|+|+ |..|..++..|...++       .+.++|..
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            5455679999998 9999999999998885       78888876

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.77  E-value=0.0015  Score=40.98  Aligned_cols=38  Identities=32%  Similarity=0.422  Sum_probs=31.5

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+.| ++|+|.|| |..|..++..|.++|++|.++.|++.
T Consensus         1 M~~m-~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            1 MEKV-KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             --CC-CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCCC-CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            5544 57999995 99999999999999999999998754

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.76  E-value=0.0029  Score=42.86  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|.|||.|..|..+|..|.+.|++|.++++++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.75  E-value=0.0021  Score=44.42  Aligned_cols=35  Identities=34%  Similarity=0.476  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|.+|+.++..+...|.+|+++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46799999999999999999999999999997654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.75  E-value=0.0018  Score=43.08  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~   38 (115)
                      ++|+|||+|..|..+|..|++.|  .+|.++++++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            47999999999999999999999  6899998764

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.74  E-value=0.0019  Score=42.95  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +|+|||+|..|.++|..|+..++  ++.++|.++
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            79999999999999999999998  899998754

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.74  E-value=0.0023  Score=39.98  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=29.7

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIG-AGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|+|+| +|..|...|..|.+.|++|.++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999 99999999999999999999998764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.74  E-value=0.0014  Score=49.92  Aligned_cols=48  Identities=13%  Similarity=0.070  Sum_probs=39.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      .+++|||+|+.|+.+|..|++.|.+|+|+|+.+....         . .+.++..|+.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~---------~-~~~l~~~GV~  332 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA---------A-AAQAVADGVQ  332 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH---------H-HHHHHHTTCC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch---------h-HHHHHhCCeE
Confidence            5799999999999999999999999999998876521         1 4566666654

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.73  E-value=0.0025  Score=41.21  Aligned_cols=34  Identities=32%  Similarity=0.483  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~   38 (115)
                      ..+|.|||+|..|...|..|.+.|++ |.++++++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            35899999999999999999999999 88998764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.69  E-value=0.0023  Score=44.88  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHH--------------------HCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALK--------------------RLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~--------------------~~g~-~v~viE~~~~   39 (115)
                      ..+++|||+|.+|+-+|..|+                    +.|. +|+|+++...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            368999999999999999999                    5687 6999998754

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.69  E-value=0.0024  Score=47.38  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..++++|++|+++|+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999999764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.68  E-value=0.0025  Score=43.35  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|+|+|+|.+|+.++..++..|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            679999999999999999999999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.68  E-value=0.0031  Score=45.17  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|+|+|..|..+|..|.+.|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            68999999999999999999999999999988764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.67  E-value=0.0025  Score=42.71  Aligned_cols=33  Identities=30%  Similarity=0.549  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~   39 (115)
                      +|.|||+|..|..+|..|++.++  ++.++|.++.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            79999999999999999999887  8999997653

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=96.67  E-value=0.0034  Score=42.76  Aligned_cols=39  Identities=21%  Similarity=0.511  Sum_probs=33.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+.+.++|+|+|+|..|...+..+.+.|++|.+++..+.
T Consensus         7 m~~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~   45 (391)
T 1kjq_A            7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (391)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            455668999999999999999999999999999986543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.67  E-value=0.0024  Score=42.08  Aligned_cols=52  Identities=23%  Similarity=0.342  Sum_probs=39.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||+|+.|+.+|..|++.+.+|+++++.+.....       ....+.|+..|+.
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~-------~~~~~~l~~~gv~  205 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH-------EHSVENLHASKVN  205 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC-------HHHHHHHHHSSCE
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc-------HHHHHHHhcCCeE
Confidence            357999999999999999999999999999987664221       2234456666654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.65  E-value=0.0014  Score=45.87  Aligned_cols=34  Identities=21%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -+..|||.|..|+.+|..|++.|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4688999999999999999999999999998754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.65  E-value=0.0029  Score=41.25  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..|.+.|+  +|.++++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            469999999999999999999998  899998754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.64  E-value=0.0034  Score=44.37  Aligned_cols=32  Identities=31%  Similarity=0.537  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||+|..|..+|..|++.|++|.++++++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            79999999999999999999999999999764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.63  E-value=0.0022  Score=41.85  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..|.+ |++|.++++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            379999999999999999999 999999997653

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.63  E-value=0.0026  Score=42.44  Aligned_cols=34  Identities=32%  Similarity=0.683  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|+.+...|+  ++.++|.++.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            689999999999999999999998  8999997653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.60  E-value=0.0033  Score=42.92  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ...|+|+|+|..|+.+|..++..|.+|+++++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4679999999999999999999999999999764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.59  E-value=0.0046  Score=41.69  Aligned_cols=34  Identities=41%  Similarity=0.443  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..|++.|++|.++++++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            4799999999999999999999999999987653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.58  E-value=0.0042  Score=38.13  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=30.7

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.|+|.|| |..|..++..|.++|++|.++.+++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            47999998 99999999999999999999988654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.58  E-value=0.003  Score=40.71  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|.|||+|..|...|..|.+.|+.|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            579999999999999999999999999998764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.55  E-value=0.0035  Score=42.27  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      ..+|+|||+|..|..+|..|+..++  ++.++|.+
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            4689999999999999999999887  79999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.54  E-value=0.003  Score=41.89  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|+|||+|.+|+.+|..|++.+ +|+++.+..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            368999999999999999999998 699998763

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.54  E-value=0.0043  Score=47.65  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||||..|+.+|..+.+.|. +|+++++.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3489999999999999999999997 899999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.53  E-value=0.0048  Score=40.35  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +|+|.|| |..|..++..|.++|++|+++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            6999998 999999999999999999999886543

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.51  E-value=0.0055  Score=41.80  Aligned_cols=35  Identities=31%  Similarity=0.493  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...|+|+|+|..|..++..+.+.|++|.+++..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46799999999999999999999999999987554

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.50  E-value=0.0053  Score=40.29  Aligned_cols=35  Identities=34%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+++|+|+|-+|..++..|.+.|.+|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999988754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.49  E-value=0.0032  Score=46.66  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..+++.|++|+++|+++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999999765

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.49  E-value=0.0035  Score=44.03  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ...|+|||+|.+|...+..|.+.|.+|+|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            467999999999999999999999999999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.48  E-value=0.0041  Score=42.02  Aligned_cols=34  Identities=12%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      ..+|.|||+|..|..+|..++..|+  ++.++|.+.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            3689999999999999999999997  899998743

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.47  E-value=0.0046  Score=40.37  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ...++|+|+|-+|..+|..|++.|.+|++++++.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999998763

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.47  E-value=0.0056  Score=40.15  Aligned_cols=36  Identities=28%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.++|+|.|| |..|..++..|.++|++|.++.+...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            3578999999 99999999999999999999988654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.46  E-value=0.0019  Score=42.33  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|.|||+|..|...|..|.+.|++|.+++ ++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            479999999999999999999999999998 554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.45  E-value=0.0048  Score=42.28  Aligned_cols=34  Identities=38%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ...|+|+|+|..|+.+|..++..|.+|+++++++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4679999999999999999999999999999764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.45  E-value=0.0054  Score=41.41  Aligned_cols=33  Identities=15%  Similarity=0.433  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      ..+|.|||+|..|...|+.|...|+  ++.++|.+
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            4689999999999999999999987  78999865

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.42  E-value=0.0042  Score=40.70  Aligned_cols=33  Identities=36%  Similarity=0.493  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~   38 (115)
                      .+|.|||+|..|...|..|.+.  +++|.++++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            5799999999999999999987  67899998754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.42  E-value=0.0057  Score=37.98  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|+|.|| |..|..++..|.++|++|.++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6999996 9999999999999999999998874

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.41  E-value=0.0043  Score=38.45  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             CCCccccEEEEC-CCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339            1 METVEKDVVIIG-AGIAGLATALALKRLGI--KPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG-~G~~Gl~~A~~l~~~g~--~v~viE~~~~   39 (115)
                      |+.|.++|+|.| +|..|..++..|.++|.  +|.++.+++.
T Consensus         1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~   42 (215)
T 2a35_A            1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL   42 (215)
T ss_dssp             ---CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred             CCCCCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCc
Confidence            555667899999 59999999999999998  9998887654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.40  E-value=0.0051  Score=41.42  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      .+.+|+|||+|.+|.++|+.|...+.  .+.++|.+
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            45789999999999999999998886  78888864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.39  E-value=0.0043  Score=42.86  Aligned_cols=34  Identities=35%  Similarity=0.432  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      .+.+|+|+|+|.+|+.+|..+...|. +|.++|++
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            35689999999999999999999998 99999986

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.39  E-value=0.0074  Score=41.25  Aligned_cols=35  Identities=40%  Similarity=0.526  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|..|..++..+.+.|++|.+++..+.
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            35799999999999999999999999999986543

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.37  E-value=0.0074  Score=41.86  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|+|+|+|..|..++..+++.|++|.+++..+.
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            45799999999999999999999999999986543

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.36  E-value=0.004  Score=40.18  Aligned_cols=30  Identities=23%  Similarity=0.252  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +|.|||+|..|..+|..|.+.|++|.++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            699999999999999999999999999876

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.36  E-value=0.0048  Score=41.00  Aligned_cols=34  Identities=38%  Similarity=0.491  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|-.|..+|.+|++.|+ +++|+|...
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4689999999999999999999997 678888654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.35  E-value=0.0085  Score=37.43  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=30.5

Q ss_pred             ccccEEEECC-CHHHHHHHHHHH-HCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALK-RLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~-~~g~~v~viE~~~~   39 (115)
                      |.+.|+|.|| |-.|..++..|. +.|++|.++.+++.
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            3345999995 999999999999 89999999988654

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.34  E-value=0.0062  Score=40.65  Aligned_cols=32  Identities=34%  Similarity=0.555  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +|.|||+|..|..+|+.++..++ .+.++|.++
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            58999999999999999998888 599999764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.33  E-value=0.0055  Score=40.64  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+++|+|+|.+|..+|..|.+.|+ +|+|+.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899998764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.29  E-value=0.007  Score=37.73  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=29.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|+|.|| |..|..++..|.++|++|.++.|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5999998 9999999999999999999998764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.27  E-value=0.0086  Score=40.63  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=29.0

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      ..+|+|||+ |-.|.++|+.+...|.  ++.++|.+
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            358999997 9999999999999885  89999865

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.27  E-value=0.0057  Score=40.03  Aligned_cols=34  Identities=32%  Similarity=0.510  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+++|||+|.+|..+|..|.+.|++|.+++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999998764

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=96.27  E-value=0.0089  Score=41.36  Aligned_cols=35  Identities=20%  Similarity=0.534  Sum_probs=31.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|+|+|+|..|..++..+.+.|++|.+++..+
T Consensus        18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~   52 (433)
T 2dwc_A           18 SAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYA   52 (433)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            34689999999999999999999999999998654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.27  E-value=0.0064  Score=40.76  Aligned_cols=33  Identities=27%  Similarity=0.554  Sum_probs=29.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      +.+|+|||+|.+|.++|+.|...+.  .+.++|.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            4689999999999999999999886  78888864

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.26  E-value=0.0049  Score=41.89  Aligned_cols=37  Identities=30%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+-.+++|+|+|+|.+|-.+|..|++ .++|++.+++.
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~   48 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNN   48 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCH
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCH
Confidence            33456789999999999999999975 57888887643

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.26  E-value=0.007  Score=38.22  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+.|+|.|| |..|..++..|.++|++|.++.|++
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            467999998 9999999999999999999998864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.26  E-value=0.0055  Score=42.20  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=31.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      .+.+|+|+|+|.+|..+|..|...|. +|.++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45789999999999999999999998 79999987

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.26  E-value=0.0071  Score=41.00  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|-.|+.+|.+|++.|+ +++|+|...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4689999999999999999999997 677887644

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.23  E-value=0.0067  Score=40.00  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=31.4

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+..|+|.|| |..|..++..|.+.|++|.++.|+..
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3458999996 99999999999999999999988754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.23  E-value=0.0048  Score=45.17  Aligned_cols=28  Identities=36%  Similarity=0.471  Sum_probs=24.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceE
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPL   32 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~   32 (115)
                      ..+|+|||||..|+.+|..|++.|.+|+
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vt  521 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTS  521 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCcc
Confidence            4689999999999999999998885443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.23  E-value=0.0075  Score=39.91  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..++.|||+|..|..+|..|...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4679999999999999999999999999998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.22  E-value=0.0076  Score=39.78  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..++.|||.|..|..+|..|...|.+|.++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4679999999999999999999999999998764

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.20  E-value=0.0041  Score=41.83  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=29.6

Q ss_pred             ccccEEEEC-CCHHHHHHHHHHHHCC--CceEEEcCCC
Q 047339            4 VEKDVVIIG-AGIAGLATALALKRLG--IKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG-~G~~Gl~~A~~l~~~g--~~v~viE~~~   38 (115)
                      .+.+|+|+| +|..|..++..|...|  .++.++|.++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~   44 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVN   44 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            456899999 7999999999999988  6888998654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.19  E-value=0.0071  Score=39.84  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ..+++|+|+|-+|..++..|.+.|. +|+|+.|+..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            4679999999999999999999998 8999988754

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.15  E-value=0.00086  Score=42.06  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|.|||+|..|..+|..|.+.|++|.++++++.
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            45799999999999999999999999999987654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.15  E-value=0.0051  Score=41.05  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.+.|+|.|| |..|..++..|.++|++|.++.+...
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3568999996 99999999999999999999988543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.14  E-value=0.0077  Score=42.19  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--------------------CC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--------------------GI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--------------------g~-~v~viE~~~~   39 (115)
                      ..+|+|||+|.+|+-+|..|++.                    |. +|+|+++...
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            35799999999999999999874                    54 8999998754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.14  E-value=0.0055  Score=40.07  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ...++|+|+|-+|..+|..|.+.|.+|+|+.|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999998764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.07  E-value=0.0096  Score=38.93  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=31.2

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+++ ..|+|.|| |..|..++..|.+.|++|.++.|+.
T Consensus         1 M~~~-~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            1 MGSR-SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             -CCC-CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCC-CEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            5433 56999997 9999999999999999999998864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.07  E-value=0.0076  Score=43.20  Aligned_cols=36  Identities=11%  Similarity=0.052  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+.+++|+|.|..|..+|..|.+.|++|+++|.++.
T Consensus       126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~  161 (565)
T 4gx0_A          126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYD  161 (565)
T ss_dssp             CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHH
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            467899999999999999999999999999997753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.06  E-value=0.012  Score=41.77  Aligned_cols=34  Identities=35%  Similarity=0.404  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ...++|+|+|..|..+|..|+..|.+|.++|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578999999999999999999999999998754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.06  E-value=0.012  Score=38.12  Aligned_cols=32  Identities=34%  Similarity=0.577  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++|||+|-+|...|..|.+.|++|.+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999998763

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.06  E-value=0.013  Score=39.04  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+.|+|.|| |..|..++..|.++|++|.++.+.+.
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            468999998 99999999999999999999988753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.05  E-value=0.0074  Score=39.08  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=29.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999997 67888754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.05  E-value=0.012  Score=39.72  Aligned_cols=34  Identities=29%  Similarity=0.376  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||.|..|..+|..|+..|++|.++++...
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            5799999999999999999999999999998654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.05  E-value=0.0093  Score=42.40  Aligned_cols=34  Identities=35%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ...|+|+|.|..|..+|..|+..|.+|.++|+++
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999754

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.05  E-value=0.0063  Score=40.70  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCC--CceEEEcCCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLG--IKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g--~~v~viE~~~   38 (115)
                      +|+|+|+ |..|..++..|+..+  ..+.++|.++
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 999999999999988  5799998764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.04  E-value=0.0083  Score=40.82  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            4689999999999999999999997 688888653

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.04  E-value=0.011  Score=38.89  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=30.0

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .++|+|.|| |..|..++..|.++|++|.++.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS   35 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            357999995 999999999999999999999887

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.03  E-value=0.0077  Score=42.09  Aligned_cols=34  Identities=35%  Similarity=0.397  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -..++|+|.|..|..+|..|...|.+|.++|+++
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3579999999999999999999999999999754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.01  E-value=0.016  Score=39.33  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=31.0

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+.|+|.|| |..|..++..|.++|++|.++.+...
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   64 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   64 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            357999998 99999999999999999999987653

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.01  E-value=0.0067  Score=40.61  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=29.0

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCC-------ceEEEcCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGI-------KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~-------~v~viE~~   37 (115)
                      +++|+|+|| |..|..++..|.++|+       +|.++|..
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            458999998 9999999999999886       79999864

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.01  E-value=0.014  Score=38.66  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.+.|+|.|| |..|..++..|.++|++|.++.+...
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            4468999995 99999999999999999999987543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.00  E-value=0.0067  Score=45.17  Aligned_cols=34  Identities=26%  Similarity=0.501  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|.-.|..++..|++|+++|.++.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            5799999999999999999999999999997653

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.00  E-value=0.0093  Score=39.18  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=28.5

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+.|+|.|| |..|..++..|.++|++|.++.++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            357999998 9999999999999999999998653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=95.99  E-value=0.0087  Score=37.74  Aligned_cols=38  Identities=32%  Similarity=0.370  Sum_probs=29.3

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |+.+.+.++|.|| |-.|..+|..|.++|++|.++.++.
T Consensus         1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~   39 (234)
T 2ehd_A            1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDE   39 (234)
T ss_dssp             ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6666667888875 5679999999999999999998753

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.99  E-value=0.012  Score=40.55  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|+|+|+|..|..++..+.+.|++|.+++ .+
T Consensus        24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           24 SRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            5689999999999999999999999999999 54

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.97  E-value=0.014  Score=37.91  Aligned_cols=32  Identities=34%  Similarity=0.498  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +++|+|+|-+|..++..|.+.|. +|.|++|+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999998 899998864

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.95  E-value=0.0099  Score=39.49  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +|.|||+|-.|.++|+.|..++.  ++.|+|.++
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            79999999999999999998875  688998654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.93  E-value=0.012  Score=40.24  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ...|+|+|.|..|..+|..|.+.|.+|++.|.+
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999999999999999999999988753

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.92  E-value=0.016  Score=38.48  Aligned_cols=34  Identities=29%  Similarity=0.525  Sum_probs=29.6

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+.|+|.|| |..|..++..|.++|++|.++.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            357999985 9999999999999999999997643

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=95.90  E-value=0.011  Score=42.22  Aligned_cols=36  Identities=17%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|+|||+|.+|+-+|..+++.+.+|+++++.+..
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            468999999999999999999999999999987653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=95.88  E-value=0.011  Score=40.92  Aligned_cols=34  Identities=32%  Similarity=0.509  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ...|+|+|+|..|..++..|...|. +|+++++..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4579999999999999999999998 899998764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.86  E-value=0.014  Score=39.17  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      ...++|+|+|-+|..+|..|++.|. +|+|+.|+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            4579999999999999999999998 89999887

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.86  E-value=0.015  Score=38.34  Aligned_cols=34  Identities=38%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ...++|+|+|-+|..++..|++.|. +|+|+.|+.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            4579999999999999999999998 699998764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.84  E-value=0.015  Score=39.07  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+|.|||.|..|..+|..|+..|++|.+++++..
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  189 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP  189 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            35799999999999999999999999999997653

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.83  E-value=0.018  Score=38.88  Aligned_cols=36  Identities=31%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|.|||.|-.|..+|..|+..|.+|.++++....
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~  199 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKP  199 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchh
Confidence            357999999999999999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-18
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-17
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	3e-16
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	6e-15
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	2e-13
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-13
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	3e-13
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-13
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	1e-12
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	5e-12
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	6e-12
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	6e-12
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	8e-12
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	1e-11
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-11
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-11
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-11
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	4e-11
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	6e-11
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	6e-11
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	7e-11
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-10
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	2e-10
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	3e-10
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	3e-10
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-10
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	6e-10
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	8e-10
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	1e-09
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	1e-09
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	8e-09
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	9e-09
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-08
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-08
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-08
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	2e-08
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	2e-08
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	2e-08
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	4e-08
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	5e-08
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	6e-08
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-07
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	1e-07
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	2e-07
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-07
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	3e-07
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	3e-07
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	8e-07
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	8e-07
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	1e-06
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	4e-06
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-06
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	2e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	3e-05
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	5e-05
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	7e-05
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	8e-05
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	9e-05
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	1e-04
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	2e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-04
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	3e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	3e-04
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	6e-04
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	0.002
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	0.002
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	0.002

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK 65
          D++I GAGI GL+ ALAL + GI    +LE S  +R  G  IN  P A  AL  LG+   
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 62

Query: 66 LASI 69
          LA+ 
Sbjct: 63 LAAT 66

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 72.1 bits (175), Expect = 4e-17
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG-LRGTGAAINFAPNAWLALDALGVSH 64
            + ++G  I+GL  AL L+  G+   V E+S   L G G  I   P     L   GV  
Sbjct: 5  DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL 64

Query: 65 K 65
           
Sbjct: 65 D 65

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 70.5 bits (171), Expect = 3e-16
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 7  DVVIIGAGIAGLATALAL-----KRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG 61
          DV+I+GAG AGL  A  L     ++  +K  +++K       G A         +L  LG
Sbjct: 9  DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 68

Query: 62 VSHKLASIYDPVKRLFV 78
          ++ K+ S  + +  + +
Sbjct: 69 LADKILSEANDMSTIAL 85

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 66.5 bits (161), Expect = 6e-15
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS--DGLRGTGAAINFAPNAWLALD 58
          M+T    V IIGAG +GL     L + GI  ++LE+   D + G   A          L 
Sbjct: 1  MKT---QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLR 57

Query: 59 ALGVSHKLASIYDPVKRLFVTN 80
            GV  ++A      + + +  
Sbjct: 58 EAGVDRRMARDGLVHEGVEIAF 79

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 62.2 bits (150), Expect = 2e-13
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          DV+++GAG +GL     L+ LG    V+E +  + G 
Sbjct: 9  DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV 45

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.6 bits (150), Expect = 2e-13
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAW 54
          DV+++G G+     +  +   G K L ++++    G  ++I      +
Sbjct: 8  DVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELY 55

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 62.1 bits (149), Expect = 3e-13
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-TGAA---INFAPNAWLA 56
          M+    D ++IG G+AGL  A+A ++ G+  +VL      R  + AA   +  +      
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKM 60

Query: 57 LD 58
           D
Sbjct: 61 SD 62

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 3e-13
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINF 49
          ++T + DV+++G GI     +  L   G K L ++K D   G  A++  
Sbjct: 2  IDT-DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTL 49

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 60.1 bits (144), Expect = 1e-12
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          DV+++GAG  G+A    L + G+K L+++  D     G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 58.2 bits (139), Expect = 5e-12
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD-GLRGTGAA 46
          M+    + V+IG GI G A A  L +      + E    G R T AA
Sbjct: 1  MKR-HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAA 46

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 6e-12
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL 66
          DVV++G GI+G+A A  L   G+  +VLE  D + G    +      ++ L        +
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGG----SYV 56

Query: 67 ASIYDPVKRLF 77
              + + RL 
Sbjct: 57 GPTQNRILRLA 67

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 58.4 bits (140), Expect = 6e-12
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWL 55
             V+++GAG AG   +LA K+ G   ++++K+    G         NA  
Sbjct: 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVG 69

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 57.9 bits (139), Expect = 8e-12
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
           D +I+G+G+ G   A  LK+L  K LV+EK + + G
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 57.3 bits (137), Expect = 1e-11
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRG-TGAA---INFAPN 52
          M+T + D+ I+GAG AGL  A+A  +     K  ++ K   +R  T AA         
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQ 58

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 57.0 bits (136), Expect = 2e-11
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          DVV++G+G AG + A++    G K +++EK   + G   
Sbjct: 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 56.6 bits (135), Expect = 2e-11
 Identities = 16/71 (22%), Positives = 23/71 (32%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSH 64
            DV++IG G +GL  A+     G   L+L+K + L    A              L    
Sbjct: 2  HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV 61

Query: 65 KLASIYDPVKR 75
          K          
Sbjct: 62 KHIPGNGRFLY 72

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 56.7 bits (136), Expect = 2e-11
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          K ++I+GAG +G      L   G +  ++++ D + G
Sbjct: 3  KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 56.1 bits (134), Expect = 4e-11
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLRGTGAA 46
          E VE D++IIG G +G   A          G+K  ++EK+   R    A
Sbjct: 18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVA 66

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 55.5 bits (132), Expect = 6e-11
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          K VVI+GAG+AGL+ A  L   G +  VLE S+   G
Sbjct: 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 67

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 55.4 bits (132), Expect = 6e-11
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          DVVIIG+G AGLA A++ +  G K ++LEK     G   
Sbjct: 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 55.4 bits (132), Expect = 7e-11
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGLRGT 43
          + T+ + + IIGAG +GL TA AL       +  + E+     G 
Sbjct: 1  LPTI-RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 44

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 54.6 bits (129), Expect = 2e-10
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGT 43
           V+++GAG++G++ A  L   GI   L+LE +D + G 
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR 39

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 54.4 bits (129), Expect = 2e-10
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGTGA 45
           +VIIGAGI G   A  L   G     VL++       G+
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGS 42

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 53.6 bits (127), Expect = 3e-10
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          +V ++G GI+GLA A  L+  G   ++LE S  L G
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 37

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 53.7 bits (127), Expect = 3e-10
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
          K V +IGAG++GLA A  LK  G+   V E      G
Sbjct: 2  KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 38

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 3e-10
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42
            V+IIG+G++GLA A  L+  G+   +LE  D + G
Sbjct: 6  GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 52.6 bits (125), Expect = 6e-10
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          + +IIGAG AGL  A  L +LG    V +    +   
Sbjct: 6  ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK 42

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.5 bits (122), Expect = 8e-10
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          +ET    + I+G+G A    A+   R  +KPL+ E 
Sbjct: 1  LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG 36

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 51.6 bits (122), Expect = 1e-09
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT--GAAINFAPNAW 54
          M   +K VV++G+G+ GL++AL L R G    +L +      +    A  +A   W
Sbjct: 2  MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANW 57

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 1  METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-TGAA 46
          +   E D V+IGAG AG+  AL + + G    +L K    R  T +A
Sbjct: 3  LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSA 49

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.5 bits (117), Expect = 8e-09
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 1   METVEKDVVIIGAGIAGLATALAL-KRLGIKPLVLEKSDGLRGTGAAINFAPNAWL---- 55
           +   E DVV++GAG AGL+ A  + K   ++  ++E+S    G         +A +    
Sbjct: 29  ITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKP 88

Query: 56  ---ALDALGVSHK 65
               LD +GV++ 
Sbjct: 89  AHLFLDEIGVAYD 101

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 48.6 bits (114), Expect = 9e-09
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39
          DV+I+G+G AG A A+   R GI+  ++ +  G
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG 35

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 48.3 bits (114), Expect = 1e-08
 Identities = 20/55 (36%), Positives = 26/55 (47%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDA 59
          E DVVIIG G  G   A+   +LG K   +EK   L GT   +   P+  L   +
Sbjct: 3  ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSS 57

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 48.4 bits (114), Expect = 1e-08
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          DVV++G G  G + A A    G+K  ++E+   L G 
Sbjct: 8  DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV 44

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRL------GIKPLVLEKSD 38
             E DVVI+GAG AGL+ A  LK+L       ++  ++EK+ 
Sbjct: 29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 71

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46
          DV+IIG+G AGL+ AL L     + +VL K     G+   
Sbjct: 9  DVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFY 47

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43
          +T++  ++IIG G  G   A+   +LGI  +++E    L GT
Sbjct: 2  QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGT 42

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.4 bits (111), Expect = 2e-08
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKP-LVLEKSDGLRGTGAAINFAPNAW 54
          E     + ++GAG A ++ A  L RLG     + EK + + G   +        
Sbjct: 1  EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLP 54

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (111), Expect = 4e-08
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAW 54
          DVVIIG G AG   A+   +LG     +EK   L GT   +   P+  
Sbjct: 7  DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKA 54

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45
          DV++IGAG  G   A+   +LG+K  ++EK  G  G  A
Sbjct: 5  DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 46.8 bits (110), Expect = 6e-08
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          +E + +++GAG  G   A+   +LG K  ++EK +
Sbjct: 2  IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 46.1 bits (108), Expect = 1e-07
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 2  ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDA 59
          +  E D + IG G AG   +  L+ +G + L++++   L G+       P+   +  A
Sbjct: 39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCA 96

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 45.8 bits (108), Expect = 1e-07
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKS 37
           V+I+GAG +G  TA  L + G++  +L +S
Sbjct: 4  QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS 34

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWL 55
          D+++IG G  G+A A    R   K  ++EK   L GT   +   P   +
Sbjct: 3  DLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTCVNVGCVPKKIM 50

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (106), Expect = 2e-07
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          D++IIG G  GLA A    +   K +VL+   
Sbjct: 5  DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.9 bits (105), Expect = 3e-07
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPLVLEK--------SDGLRGTGAAINFAPNAW 54
          VV+IGAG+ GL+TAL +       L            +       AA  + P   
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTS 57

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (105), Expect = 3e-07
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 1  METVEKDVVIIGAGIAGLATA--LALKRLGIKPLVLEKSDGLRGT 43
           +    DV+I+GAG +GL+ A  +A  R  +K  ++E S    G 
Sbjct: 46 DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 90

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 8e-07
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWL 55
          D ++IG G  GLA+A     LG +  V+E    L GT   +   P   +
Sbjct: 5  DYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNVGCVPKKVM 52

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 8e-07
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          D + IG G  G+A+       G K  ++E 
Sbjct: 4  DYIAIGGGSGGIASINRAAMYGQKCALIEA 33

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 1e-06
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 3  TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36
          T    ++I+G+G AG   A+   R  ++P+++  
Sbjct: 3  TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG 36

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 41.8 bits (97), Expect = 4e-06
 Identities = 13/78 (16%), Positives = 20/78 (25%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKL 66
            ++IG+G  G   AL L + GI   ++E        G+                     
Sbjct: 9  PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADK 68

Query: 67 ASIYDPVKRLFVTNLRTG 84
                    F  N    
Sbjct: 69 TDQPVSNFMGFGINKSID 86

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 41.9 bits (97), Expect = 4e-06
 Identities = 13/52 (25%), Positives = 18/52 (34%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALD 58
            V+IG G     +AL L   G++ L+LE        G   N          
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDK 55

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLE 35
          DVVI+G+G  G   A  L   G K  + +
Sbjct: 6  DVVIVGSGPIGCTYARELVGAGYKVAMFD 34

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.9 bits (89), Expect = 3e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPL---VLEKSDGLRGTGAAINFAPNAWL 55
           +VI+G G AG   AL       +     V++  DG+ G     +  P+   
Sbjct: 3  RIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLDDCVPSKTF 53

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 38.2 bits (87), Expect = 5e-05
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSD 38
          + VV++G G  G   A  +K     I+  ++E + 
Sbjct: 3  RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 7e-05
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
           +VVI+G G+AG+  A  L+  G +  +    D
Sbjct: 4  DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.8 bits (86), Expect = 8e-05
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 6  KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
            VV++GAG+A ++    L++ G + L+    D
Sbjct: 4  APVVVLGAGLASVSFVAELRQAGYQGLITVVGD 36

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.7 bits (86), Expect = 9e-05
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 7/42 (16%)

Query: 8  VVIIGAGIAGLATALALKRLGIKPL-------VLEKSDGLRG 42
          + I+G+G +    A +L +             +LE      G
Sbjct: 5  IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 46

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44
          D+V+IGAG  GL  A     L  K + +     + G  
Sbjct: 5  DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPP 42

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 8  VVIIGAGIAGLATA--LALKRLGIKPLVLEKSDGLRG 42
          + ++G+G AG  TA  L          + EK     G
Sbjct: 4  ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 40

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 2e-04
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 5  EKDVVIIGAGIAGLATALALKRLG 28
              ++IG G A  A A +++   
Sbjct: 4  HVPFLLIGGGTAAFAAARSIRARD 27

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.4 bits (82), Expect = 2e-04
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 8  VVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLR 41
          V+++G+   G      L  L    +    EK D + 
Sbjct: 3  VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLE 35
          D +I+GAG  G+  A  L   G K L+LE
Sbjct: 4  DYIIVGAGPGGIIAADRLSEAGKKVLLLE 32

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 36.1 bits (82), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 7  DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38
          D+V+IGAG  GL        L  K + +    
Sbjct: 5  DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ 36

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 35.6 bits (80), Expect = 6e-04
 Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)

Query: 8   VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPN 52
            +I  A   G   A  ++    +  +  K + +   G       N
Sbjct: 183 RLIADATFTGHRVAREIEEANPQIAIPYKRETIAW-GTPHMPGGN 226

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 7  DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGAAINFAPNAWL 55
          D VI+G G +G   A     L    K LVLE+  G   T        + ++
Sbjct: 28 DYVIVGGGTSGCPLA---ATLSEKYKVLVLER--GSLPTAYPNVLTADGFV 73

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 7/33 (21%)

Query: 7  DVVIIGAGIAGLATALALKRL----GIKPLVLE 35
          D +I G G+ GL TA    RL     I  LV+E
Sbjct: 19 DYIIAGGGLTGLTTA---ARLTENPNISVLVIE 48

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 7  DVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLRGTGAAINFAPNAWLAL 57
          D +I G G+ GL  A    +L     IK LV+EK       GA I   PNA+  +
Sbjct: 26 DYIIAGGGLTGLTVA---AKLTENPKIKVLVIEKGFYESNDGAIIE-DPNAYGQI 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.76
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.74
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.71
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.57
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.49
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.48
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.47
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.39
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.39
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.38
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.37
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.35
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.34
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.34
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.33
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.33
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.29
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.29
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.28
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.26
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.25
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.24
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.24
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.23
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.22
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.22
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.22
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.21
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.2
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.19
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.18
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.18
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.17
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.15
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.13
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.12
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.11
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.11
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.1
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.1
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.1
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.09
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.08
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.07
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	99.06
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.06
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.06
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.05
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.05
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.03
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.03
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.98
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.96
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.95
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.9
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.9
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.9
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.9
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.89
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.88
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.87
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.86
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.85
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.85
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.84
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.83
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.82
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.81
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.79
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.77
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.72
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.72
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.7
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.69
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.68
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.61
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.59
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.58
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.56
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.54
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.53
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.51
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.38
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.37
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.35
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.34
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.24
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.23
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.23
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.21
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.2
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.1
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.99
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.97
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.97
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.93
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.9
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.87
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.86
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.86
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.86
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.79
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.71
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.7
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.63
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.63
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.56
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.56
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.54
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.52
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.5
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.48
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.43
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.41
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.38
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.36
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.31
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.3
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.29
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.28
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.26
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.25
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.24
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.24
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.22
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.21
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.19
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.18
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.18
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.17
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.12
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.11
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.1
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.1
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.04
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.03
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.01
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.0
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.98
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.96
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.92
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.9
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.87
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.85
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.84
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.83
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.71
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.71
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.69
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.69
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.63
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.57
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.54
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.54
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	96.53
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.52
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.51
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.5
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.46
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.38
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.23
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.22
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.2
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.18
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.15
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.14
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.12
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	96.08
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.91
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.86
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.82
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.8
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.78
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.74
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.71
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.66
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.51
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.47
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.44
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.4
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.38
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.29
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.27
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.18
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.17
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.99
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.88
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.82
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.79
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.78
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.7
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.51
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.48
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.48
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	94.42
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.38
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.33
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.25
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.24
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.14
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.07
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.97
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.96
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.96
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.9
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.89
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.86
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	93.82
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.8
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.77
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.77
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.76
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.73
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.53
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.5
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.4
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.36
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.36
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.35
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.28
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	93.27
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	93.15
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.09
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.05
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.99
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.97
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.95
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.93
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.82
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.76
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.68
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.67
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.56
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.56
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.54
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.53
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.51
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.5
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.45
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.38
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	92.29
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.2
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	92.17
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.16
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	92.13
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.09
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.09
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.08
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	92.07
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.04
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.04
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.95
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.91
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.84
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	91.84
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	91.73
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.72
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.43
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.39
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	91.38
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.35
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	91.33
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.24
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.14
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.11
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.9
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	90.81
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	90.76
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	90.67
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	90.63
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.63
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.61
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.6
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.56
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	90.54
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.51
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	90.49
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.46
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.33
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.32
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.23
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.18
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	90.1
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	90.0
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.91
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	89.9
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	89.9
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	89.82
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.77
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.52
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	89.45
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	89.3
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.26
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.26
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	88.99
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	88.3
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	88.23
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	88.18
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.16
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	88.14
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	87.89
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	87.89
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	87.84
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.57
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	87.44
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	87.14
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	87.03
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	87.0
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	86.74
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	86.44
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	86.31
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	86.26
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.25
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.18
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.12
d2r8oa3	136	Transketolase (TK), C-domain {Escherichia coli [Ta	85.99
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	85.86
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	85.81
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	85.74
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	85.56
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	85.16
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	84.8
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	84.65
d1w85b2	132	Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d	84.51
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.48
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	84.43
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.3
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	83.92
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	83.9
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	83.78
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	83.68
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	83.46
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.44
d1umdb2	137	Branched-chain alpha-keto acid dehydrogenase {Ther	83.39
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	83.28
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	82.96
d1itza3	136	Transketolase (TK), C-domain {Maize (Zea mays) [Ta	82.63
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	82.61
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	82.41
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	82.19
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	82.13
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	81.94
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.91
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	81.51
d1jzta_	243	Hypothetical protein YNL200c (YNU0_YEAST) {Baker's	81.35
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	80.74
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	80.37
d2ozlb2	138	E1-beta subunit of pyruvate dehydrogenase, C-domai	80.27
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	80.07

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.76  E-value=4.1e-18  Score=112.92  Aligned_cols=80  Identities=26%  Similarity=0.310  Sum_probs=72.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHH-----HCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEE
Q 047339            4 VEKDVVIIGAGIAGLATALALK-----RLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFV   78 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~-----~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~   78 (115)
                      ..|||+||||||+||++|..|+     ++|++|+|+|+.+.+...++++.+.++++++|+.+|+++.+.....+.....+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~   85 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIAL   85 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcCCcceeEE
Confidence            4599999999999999999996     57999999999999888899999999999999999999999998888888877


Q ss_pred             EECCC
Q 047339           79 TNLRT   83 (115)
Q Consensus        79 ~~~~~   83 (115)
                      +....
T Consensus        86 ~~~~~   90 (360)
T d1pn0a1          86 YNPDE   90 (360)
T ss_dssp             EEECT
T ss_pred             Eeccc
Confidence            66543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.74  E-value=1.5e-17  Score=107.07  Aligned_cols=87  Identities=40%  Similarity=0.540  Sum_probs=74.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRT   83 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~   83 (115)
                      +.||+||||||+||++|+.|+++|+ +|+|+|+.+.+...++++.+.+++.++|+.+++.+.+...........+++ .+
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~   79 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYID-QS   79 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEC-TT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEc-CC
Confidence            4699999999999999999999996 899999999988889999999999999999999999998877776666665 44


Q ss_pred             Cee-EEeecC
Q 047339           84 GAT-QETSLA   92 (115)
Q Consensus        84 ~~~-~~~~~~   92 (115)
                      +.. ...+..
T Consensus        80 g~~~~~~~~~   89 (288)
T d3c96a1          80 GATVWSEPRG   89 (288)
T ss_dssp             SCEEEEEECG
T ss_pred             CCEEEecccc
Confidence            554 444443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.71  E-value=5.6e-18  Score=110.22  Aligned_cols=79  Identities=24%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL   81 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~   81 (115)
                      |++||+||||||+||++|+.|+++|++|+|+|+.+..  ...+++..+.++++++|+.+|+++.+.....+.....+++.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~   80 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA   80 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEec
Confidence            5789999999999999999999999999999998753  23556788999999999999999999988888888888764


Q ss_pred             C
Q 047339           82 R   82 (115)
Q Consensus        82 ~   82 (115)
                      .
T Consensus        81 ~   81 (292)
T d1k0ia1          81 G   81 (292)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.57  E-value=2.2e-14  Score=91.52  Aligned_cols=80  Identities=28%  Similarity=0.388  Sum_probs=63.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRT   83 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~   83 (115)
                      ..+|+||||||+||++|+.|+++|++|+|+||++.+ ...+.++.++++..+.|+.+|+.......  +.....+.+...
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~   81 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISV--PSSSMEYVDALT   81 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCB--CCCEEEEEETTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhcc--CCCcceeEeccC
Confidence            468999999999999999999999999999998765 34577888999999999999987655432  334555555555


Q ss_pred             Cee
Q 047339           84 GAT   86 (115)
Q Consensus        84 ~~~   86 (115)
                      ++.
T Consensus        82 ~~~   84 (265)
T d2voua1          82 GER   84 (265)
T ss_dssp             CCE
T ss_pred             Cce
Confidence            554

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=2.5e-14  Score=89.63  Aligned_cols=44  Identities=30%  Similarity=0.417  Sum_probs=39.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA   46 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~   46 (115)
                      +.++||+|||+|++||++|+.|+++|++|+|+|+++.+++...+
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t   46 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   46 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEE
Confidence            44699999999999999999999999999999999988765544

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=8.3e-14  Score=94.00  Aligned_cols=53  Identities=34%  Similarity=0.486  Sum_probs=43.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH------CCCceEEEcCCCCCCCcce-eeeeCccHHHH
Q 047339            4 VEKDVVIIGAGIAGLATALALKR------LGIKPLVLEKSDGLRGTGA-AINFAPNAWLA   56 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~------~g~~v~viE~~~~~~~~~~-~~~~~~~~~~~   56 (115)
                      +++||+||||||+|+++|+.|++      +|++|+|+||...++.... +..+.++.++.
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~   90 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEE   90 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHH
Confidence            47999999999999999999998      8999999999998865543 44566655443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.39  E-value=6.3e-13  Score=85.21  Aligned_cols=60  Identities=33%  Similarity=0.506  Sum_probs=47.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee---------------eCccHHHHHHHcCChHH
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN---------------FAPNAWLALDALGVSHK   65 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~---------------~~~~~~~~l~~~g~~~~   65 (115)
                      ++|+|||||++||++|+.|+++|++|+|+|+++.+++......               ..++..++++.+++...
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~   76 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREK   76 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEecCceEEeCCCHHHHHHHHHhCCccc
Confidence            5799999999999999999999999999999988766443211               23446677777776544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.39  E-value=2.5e-13  Score=86.13  Aligned_cols=38  Identities=34%  Similarity=0.594  Sum_probs=35.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      |++||+||||||+|+++|+.|+++|++|+|+|+++.++
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g   38 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG   38 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            68999999999999999999999999999999987764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.38  E-value=9.4e-13  Score=84.32  Aligned_cols=62  Identities=29%  Similarity=0.470  Sum_probs=47.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee---------------eeCccHHHHHHHcCChHHHhc
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI---------------NFAPNAWLALDALGVSHKLAS   68 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~---------------~~~~~~~~~l~~~g~~~~i~~   68 (115)
                      ||+|||||++||++|+.|+++|++|+|+|+++.+++.....               ...+...++++..++...+..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~   78 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRA   78 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCCEEEecCceEEecCCHHHHHHHHHhccccccee
Confidence            89999999999999999999999999999998876543321               113445667788877655443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.37  E-value=5e-13  Score=83.98  Aligned_cols=40  Identities=35%  Similarity=0.641  Sum_probs=35.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCCCCcce
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGLRGTGA   45 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~~~~~~   45 (115)
                      +||+|||||++||++|+.|+++|+ +|+|+|+.+.+++...
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~   41 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH   41 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEE
Confidence            589999999999999999999996 7999999988765443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.3e-13  Score=85.87  Aligned_cols=42  Identities=36%  Similarity=0.592  Sum_probs=37.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      ..+.+|+|||||++||++|+.|+++|++|+|+|+++.+++..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~   44 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV   44 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccE
Confidence            456789999999999999999999999999999999886643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-12  Score=86.12  Aligned_cols=37  Identities=43%  Similarity=0.736  Sum_probs=34.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      ||+|||||++||++|+.|+++|++|+|+|+.+.+++.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr   37 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR   37 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcce
Confidence            7999999999999999999999999999998877553

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.34  E-value=5.8e-13  Score=85.00  Aligned_cols=39  Identities=33%  Similarity=0.491  Sum_probs=35.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +.++||+||||||+||++|+.|+++|++|+|+|+++.++
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            445899999999999999999999999999999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.33  E-value=8.9e-13  Score=85.75  Aligned_cols=40  Identities=45%  Similarity=0.600  Sum_probs=36.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .+++|+|||||++||++|+.|+++|++|+|+|+.+.+++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~   68 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   68 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCe
Confidence            4579999999999999999999999999999998887653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1e-12  Score=80.24  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=36.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .+++|+||||||+||++|+.|+++|++|+|||+.+.+++.
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~   81 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ   81 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCce
Confidence            4689999999999999999999999999999999887653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.29  E-value=2.1e-12  Score=80.50  Aligned_cols=38  Identities=37%  Similarity=0.621  Sum_probs=34.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+||++||||||+|+++|+++++.|.+|+|+|+....
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            45899999999999999999999999999999986543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.29  E-value=2.7e-12  Score=81.12  Aligned_cols=39  Identities=36%  Similarity=0.572  Sum_probs=34.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |...+.+|+|||||++||++|+.|+++|++|+|+||...
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            334567899999999999999999999999999999754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2.8e-12  Score=83.78  Aligned_cols=40  Identities=38%  Similarity=0.578  Sum_probs=37.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA   45 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~   45 (115)
                      +|++|||||++||++|+.|++.|++|+|+|+++.+++...
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceE
Confidence            7999999999999999999999999999999998876544

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=4.8e-12  Score=81.71  Aligned_cols=58  Identities=33%  Similarity=0.492  Sum_probs=43.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCCCCCccee-------eeeCccHHHHHHHcC
Q 047339            4 VEKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDGLRGTGAA-------INFAPNAWLALDALG   61 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~~~~~~~~-------~~~~~~~~~~l~~~g   61 (115)
                      +++||+||||||+||++|+.|++ .|++|+|+|+.+.+++..+.       ..+......+++.++
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g   97 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIG   97 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcC
Confidence            46899999999999999999987 59999999999877553332       223344445555544

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.25  E-value=4.5e-12  Score=78.93  Aligned_cols=40  Identities=43%  Similarity=0.661  Sum_probs=36.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.+||++||||||+|+++|+++++.|.+|+|+|+.+..++
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG   40 (221)
T d1dxla1           1 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGG   40 (221)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCC
Confidence            3579999999999999999999999999999999876644

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.24  E-value=5.1e-12  Score=81.24  Aligned_cols=37  Identities=32%  Similarity=0.594  Sum_probs=34.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+|||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~   38 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPP   38 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3699999999999999999999999999999997654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.24  E-value=4.5e-12  Score=81.18  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ++||+|||||++|+++|+.|+++|.+|+|+|+.+..
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~   39 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMG   39 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            389999999999999999999999999999997643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=3.1e-12  Score=80.15  Aligned_cols=40  Identities=40%  Similarity=0.608  Sum_probs=35.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.+|||+||||||+|+++|+++++.|.+|+|+|+.+..++
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG   42 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG   42 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSH
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcce
Confidence            3479999999999999999999999999999998776544

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.22  E-value=4.6e-12  Score=79.61  Aligned_cols=39  Identities=33%  Similarity=0.533  Sum_probs=35.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+||++|||+||+||++|.+|++.|.+|+|+|+.+..+
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~G   42 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLG   42 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            357999999999999999999999999999999987654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=7.1e-12  Score=78.77  Aligned_cols=38  Identities=32%  Similarity=0.456  Sum_probs=34.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+||++||||||+|+++|+++++.|.+|+|+|+.+..
T Consensus         1 ~~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           1 SYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            45799999999999999999999999999999987653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.22  E-value=8.7e-12  Score=81.22  Aligned_cols=40  Identities=33%  Similarity=0.534  Sum_probs=36.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.++||+|||+|++||++|+.|+++|.+|+|+||.+..++
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG   53 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG   53 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            3468999999999999999999999999999999887543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.21  E-value=5e-12  Score=83.16  Aligned_cols=40  Identities=33%  Similarity=0.474  Sum_probs=36.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      |....+||+|||+|++||++|+.|+++|.+|+|+||.+..
T Consensus         1 m~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~   40 (336)
T d2bs2a2           1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (336)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             CCceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            6777899999999999999999999999999999997654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.20  E-value=5.4e-12  Score=77.49  Aligned_cols=39  Identities=31%  Similarity=0.451  Sum_probs=36.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |++.++||+||||||+|+.+|++|++.|.+|+|+|+...
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            778899999999999999999999999999999997654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.19  E-value=1.3e-11  Score=81.25  Aligned_cols=40  Identities=25%  Similarity=0.527  Sum_probs=36.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG   44 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~   44 (115)
                      .++|+|||||++||++|+.|++.|++|+|+|+++.+++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence            3689999999999999999999999999999999987644

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.18  E-value=1.7e-11  Score=74.93  Aligned_cols=39  Identities=31%  Similarity=0.498  Sum_probs=35.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~~~   42 (115)
                      .+.+|+||||||+||++|..|+++|+ +|+|+|+.+..++
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG   42 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCST
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccc
Confidence            46899999999999999999999998 5999999988754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.18  E-value=1.2e-11  Score=77.16  Aligned_cols=37  Identities=30%  Similarity=0.589  Sum_probs=34.7

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++++|++||||||+|+++|..+++.|.+|+|+|+..
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4789999999999999999999999999999999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.17  E-value=1.5e-11  Score=76.47  Aligned_cols=35  Identities=31%  Similarity=0.628  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++|++||||||+|+++|.++++.|.+|+|+|+..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            68999999999999999999999999999999865

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=1e-11  Score=77.88  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=35.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-------CceEEEcCCCCCCCc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-------IKPLVLEKSDGLRGT   43 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-------~~v~viE~~~~~~~~   43 (115)
                      +++|+|||+||+||++|+.|+++|       ++|+|||+.+.+++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~   47 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL   47 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe
Confidence            468999999999999999999988       479999999988653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.13  E-value=3.3e-11  Score=79.75  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=34.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +++||+||||+|++|+++|..|+++|++|+|+|+....
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            56799999999999999999999999999999987543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=2.8e-11  Score=75.21  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +||++||||||+|+++|..+++.|.+|+|+|+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            6899999999999999999999999999999864

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.11  E-value=5e-11  Score=78.15  Aligned_cols=39  Identities=46%  Similarity=0.595  Sum_probs=35.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      ..+||+|||+|++||++|+.|+++|++|+|+||.+..++
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG   60 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG   60 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCT
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            357999999999999999999999999999999877543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=3.9e-11  Score=72.67  Aligned_cols=32  Identities=38%  Similarity=0.566  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      |||+||||||+|+.+|+++++.|.+|+|+|+.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            89999999999999999999999999999975

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.10  E-value=6.8e-11  Score=74.46  Aligned_cols=40  Identities=25%  Similarity=0.410  Sum_probs=36.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT   43 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~   43 (115)
                      .+++|+||||||+|+++|..|+++|++|+|+|+.+..++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~   87 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH   87 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCc
Confidence            5689999999999999999999999999999999887653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.10  E-value=4.7e-11  Score=78.24  Aligned_cols=40  Identities=30%  Similarity=0.532  Sum_probs=36.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.++||+|||+|++||++|+.|+++|.+|+|+||.+..++
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG   56 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG   56 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            4578999999999999999999999999999999876543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.10  E-value=6.3e-11  Score=77.39  Aligned_cols=38  Identities=37%  Similarity=0.642  Sum_probs=35.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      +.||+|||||++||++|..|+++|++|+|+|+.+.+++
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG   44 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG   44 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc
Confidence            57999999999999999999999999999999887754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.09  E-value=7.4e-11  Score=77.73  Aligned_cols=41  Identities=34%  Similarity=0.473  Sum_probs=35.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLRG   42 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~~   42 (115)
                      |+++ ++|+|||||++||++|..|++.|  .+|+|+||++.+++
T Consensus         1 m~~~-KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG   43 (335)
T d2gv8a1           1 LPTI-RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG   43 (335)
T ss_dssp             CCSC-CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSST
T ss_pred             CCCC-CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCC
Confidence            6677 56999999999999999998876  59999999987653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=4.4e-11  Score=73.07  Aligned_cols=38  Identities=24%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +..+||+||||||+||.+|++|++.|.+|+|+|+....
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~   40 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG   40 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccc
Confidence            45689999999999999999999999999999986543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=7.9e-11  Score=73.77  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=33.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRG   42 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~   42 (115)
                      ++|+|||+||+||++|..|.++  |++|+|||+.+.+++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            5899999999999999999875  689999999988754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.3e-10  Score=75.99  Aligned_cols=58  Identities=29%  Similarity=0.418  Sum_probs=43.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCCccee-------eeeCccHHHHHHHcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGAA-------INFAPNAWLALDALGV   62 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~~~~~-------~~~~~~~~~~l~~~g~   62 (115)
                      ++||+||||||+||++|+.|+++  |++|+|+|+.+.+++..+.       ........++++.+|+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gi  116 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEI  116 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEecCEeCCHHHHHhHHHHHHHhCCc
Confidence            57999999999999999999975  9999999999887553321       2223334566676664

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=4.3e-11  Score=78.88  Aligned_cols=39  Identities=36%  Similarity=0.393  Sum_probs=35.5

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +..++||+|||+|++||++|+.++++|.+|+|+||.+..
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~   42 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            445799999999999999999999999999999997654

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=8.2e-11  Score=76.61  Aligned_cols=39  Identities=38%  Similarity=0.462  Sum_probs=34.9

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      +.+++||+|||+|++||++|+.+++.| +|+|+||.+..+
T Consensus         4 p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~g   42 (305)
T d1chua2           4 PEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTE   42 (305)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC
T ss_pred             CcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCC
Confidence            456799999999999999999999888 999999987654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.1e-10  Score=72.48  Aligned_cols=36  Identities=33%  Similarity=0.486  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..||++||||||+|+++|.++++.|.+|+|+|+...
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            368999999999999999999999999999998643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.05  E-value=2e-10  Score=65.28  Aligned_cols=60  Identities=27%  Similarity=0.344  Sum_probs=44.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+.+++|||||+.|+.+|..+++.|.+|+|+|+.+...+. ..-.+.....+.|++.|+.
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~   79 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVE   79 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             hcCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCE
Confidence            45689999999999999999999999999999998876432 1112333345566666654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=1.4e-10  Score=72.98  Aligned_cols=34  Identities=35%  Similarity=0.512  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .|||||||||++|+.+|+++++.|.+++|++++.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            5899999999999999999999999999999764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.03  E-value=1.5e-10  Score=76.42  Aligned_cols=38  Identities=34%  Similarity=0.491  Sum_probs=33.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHH----CCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKR----LGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~----~g~~v~viE~~~~~   40 (115)
                      ++++||+|||+|++||++|+.|++    +|.+|+|+||.+..
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            467899999999999999999875    69999999997664

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.8e-10  Score=75.45  Aligned_cols=40  Identities=35%  Similarity=0.488  Sum_probs=36.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      |++.++||+|||+|++||++|+.++++  |.+|+|+||....
T Consensus         1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            778899999999999999999999986  6799999997644

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.96  E-value=4.1e-10  Score=71.83  Aligned_cols=33  Identities=36%  Similarity=0.529  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ||++||||||+|+++|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.95  E-value=6.3e-10  Score=72.01  Aligned_cols=34  Identities=38%  Similarity=0.432  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .||+|||||++|+++|+.|+++|. +|+|+||+..
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~   36 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   36 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            599999999999999999999996 7999999853

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=1.5e-09  Score=62.01  Aligned_cols=61  Identities=28%  Similarity=0.358  Sum_probs=45.8

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +..+.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+.+. ..-.+.....+.|++.|+.
T Consensus        20 ~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~   80 (122)
T d1v59a2          20 KEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLD   80 (122)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCE
T ss_pred             ccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccce
Confidence            345789999999999999999999999999999998876432 2222333345566666654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.90  E-value=1e-09  Score=62.73  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=43.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||+.|+.+|..|++.|.+|+++|+.+.+......-.+.....+.++..|+.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~   88 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVD   88 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCE
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcE
Confidence            46899999999999999999999999999999987644332222223334556666654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.4e-09  Score=61.67  Aligned_cols=60  Identities=20%  Similarity=0.237  Sum_probs=44.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+.+++|||||++|+.+|..|++.|.+|+|+|+.+...+.. .-.+.....+.|++.|+.
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~-d~~~~~~~~~~l~~~GV~   78 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-DPMISETLVEVMNAEGPQ   78 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-CHHHHHHHHHHHHHHSCE
T ss_pred             hCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhc-chhhHHHHHHHHHHCCCE
Confidence            446789999999999999999999999999999988764321 112223345556666654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.90  E-value=9.7e-10  Score=68.60  Aligned_cols=35  Identities=31%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..||++|||+||+|+++|+++++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            56999999999999999999999886 688888753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.89  E-value=1.4e-09  Score=69.40  Aligned_cols=39  Identities=31%  Similarity=0.468  Sum_probs=35.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG   42 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~   42 (115)
                      .+||++|||||++|+.+|..+++.|.+|+++|+.+..++
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG   79 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG   79 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccc
Confidence            478999999999999999999999999999999887654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.88  E-value=1.2e-09  Score=72.51  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|+||||+|++|+.+|..|+++|++|+|+|+..
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46899999999999999999999999999999863

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.87  E-value=8.2e-10  Score=69.41  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=32.4

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      +.+||++|||+||+|+++|+++++.|. +|.|+|+...
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            357999999999999999999999885 6889997664

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.86  E-value=1.8e-09  Score=61.04  Aligned_cols=60  Identities=23%  Similarity=0.429  Sum_probs=44.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+.+++|||||+.|+.+|..|++.|.+|+|+|+.+...+.- .-.+.....+.|++.|+.
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~-d~~~~~~l~~~l~~~gV~   78 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY-DSELTAPVAESLKKLGIA   78 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS-CHHHHHHHHHHHHHHTCE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccc-cchhHHHHHHHHHhhcce
Confidence            356789999999999999999999999999999988764321 111233344566666654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.85  E-value=2.1e-09  Score=61.47  Aligned_cols=37  Identities=32%  Similarity=0.464  Sum_probs=33.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+++|||||+.|+.+|..|++.|.+|+++|+.+.+.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l   66 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL   66 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccc
Confidence            3589999999999999999999999999999987753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.85  E-value=1.6e-09  Score=72.11  Aligned_cols=35  Identities=37%  Similarity=0.533  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +||+||||+|++|+.+|..|+++|.+|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            58999999999999999999999999999998753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.84  E-value=1.8e-09  Score=71.55  Aligned_cols=33  Identities=33%  Similarity=0.556  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +||||||+|++|+.+|+.|+++|++|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            689999999999999999999999999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.83  E-value=3.2e-09  Score=60.38  Aligned_cols=61  Identities=30%  Similarity=0.366  Sum_probs=45.6

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +..+.+++|||||+.|+-+|..+++.|.+|+++|+.+...+ ...-.+....++.|++.|+.
T Consensus        19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-~~d~ei~~~l~~~l~~~Gv~   79 (119)
T d3lada2          19 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLK   79 (119)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEE
T ss_pred             ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-cccchhHHHHHHHHHhcCce
Confidence            44678999999999999999999999999999999887643 22222333355566666654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.82  E-value=3.6e-09  Score=61.32  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=42.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||++|+.+|..|++.|.+|+++|+.+.+......-.+.....+.++..|+.
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~   93 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD   93 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCE
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccE
Confidence            46899999999999999999999999999999887643322211222233445555543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.81  E-value=3.9e-09  Score=59.87  Aligned_cols=58  Identities=16%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+.+ ...-.+.....+.|++.|+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-~~d~~~~~~~~~~l~~~gV~   79 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDMKKNNIN   79 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccc-cccHHHHHHHHHHHHhCCCE
Confidence            56899999999999999999999999999999887642 22222333445566666654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.3e-09  Score=59.61  Aligned_cols=60  Identities=25%  Similarity=0.285  Sum_probs=44.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChH
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSH   64 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~   64 (115)
                      .+.+++|||||+.|+-+|..|++.|.+|+++|+.+...+. ..-.+.....+.|++.|+.-
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i   80 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEV   80 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEE
Confidence            4578999999999999999999999999999998876422 11123333455666666653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.77  E-value=4e-09  Score=60.17  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=33.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .+++|||||++|+.+|..|++.|.+|+++|+.+...
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~   68 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL   68 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc
Confidence            579999999999999999999999999999987763

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.72  E-value=6e-09  Score=69.79  Aligned_cols=36  Identities=36%  Similarity=0.469  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~   39 (115)
                      ..||+||||+|.+|+.+|..|++.+ ++|+|+|+.+.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            3589999999999999999999876 89999998753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.72  E-value=7.3e-09  Score=59.18  Aligned_cols=60  Identities=25%  Similarity=0.358  Sum_probs=45.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+.+++|||||..|+-+|..+++.|.+|+|+|+.+.+.+. ..-.+.....+.|++.|+.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~   82 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMK   82 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCC
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccce
Confidence            45678999999999999999999999999999998876432 2222333455666666654

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.70  E-value=7.4e-09  Score=69.57  Aligned_cols=35  Identities=40%  Similarity=0.487  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~   39 (115)
                      .||+||||+|++|+.+|..|++.+ ++|+|+|+...
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            599999999999999999999988 79999998864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=1.9e-08  Score=57.30  Aligned_cols=60  Identities=22%  Similarity=0.269  Sum_probs=42.0

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +..+.+++|||||+.|+-+|..|++.|.+|+|+++++...  ...-.+.....+.|++.|+.
T Consensus        17 ~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~--~~D~~~~~~l~~~l~~~Gv~   76 (122)
T d1h6va2          17 PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--GFDQDMANKIGEHMEEHGIK   76 (122)
T ss_dssp             SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST--TSCHHHHHHHHHHHHHTTEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc--cCCHHHHHHHHHHHHHCCCE
Confidence            3456789999999999999999999999999999764321  11111223344556665643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.68  E-value=1.2e-09  Score=68.13  Aligned_cols=30  Identities=40%  Similarity=0.492  Sum_probs=26.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +|+|||||++||++|+.|+++|++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            699999999999999999999987665554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.61  E-value=3.6e-08  Score=55.82  Aligned_cols=58  Identities=12%  Similarity=0.176  Sum_probs=43.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||+.|+-+|..|++.|.+|+++|+.+...+ ...-.+.....+.+++.|+.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~~gI~   79 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQGME   79 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhccccE
Confidence            36899999999999999999999999999999876542 22222334455566666653

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.59  E-value=1.1e-08  Score=67.85  Aligned_cols=34  Identities=38%  Similarity=0.487  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .||+||||+|++|+.+|..|+++ ++|+|+|+...
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            38999999999999999999986 99999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.58  E-value=2.5e-08  Score=57.11  Aligned_cols=39  Identities=38%  Similarity=0.554  Sum_probs=35.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      ..+.+++|||||..|+-+|..+++.|.+|+++|+.+...
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            346789999999999999999999999999999988764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.56  E-value=7.3e-08  Score=54.39  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=42.9

Q ss_pred             CccccEEEECCCHHHHHHHHHHHHC---CCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            3 TVEKDVVIIGAGIAGLATALALKRL---GIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~~---g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+.+++|||||+.|+-+|..+...   +.+|+|+|+.+.+.+ ...-.+.....+.|++.|+.
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-~~d~~~~~~l~~~l~~~GV~   80 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-GFDHTLREELTKQLTANGIQ   80 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCE
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-ccchHHHHHHHHHHHhcCcE
Confidence            3467899999999999999877764   457999999887642 22233344455667776764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.54  E-value=6.6e-08  Score=54.51  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=42.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            3 TVEKDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+.+++|||||+.|+-+|..+++   .|.+|+++|+.+.+.+ ...-.+.....+.|++.|+.
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~GI~   78 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTEQLRANGIN   78 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEE
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc-cccchhhHHHHHHHhhCcEE
Confidence            346789999999999999987665   4889999999877642 22212333445566666654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=3.2e-08  Score=61.92  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC---CceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG---IKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~   38 (115)
                      .+|+||||||+|+++|+++++.|   .+|+++|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            58999999999999999988865   5799999854

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.51  E-value=6.2e-08  Score=57.59  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~   39 (115)
                      ++|+|||||++|+.+|..|++.+  .+|+|+|+.+.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            58999999999999999999987  57899998764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.1e-07  Score=53.82  Aligned_cols=59  Identities=29%  Similarity=0.305  Sum_probs=40.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHH----CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            5 EKDVVIIGAGIAGLATALALKR----LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~----~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..+++|||||++|+-+|..|++    .|.+|+++|+.+.+......-.+..-..+.++..|+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~   99 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVK   99 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcE
Confidence            3579999999999999998864    5899999999887643322212222234556666654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.37  E-value=1.3e-07  Score=56.87  Aligned_cols=36  Identities=28%  Similarity=0.507  Sum_probs=31.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+.+|+|||||++|+.+|..|++.|.++.|++..+.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            567899999999999999999999988877775444

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.35  E-value=2.6e-07  Score=55.20  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|+|||||++|+.+|..|++.|.+++|++..+.+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            358999999999999999999999999888766543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.34  E-value=2.4e-07  Score=55.53  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|+|||+|..|+.+|..|+++|++|.++++.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.2e-06  Score=47.27  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++|+|+|.|.+|+++|.+|.++|.+|.++|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            467999999999999999999999999999986653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.23  E-value=6.3e-07  Score=52.83  Aligned_cols=33  Identities=30%  Similarity=0.410  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +|+|||||++|+.+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            69999999999999999975 7899999987654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=9.8e-07  Score=51.98  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +|+|+|+|..|..+|..|++.|++|+++++.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            7999999999999999999999999999987753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.21  E-value=7.9e-07  Score=53.97  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~   40 (115)
                      +|+|||||++|+.+|..|++.  +.+|+++|+.+..
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            799999999999999999986  4679999987765

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.20  E-value=6.1e-07  Score=53.31  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|+|||+|-+|..+|..|.++|++|+|++++..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            46899999999999999999999999999998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.10  E-value=1.8e-06  Score=49.39  Aligned_cols=57  Identities=19%  Similarity=0.285  Sum_probs=41.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC----C--cceeeeeCccHHHHHHHcCCh
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR----G--TGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~----~--~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++..-    .  ....+.-.....+.|+..++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~   64 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIE   64 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChh
Confidence            79999999999999999999999999999876421    0  111122233345677777654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.99  E-value=3.8e-06  Score=47.90  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++++|+|+|..|..+|..|.+.|++|+++|.++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            4689999999999999999999999999997653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.4e-06  Score=51.40  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~~   40 (115)
                      +++++|||||++|+.+|..|++.+.  +|+++++.+..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            5789999999999999999999875  58999875543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5e-06  Score=50.55  Aligned_cols=36  Identities=22%  Similarity=0.468  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +-.+|.|||+|..|...|..++++|++|.++|.++.
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            346899999999999999999999999999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.93  E-value=6.3e-06  Score=48.17  Aligned_cols=57  Identities=21%  Similarity=0.082  Sum_probs=40.1

Q ss_pred             ccEEEE--CCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            6 KDVVII--GAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         6 ~~v~Iv--G~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ..++|+  |||..|+.+|..|+++|.+|+|+++.+.+... ..........+.|++.|+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-~~~~~~~~~~~~l~~~GV~   98 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-HFTLEYPNMMRRLHELHVE   98 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-HHTTCHHHHHHHHHHTTCE
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-cchhHHHHHHHHHhhccce
Confidence            344554  99999999999999999999999998765322 2222333455566666654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=1.3e-05  Score=46.62  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=34.0

Q ss_pred             CCCccccEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIG-AGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+..-.+|.||| .|..|..+|..|.++|++|.++++...
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            344457899999 699999999999999999999998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.87  E-value=1.3e-05  Score=47.03  Aligned_cols=39  Identities=18%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      |.+.+++|.|||+|-.|.++|+.|+..++ ++.++|.++.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            34567899999999999999999999885 7889986653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.86  E-value=6.8e-06  Score=50.17  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||.|-.|+.+|..|++.|++|..+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            69999999999999999999999999999754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.86  E-value=6e-06  Score=50.07  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|+|+|+|.-|.++|..|++.|++|.++.+++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            479999999999999999999999999998653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.86  E-value=7e-06  Score=49.58  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.|||+|..|...|..++++|++|+++|.++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999998754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.79  E-value=1.7e-05  Score=46.73  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||.|..|..+|..|+++|++|+++++++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            69999999999999999999999999999864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.71  E-value=4.4e-05  Score=44.62  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~~   40 (115)
                      ..+|+|||||-+++-+|..+.+.|.+ |+++++.+..
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            46899999999999999999999875 7788876543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.70  E-value=2.1e-05  Score=47.13  Aligned_cols=30  Identities=30%  Similarity=0.335  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +|.|||+|..|.++|..|++.|++|.++.+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            899999999999999999999999999965

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.63  E-value=5.2e-05  Score=45.53  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+|+|+|+|.+|+.++..+.+.|..|.++|.+...
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            568999999999999999999999999999977653

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=7.6e-05  Score=51.16  Aligned_cols=56  Identities=25%  Similarity=0.328  Sum_probs=47.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG   61 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g   61 (115)
                      ++||+|+|-|+.=+.+|.+|++.|.+|+=+|+++.-++...++.+ ....++++...
T Consensus         6 e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~-~~L~~w~~~~~   61 (491)
T d1vg0a1           6 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSF-SGLLSWLKEYQ   61 (491)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH-HHHHHHHHHTC
T ss_pred             ccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeH-HHHHHHHHhhh
Confidence            589999999999999999999999999999999998777777654 44667776544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.56  E-value=6.7e-05  Score=44.43  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+.+|+|+|+|.+|+.++..+.+.|..|.++|.+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            367999999999999999999999999999997643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.3e-05  Score=45.82  Aligned_cols=26  Identities=38%  Similarity=0.533  Sum_probs=23.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIK   30 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~   30 (115)
                      ..+|+|||||.+|+.+|..+.+.|.+
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCc
Confidence            36899999999999999999999864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.54  E-value=6.2e-05  Score=43.66  Aligned_cols=34  Identities=26%  Similarity=0.543  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +++|.|||+|-.|.++|+.|+..+.  ++.++|.++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4689999999999999999999884  799999764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.52  E-value=4.5e-05  Score=45.17  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=29.9

Q ss_pred             cEEEE-CCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVII-GAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~Iv-G~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|+|| |+|..|..+|..|+++|++|++..|++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            68999 6699999999999999999999998753

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.50  E-value=9.5e-05  Score=40.84  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..++|+|||+|.+|...|..|.+.|.+|+++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3578999999999999999999999999999754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.48  E-value=0.00012  Score=43.47  Aligned_cols=34  Identities=18%  Similarity=0.383  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.+|.|||-|..|..+|..|.++|++|.++++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4689999999999999999999999999999875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=5.2e-05  Score=43.94  Aligned_cols=31  Identities=29%  Similarity=0.507  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      .+.++|||||..|+.-|..|.+.|.+|+|+.
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            4689999999999999999999999999995

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.41  E-value=0.00012  Score=42.18  Aligned_cols=34  Identities=35%  Similarity=0.514  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .+|.|||+|-.|.++|+.|+..+. ++.++|.++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            589999999999999999999885 8888886543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.38  E-value=7e-05  Score=45.15  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.|||.|-.||.+|..++ .|++|..+|-++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            7999999999999999887 599999999654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.36  E-value=0.00011  Score=43.26  Aligned_cols=34  Identities=35%  Similarity=0.482  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -.|+|+|+|+.|+.++..++..|.+|.++|.++.
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            4689999999999999999999999999997653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=0.00015  Score=42.00  Aligned_cols=35  Identities=31%  Similarity=0.550  Sum_probs=30.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      ...+|.|||+|-.|.++|+.|...++  ++.++|.++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            35789999999999999999999886  688888654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.30  E-value=0.00024  Score=42.05  Aligned_cols=33  Identities=30%  Similarity=0.507  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|-|||.|..|..+|..|.+.|++|.++++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            379999999999999999999999999999754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.29  E-value=0.00025  Score=40.81  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~   39 (115)
                      .+|.|||+|-.|.++|+.|...+.  ++.++|..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            589999999999999999999886  7999997654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.28  E-value=0.00029  Score=41.35  Aligned_cols=35  Identities=14%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      .+.+|.|||+|-.|.++|+.|...|+  ++.++|.++
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            45799999999999999999999996  788998753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00016  Score=42.59  Aligned_cols=34  Identities=32%  Similarity=0.495  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      -.|+|+|+|+.|+.++..++..|. +|.++|.++.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            468999999999999999999998 6888887653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00021  Score=42.02  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -.|+|+|+|+.|+.++..++..|.+|.+++.++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            4689999999999999999999999999998765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.24  E-value=0.00032  Score=40.71  Aligned_cols=34  Identities=15%  Similarity=0.388  Sum_probs=29.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      +.+|.|||+|-.|.++|+.|.+.++ ++.++|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4689999999999999999998875 677888654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.24  E-value=0.00021  Score=41.21  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=28.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      +.+|.|||+|-.|.++|+.|..+++  ++.++|.+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3579999999999999999999986  68888855

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.00019  Score=41.94  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -.|+|+|+|+.|+.++..++..|.+|.++++++.
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            4689999999999999999999999999987653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.21  E-value=0.00033  Score=40.18  Aligned_cols=33  Identities=30%  Similarity=0.560  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~   39 (115)
                      +|.|||+|-.|.++|+.|+..+.  ++.++|.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            79999999999999999999884  7899987654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.19  E-value=0.00025  Score=40.98  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      ++|.|||+|-.|.++|+.|..+|.  ++.++|.++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            589999999999999999999885  688888653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.18  E-value=0.00045  Score=37.63  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|+|||+|.+|.-.|..|++...++++..+...
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            46899999999999999999998888777665544

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.18  E-value=0.00021  Score=41.78  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||-|..|...|..|.++|++|.++++++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            699999999999999999999999999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00041  Score=40.02  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++|+|.|..|..++..|.+.|.+|+++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            69999999999999999999999999999765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.12  E-value=0.00028  Score=41.26  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|.+||-|..|...|..|.++|++|.++++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            4699999999999999999999999999998743

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00046  Score=40.43  Aligned_cols=34  Identities=18%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      ..+|.|||+|-.|.++|+.|...++  ++.++|.++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3479999999999999999999986  688988653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.10  E-value=0.00044  Score=40.49  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=28.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      .+|.|||.|..|.++|..|.+.|+  +|..+|+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            369999999999999999999996  566678755

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00068  Score=37.33  Aligned_cols=36  Identities=22%  Similarity=0.511  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|.|+|||--|-++|..+.+.|+++.++|.++..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            357999999999999999999999999999987664

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.04  E-value=0.00039  Score=40.11  Aligned_cols=31  Identities=39%  Similarity=0.532  Sum_probs=27.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      +|.|||+ |..|.++|+.|...+.  ++.++|.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            7999996 9999999999999985  78888865

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.00032  Score=41.65  Aligned_cols=34  Identities=38%  Similarity=0.512  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      -.|+|+|+|+.|+.+...++..|. +|.+++.++.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccc
Confidence            468899999999999999999997 6888987653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.01  E-value=0.0005  Score=39.67  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||.|..|..+|..|.++|+++.++++.+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            699999999999999999999999999986553

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.00  E-value=0.00049  Score=39.52  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +|.|||+|-.|.++|+.|..++.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            89999999999999999998885  588888654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00073  Score=37.92  Aligned_cols=36  Identities=25%  Similarity=0.516  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ..+|+|||+|-+.+-.|.+|++..-+|+++-|.+..
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            468999999999999999999999999999887665

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00058  Score=39.97  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -.|+|+|+|+.|+.++..++..|.++.+++.++.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            4689999999999999999999999988886544

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00098  Score=37.39  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .++|+|||+|-+.+-.|++|++..-+|+++-+.+..
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc
Confidence            468999999999999999999998899999887654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.90  E-value=0.00061  Score=40.27  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      -.|+|+|+|+.|++++..++..|. +|.+++.++.
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            479999999999999999999997 6888887653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.00077  Score=38.55  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~   38 (115)
                      +|.|||+|-.|.++|+.+..++.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            79999999999999999998874  688888653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00096  Score=39.21  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|+|+|+|-++-++++.|.+.|.++.|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4689999999999999999999999999998764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.84  E-value=0.00059  Score=39.28  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=26.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--ceEEEcCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGI--KPLVLEKS   37 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~--~v~viE~~   37 (115)
                      +|+|||| |..|.++|+.|..+++  ++.++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6899996 9999999999999986  57788754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.83  E-value=0.0012  Score=37.27  Aligned_cols=37  Identities=27%  Similarity=0.518  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR   41 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~   41 (115)
                      .++|+|||+|-+.+-.|++|++.--+|+++-+.+...
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r   70 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR   70 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence            4789999999999999999999999999998877653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.71  E-value=0.0012  Score=39.02  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~   39 (115)
                      -.|+|+|+|+.|+.++..++..|.+ |.+.|.++.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            4689999999999999999999984 666776554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0011  Score=34.15  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.|.|+|||--|-+++....+.|+++.+++-.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5689999999999999999999999999986554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.69  E-value=0.00068  Score=39.42  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -.|+|.|+|+.|+.++..++..|.+|.+++.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            468999999999999999999999999887654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.69  E-value=0.001  Score=40.07  Aligned_cols=33  Identities=33%  Similarity=0.424  Sum_probs=27.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      -.|+|+|+|+.|+.++..++..|. +|.+.+.++
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            478899999999999999988887 677777654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.63  E-value=0.0014  Score=37.85  Aligned_cols=33  Identities=24%  Similarity=0.200  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +|.|||+|-.|.+++..|.+.|+++.+++++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~   34 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHH
Confidence            699999999999999999999999999987643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.57  E-value=0.0017  Score=40.43  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|+|.|| |..|..++..|.++|++|.++.|+...
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            3678999997 999999999999999999999987543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.54  E-value=4.2e-05  Score=47.32  Aligned_cols=35  Identities=14%  Similarity=0.130  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+++|+|||..|+.+|..|++.|.+|+++++.+..
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            57899999999999999999999999999987764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.54  E-value=0.0017  Score=38.38  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGL   40 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~   40 (115)
                      .|+|+|+|+.|+.+...++..|. +|.++|.++..
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            48999999999999999999995 78899976653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0042  Score=34.50  Aligned_cols=38  Identities=18%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             CccccEEEECCCH-----------HHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            3 TVEKDVVIIGAGI-----------AGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         3 ~~~~~v~IvG~G~-----------~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.+.+|+|+|+||           ++.-++..|++.|+++.++.-++..
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            4567899999996           5888888999999999999988875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.0019  Score=37.85  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|+|+|-++-++++.|.+.|. ++.|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4689999999999999999999996 788987753

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0013  Score=40.79  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=28.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|-.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4689999999999999999999998 67788743

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0023  Score=38.30  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=30.0

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|+|.|| |..|..++..|.++|++|.++.|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            46999995 99999999999999999999987653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.46  E-value=0.0022  Score=36.85  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~   39 (115)
                      +|.+||+|-.|...|..|.+.| +++.++++++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            7999999999999999877776 89999988753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.38  E-value=0.0027  Score=39.73  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.+|+|.|| |..|..++..|.++|++|.++.|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            567999997 99999999999999999999987654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.23  E-value=0.0037  Score=35.76  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=26.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCC--ceEEEcC
Q 047339            7 DVVIIG-AGIAGLATALALKRLGI--KPLVLEK   36 (115)
Q Consensus         7 ~v~IvG-~G~~Gl~~A~~l~~~g~--~v~viE~   36 (115)
                      +|.||| +|..|.++|+.+..+++  ++.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            699999 69999999999999986  5777774

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.22  E-value=0.003  Score=37.04  Aligned_cols=33  Identities=30%  Similarity=0.434  Sum_probs=26.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceE-EEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPL-VLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~-viE~~~   38 (115)
                      -+|+|+|+|+.|++++..++..|.++. +.+.++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            469999999999999999999998665 445443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.20  E-value=0.003  Score=37.14  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .|+|+|+|+.|+.+...++..|. +|.+.+.++.
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            58999999999999999999996 6777776654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.18  E-value=0.0023  Score=39.63  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=30.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|+|.|| |..|..++..|.++|++|..+++.+
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            47999998 9999999999999999999998765

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0044  Score=35.53  Aligned_cols=31  Identities=32%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHC-C--CceEEEcCC
Q 047339            7 DVVIIG-AGIAGLATALALKRL-G--IKPLVLEKS   37 (115)
Q Consensus         7 ~v~IvG-~G~~Gl~~A~~l~~~-g--~~v~viE~~   37 (115)
                      +|.||| +|..|.++|+.|..+ +  .++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            799999 599999999988643 4  578888853

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.14  E-value=0.0048  Score=35.85  Aligned_cols=33  Identities=33%  Similarity=0.552  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~   37 (115)
                      ..+++|||+|-+|...+..|...|+ +++|+-|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            4689999999999999999999998 58888765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0039  Score=36.47  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -+.++|+|-|..|-..|..++..|.+|.++|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3579999999999999999999999999999765

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0064  Score=34.06  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             ccccEEEECCCH-----------HHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            4 VEKDVVIIGAGI-----------AGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         4 ~~~~v~IvG~G~-----------~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      ...+|+|+|+||           ++.-+...|++.|+++.++.-++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            457899999997           5888888999999999999988875

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.91  E-value=0.0088  Score=38.39  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++.|+|+|| |..|..++..|.++|++|.++-|+..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4688999996 99999999999999999999977543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0085  Score=35.33  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      ..+|+|+|+|-++-+.++.|.+.|. .+.|+.|++.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            3689999999999999999999987 6778887654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.82  E-value=0.0032  Score=36.37  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=22.4

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLGI   29 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~   29 (115)
                      .+.+|.|||| |..|.++|+.|+..++
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccc
Confidence            3469999996 9999999999998663

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.80  E-value=0.0063  Score=36.60  Aligned_cols=34  Identities=18%  Similarity=0.425  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|+|||+|-+|.-.|..+++.+.+++++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            4689999999999999999999998887775544

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.78  E-value=0.0084  Score=35.58  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIG-AGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+.++|.| +|-.|..+|..|++.|.+|+++.|+..
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            46788888 588899999999999999999988753

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.74  E-value=0.0059  Score=35.67  Aligned_cols=33  Identities=36%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|+|-|..|--.|..|+..|.+|.|.|..|
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            589999999999999999999999999999776

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.71  E-value=0.0057  Score=35.86  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..+|+|+|+|-++-++++.|.+.+.++.|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4589999999999999999999888999998864

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.66  E-value=0.0031  Score=36.41  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=21.6

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHHCC
Q 047339            4 VEKDVVIIGA-GIAGLATALALKRLG   28 (115)
Q Consensus         4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g   28 (115)
                      .+.+|.|||| |..|.++|+.|...+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHH
Confidence            4579999995 999999999998754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.51  E-value=0.0083  Score=35.19  Aligned_cols=32  Identities=31%  Similarity=0.493  Sum_probs=27.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..+|+|+|+|-++-++++.|.+.| ++.|+.|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            468999999999999999998777 88888775

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.47  E-value=0.015  Score=37.36  Aligned_cols=36  Identities=19%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             ccccEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIG-AGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.++|+|.| +|..|..++..|.++|++|+++++...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            346799988 799999999999999999999986443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.40  E-value=0.014  Score=33.84  Aligned_cols=33  Identities=18%  Similarity=0.422  Sum_probs=27.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .|+|+|+|+.|+.++..++..+. +|..++.++.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            58899999999999999999886 5777776654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.38  E-value=0.007  Score=33.60  Aligned_cols=56  Identities=23%  Similarity=0.320  Sum_probs=37.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC----c-ceeeeeCccHHHHHHHcCCh
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG----T-GAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~----~-~~~~~~~~~~~~~l~~~g~~   63 (115)
                      ++++|+|.|..|..++..|.  +.++.++|.++....    . -..+.-.+...+.|++.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~   61 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVR   61 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCT
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhh
Confidence            46999999999999999885  567888887665311    1 11222233345677777665

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.29  E-value=0.014  Score=33.90  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~   39 (115)
                      .|+|+|+|..|++++..++..|. +|.+.+.++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            58999999999999999999985 7777776654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.27  E-value=0.0095  Score=34.49  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=27.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      -.|+|+|+ |+.|+.++..++..|. +|.+.+.++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            46899995 9999999998888884 777887664

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.01  Score=39.74  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|-.|+.+|..|++.|+ +++|+|...
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            3589999999999999999999998 788998644

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.17  E-value=0.014  Score=33.86  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=26.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      -.|+|+|+|+.|+.++..++..|. .|.+.+.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            468899999999999999988885 556667654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.99  E-value=0.022  Score=34.24  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      -..|+|-|-|-+|..+|.+|.+.|.+|++.|.+
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            367999999999999999999999999988754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.024  Score=36.17  Aligned_cols=33  Identities=33%  Similarity=0.600  Sum_probs=28.6

Q ss_pred             ccccEEEEC-CCHHHHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIG-AGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      |..+|+|.| +|..|..++..|.++|++|+++++
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            346789887 489999999999999999999975

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.019  Score=33.32  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=27.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ..|+|.|+ |+.|+.+...++..|++|..+..++
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeccccccccccccccccCcccccccccc
Confidence            35899996 9999999999999999998887544

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.79  E-value=0.026  Score=36.00  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=30.2

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIG-AGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|+|.| +|..|..++..|.++|++|..+++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6799999 679999999999999999999987654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.78  E-value=0.023  Score=34.52  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=28.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC--------------------C-CceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL--------------------G-IKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~--------------------g-~~v~viE~~~   38 (115)
                      -.+|+|||+|-+++-.|..|.+.                    | .+|+++.|..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            36899999999999999999883                    5 4799998764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.70  E-value=0.028  Score=33.90  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             cccEEEECCCHHHHHHHHHHH--------------------HCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALK--------------------RLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~--------------------~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|-+++-.|..|.                    +.|. +|+++-|..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            468999999999999998776                    4564 688887653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.51  E-value=0.024  Score=29.99  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=28.7

Q ss_pred             ccccEEEECCCHHHHHH-HHHHHHCCCceEEEcCC
Q 047339            4 VEKDVVIIGAGIAGLAT-ALALKRLGIKPLVLEKS   37 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~-A~~l~~~g~~v~viE~~   37 (115)
                      ...++-+||-|=+|+.+ |..|.++|+.|+-.|..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            34678899888888777 99999999999988865

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.48  E-value=0.036  Score=32.69  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...+.|||.|..|-.+|..+..-|.+|..+++.+.
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccccccccccccc
Confidence            45799999999999999999999999999997654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.48  E-value=0.0072  Score=33.68  Aligned_cols=36  Identities=17%  Similarity=0.059  Sum_probs=26.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-CCCceE-EEcCCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKR-LGIKPL-VLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~-viE~~~~~   40 (115)
                      ++.++|+|+|-+|..++.++.+ .++++. .+|-++..
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            5789999999999999887654 455554 66766554

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.047  Score=33.51  Aligned_cols=38  Identities=32%  Similarity=0.443  Sum_probs=29.1

Q ss_pred             CCCccccEEEE--CCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVII--GAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~Iv--G~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |...+-++++|  |++-.|...|..|+++|++|.+.++++
T Consensus         1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            44445556665  455669999999999999999999765

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.38  E-value=0.02  Score=33.25  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=27.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .|+|.|+ |+.|+.+...++..|.+|...+.++.
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEEEeccccchhhhhhhhccccccccccccccc
Confidence            4778795 99999999999999999988876543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.33  E-value=0.032  Score=32.56  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=24.7

Q ss_pred             cccEEEECCCHHHHHHHHH--HHH-C---CCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALA--LKR-L---GIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~--l~~-~---g~~v~viE~~~~   39 (115)
                      ..+|.|||+|.+|.+.++.  +.+ .   +.++.++|.++.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            4589999999999876652  222 2   358899987643

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.25  E-value=0.028  Score=34.21  Aligned_cols=35  Identities=26%  Similarity=0.238  Sum_probs=29.2

Q ss_pred             ccEEEECCCHH-HHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIA-GLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~-Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+|+|.||+-. |..+|..|+++|++|.++++++..
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            36888887654 999999999999999999987653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.24  E-value=0.041  Score=33.75  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             CCCccccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |.-..+.++|.||+- .|..+|..|++.|++|.+.+++.
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            444445677777644 69999999999999999999865

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.14  E-value=0.036  Score=31.95  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIK-PLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~   38 (115)
                      .|+|.|+|..|+.+...++..|.. |.+.+.++
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            578999999999999999999965 55555443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.07  E-value=0.03  Score=34.68  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             cccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVIIGAGI-AGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      .+.++|.||+- .|..+|..|+++|++|.+.+++...
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            35567778765 5999999999999999999987653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.97  E-value=0.045  Score=32.09  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=20.7

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLG   28 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g   28 (115)
                      ..+|.|+|| |..|..+++.|++..
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~   48 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGE   48 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCc
Confidence            357999996 999999999998754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.041  Score=34.99  Aligned_cols=30  Identities=27%  Similarity=0.499  Sum_probs=26.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEEcC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +|+|.|| |..|.-++..|.+.|++|.++++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            5888875 88999999999999999999975

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.96  E-value=0.049  Score=34.00  Aligned_cols=39  Identities=31%  Similarity=0.270  Sum_probs=30.1

Q ss_pred             CCCccccEEEECCC-HHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAG-IAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G-~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+-.-+.++|.||+ -.|..+|..|++.|++|.+.++++.
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            44334567787874 4599999999999999999988643

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.90  E-value=0.043  Score=33.39  Aligned_cols=35  Identities=11%  Similarity=0.105  Sum_probs=29.3

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.|+|.||+- .|..+|..|+++|++|.++++....
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            5688999854 5999999999999999999876553

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.89  E-value=0.1  Score=31.81  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=32.6

Q ss_pred             cccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339            5 EKDVVIIGAGI-AGLATALALKRLGIKPLVLEKSDGLRGTGAAI   47 (115)
Q Consensus         5 ~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~   47 (115)
                      .+.++|.||+- .|..+|..|++.|++|.+.+++.........+
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~   50 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGV   50 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEE
Confidence            35567777764 59999999999999999999987754444443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.047  Score=34.41  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=27.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +++|+|.|| |..|..++..|.++|++|+.+++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            467888876 78999999999999999999874

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.82  E-value=0.052  Score=32.69  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=28.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.++|.|| +-.|...|..|+++|++|.+.++++..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            45677776 445999999999999999999987653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.80  E-value=0.07  Score=31.83  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...|.|||.|..|..+|..|..-|.+|..++....
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            46799999999999999999999999999986543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.77  E-value=0.045  Score=33.80  Aligned_cols=34  Identities=15%  Similarity=0.104  Sum_probs=28.2

Q ss_pred             ccEEEECC-C--HHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGA-G--IAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~-G--~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.++|.|| |  =.|...|..|+++|++|.+.++++.
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56788885 2  2599999999999999999998754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.77  E-value=0.073  Score=31.74  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...|.|||.|-.|..+|..|+.-|.+|..+++...
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccc
Confidence            46799999999999999999999999999997544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.76  E-value=0.04  Score=34.03  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             CCCccccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            1 METVEKDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         1 m~~~~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |.-..+.++|.||+- .|..+|..|+++|++|.+.+++.
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            443345677888744 49999999999999999999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.73  E-value=0.065  Score=33.03  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             CCCccccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            1 METVEKDVVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         1 m~~~~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+-.-+.++|.||+- .|..+|..|++.|.+|.++.+...
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            443445677888764 599999999999999988865543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.058  Score=33.30  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=26.5

Q ss_pred             ccEEEECCCHH-HHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIA-GLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~-Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +-++|.||+-. |..+|..|+++|++|.+.+++.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34667776544 8999999999999999998765

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.50  E-value=0.065  Score=33.55  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=28.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.|+|.|| |..|..++..|.++|++|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            35788886 88999999999999999999887543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.048  Score=33.35  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=27.1

Q ss_pred             ccEEEECCCH---HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGI---AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~---~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.++|.||+-   -|...|..|++.|++|.+..+++.
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4577777643   478999999999999999988754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.055  Score=31.51  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             cccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -++++|||.+. .|.-+|.+|.+.|..|++.....
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            47899999887 79999999999999999987543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.36  E-value=0.058  Score=33.63  Aligned_cols=33  Identities=30%  Similarity=0.188  Sum_probs=27.1

Q ss_pred             ccccEEEECCC---HHHHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIGAG---IAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG~G---~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      ..+.++|.|++   -.|...|..|+++|.+|.+..+
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            34678888964   3699999999999999998865

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.074  Score=32.53  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             cccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -+.++|.||+- .|..+|..|++.|++|.+.++++
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35677888754 59999999999999999998764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.059  Score=33.12  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=26.9

Q ss_pred             cEEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -++|.||+- .|..+|..|+++|.+|.+.+++..
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            355667766 499999999999999999998753

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.043  Score=37.67  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..+|+|||+|..|+.+|..|...|+ +++|+|...
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            4589999999999999999999997 688887543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.15  E-value=0.069  Score=33.85  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=27.0

Q ss_pred             ccEEEECCCHH-HHHHHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIA-GLATALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~-Gl~~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.++|.||+-. |...|..|+++|++|.+.+++...
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~   43 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF   43 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence            34556666553 889999999999999999876554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.09  E-value=0.091  Score=31.19  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ..+.|||.|-.|-.+|..|..-|.+|..+++...
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCccc
Confidence            5799999999999999999999999999987544

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.073  Score=32.41  Aligned_cols=32  Identities=34%  Similarity=0.450  Sum_probs=26.2

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            8 VVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         8 v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|.||+- .|..+|..|+++|++|.+.+++..
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            45677655 489999999999999999998764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.99  E-value=0.06  Score=31.50  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=27.6

Q ss_pred             ccEEEECCC-HHHHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAG-IAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G-~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ++++|||-+ .+|.-+|..|+++|..|++...+
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            689999955 67999999999999999988643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.092  Score=32.11  Aligned_cols=33  Identities=27%  Similarity=0.501  Sum_probs=27.1

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|...|..|++.|++|.+.++++
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4567777765 38999999999999999998764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.95  E-value=0.063  Score=32.93  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=27.0

Q ss_pred             ccEEEECCC---HHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAG---IAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G---~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.++|.|++   =.|...|..|++.|++|.+..+++.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            457788853   2599999999999999988877643

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.93  E-value=0.11  Score=30.61  Aligned_cols=30  Identities=23%  Similarity=0.249  Sum_probs=25.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEE
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVL   34 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~vi   34 (115)
                      +++|+|.|| |..|-.+...|.++|+.+.|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            468999999 999999999999999754444

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.82  E-value=0.1  Score=32.10  Aligned_cols=32  Identities=34%  Similarity=0.485  Sum_probs=26.3

Q ss_pred             cE-EEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DV-VIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v-~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +| +|.||+- .|...|..|++.|++|.+.++++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55 5667654 59999999999999999999864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.76  E-value=0.1  Score=32.85  Aligned_cols=33  Identities=24%  Similarity=0.164  Sum_probs=27.8

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIG-AGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.| .|..|..++..|.++|++|..+++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4566666 59999999999999999999998743

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.68  E-value=0.07  Score=32.71  Aligned_cols=33  Identities=12%  Similarity=0.134  Sum_probs=26.3

Q ss_pred             ccEEEECC-CH--HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGA-GI--AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~-G~--~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.|+ |-  .|...|..|++.|++|.+..++.
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            56788884 32  58999999999999999987654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.67  E-value=0.094  Score=32.19  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=26.3

Q ss_pred             cEEEECCC-HHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            7 DVVIIGAG-IAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         7 ~v~IvG~G-~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .++|.||+ -.|..+|..|+++|++|.+.++++.
T Consensus         7 ~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45666753 4489999999999999999998754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.56  E-value=0.084  Score=32.69  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=25.4

Q ss_pred             cEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -++|.||+- .|..+|..|+++|++|.+.+++.
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455666543 59999999999999999998764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.16  Score=29.82  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...+.|+|.|..|-.+|..+..-|.+|..+++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            46799999999999999999999999999997544

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.54  E-value=0.086  Score=34.08  Aligned_cols=29  Identities=34%  Similarity=0.594  Sum_probs=26.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEEc
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      +|+|.|| |..|..++..|.+.|++|.++|
T Consensus         3 kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           3 RVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            6888875 8899999999999999999986

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.53  E-value=0.097  Score=31.88  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=29.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      .+.+|++.|+|.+|+-.|..+...+. ++.++|+.-
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            35689999999999999999988875 677888753

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.51  E-value=0.04  Score=32.06  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             cccEEEECCCHHHHH--HHHHHHH-CC---CceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLA--TALALKR-LG---IKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~--~A~~l~~-~g---~~v~viE~~~~   39 (115)
                      +.+|+|||||.+|..  .+..+.. ..   -++.++|.++.
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~   41 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEG   41 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGG
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCcc
Confidence            358999999966533  3333333 22   37778876543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.093  Score=30.62  Aligned_cols=34  Identities=12%  Similarity=0.086  Sum_probs=29.5

Q ss_pred             cccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            5 EKDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -++++|||.+. .|.-+|.+|.++|..|+++....
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            46899999865 79999999999999999997643

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.059  Score=33.42  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=27.1

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|..+|..|+++|.+|.+..++.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3467777765 49999999999999999998864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.38  E-value=0.094  Score=32.23  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|...|..|+++|++|.+.+++.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4567888754 49999999999999999998764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.29  Score=24.51  Aligned_cols=31  Identities=26%  Similarity=0.484  Sum_probs=24.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      ..|+|.|+ |-+|..+...++..|++|...-.
T Consensus        33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~   64 (77)
T d1o8ca2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSG   64 (77)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC
Confidence            45778777 88899888888889998876543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.20  E-value=0.071  Score=31.44  Aligned_cols=30  Identities=27%  Similarity=0.209  Sum_probs=25.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEc
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      +.|+|.|| |..|..++..|.++|++|.++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            57999994 9999999999999998877654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=92.17  E-value=0.15  Score=29.87  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...+.|||.|-.|...|..|..-|.+|..+++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            45799999999999999999999999999987643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.16  E-value=0.1  Score=31.62  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=28.1

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.++|.||+- .|...|..|++.|++|.+.++++.
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4578888754 599999999999999999998653

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=92.13  E-value=0.13  Score=27.05  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=29.0

Q ss_pred             ccccEEEECCCHH---------HHHHHHHHHHCCCceEEEcCCCC
Q 047339            4 VEKDVVIIGAGIA---------GLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         4 ~~~~v~IvG~G~~---------Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+.+|+|+-||++         |......|.+.+++|..+|-...
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~   45 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV   45 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccc
Confidence            4567999999986         67777788889999999986543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.09  E-value=0.11  Score=32.11  Aligned_cols=33  Identities=36%  Similarity=0.446  Sum_probs=27.0

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|..+|..|+++|++|.+.+++.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3466778764 49999999999999999999865

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.09  E-value=0.11  Score=32.08  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=27.3

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|..+|..|+++|++|.+.+++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4567888764 48999999999999999999765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.11  Score=31.94  Aligned_cols=32  Identities=28%  Similarity=0.192  Sum_probs=25.9

Q ss_pred             cEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      -++|.||+- .|..+|..|+++|.+|.+.+++.
T Consensus         5 valITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356667644 59999999999999999998764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.07  E-value=0.1  Score=29.39  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=25.1

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCC---ceEEEcC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGI---KPLVLEK   36 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~---~v~viE~   36 (115)
                      +.+|.|||+ |.+|..+...|.++++   ++..+-.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s   37 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS   37 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence            468999998 9999999999987654   5555543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.04  E-value=0.11  Score=32.06  Aligned_cols=33  Identities=39%  Similarity=0.475  Sum_probs=26.8

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|..+|..|++.|++|.+.++++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3466777754 48999999999999999998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.04  E-value=0.13  Score=32.02  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIG-AGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|.| ++-.|..+|..|+++|++|.+.+++.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            355555 45569999999999999999999865

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.95  E-value=0.09  Score=33.42  Aligned_cols=29  Identities=21%  Similarity=0.229  Sum_probs=25.0

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHCCCceEEE
Q 047339            6 KDVVIIG-AGIAGLATALALKRLGIKPLVL   34 (115)
Q Consensus         6 ~~v~IvG-~G~~Gl~~A~~l~~~g~~v~vi   34 (115)
                      ++|+|.| +|..|..++..|.+.|++|.++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            5799999 7999999999999999876554

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.13  Score=32.93  Aligned_cols=31  Identities=23%  Similarity=0.207  Sum_probs=26.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            7 DVVIIG-AGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         7 ~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .++|.| +|..|.-++..|.+.|++|..+++.
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            456878 7999999999999999999999874

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.84  E-value=0.16  Score=31.05  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ...|+|-|-|-+|..+|.+|.+.|.++++.+-+
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            467999999999999999999999999987643

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.84  E-value=0.17  Score=29.69  Aligned_cols=33  Identities=42%  Similarity=0.443  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .+.|+|||-|.-|-.=|+-|+..|++|.|==|.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~   48 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence            468999999999999999999999999886543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.73  E-value=0.044  Score=31.60  Aligned_cols=32  Identities=9%  Similarity=0.053  Sum_probs=21.7

Q ss_pred             cEEEECCCHHHHHHHHHHH--HC----CCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALK--RL----GIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~--~~----g~~v~viE~~~   38 (115)
                      +|+|||||..|...++...  ..    .-++.++|.++
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~   39 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE   39 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence            7999999987766665322  21    24788988653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.72  E-value=0.15  Score=32.26  Aligned_cols=32  Identities=31%  Similarity=0.334  Sum_probs=27.5

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHHCCCceEEEcC
Q 047339            5 EKDVVIIG-AGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         5 ~~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      ++.|+|.| +|..|..++..|.+.|++|..+++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            45677766 599999999999999999999975

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.14  Score=31.46  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=26.6

Q ss_pred             ccEEEECCC-HHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAG-IAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G-~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+ =.|..+|..|++.|++|.+.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            346677764 348999999999999999998764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.39  E-value=0.076  Score=32.64  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=24.6

Q ss_pred             ccEEEECCCHHH-----HHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGIAG-----LATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~~G-----l~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.|+|.|=|=+|     ..+|+.|++.|++|+++|..+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            457788833334     3346688889999999998765

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.18  Score=31.80  Aligned_cols=32  Identities=25%  Similarity=0.300  Sum_probs=26.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLG-IKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g-~~v~viE~~~   38 (115)
                      +|+|.|| |..|..++..|.++| .+|..+++..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            6888887 889999999998888 5888887643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.14  Score=32.29  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=26.3

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|..+|..|++.|++|.+.+++.
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3466777654 48999999999999999998764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=91.33  E-value=0.17  Score=30.90  Aligned_cols=34  Identities=24%  Similarity=0.158  Sum_probs=26.8

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +-++|.||+- .|..+|..|++.|++|.+.++++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            3456667643 589999999999999999998653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.24  E-value=0.25  Score=30.28  Aligned_cols=31  Identities=29%  Similarity=0.332  Sum_probs=24.4

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            8 VVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         8 v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++|.||+- .|...|..|++.|++|.+.++++
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            44445543 58899999999999999998764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.14  E-value=0.11  Score=31.83  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=26.1

Q ss_pred             ccEEEECCC-HHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAG-IAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G-~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +-++|.||+ =.|..+|..|+++|++|.+.+++.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            335566774 358999999999999999999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.11  E-value=0.2  Score=30.84  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=27.2

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|..+|..|++.|++|.+.++++
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4467778764 59999999999999999999864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=0.1  Score=32.08  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=25.4

Q ss_pred             ccEEEECCC-HHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAG-IAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G-~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+ -.|..+|..|++.|++|.+.+++.
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            345555553 358999999999999999999764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.81  E-value=0.14  Score=28.93  Aligned_cols=31  Identities=29%  Similarity=0.243  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +|.+||-|..|...|..|.+.|+.+ ++.+..
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~   32 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTF   32 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSST
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCH
Confidence            5889999999999999999988865 555443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.76  E-value=0.18  Score=30.84  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=26.6

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|...|..|++.|++|.+.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3456667744 59999999999999999999865

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.67  E-value=0.12  Score=29.85  Aligned_cols=31  Identities=29%  Similarity=0.325  Sum_probs=25.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEEcCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .|+|.|| |..|+.+...+...|.+|.+..++
T Consensus        28 ~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             EEEEECCCCCcccccchhhccccccceeeecc
Confidence            4667685 999999999999999998877654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=90.63  E-value=0.19  Score=31.28  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=25.8

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCceEEEcC
Q 047339            7 DVVIIG-AGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         7 ~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +|+|.| +|..|..+...|.++|++|..+++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            577765 589999999999999999999874

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.12  Score=31.51  Aligned_cols=32  Identities=28%  Similarity=0.299  Sum_probs=25.2

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            8 VVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         8 v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|.||+- .|...|..|++.|++|.+.++++.
T Consensus         7 alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            45556543 489999999999999999998753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.61  E-value=0.12  Score=31.95  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|..+|..|++.|++|.+.++++
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4455666554 48899999999999999999875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.60  E-value=0.24  Score=30.32  Aligned_cols=32  Identities=28%  Similarity=0.502  Sum_probs=25.4

Q ss_pred             cE-EEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DV-VIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v-~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +| +|-||+- .|...|..|+++|++|.+.++++
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45 4556643 59999999999999999998764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.56  E-value=0.11  Score=32.14  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=25.6

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||+- .|..+|..|+++|++|.+.+++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3455666544 48899999999999999998764

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=90.54  E-value=0.15  Score=31.75  Aligned_cols=35  Identities=34%  Similarity=0.459  Sum_probs=29.2

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +++|+|.|| |..|..++..|.++|+.+.+++....
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~   37 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE   37 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh
Confidence            467999886 89999999999999999888865443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.51  E-value=0.19  Score=30.54  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=27.8

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      +.++|.||+- .|...|..|+++|++|.+..++..
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4567777765 599999999999999999987653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.49  E-value=0.33  Score=28.32  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...+.|+|.|..|...|..+..-|.+|..+++...
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            46789999999999999999999999999986543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.46  E-value=0.12  Score=32.14  Aligned_cols=32  Identities=19%  Similarity=0.391  Sum_probs=25.3

Q ss_pred             cEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|.||+- .|...|..|++.|++|.+.+++.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           6 SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455666643 48899999999999999998764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.33  E-value=0.25  Score=30.35  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=27.6

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.||.- .|...|..|++.|++|.+.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4578888544 58899999999999999999865

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.1  Score=33.12  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=26.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC----CC-------ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL----GI-------KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~-------~v~viE~~   37 (115)
                      +.+|+|.|+|.+|+..|..+...    |.       ++.++|++
T Consensus        25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~   68 (294)
T d1pj3a1          25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY   68 (294)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETT
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCC
Confidence            46899999999999999886654    33       58888864

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.23  E-value=0.21  Score=30.61  Aligned_cols=31  Identities=35%  Similarity=0.460  Sum_probs=27.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      ..+|+|-|-|-+|..+|.+|.+.|.+|+-+.
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            4689999999999999999999999987554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.18  E-value=0.14  Score=31.60  Aligned_cols=32  Identities=28%  Similarity=0.254  Sum_probs=24.7

Q ss_pred             cEE-EECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVV-IIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~-IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++ |.|| +-.|...|..|+++|++|.+..++.
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            444 4454 3458999999999999999998764

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.10  E-value=0.25  Score=27.97  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=22.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCce
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKP   31 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v   31 (115)
                      ++|.|||+ |.+|..+-..|.++.+++
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~   28 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPI   28 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCc
Confidence            57999999 999999999998886543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.11  Score=29.97  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=26.5

Q ss_pred             ccEEEE-CCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            6 KDVVII-GAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~Iv-G~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      -.|+|. |+|..|+.+...++..|.+|...+.++.
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~   64 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ   64 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence            357787 5555899999988889999999876653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.91  E-value=0.2  Score=30.31  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=25.7

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            8 VVIIGA-GIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         8 v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      |+|.|| +-.|...|..|++.|++|.+.++++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            456675 34699999999999999999987653

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=89.90  E-value=0.34  Score=28.51  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...+.|||.|-.|...|..+..-|.+|..++....
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             ccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            36789999999999999999999999999986543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=89.90  E-value=0.14  Score=32.70  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=25.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC----CC-------ceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL----GI-------KPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~-------~v~viE~~   37 (115)
                      +.+|+|.|+|.+|+..|..+...    |.       ++.++|++
T Consensus        25 d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~   68 (308)
T d1o0sa1          25 QEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID   68 (308)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred             HcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence            56899999999999988877653    32       48888854

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.82  E-value=0.29  Score=25.36  Aligned_cols=31  Identities=23%  Similarity=0.259  Sum_probs=26.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            7 DVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      +|+|||+|----+.|+.|++....+.++--+
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~pGN   32 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFYPGN   32 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEecCC
Confidence            7999999999999999999988877776433

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.77  E-value=0.15  Score=31.28  Aligned_cols=32  Identities=19%  Similarity=0.222  Sum_probs=24.7

Q ss_pred             cEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|.||+- .|...|..|+++|++|.+.++++
T Consensus         8 ~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           8 VALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            344556543 48899999999999999998764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.52  E-value=0.48  Score=24.33  Aligned_cols=45  Identities=20%  Similarity=0.219  Sum_probs=32.7

Q ss_pred             cEEEECCCHHHHH-HHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339            7 DVVIIGAGIAGLA-TALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS   63 (115)
Q Consensus         7 ~v~IvG~G~~Gl~-~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (115)
                      +|=+||=|=+|++ +|..|.++|+.|.-.|+..            ....+.|+.+|+.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~------------~~~t~~L~~~Gi~   48 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE------------TERTAYLRKLGIP   48 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC------------CHHHHHHHHTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC------------ChhHHHHHHCCCe
Confidence            5667777777774 4899999999999888653            1244568888864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=89.45  E-value=0.069  Score=30.81  Aligned_cols=31  Identities=19%  Similarity=0.064  Sum_probs=24.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..+|+.+|||..-  .|.+|+++|++|+-+|-+
T Consensus        21 ~~rvLd~GCG~G~--~a~~la~~G~~V~gvD~S   51 (201)
T d1pjza_          21 GARVLVPLCGKSQ--DMSWLSGQGYHVVGAELS   51 (201)
T ss_dssp             TCEEEETTTCCSH--HHHHHHHHCCEEEEEEEC
T ss_pred             CCEEEEecCcCCH--HHHHHHHcCCceEeeccc
Confidence            3579999999964  455778899999999844

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=89.30  E-value=0.36  Score=29.56  Aligned_cols=30  Identities=23%  Similarity=0.221  Sum_probs=23.6

Q ss_pred             EEEE-CC-CHHHHHHHHHHHHCCCceEEEcCC
Q 047339            8 VVII-GA-GIAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         8 v~Iv-G~-G~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      |+|| || +-.|...|..|++.|++|.+..+.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            5555 55 456999999999999999987654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.26  E-value=0.35  Score=29.69  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             cEE-EECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVV-IIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~-IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +++ |.|| +-.|...|..|+++|++|.+.+++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            454 4454 3448999999999999999998864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.26  E-value=0.17  Score=30.95  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=24.7

Q ss_pred             cEEEECCCH-HHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGAGI-AGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .++|.||+- .|...|..|++.|++|.+.+++.
T Consensus         8 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           8 VAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            344556443 48899999999999999998764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.99  E-value=0.32  Score=29.67  Aligned_cols=36  Identities=33%  Similarity=0.313  Sum_probs=26.2

Q ss_pred             CccccEEEE-CCC-HHHHHHHHHHHH---CCCceEEEcCCC
Q 047339            3 TVEKDVVII-GAG-IAGLATALALKR---LGIKPLVLEKSD   38 (115)
Q Consensus         3 ~~~~~v~Iv-G~G-~~Gl~~A~~l~~---~g~~v~viE~~~   38 (115)
                      .++-+|+|| ||+ -.|..+|..|++   +|++|.+..++.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            345677777 543 347788888886   689999998765

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.30  E-value=0.36  Score=28.80  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339            5 EKDVVIIGA-GIAGLATALALKRLGI--KPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~--~v~viE~~~~   39 (115)
                      +.+|+|.|| |..|..+...|.++|.  +|.++.|++.
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            457898886 8999999999988884  8999988654

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=88.23  E-value=0.16  Score=31.04  Aligned_cols=28  Identities=18%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEE
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVL   34 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~vi   34 (115)
                      +|+|.|| |..|..+...|.+.|..|.+.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v~~~   30 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLIALD   30 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence            6999997 999999999999988755443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=88.18  E-value=0.075  Score=33.97  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~   39 (115)
                      +.+|+|||+|-.++... .++. ...+|+++|-++.
T Consensus        78 pk~VLiiG~G~G~~~~~-ll~~~~~~~v~~VEiD~~  112 (312)
T d1uira_          78 PKRVLIVGGGEGATLRE-VLKHPTVEKAVMVDIDGE  112 (312)
T ss_dssp             CCEEEEEECTTSHHHHH-HTTSTTCCEEEEEESCHH
T ss_pred             cceEEEeCCCchHHHHH-HHhcCCcceEEEecCCHH
Confidence            56899999998544433 3333 3468999997654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.16  E-value=0.3  Score=30.06  Aligned_cols=33  Identities=30%  Similarity=0.307  Sum_probs=24.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      +.++|.|| +-.|...|..|+++|++|.+.+++.
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            34556664 3348899999999999999988653

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=88.14  E-value=0.16  Score=29.45  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=21.5

Q ss_pred             cccEEEECCCHHHHHHHH--HHH-HCC---CceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATAL--ALK-RLG---IKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~--~l~-~~g---~~v~viE~~~   38 (115)
                      .++|+|||||.+|...+.  .+. ...   -++.++|-++
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~   42 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK   42 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh
Confidence            468999999987644332  222 222   3688888654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=87.89  E-value=0.1  Score=29.26  Aligned_cols=31  Identities=19%  Similarity=0.079  Sum_probs=22.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            8 VVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      |-+||.|-.|..+|..|++.+.-+.|+.|+.
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~   32 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSI   32 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSH
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            4589999999999998876555456887654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.89  E-value=0.42  Score=30.17  Aligned_cols=31  Identities=29%  Similarity=0.450  Sum_probs=27.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      ...|+|-|-|-+|..+|..|.+.|.+|+-+.
T Consensus        36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            3579999999999999999999999987664

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.52  Score=29.52  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             ccE-EEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDV-VIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v-~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      ++| +|.|| |..|.-++..|.++|++|..+++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            367 67665 6899999999999999999998754

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.57  E-value=0.48  Score=29.86  Aligned_cols=30  Identities=23%  Similarity=0.181  Sum_probs=25.1

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCceEEEc
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      ..|+|.|| |..|.-++..|.++|++|..+-
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~v   42 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTA   42 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            47888876 7799999999999999987643

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.44  E-value=0.28  Score=29.74  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=25.5

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            8 VVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         8 v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .+|-||+- .|...|..|+++|++|.+.+++..
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~   36 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSE   36 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            35556544 599999999999999999998753

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.14  E-value=0.13  Score=32.22  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=22.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+.+|+|+|+|-.+... ..++....+|+++|-++
T Consensus        72 ~p~~vLiiG~G~G~~~~-~~l~~~~~~v~~VEiD~  105 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVR-EVLQHDVDEVIMVEIDE  105 (276)
T ss_dssp             CCCEEEEEECTTSHHHH-HHTTSCCSEEEEEESCH
T ss_pred             CCceEEEecCCchHHHH-HHHHhCCceEEEecCCH
Confidence            35789999999855443 33443345788888654

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=87.03  E-value=0.37  Score=30.26  Aligned_cols=29  Identities=21%  Similarity=0.279  Sum_probs=25.0

Q ss_pred             cEEEECCCH-----HHHHHHHHHHHCCCceEEEc
Q 047339            7 DVVIIGAGI-----AGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         7 ~v~IvG~G~-----~Gl~~A~~l~~~g~~v~viE   35 (115)
                      +|+|.+.|-     -.+.+|..|.++|++|+++-
T Consensus         2 kil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~   35 (401)
T d1iira_           2 RVLLATCGSRGDTEPLVALAVRVRDLGADVRMCA   35 (401)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence            688888885     47889999999999999884

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=87.00  E-value=0.39  Score=30.39  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=26.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC----C-------CceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL----G-------IKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~----g-------~~v~viE~~~   38 (115)
                      +.+|+|.|+|.+|+..|..+...    |       .++.++|++-
T Consensus        25 d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kG   69 (298)
T d1gq2a1          25 DHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKG   69 (298)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTE
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCC
Confidence            56899999999999988877643    3       3688888643

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.74  E-value=0.33  Score=29.53  Aligned_cols=30  Identities=43%  Similarity=0.441  Sum_probs=22.0

Q ss_pred             EEEECCC-HHHHHHHHHHHHCCCceEEEcCC
Q 047339            8 VVIIGAG-IAGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         8 v~IvG~G-~~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ++|.||+ -.|..+|..|++.|++|.+.+.+
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~~   34 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYAR   34 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3444543 34899999999999999886543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.44  E-value=0.46  Score=28.76  Aligned_cols=31  Identities=29%  Similarity=0.425  Sum_probs=23.5

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCc-------eEEEcCCC
Q 047339            8 VVIIGAGI-AGLATALALKRLGIK-------PLVLEKSD   38 (115)
Q Consensus         8 v~IvG~G~-~Gl~~A~~l~~~g~~-------v~viE~~~   38 (115)
                      ++|.||+- .|..+|..|+++|++       |.+..++.
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            34667754 499999999999988       77777654

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=86.31  E-value=0.59  Score=28.39  Aligned_cols=29  Identities=34%  Similarity=0.599  Sum_probs=23.5

Q ss_pred             EEEEC-CCHHHHHHHHHHHHCCC-ceEEEcC
Q 047339            8 VVIIG-AGIAGLATALALKRLGI-KPLVLEK   36 (115)
Q Consensus         8 v~IvG-~G~~Gl~~A~~l~~~g~-~v~viE~   36 (115)
                      |+|.| +|..|..++..|.++|+ +|++++.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            55655 57899999999999995 7988873

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.26  E-value=0.76  Score=25.83  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=26.8

Q ss_pred             cccEEEECCCHHH---HHHHHHHHHCCCceEEEcC
Q 047339            5 EKDVVIIGAGIAG---LATALALKRLGIKPLVLEK   36 (115)
Q Consensus         5 ~~~v~IvG~G~~G---l~~A~~l~~~g~~v~viE~   36 (115)
                      ..|++|+++|..-   +-+|..|.+.|+++.|+..
T Consensus        20 ~pdvtiiAsGsev~~AleAa~~L~~~GI~v~Vvs~   54 (146)
T d1gpua3          20 NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSL   54 (146)
T ss_dssp             SCSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHHHhhccCccEEEe
Confidence            4699999999874   6778888889999999864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.25  E-value=0.37  Score=29.44  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             cEEEECCCH-HHHHHHHHHHHCCCceEEEcCC
Q 047339            7 DVVIIGAGI-AGLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         7 ~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .++|.||+- .|...|..|++.|++|.+..+.
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            355666544 5899999999999999986543

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.18  E-value=0.48  Score=30.23  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=24.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCce-EEEcC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKP-LVLEK   36 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v-~viE~   36 (115)
                      +|+|.|| |..|..++..|.+.|+.+ ..++.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            5788875 889999999999999975 44554

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.12  E-value=0.91  Score=28.92  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=25.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHH-CCCceEEEcC
Q 047339            6 KDVVIIGA-GIAGLATALALKR-LGIKPLVLEK   36 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~-~g~~v~viE~   36 (115)
                      ++|+|.|| |..|..++..|.+ .|++|+++|+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            37888775 8899999987764 7999999985

>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Escherichia coli [TaxId: 562]

Probab=85.99  E-value=0.37  Score=26.59  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=26.7

Q ss_pred             cccEEEECCCHH---HHHHHHHHHHCCCceEEEcCC
Q 047339            5 EKDVVIIGAGIA---GLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         5 ~~~v~IvG~G~~---Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      ..|++|++.|..   .+-+|..|.+.|+++.|+.-.
T Consensus        22 ~~dv~iiasGs~v~~aleAa~~L~~~gI~~~Vi~~~   57 (136)
T d2r8oa3          22 QPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMP   57 (136)
T ss_dssp             SCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCCEEEEeeccchHHHHHHHHHHHhcCCCceEeech
Confidence            469999999987   445777888899999999643

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=85.86  E-value=0.16  Score=31.73  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~   38 (115)
                      +.+|+|||+|-.+ ++...++..+ .+|+++|-++
T Consensus        76 p~~vLiiGgG~G~-~~~~~l~~~~~~~i~~VEID~  109 (274)
T d1iy9a_          76 PEHVLVVGGGDGG-VIREILKHPSVKKATLVDIDG  109 (274)
T ss_dssp             CCEEEEESCTTCH-HHHHHTTCTTCSEEEEEESCH
T ss_pred             cceEEecCCCCcH-HHHHHHhcCCcceEEEecCCH
Confidence            5789999999844 4444444444 5788888554

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=0.36  Score=30.30  Aligned_cols=31  Identities=29%  Similarity=0.499  Sum_probs=22.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~   38 (115)
                      ..|+-||+|. |+ +++.++++|. +|..+|.++
T Consensus        37 ~~VLDiGcG~-G~-lsl~aa~~Ga~~V~aid~s~   68 (311)
T d2fyta1          37 KVVLDVGCGT-GI-LSMFAAKAGAKKVLGVDQSE   68 (311)
T ss_dssp             CEEEEETCTT-SH-HHHHHHHTTCSEEEEEESST
T ss_pred             CEEEEECCCC-CH-HHHHHHHcCCCEEEEEeCHH
Confidence            4588999996 44 3556778885 687887653

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.74  E-value=0.35  Score=29.33  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=22.8

Q ss_pred             ccEEEECCCHH-HHHHHHHHHHCCCc--eEEEcCCC
Q 047339            6 KDVVIIGAGIA-GLATALALKRLGIK--PLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~-Gl~~A~~l~~~g~~--v~viE~~~   38 (115)
                      +.|+|.||.-. |..+|..|+++|..  |.+..|+.
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~   39 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            45666676543 78889999999964  55555554

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=2  Score=25.69  Aligned_cols=29  Identities=24%  Similarity=0.256  Sum_probs=24.5

Q ss_pred             ECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339           11 IGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus        11 vG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      --+|-.|..+|..+.++|++|+++--...
T Consensus        29 ~SSGk~G~aiA~~~~~~Ga~V~li~g~~~   57 (223)
T d1u7za_          29 HSSGKMGFAIAAAAARRGANVTLVSGPVS   57 (223)
T ss_dssp             CCCSHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred             CCcHHHHHHHHHHHHHcCCchhhhhcccc
Confidence            34678899999999999999999976444

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.16  E-value=0.22  Score=30.43  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=25.8

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCceEEEcCCCC
Q 047339            8 VVIIGAGI-AGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         8 v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ++|-||+- .|...|..|++.|++|.+.+++..
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~   35 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFK   35 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56667654 499999999999999999887543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.80  E-value=0.35  Score=29.03  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=25.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~   39 (115)
                      ...|+.||+|. |..+|+.....|-.|+.+|..+.
T Consensus        79 g~~VLeIGsGs-GY~taila~l~g~~V~~ie~~~~  112 (215)
T d1jg1a_          79 GMNILEVGTGS-GWNAALISEIVKTDVYTIERIPE  112 (215)
T ss_dssp             TCCEEEECCTT-SHHHHHHHHHHCSCEEEEESCHH
T ss_pred             cceEEEecCCC-ChhHHHHHHhhCceeEEEeccHH
Confidence            34799999998 77777666555777888887653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.65  E-value=0.16  Score=32.11  Aligned_cols=34  Identities=32%  Similarity=0.318  Sum_probs=22.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~   38 (115)
                      .+.+|+|||+|-.++. ...++.. ..+|+++|-++
T Consensus        89 ~pk~VLiiGgG~G~~~-r~~l~~~~~~~i~~VEIDp  123 (295)
T d1inla_          89 NPKKVLIIGGGDGGTL-REVLKHDSVEKAILCEVDG  123 (295)
T ss_dssp             SCCEEEEEECTTCHHH-HHHTTSTTCSEEEEEESCH
T ss_pred             CCceEEEecCCchHHH-HHHHhcCCCceEEEecCCH
Confidence            3578999999985543 3333333 35788888664

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.51  E-value=0.75  Score=25.11  Aligned_cols=32  Identities=34%  Similarity=0.492  Sum_probs=26.1

Q ss_pred             ccEEEECCCHH---HHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAGIA---GLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G~~---Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .|++||..|..   .+-+|..|.+.|+++.|++-.
T Consensus        10 ~dvtIis~G~~~~~al~Aa~~L~~~gi~~~vid~~   44 (132)
T d1w85b2          10 KDITIIAYGAMVHESLKAAAELEKEGISAEVVDLR   44 (132)
T ss_dssp             SSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCEEEEEChHHHHHHHHHHHHHHhcCCCeEEEeee
Confidence            48999999976   556677888899999999854

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.48  E-value=0.81  Score=28.75  Aligned_cols=29  Identities=31%  Similarity=0.461  Sum_probs=24.8

Q ss_pred             EEEEC-CCHHHHHHHHHHHHCCCceEEEcC
Q 047339            8 VVIIG-AGIAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         8 v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      |+|.| +|..|..++..|.++|++|.++++
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            55655 579999999999999999999974

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=84.43  E-value=0.4  Score=30.11  Aligned_cols=29  Identities=31%  Similarity=0.363  Sum_probs=24.5

Q ss_pred             cEEEECCCHH-----HHHHHHHHHHCCCceEEEc
Q 047339            7 DVVIIGAGIA-----GLATALALKRLGIKPLVLE   35 (115)
Q Consensus         7 ~v~IvG~G~~-----Gl~~A~~l~~~g~~v~viE   35 (115)
                      +|+|.++|-.     -+.+|..|+++|++|+++-
T Consensus         2 ril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~   35 (391)
T d1pn3a_           2 RVLITGCGSRGDTEPLVALAARLRELGADARMCL   35 (391)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEEE
Confidence            7888888863     6888999999999999884

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=0.37  Score=29.40  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=25.5

Q ss_pred             cccEEEE-CCCHHHHHH-----HHHHHHCCCceEEEcCCCCC
Q 047339            5 EKDVVII-GAGIAGLAT-----ALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         5 ~~~v~Iv-G~G~~Gl~~-----A~~l~~~g~~v~viE~~~~~   40 (115)
                      ...|+|+ |=|=+|=++     |..|+++|++|+++|..+..
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3456655 555555544     78899999999999988653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=83.92  E-value=1  Score=25.98  Aligned_cols=30  Identities=23%  Similarity=0.225  Sum_probs=23.8

Q ss_pred             ccEEEE--CCCHHHHHHHHHHHHCCCceEEEc
Q 047339            6 KDVVII--GAGIAGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         6 ~~v~Iv--G~G~~Gl~~A~~l~~~g~~v~viE   35 (115)
                      .+++|+  |+|..|+.+...++..|.+|...-
T Consensus        30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v   61 (189)
T d1gu7a2          30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVI   61 (189)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEE
Confidence            468888  568889998888888999887653

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.90  E-value=0.45  Score=28.77  Aligned_cols=35  Identities=17%  Similarity=0.175  Sum_probs=25.8

Q ss_pred             ccEEEECCCH-HHHHHHHHHH---HCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGI-AGLATALALK---RLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~-~Gl~~A~~l~---~~g~~v~viE~~~~~   40 (115)
                      +.|+|.||.- .|..+|..|.   ++|++|.+..|+...
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~   41 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   41 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            4588888754 3777776664   579999999987653

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.78  E-value=0.25  Score=31.56  Aligned_cols=33  Identities=33%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~   38 (115)
                      +.+|+|||+|-.++.- ..++... .+|+++|-++
T Consensus       107 pk~VLIiGgG~G~~~r-ellk~~~v~~v~~VEID~  140 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILR-EVLKHESVEKVTMCEIDE  140 (312)
T ss_dssp             CCEEEEESCTTSHHHH-HHTTCTTCCEEEEECSCH
T ss_pred             CCeEEEeCCCchHHHH-HHHHcCCcceEEEEcccH
Confidence            5789999999855443 3344334 5799998654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=83.68  E-value=0.57  Score=28.89  Aligned_cols=30  Identities=33%  Similarity=0.446  Sum_probs=27.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHCCCceEEE
Q 047339            5 EKDVVIIGAGIAGLATALALKRLGIKPLVL   34 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~vi   34 (115)
                      ..+++|=|-|-+|..+|.+|.+.|.+|+-+
T Consensus        36 g~~v~IQGfGnVG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          36 GKTVALAGFGNVAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             TCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            468999999999999999999999988755

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=0.64  Score=28.81  Aligned_cols=30  Identities=27%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             ccEEEE-CCCH-HHHHHHHHHHHCCCceEEEc
Q 047339            6 KDVVII-GAGI-AGLATALALKRLGIKPLVLE   35 (115)
Q Consensus         6 ~~v~Iv-G~G~-~Gl~~A~~l~~~g~~v~viE   35 (115)
                      ++|++| ||.- .|..+|..|++.|.++.++.
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~   33 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVY   33 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEE
Confidence            456665 5443 38889999999999876553

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.44  E-value=0.82  Score=26.42  Aligned_cols=31  Identities=23%  Similarity=0.236  Sum_probs=23.6

Q ss_pred             ccEEEECCC------HHHHHHHHHHHHCCCceEEEcC
Q 047339            6 KDVVIIGAG------IAGLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         6 ~~v~IvG~G------~~Gl~~A~~l~~~g~~v~viE~   36 (115)
                      +++-|.|-|      ..-+-+|..|+++|++|.+++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            456777777      2345667789999999999984

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.39  E-value=0.66  Score=25.53  Aligned_cols=32  Identities=31%  Similarity=0.427  Sum_probs=26.3

Q ss_pred             ccEEEECCCHH---HHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAGIA---GLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G~~---Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .|++||+.|..   .+-+|..|.+.|+++.|++..
T Consensus        16 ~dvtiis~G~~~~~al~aa~~L~~~gi~~~vid~~   50 (137)
T d1umdb2          16 KDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLR   50 (137)
T ss_dssp             SSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCEEEEEcchhhhhhhhhhhcccccCcceEEEeec
Confidence            58999999876   566777888899999999854

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.28  E-value=0.2  Score=30.04  Aligned_cols=31  Identities=19%  Similarity=0.052  Sum_probs=24.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .+|+.+|||..  ..+.+|++.|++|+=+|-++
T Consensus        47 ~rvLd~GCG~G--~~a~~LA~~G~~V~gvD~S~   77 (229)
T d2bzga1          47 LRVFFPLCGKA--VEMKWFADRGHSVVGVEISE   77 (229)
T ss_dssp             CEEEETTCTTC--THHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeCCCCc--HHHHHHHhCCCcEEEEeCCH
Confidence            47999999994  33677888999999888554

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.96  E-value=0.54  Score=26.76  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=22.8

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHHCC--CceEEEc
Q 047339            2 ETVEKDVVIIGAGIAGLATALALKRLG--IKPLVLE   35 (115)
Q Consensus         2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE   35 (115)
                      ++.+.+|+|||+|..|-.-+..+.+..  ..+.+++
T Consensus         4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~   39 (172)
T d1lc0a1           4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIG   39 (172)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEE
T ss_pred             CCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEe
Confidence            346789999999999887665555432  2344444

>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=82.63  E-value=0.96  Score=24.87  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=27.4

Q ss_pred             ccccEEEECCCHH---HHHHHHHHHHCCCceEEEcC
Q 047339            4 VEKDVVIIGAGIA---GLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         4 ~~~~v~IvG~G~~---Gl~~A~~l~~~g~~v~viE~   36 (115)
                      .+.||+|++.|..   .+-+|-.|.+.|+++.|+.-
T Consensus        22 ~~~dv~liasGs~v~~al~Aa~~L~~~gi~~~Vvs~   57 (136)
T d1itza3          22 NKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSF   57 (136)
T ss_dssp             TCCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCEEEEEecHHHHHHHHHHHHHHhcccccccccc
Confidence            3468999999986   47788899999999999853

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.61  E-value=0.23  Score=31.21  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=21.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCC
Q 047339            5 EKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSD   38 (115)
Q Consensus         5 ~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~   38 (115)
                      +.+|+|||+|-.+..-. .++.. ..+|+++|-.+
T Consensus        79 pk~vLiiGgG~G~~~~~-~l~~~~~~~v~~vEiD~  112 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLRE-VVKHPSVESVVQCEIDE  112 (285)
T ss_dssp             CCEEEEEECTTSHHHHH-HTTCTTCCEEEEEESCH
T ss_pred             cCeEEEeCCCchHHHHH-HHHcCCcceeeeccCCH
Confidence            57899999998554433 33333 46888888553

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.41  E-value=0.86  Score=27.13  Aligned_cols=29  Identities=28%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             EEEECCCHH---HHHHHHHHHHCCCceEEEcC
Q 047339            8 VVIIGAGIA---GLATALALKRLGIKPLVLEK   36 (115)
Q Consensus         8 v~IvG~G~~---Gl~~A~~l~~~g~~v~viE~   36 (115)
                      ++++|.|--   |+.+|.+|..+|++|.++--
T Consensus        44 lvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~   75 (211)
T d2ax3a2          44 LVLCGGGNNGGDGFVVARNLLGVVKDVLVVFL   75 (211)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             EEEECCCCCchhHHHHHHHHHhcCCeeEEEec
Confidence            456777764   89999999999999998864

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.13  E-value=1.1  Score=27.42  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=24.0

Q ss_pred             ccEEEE-CC-CHHHHHHHHHHHHC-CCceEEEcCCCC
Q 047339            6 KDVVII-GA-GIAGLATALALKRL-GIKPLVLEKSDG   39 (115)
Q Consensus         6 ~~v~Iv-G~-G~~Gl~~A~~l~~~-g~~v~viE~~~~   39 (115)
                      ++|+|| || +=.|+.+|..|++. |.+|.+..|+..
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            467666 33 33377888888875 899999987653

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.94  E-value=0.3  Score=30.77  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=22.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339            4 VEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSD   38 (115)
Q Consensus         4 ~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~   38 (115)
                      .+.+|+|||+|-.++.-. .++..+ .+++++|-++
T Consensus        80 ~pk~VLiiGgG~G~~~r~-~l~~~~~~~i~~VEiD~  114 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLRE-VARHASIEQIDMCEIDK  114 (290)
T ss_dssp             CCCEEEEETCSSSHHHHH-HTTCTTCCEEEEEESCH
T ss_pred             CCcceEEecCCchHHHHH-HHhcccceeeEEecCCH
Confidence            356899999998555443 333334 4688888553

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.91  E-value=0.47  Score=29.24  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=24.5

Q ss_pred             ccEEEECCCHHHHH-----HHHHHHHCCCceEEEcCCCCC
Q 047339            6 KDVVIIGAGIAGLA-----TALALKRLGIKPLVLEKSDGL   40 (115)
Q Consensus         6 ~~v~IvG~G~~Gl~-----~A~~l~~~g~~v~viE~~~~~   40 (115)
                      +.|+|.|=|=+|=+     +|..|++.|++|+++|..+..
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            45777773333433     467788999999999987653

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=81.51  E-value=1.3  Score=26.67  Aligned_cols=31  Identities=29%  Similarity=0.360  Sum_probs=23.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHCCCc-eEEEcC
Q 047339            6 KDVVIIGA-GIAGLATALALKRLGIK-PLVLEK   36 (115)
Q Consensus         6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~-v~viE~   36 (115)
                      ..++|.|| |-.|..+|..|+++|.+ +.++-|
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R   42 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSR   42 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            45788885 55699999999999996 555544

>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein YNL200c (YNU0 YEAST)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.35  E-value=1.4  Score=26.71  Aligned_cols=27  Identities=44%  Similarity=0.647  Sum_probs=21.8

Q ss_pred             EEECCCHH---HHHHHHHHHHCCCceEEEc
Q 047339            9 VIIGAGIA---GLATALALKRLGIKPLVLE   35 (115)
Q Consensus         9 ~IvG~G~~---Gl~~A~~l~~~g~~v~viE   35 (115)
                      +++|.|--   |+.+|..|.+.|++|.++-
T Consensus        60 il~G~GNNGGDGl~~Ar~L~~~G~~V~v~~   89 (243)
T d1jzta_          60 VIAGPGNNGGDGLVCARHLKLFGYNPVVFY   89 (243)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             EEECCCCccHHHHHHHHHHHhcCCeeEEEE
Confidence            45665554   8999999999999999884

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=80.74  E-value=1.6  Score=24.58  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             CccccEEEECCCHHHHH-HHHHHHHC-CCceEEE-cCCC
Q 047339            3 TVEKDVVIIGAGIAGLA-TALALKRL-GIKPLVL-EKSD   38 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl~-~A~~l~~~-g~~v~vi-E~~~   38 (115)
                      +.+.++.|||+|-.|-. +...|... ..++..+ +++.
T Consensus         2 ~kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~   40 (157)
T d1nvmb1           2 NQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDA   40 (157)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCT
T ss_pred             CCCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecch
Confidence            34689999999988874 44445443 3444433 4443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=80.37  E-value=1.2  Score=25.47  Aligned_cols=32  Identities=28%  Similarity=0.269  Sum_probs=24.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339            7 DVVIIGA-GIAGLATALALKRLGIKPLVLEKSD   38 (115)
Q Consensus         7 ~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~   38 (115)
                      .|+|.|+ |.+|..+...++..|.+|..+.+++
T Consensus        32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~   64 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD   64 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH
Confidence            4667677 6688888888888999988776543

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=1.2  Score=24.55  Aligned_cols=32  Identities=16%  Similarity=0.273  Sum_probs=25.8

Q ss_pred             ccEEEECCCHH---HHHHHHHHHHCCCceEEEcCC
Q 047339            6 KDVVIIGAGIA---GLATALALKRLGIKPLVLEKS   37 (115)
Q Consensus         6 ~~v~IvG~G~~---Gl~~A~~l~~~g~~v~viE~~   37 (115)
                      .|++|++.|..   .+-+|..|.+.|+++.|++-.
T Consensus        14 ~ditiis~G~~~~~al~aa~~L~~~gi~~~vid~~   48 (138)
T d2ozlb2          14 THITVVSHSRPVGHCLEAAAVLSKEGVECEVINMR   48 (138)
T ss_dssp             SSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CCEEEEEccHHHHhHHHHhhhhcccCcceEEEEec
Confidence            58999999965   555677888899999999854

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.07  E-value=1.2  Score=27.05  Aligned_cols=37  Identities=24%  Similarity=0.365  Sum_probs=26.3

Q ss_pred             CccccEEEECCCHHHH-----HHHHHHHHCCCceEEEcCCCC
Q 047339            3 TVEKDVVIIGAGIAGL-----ATALALKRLGIKPLVLEKSDG   39 (115)
Q Consensus         3 ~~~~~v~IvG~G~~Gl-----~~A~~l~~~g~~v~viE~~~~   39 (115)
                      .|+.=+.+.|=|=+|=     .+|..|+++|.+|+++|..+.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3444455666666553     357889999999999997753