Citrus Sinensis ID: 047371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKFSPI
Secondary Structure (PSIPRED)
cccccEEEEccEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccEEEEccccccccccccccccEEEEEccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHccccccEEEEEccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccEEEccEEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccccHHHEEEEccccccccccccccccccEEcccccccccccccccccEEEHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHccccccccEEcccEEEEEEEccccc
Coil and Loop (DISEMBL)
esfhpvevtkglwivpewstppdvqatniilnpglafgtgehaTTKLCLLLLQSLIKGGElfldygtgsgiLGIAAIKFGAAmfvgvdidpqVIKSAHQNaalnnigpkkiklhlvpdrtftasMNERVDGVVEYLSSHeirgiseteeYDVVIANIllnplpqlaDHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSekddwrcvsgtkfspi
Flexible Loop (DISEMBL)
esfhpvevtkglwivpewstppdVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAlnnigpkkiklHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILvsekddwrcvsgtkfspi
Low Complexity Region (SEG)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKlcllllqslIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKFSPI
Disordered region (IsUnstruct)
*****VEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVS*******
Disordered Region (DISOPRED)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKFS**
Disordered Region (DISEMBL)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKFSPI
Disordered Region (DISPRO)
*SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKFSPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
A4SJL7	292	Ribosomal protein L11 met	yes	no	0.864	0.657	0.394	3e-39
Q3IIC0	293	Ribosomal protein L11 met	yes	no	0.855	0.648	0.406	5e-39
A0KNJ1	292	Ribosomal protein L11 met	yes	no	0.869	0.660	0.388	4e-38
Q7VPN5	293	Ribosomal protein L11 met	yes	no	0.864	0.655	0.385	6e-38
A5F3S3	295	Ribosomal protein L11 met	yes	no	0.869	0.654	0.406	8e-38
Q9KV64	295	Ribosomal protein L11 met	yes	no	0.869	0.654	0.406	9e-38
C3LQP9	295	Ribosomal protein L11 met	yes	no	0.869	0.654	0.406	1e-37
B0BRD1	293	Ribosomal protein L11 met	yes	no	0.864	0.655	0.389	2e-37
B6ENA3	294	Ribosomal protein L11 met	yes	no	0.864	0.653	0.394	2e-37
B3GYL9	293	Ribosomal protein L11 met	yes	no	0.864	0.655	0.389	3e-37

>sp|A4SJL7|PRMA_AERS4 Ribosomal protein L11 methyltransferase OS=Aeromonas salmonicida (strain A449) GN=prmA PE=3 SV=1

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 26/218 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           + FHP++  + LWI P W   P+  A N++L+PGLAFGTG H TT LCL  L  L   G+
Sbjct: 99  DHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 158

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGILGIAA+K GAA  +G+DIDPQ I+++H NA  N +   +I+L+L  D+ 
Sbjct: 159 TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERNGVA-GQIELYLPADQ- 216

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                                    +  E DVV+ANIL  PL +LA  I  + KPG+++ 
Sbjct: 217 ------------------------PQDVEADVVVANILAGPLRELAPLIAGHGKPGSLMA 252

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SG+L  Q P +   Y ++ +    + K++W  +SG K
Sbjct: 253 LSGVLESQAPELETIYGQWFDMDPTAVKEEWCRLSGRK 290

Methylates ribosomal protein L11.
Aeromonas salmonicida (strain A449) (taxid: 382245)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1

 Score =  160 bits (406), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 29/219 (13%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  K LWI P W   PD  A N++L+PGLAFGTG HATT LCL  L+S    G+
Sbjct: 101 DNFHPIQFGKRLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATTALCLKWLESQDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR- 119
             +D+G GSGILGIAAIK GA   +G+DIDPQ ++++  NA  N +   K++++L  ++ 
Sbjct: 161 TVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEASLDNANRNGVA-DKLEVYLPENQP 219

Query: 120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV 179
            F+A                           D+V+ANIL  PL +L   I+   KPG  +
Sbjct: 220 EFSA---------------------------DIVVANILAQPLRELHSVILGLLKPGGKI 252

Query: 180 GISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
            +SGIL+EQ   + + Y+ F+E   ++ + DW  VSGTK
Sbjct: 253 AMSGILTEQAQSVADVYAPFIELDDIAIEGDWTRVSGTK 291

Methylates ribosomal protein L11.

Pseudoalteromonas haloplanktis (strain TAC 125) (taxid: 326442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A0KNJ1|PRMA_AERHH Ribosomal protein L11 methyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=prmA PE=3 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 123/219 (56%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           + FHP++  + LWI P W   P+  A N++L+PGLAFGTG H TT LCL  L  L   G+
Sbjct: 99  DHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 158

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGILGIAA+K GAA  +G+DIDPQ I+++  NA  N +   +I+L+L  D+ 
Sbjct: 159 TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNGVA-DQIELYLPADQ- 216

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                                    +  E DVV+ANIL  PL +LA  I  + K G+++ 
Sbjct: 217 ------------------------PQDVEADVVVANILAGPLRELAPLIAGHGKAGSLMA 252

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219
           +SG+L  Q P +   Y ++ E    + K++W  +SG K 
Sbjct: 253 LSGVLESQAPELETIYGQWFEMDPTAVKEEWCRLSGRKL 291

Methylates ribosomal protein L11.

Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7VPN5|PRMA_HAEDU Ribosomal protein L11 methyltransferase OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=prmA PE=3 SV=1

 Score =  157 bits (397), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/218 (38%), Positives = 123/218 (56%), Gaps = 26/218 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  + LWI P W   PD +A NI+L+PGLAFGTG H TT LCL  L  L   G+
Sbjct: 101 DNFHPMQFGQRLWICPSWREVPDEKAVNIMLDPGLAFGTGTHPTTALCLQWLDGLDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGIL I+A+K GA   +G+DIDPQ I ++  NAA N +   +++L L  D+ 
Sbjct: 161 TVIDFGCGSGILAISALKLGAKQAIGIDIDPQAILASQNNAAANGVA-DRLQLFLAKDQ- 218

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                                    +  + DVV+ANIL  PL +LA +I++  KP   +G
Sbjct: 219 ------------------------PQALQADVVVANILAGPLKELAPNIMTLVKPQGYLG 254

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SGIL+ Q   +   Y+   +   V EK++W  ++G K
Sbjct: 255 LSGILATQAQSVCQAYAAVFKLDPVVEKEEWCRITGIK 292

Methylates ribosomal protein L11.

Haemophilus ducreyi (strain 35000HP / ATCC 700724) (taxid: 233412)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A5F3S3|PRMA_VIBC3 Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=prmA PE=3 SV=1

 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 125/219 (57%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  + LWI P W   PD QA N++L+PGLAFGTG H TT LCL  L +L   G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLTGK 161

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGIL IAAIK GAA  +G+DIDPQ + ++  NAA N +   +I+++L  D+ 
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                    +G+V                 DVV+ANIL  PL +L+  I    KPG  + 
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPTIKGLLKPGGQLA 255

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219
           +SGIL  Q   +   Y + LE   ++EK +W  +SG K 
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRKL 294

Methylates ribosomal protein L11.

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9KV64|PRMA_VIBCH Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=prmA PE=3 SV=1

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 125/219 (57%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  + LWI P W   PD QA N++L+PGLAFGTG H TT LCL  L +L   G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSGK 161

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGIL IAAIK GAA  +G+DIDPQ + ++  NAA N +   +I+++L  D+ 
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                    +G+V                 DVV+ANIL  PL +L+  I    KPG  + 
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPIIKGLLKPGGQLA 255

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219
           +SGIL  Q   +   Y + LE   ++EK +W  +SG K 
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRKL 294

Methylates ribosomal protein L11.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|C3LQP9|PRMA_VIBCM Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=prmA PE=3 SV=1

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 125/219 (57%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  + LWI P W   PD QA N++L+PGLAFGTG H TT LCL  L +L   G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLTGK 161

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGIL IAAIK GAA  +G+DIDPQ + ++  NAA N +   +I+++L  D+ 
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                    +G+V                 DVV+ANIL  PL +L+  I    KPG  + 
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPIIKGLLKPGGQLA 255

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219
           +SGIL  Q   +   Y + LE   ++EK +W  +SG K 
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRKL 294

Methylates ribosomal protein L11.

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B0BRD1|PRMA_ACTPJ Ribosomal protein L11 methyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=prmA PE=3 SV=1

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 26/218 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  K LWI P W   PD  A N++L+PGLAFGTG H TT LCL  L SL   G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGIL IAA+K GA   +G+DIDPQ I ++  NA  N +   +++L L  D+ 
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQ- 218

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                                    +  + DVV+ANIL  PL +LA +I++  KP   +G
Sbjct: 219 ------------------------PQDLQADVVVANILAGPLKELAPNIITLVKPQGDLG 254

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SGIL+ Q   +   Y+       V EK++W  ++G K
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDSVVEKEEWCRITGVK 292

Methylates ribosomal protein L11.

Actinobacillus pleuropneumoniae serotype 3 (strain JL03) (taxid: 434271)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B6ENA3|PRMA_ALISL Ribosomal protein L11 methyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=prmA PE=3 SV=1

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 121/218 (55%), Gaps = 26/218 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  + LWI P W   P+  A N++L+PGLAFGTG HATT LCL  L+S+   G+
Sbjct: 102 DNFHPMKFGERLWICPSWREIPEPDAINVMLDPGLAFGTGTHATTALCLEWLESIDLTGK 161

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGIL IAAIK GAA  VG+DIDPQ I ++  NA  N                
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVVGIDIDPQAITASKDNATRN---------------- 205

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                     GV E L+    +   E    DVV+ANIL  PL +L+  I ++ KPG  + 
Sbjct: 206 ----------GVAEQLTLFLPQDQPENLVADVVVANILAAPLRELSSIITAHVKPGGALA 255

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SG+L  Q   + + YS+      ++E+ +W  +SG K
Sbjct: 256 MSGVLDTQANNVASYYSDNFTLDAIAEQQEWCRISGIK 293

Methylates ribosomal protein L11.

Aliivibrio salmonicida (strain LFI1238) (taxid: 316275)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B3GYL9|PRMA_ACTP7 Ribosomal protein L11 methyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=prmA PE=3 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 26/218 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  K LWI P W   PD  A N++L+PGLAFGTG H TT LCL  L SL   G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             +D+G GSGIL IAA+K GA   +G+DIDPQ I ++  NA  N +   +++L L  D+ 
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQ- 218

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                                    +  + DVV+ANIL  PL +LA +I++  KP   +G
Sbjct: 219 ------------------------PQDLQADVVVANILAGPLKELAPNIITLVKPQGDLG 254

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SGIL+ Q   +   Y+       V EK++W  ++G K
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVK 292

Methylates ribosomal protein L11.

Actinobacillus pleuropneumoniae serotype 7 (strain AP76) (taxid: 537457)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
356514667	381	PREDICTED: ribosomal protein L11 methylt	0.909	0.530	0.655	8e-75
449507116	390	PREDICTED: ribosomal protein L11 methylt	0.918	0.523	0.637	2e-72
449456729	390	PREDICTED: ribosomal protein L11 methylt	0.918	0.523	0.637	2e-72
224117126	322	predicted protein [Populus trichocarpa]	0.959	0.661	0.719	2e-72
225461518	367	PREDICTED: ribosomal protein L11 methylt	0.950	0.574	0.669	2e-70
388507954	397	unknown [Lotus japonicus]	0.981	0.549	0.636	3e-70
357516523	215	Ribosomal protein L11 methyltransferase	0.900	0.930	0.655	7e-68
297792815	368	hypothetical protein ARALYDRAFT_495472 [	0.909	0.548	0.646	1e-63
148908867	414	unknown [Picea sitchensis]	0.954	0.512	0.554	5e-63
218197035	409	hypothetical protein OsI_20472 [Oryza sa	0.981	0.533	0.532	2e-62

>gi|356514667|ref|XP_003526025.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Glycine max]

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/218 (65%), Positives = 166/218 (76%), Gaps = 16/218 (7%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ES HPV+VT+GLW+VP+W TPPDVQATNII+NPGLAFGTGEHATTKLCLLLL   IKGGE
Sbjct: 171 ESLHPVQVTEGLWVVPKWCTPPDVQATNIIVNPGLAFGTGEHATTKLCLLLLHGCIKGGE 230

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             LDYGTG+GIL IAA+KFGAA  VGVD+D + I SA QNA LNNIG  K++LHLV  +T
Sbjct: 231 HILDYGTGTGILAIAALKFGAAFAVGVDVDSEAIASASQNAYLNNIGQDKMQLHLVASKT 290

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
            ++S N+   G                E++DVV+ANILLNPL  LAD I+S+AKPGAVVG
Sbjct: 291 SSSSKNDLTFG----------------EKFDVVVANILLNPLLDLADQIISHAKPGAVVG 334

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SGILSEQ+  II RYS FLE I VS+ DDW CVSG K
Sbjct: 335 LSGILSEQVQYIIERYSPFLEGIEVSKMDDWACVSGRK 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507116|ref|XP_004162937.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Cucumis sativus]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/218 (63%), Positives = 164/218 (75%), Gaps = 14/218 (6%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ESF PV+V +GLWIVPEW+TP DV ATNIIL+PGLAFG GEH TTKLCL LL SL+KGGE
Sbjct: 180 ESFKPVKVMEGLWIVPEWTTPSDVHATNIILHPGLAFGMGEHPTTKLCLQLLHSLVKGGE 239

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
            FLDYGTG+G+L IA++KFGAA  VG+D+DPQ I+S  +NAALNNI P+K++LHLVP   
Sbjct: 240 YFLDYGTGTGVLAIASLKFGAAFSVGIDVDPQAIESGQKNAALNNIEPEKLQLHLVP--- 296

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                      + EY +      IS  E +D+VIANIL NPL  LAD++VSYAKP AVV 
Sbjct: 297 ---------SDLAEYKNCEAY--ISGKENFDIVIANILQNPLLDLADYVVSYAKPEAVVA 345

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SGILSEQ+P II RYS+FLE I VS  DDW CVSG K
Sbjct: 346 LSGILSEQVPAIIERYSQFLEGISVSTMDDWACVSGKK 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456729|ref|XP_004146101.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Cucumis sativus]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/218 (63%), Positives = 164/218 (75%), Gaps = 14/218 (6%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ESF PV+V +GLWIVPEW+TP DV ATNIIL+PGLAFG GEH TTKLCL LL SL+KGGE
Sbjct: 180 ESFKPVKVMEGLWIVPEWTTPSDVHATNIILHPGLAFGMGEHPTTKLCLQLLHSLVKGGE 239

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
            FLDYGTG+G+L IA++KFGAA  VG+D+DPQ I+S  +NAALNNI P+K++LHLVP   
Sbjct: 240 YFLDYGTGTGVLAIASLKFGAAFSVGIDVDPQAIESGQKNAALNNIEPEKLQLHLVPSD- 298

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                      + EY +      IS  E +D+VIANIL NPL  LAD++VSYAKP AVV 
Sbjct: 299 -----------LAEYKNCEAY--ISGKENFDIVIANILQNPLLDLADYVVSYAKPEAVVA 345

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SGILSEQ+P II RYS+FLE I VS  DDW CVSG K
Sbjct: 346 LSGILSEQVPAIIERYSQFLEGISVSTMDDWACVSGKK 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117126|ref|XP_002317484.1| predicted protein [Populus trichocarpa] gi|222860549|gb|EEE98096.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/214 (71%), Positives = 174/214 (81%), Gaps = 1/214 (0%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ESFHPVEVT+GLWIVPEW +PPDVQATNIILNPGLAFGTGEH TTKLCLLLL+ LIKG E
Sbjct: 63  ESFHPVEVTEGLWIVPEWRSPPDVQATNIILNPGLAFGTGEHPTTKLCLLLLKKLIKGEE 122

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
           LFLDYGTGSG+L IAA+KFGAA+ VG DIDPQ I SA  NA LN+IGP+ ++LHLVP +T
Sbjct: 123 LFLDYGTGSGVLAIAALKFGAALSVGFDIDPQAIMSARHNATLNSIGPETMELHLVPGKT 182

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
             +S++ R D +V+  S      IS TE+YDVVIANILLNPL  LADHIVSYAKP AVVG
Sbjct: 183 -CSSLDGREDEMVKEQSCCGTGVISGTEKYDVVIANILLNPLLDLADHIVSYAKPRAVVG 241

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCV 214
           ISGI+SEQ   I++RYS  LEDI VSE D W CV
Sbjct: 242 ISGIISEQCSCIVDRYSMLLEDISVSEMDGWACV 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461518|ref|XP_002282613.1| PREDICTED: ribosomal protein L11 methyltransferase [Vitis vinifera] gi|302142971|emb|CBI20266.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/218 (66%), Positives = 166/218 (76%), Gaps = 7/218 (3%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ESF PVEVT+GLWIVPEW TPPD  ATNIILNPG AFGTGEH TTKLCLLLL  LIKGGE
Sbjct: 150 ESFCPVEVTEGLWIVPEWRTPPDAHATNIILNPGFAFGTGEHPTTKLCLLLLHGLIKGGE 209

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
            FLDYGTGSGIL IAA+KFGAA  VG+D+DPQ I +A QNAALN I P K++L LVP   
Sbjct: 210 RFLDYGTGSGILAIAALKFGAASSVGIDVDPQAITAATQNAALNKISPNKMQLTLVPP-- 267

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                + R   VVE  S + +   +E+E +D+VIANILLNPL  LAD IVS+AKPGAVV 
Sbjct: 268 -----DGRTHEVVEGQSPNSMGVTTESESFDIVIANILLNPLLDLADDIVSHAKPGAVVA 322

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SGI+SEQ+P I+ RYS  LE I V+E DDW CV GTK
Sbjct: 323 VSGIISEQVPYIMERYSPLLESISVTEIDDWACVCGTK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507954|gb|AFK42043.1| unknown [Lotus japonicus]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/220 (63%), Positives = 165/220 (75%), Gaps = 2/220 (0%)

Query: 1   ESFHPVEVTKGLWIVPEWSTP--PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKG 58
           ESF PVEVTK LW+VP+WS P  PD +ATNIIL+PGLAFGTGEHATTKLCLLLL+  +KG
Sbjct: 177 ESFCPVEVTKDLWVVPKWSAPRPPDDKATNIILDPGLAFGTGEHATTKLCLLLLRGCVKG 236

Query: 59  GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD 118
           GE  LDYGTG+GIL IAA+KFGAA  VGVDID   I SA +NAALNNI P K++L L+  
Sbjct: 237 GEYILDYGTGTGILAIAALKFGAAFAVGVDIDSDAIASASENAALNNIEPDKMQLLLIAS 296

Query: 119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAV 178
              ++   +   GVVE   + EI+ ++   +YD VIAN+LLNPL  LAD IVS AKPGAV
Sbjct: 297 DASSSFKADSKSGVVEGERTCEIQTVTGQYKYDAVIANMLLNPLLDLADQIVSCAKPGAV 356

Query: 179 VGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +G+SGILSEQ+  II RYS FLE I VS  D+W CVSG K
Sbjct: 357 IGLSGILSEQVQYIIRRYSPFLEGIEVSHMDEWACVSGKK 396

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516523|ref|XP_003628550.1| Ribosomal protein L11 methyltransferase [Medicago truncatula] gi|355522572|gb|AET03026.1| Ribosomal protein L11 methyltransferase [Medicago truncatula]

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 131/200 (65%), Positives = 157/200 (78%)

Query: 23  DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAA 82
           DVQATNI+LNPG AFGTGEHATTKLCLLLL   I GGE  LDYGTGSGIL IAA+KFGAA
Sbjct: 8   DVQATNIMLNPGHAFGTGEHATTKLCLLLLHDCITGGEYILDYGTGSGILAIAALKFGAA 67

Query: 83  MFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIR 142
             VGVD+D Q I SA+QNAALNNIGP +I+L L+      +S +++  G VE  ++HEI+
Sbjct: 68  FAVGVDVDAQAIASAYQNAALNNIGPDRIQLQLIAGENSLSSKDDQTSGFVEGENTHEIQ 127

Query: 143 GISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLED 202
            I++ ++YDVVIANILLNPL   AD I+S AKPGAV+G+SGILSEQ+ +IIN+YS FLE 
Sbjct: 128 TITDKDKYDVVIANILLNPLLDNADQIISRAKPGAVIGLSGILSEQVHQIINKYSPFLEG 187

Query: 203 ILVSEKDDWRCVSGTKFSPI 222
           I VS+ DDW CVSG K S +
Sbjct: 188 IEVSKLDDWACVSGRKTSSL 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792815|ref|XP_002864292.1| hypothetical protein ARALYDRAFT_495472 [Arabidopsis lyrata subsp. lyrata] gi|297310127|gb|EFH40551.1| hypothetical protein ARALYDRAFT_495472 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/218 (64%), Positives = 161/218 (73%), Gaps = 16/218 (7%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           E F PVE+ + LWIVPEW++PP  +A NIILNPG AFGTGEH TTKLCLLLLQSLIKGGE
Sbjct: 160 ELFQPVEIAEMLWIVPEWTSPPVTEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGE 219

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
            FLDYGTGSGIL IAA+KFGAA  VGVDIDP  IKSA  NAALNNI  +K++LHL P   
Sbjct: 220 AFLDYGTGSGILAIAALKFGAASSVGVDIDPLAIKSASHNAALNNIPLEKLELHLAPSE- 278

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                        +  S  EI      +++DVVIANILLNP+ +LADHI+S+AKPGA +G
Sbjct: 279 -------------DSSSGREIP--LRKQQFDVVIANILLNPVMELADHILSFAKPGATIG 323

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           ISGILSEQL  II RYS FLEDI V+   DW C+SGTK
Sbjct: 324 ISGILSEQLTNIIERYSPFLEDISVATIGDWVCMSGTK 361

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148908867|gb|ABR17538.1| unknown [Picea sitchensis]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 154/220 (70%), Gaps = 8/220 (3%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           E F P +VT GLW++P+W +PPD  A NIIL+PGLAFGTGEH TT+LCLL LQ  +KGGE
Sbjct: 197 EIFQPTQVTDGLWVIPKWRSPPDPIAINIILDPGLAFGTGEHPTTRLCLLFLQEFVKGGE 256

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             LDYGTGSGILGIAA+K GAA  V VD DP  + SA  NA+LN+ GP KI++HLVP+  
Sbjct: 257 HVLDYGTGSGILGIAALKMGAARAVAVDSDPMAVSSAIHNASLNSFGPDKIQVHLVPNDG 316

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETE--EYDVVIANILLNPLPQLADHIVSYAKPGAV 178
             A  +E        +  H     S+T   +YDV++ANILLNPL  LA HI  Y KPG  
Sbjct: 317 SNAEASEGT------MKGHLATTTSDTGPVQYDVIVANILLNPLLYLASHITGYIKPGGH 370

Query: 179 VGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           VG+SGI+ +Q+PR+ + YS+FL++I VS+ D W C+ GTK
Sbjct: 371 VGLSGIILDQVPRVQDCYSKFLDNISVSKADGWACIKGTK 410

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197035|gb|EEC79462.1| hypothetical protein OsI_20472 [Oryza sativa Indica Group]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 151/218 (69%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           E++   +V  GLW++P+W TPPD QA NII+NPGLAFGTGEH TTKLCLLLL+  +KGGE
Sbjct: 190 ETYESTKVIDGLWVIPKWRTPPDPQAINIIINPGLAFGTGEHPTTKLCLLLLRETVKGGE 249

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
            FLDYGTG+G+LGIAA+K GAA+  G+DIDPQ + SA +N  LN I   K+ ++LVP   
Sbjct: 250 RFLDYGTGTGVLGIAALKMGAALSTGIDIDPQAVTSACENMMLNGIDSNKMLVYLVPTNA 309

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
            +A     +D   E   +  +   S    YD+V ANILLNPL +L + IV YAK G +V 
Sbjct: 310 QSACFPSNIDKSEENRPTGNLELKSSKGSYDIVAANILLNPLLELVEDIVGYAKSGGIVA 369

Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           +SGILSEQ+P++   YS +LE+I VSE D W C+ G +
Sbjct: 370 VSGILSEQVPKVEEAYSRYLENISVSEIDGWACLRGNR 407

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2154739	371	AT5G53920 [Arabidopsis thalian	0.900	0.539	0.597	1e-59
TIGR_CMR|VC_0293	295	VC_0293 "ribosomal protein L11	0.531	0.4	0.453	1.6e-24
UNIPROTKB|P0A8T1	293	prmA "methyltransferase for 50	0.531	0.402	0.436	8.7e-24
TIGR_CMR|CPS_0540	293	CPS_0540 "ribosomal protein L1	0.531	0.402	0.403	2.1e-22
TIGR_CMR|SO_0395	293	SO_0395 "ribosomal protein L11	0.531	0.402	0.420	7e-22
TIGR_CMR|BA_4537	312	BA_4537 "ribosomal protein L11	0.459	0.326	0.413	9.5e-18
TIGR_CMR|GSU_0447	299	GSU_0447 "ribosomal protein L1	0.531	0.394	0.385	9.8e-16
TIGR_CMR|CHY_0417	305	CHY_0417 "ribosomal protein L1	0.621	0.452	0.344	2.6e-15
TIGR_CMR|GSU_3320	198	GSU_3320 "ribosomal protein L1	0.472	0.530	0.403	1.7e-11
TIGR_CMR|CJE_1260	281	CJE_1260 "ribosomal protein L1	0.351	0.277	0.417	2.1e-11

TAIR|locus:2154739 AT5G53920 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 129/216 (59%), Positives = 149/216 (68%)

Query:     3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELF 62
             F PVE+ + LWIVPEW++PP  +A NIILNPG AFGTGEH TTK         IKGGE F
Sbjct:   165 FQPVEIAERLWIVPEWTSPPVAEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGEAF 224

Query:    63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
             LDYGTGSGIL IAA+KFGAA  VGVDIDP  I SA  NAALNNI  +K++LHL P     
Sbjct:   225 LDYGTGSGILAIAALKFGAASSVGVDIDPLAINSAIHNAALNNIPLEKLELHLAP----- 279

Query:   123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
                      +    S  EI    + E++DVVIANILLNP+  LADHI+S+ KPGA +GIS
Sbjct:   280 ---------IENSSSGREIP--LQKEQFDVVIANILLNPVMNLADHILSFVKPGATIGIS 328

Query:   183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
             GILSEQLP +  RYS FLEDI V+   DW C+SGTK
Sbjct:   329 GILSEQLPNVRERYSPFLEDISVATIGDWVCMSGTK 364

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

TIGR_CMR|VC_0293 VC_0293 "ribosomal protein L11 methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 54/119 (45%), Positives = 76/119 (63%)

Query:     1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             ++FHP++  + LWI P W   PD QA N++L+PGLAFGTG H TT             G+
Sbjct:   102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSGK 161

Query:    61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119
               +D+G GSGIL IAAIK GAA  +G+DIDPQ + ++  NAA N +   +I+++L  D+
Sbjct:   162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQ 219

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P0A8T1 prmA "methyltransferase for 50S ribosomal subunit protein L11" [Escherichia coli K-12 (taxid:83333)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 52/119 (43%), Positives = 74/119 (62%)

Query:     1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             ++FHP+   + LWI P W   PD  A N++L+PGLAFGTG H TT             G+
Sbjct:   101 DNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK 160

Query:    61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119
               +D+G GSGIL IAA+K GAA  +G+DIDPQ I+++  NA  N +  + ++L+L  D+
Sbjct:   161 TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDR-LELYLPKDQ 218

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA;IMP

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|CPS_0540 CPS_0540 "ribosomal protein L11 methyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 48/119 (40%), Positives = 75/119 (63%)

Query:     1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             ++FHP++  + LW+ P W   PD +A N++L+PGLAFGTG H TT              +
Sbjct:   102 DNFHPMKFGERLWVCPSWRDVPDPEAVNVMLDPGLAFGTGTHPTTALCLTWLDGLDLQDK 161

Query:    61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119
               +D+G GSGIL +AA+K GA   +G+DIDPQ ++++  NA  NN+  + ++L+L  D+
Sbjct:   162 TVVDFGCGSGILSLAALKLGAKKVIGIDIDPQALQASLANAERNNVSDR-LELYLPKDQ 219

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|SO_0395 SO_0395 "ribosomal protein L11 methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 50/119 (42%), Positives = 71/119 (59%)

Query:     1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             +++HP++  K LWI P W   PD  A N+IL+PGLAFGTG H TT              E
Sbjct:   101 DNYHPIQFGKRLWICPSWREVPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160

Query:    61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119
               +D+G GSGIL +AA+K GA    G+DID Q I ++  NA  N++  + ++L+L  D+
Sbjct:   161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASKANAERNDVADQ-LELYLPEDQ 218

GO:0006412 "translation" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|BA_4537 BA_4537 "ribosomal protein L11 methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 43/104 (41%), Positives = 59/104 (56%)

Query:     3 FHPVEVTKGLWIVPEWS--TPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             +HPV+++    IVP W   TP   +   I L+PG+AFGTG H TT          ++ G+
Sbjct:   118 YHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTTMCIRALEKTVQPGD 177

Query:    61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN 104
               +D GTGSG+L IAA K GA+     D+DP  ++SA  N  LN
Sbjct:   178 TIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLN 221

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_0447 GSU_0447 "ribosomal protein L11 methyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 47/122 (38%), Positives = 65/122 (53%)

Query:     1 ESFHPVEVTKGLWIVPEWST-PPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGG 59
             + F P  + + L I P W    P+     I L+PG+AFGTG H TT+          +  
Sbjct:   107 QHFVPTRIGRHLVIKPTWEPFAPEPGDQVIELDPGMAFGTGTHPTTRLCLEALETLGRPD 166

Query:    60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK--LHLVP 117
              + LD GTGSGIL IAA++ GA   +G DIDP  +  A +N ALN +  + +   L L+P
Sbjct:   167 RV-LDVGTGSGILAIAAVRLGARQVIGTDIDPDAVIVAGENCALNGVEVELVTTPLALIP 225

Query:   118 DR 119
              R
Sbjct:   226 GR 227

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CHY_0417 CHY_0417 "ribosomal protein L11 methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 194 (73.4 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 50/145 (34%), Positives = 75/145 (51%)

Query:     3 FHPVEVTKGLWIVPEWST-PPDVQATNII-LNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             F PVEV + L I P W   P   +   II ++PG+AFGTG H TT          +  G+
Sbjct:   112 FKPVEVGEFL-IKPTWEKLPSGKEDKKIIEIDPGMAFGTGTHVTTALVLEALPKYVSPGK 170

Query:    61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             + +D GTGSGIL IA+   GA     +DIDP  +K A +N ++N +   KI    V +  
Sbjct:   171 VVVDVGTGSGILAIASALLGAEKIYALDIDPVAVKVARENISINRL-EDKIT---VIEND 226

Query:   121 FTASMNERVDGVVEYLSSHEIRGIS 145
                  N+ VD ++  + +  I+ ++
Sbjct:   227 LLHGFNQTVDVIIANIIAAVIKELA 251

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_3320 GSU_3320 "ribosomal protein L11 methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 44/109 (40%), Positives = 56/109 (51%)

Query:     3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKG--GE 60
             F P  V  G  IVPE +  P  +   +I+    AFG+GEH TT          I G  G 
Sbjct:     6 FTPFTVG-GFIIVPEDAPLPLGEHIPLIMGKKGAFGSGEHETT-ASCLEELERIPGLTGM 63

Query:    61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK 109
               LD G+G+GIL IAA++ GAA  V VDIDP+   S   N  LN +  +
Sbjct:    64 RGLDLGSGTGILAIAAVRLGAASVVAVDIDPKAAASCAANVRLNGVADR 112

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CJE_1260 CJE_1260 "ribosomal protein L11 methyltransferase, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 133 (51.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
 Identities = 33/79 (41%), Positives = 41/79 (51%)

Query:    28 NIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMFVGV 87
             NI +NP LAFG+G H +T           K     LD G GSGILGI   KFG  + +  
Sbjct:   116 NIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGILGIIMAKFGCNVEI-C 174

Query:    88 DIDPQVIKSAHQNAALNNI 106
             D D   I S+ +NA LN +
Sbjct:   175 DTDELAIDSSLENARLNGV 193

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	3e-70
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	5e-69
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	3e-55
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	2e-48
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	1e-08
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	1e-07
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	2e-07
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	4e-07
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-07
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	1e-06
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	3e-06
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	4e-06
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-05
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	6e-05
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	7e-05
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	7e-04
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	0.001
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	0.002
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.002
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	0.002
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	0.004
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	0.004
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	0.004

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score =  214 bits (547), Expect = 3e-70
 Identities = 84/219 (38%), Positives = 116/219 (52%), Gaps = 32/219 (14%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           + FHP+ +   LWIVP W  PPD    NI L+PG+AFGTG H TT+LCL  L+ L+  G+
Sbjct: 62  KYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGK 121

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             LD G GSGIL IAA K GA   + VDIDPQ +++A +NA LN +   ++ ++L     
Sbjct: 122 TVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV---ELNVYLPQG-- 176

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                                       + DV++ANIL NPL +LA  +    KPG  + 
Sbjct: 177 --------------------------DLKADVIVANILANPLLELAPDLARLLKPGGRLI 210

Query: 181 ISGILSEQLPRIINRYSEFLEDIL-VSEKDDWRCVSGTK 218
           +SGIL EQ   ++  Y E    +  V E+ +W  + G K
Sbjct: 211 LSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249

Length = 250

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score =  212 bits (543), Expect = 5e-69
 Identities = 92/216 (42%), Positives = 124/216 (57%), Gaps = 27/216 (12%)

Query: 3   FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
           FHPV + + L IVP W   P+  A NI L+PG+AFGTG H TT LCL  L+SL+K GE  
Sbjct: 105 FHPVRIGERLTIVPSWEDYPEPDAVNIELDPGMAFGTGTHPTTALCLEALESLVKPGETV 164

Query: 63  LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
           LD G GSGIL IAA+K GA   VGVDIDP  +++A +NA LN +   +++++L       
Sbjct: 165 LDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEA-QLEVYL------- 216

Query: 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
                    + E              + DVV+ANIL +PL +LA  I +  KPG  + +S
Sbjct: 217 ------PGDLPE-------------GKADVVVANILADPLIELAPDIYALVKPGGYLILS 257

Query: 183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
           GIL EQ   +   YS+  E I V E+++W C+ G K
Sbjct: 258 GILEEQADDVAEAYSQGFELITVEEREEWVCIVGKK 293

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score =  177 bits (452), Expect = 3e-55
 Identities = 84/218 (38%), Positives = 112/218 (51%), Gaps = 26/218 (11%)

Query: 3   FHPVEVTKGLWIVPEWST-PPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
           FHPV + +   IVP W   P      NI L+PGLAFGTG H TT LCL  L+ L+K G+ 
Sbjct: 106 FHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKT 165

Query: 62  FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
            LD G GSGIL IAA K GA   VGVDIDPQ +++A +NA LN +               
Sbjct: 166 VLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGV--------------- 210

Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181
                E +     +L         E   +DV++ANIL   L +LA  I    KPG  + +
Sbjct: 211 -----ELLVQAKGFLLLEVP----ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLIL 261

Query: 182 SGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTK 218
           SGIL +Q   +   Y +   E + V E+++W  + G +
Sbjct: 262 SGILEDQAESVAEAYEQAGFEVVEVLEREEWVAIVGKR 299

Length = 300

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score =  159 bits (405), Expect = 2e-48
 Identities = 76/212 (35%), Positives = 108/212 (50%), Gaps = 26/212 (12%)

Query: 1   ESFHPVEVTKGLWIVPEW-STPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGG 59
           ++FHPV+  K  WI P W   P D  A  I+L+PGLAFGTG H TT LCL  L+ L    
Sbjct: 101 DNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKD 160

Query: 60  ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119
           +  +D G GSGIL IAA+K GAA  VG+DIDP  ++SA +NA LN +             
Sbjct: 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSD----------- 209

Query: 120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV 179
                   R+   + YL            + DV++ANIL   + +L        KPG  +
Sbjct: 210 --------RLQVKLIYLEQ------PIEGKADVIVANILAEVIKELYPQFSRLVKPGGWL 255

Query: 180 GISGILSEQLPRIINRYSEFLEDILVSEKDDW 211
            +SGIL  Q   + + Y +    + + ++++W
Sbjct: 256 ILSGILETQAQSVCDAYEQGFTVVEIRQREEW 287

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 50  LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP 108
           LL ++   K G+  L+ GTGSGI+ I A K      VGVDI+P  ++ A  NA LNNI  
Sbjct: 14  LLAENAVDKKGDRVLEVGTGSGIVAIVAAK-NGKKVVGVDINPYAVECAKCNAKLNNIRN 72

Query: 109 KKIK 112
             ++
Sbjct: 73  NGVE 76

Length = 188

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 50  LLLQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG 107
             L  L++  +  LD GTGSG + IA A +   A  + VDI P  +  A +NA  N + 
Sbjct: 102 AALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV 160

Length = 280

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 25/108 (23%)

Query: 50  LLLQSLIKGGELFLD---YGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
             L  L  G    L+   Y TG     + A   GA+    VD+  + ++ A +NA LN +
Sbjct: 210 RALGELAAGKR-VLNLFSY-TGGF--SVHAALGGASEVTSVDLSKRALEWARENAELNGL 265

Query: 107 GPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVI 154
              + +                V  V ++L   E RG    E++D++I
Sbjct: 266 DGDRHRF--------------IVGDVFKWLRKAERRG----EKFDLII 295

Length = 393

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 52  LQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK 110
           L+ L KG    LD GTGSG + +A A +   A    VDI P+ +  A +NAA   +    
Sbjct: 81  LERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL--DN 138

Query: 111 IKLHLVPDRTFTASMNERVDGVVE---YLSSHEIRGIS-ETEEYDVVIANIL------LN 160
           ++  L  D  F      + D +V    Y+   +I  +  E   ++  +A  L      L+
Sbjct: 139 VEF-LQSD-WFEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLA--LFGGEDGLD 194

Query: 161 PLPQLADHIVSYAKPGAVVGI 181
              ++        KPG  + +
Sbjct: 195 FYRRIIAQAPRLLKPGGWLLL 215

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 27/122 (22%)

Query: 62  FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
            LD G G+G L +A      A   GVDI P  ++ A + AA        +++        
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDAEEL 59

Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYA----KPGA 177
                                     E +DV+I++  L+ L +     +  A    KPG 
Sbjct: 60  P---------------------PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGG 98

Query: 178 VV 179
           V+
Sbjct: 99  VL 100

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 59  GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101
           G+  LD G G+GIL I A   GA+  + VDIDP+ ++ A  NA
Sbjct: 46  GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANA 88

Length = 198

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK 109
           L   L+K     LD GTGSG + +A A +   A    VDI P+ +  A +NA        
Sbjct: 101 LEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGA-- 158

Query: 110 KIKLHLVPDRTFTASMNERVDGVVE---YLSSHEI 141
             ++  +    F      R D +V    Y+   +I
Sbjct: 159 --RVEFLQGDWFEPLPGGRFDLIVSNPPYIPEADI 191

Length = 275

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 63  LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK 109
           LD G GSG++ IAA + GAA  V  DIDP + ++   NAA N +   
Sbjct: 84  LDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSIL 130

Length = 218

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 25/125 (20%)

Query: 59  GELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP 117
           G   LD G G+G L I   + F  A   GVD+ P++++ A +NA L        ++  V 
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP----RITFVQ 57

Query: 118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGA 177
                A                    +   E +D V        L +L D + S  KPG 
Sbjct: 58  GDAPDA--------------------LDLLEGFDAVFIGGGGGDLLELLDALASLLKPGG 97

Query: 178 VVGIS 182
            + ++
Sbjct: 98  RLVLN 102

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 26/129 (20%)

Query: 56  IKGGELFLDYGTGSGILG--IAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL 113
           +K G   LD G G+G L   +A      A  VG+DI  + I+ A +NA    +G + ++ 
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAK--KLGYENVEF 58

Query: 114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--PLPQLA-DHIV 170
                            G +E L   ++    E   +DVVI+N +LN  P P    + I+
Sbjct: 59  IQ---------------GDIEELPQLQL----EDNSFDVVISNEVLNHLPDPDKVLEEII 99

Query: 171 SYAKPGAVV 179
              KPG V+
Sbjct: 100 RVLKPGGVL 108

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 50  LLLQSLIKGGEL----FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN 104
           LL  +L   G       LD  TGSG L +AA   GA     VDI  + ++SA  NA L 
Sbjct: 24  LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA 82

Length = 223

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 50  LLLQSL--IKGGELFLDYGTGSGILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNI 106
           LLL  L    GG+  LD G G G+LG A  K         VDI+ + ++SA  N A N +
Sbjct: 22  LLLSHLPKPLGGK-VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL 80

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 49  LLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG 107
           LLL  +L     +  L+ G G+G++ I     G  + +  DI+P  +K   +NA LNN+G
Sbjct: 9   LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCI-LTTDINPFAVKELRENAKLNNVG 67

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 50  LLLQSLIK--GGELFLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
           +LL +          LD G G+G LG+  A +   A  VGV+I  +  + A +N ALN +
Sbjct: 34  ILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL 93

Length = 248

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 16/100 (16%)

Query: 56  IKGGELFLDYGTGSGILGIA-AIKFGAA-MFVGVDIDPQVIKSAHQNAALNNIGPKKIKL 113
           ++ G+  LD G G G      A + G     VG+D    ++  A +  A        ++ 
Sbjct: 17  VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-KERAAGLGPN--VEF 73

Query: 114 HL-------VPDRTFTASMNERVDGVVEYLSSHEIRGISE 146
                     PD +F A    R D V+++L     R ++E
Sbjct: 74  VRGDADGLPFPDGSFDAV---RSDRVLQHLEDPA-RALAE 109

Length = 241

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 27/121 (22%)

Query: 63  LDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
           LD G G+G L  A ++      + GVDI P  +++A +  A   +               
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLD------------- 47

Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL---NPLPQLADHIVSYAKPGAV 178
                 RV   V      +         +DVV+A+ +L        +  ++    KPG V
Sbjct: 48  ----AVRVRLDVLDAIDLDPGS------FDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97

Query: 179 V 179
           +
Sbjct: 98  L 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 50  LLLQSLI-KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNI 106
           LLL++L    G   LD G G G+LG+   K    A    VD++ + ++SA +N A N +
Sbjct: 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207

Length = 300

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 43/199 (21%), Positives = 63/199 (31%), Gaps = 51/199 (25%)

Query: 32  NPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDP 91
           +P L+    E A        +  L+K GE  LD   G G   I   K G      +DI+P
Sbjct: 172 SPRLS---TERA-------RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP 221

Query: 92  QVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE--YLSSHEIRGISETEE 149
             ++   +N  LN                       +V+G VE     + E+    E   
Sbjct: 222 DAVEYLKENIRLN-----------------------KVEGRVEPILGDAREV--APELGV 256

Query: 150 YDVVIANILLNPLPQLADHIVSYA----KPGAVVGISGILSEQLP--RIINRYSEFLEDI 203
            D +I       LP+ A   +  A    K G ++     + E     R   R        
Sbjct: 257 ADRIIMG-----LPKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311

Query: 204 LVS-EKDDWRCVSGTKFSP 221
               E    R V    +SP
Sbjct: 312 GYKVEVLKVRRVK--SYSP 328

Length = 341

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 27  TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFV- 85
           + +  +P L    GE          +  L+K GE+ +D   G G   I   K   A  V 
Sbjct: 79  SKVYFSPRLI---GERER-------IAKLVKEGEVVVDMFAGIGPFSIPIAKHSKAKRVY 128

Query: 86  GVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
            V+++P+ +K   +N  LN +    I   L   R   
Sbjct: 129 AVELNPEAVKYLKENIKLNKVE-GVISPILGDVRDVI 164

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 59  GELFLDYGTGSGILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNIGP 108
           G+  LD G GSG   +AA + G  A  VGV++DP+    A +  AL  + P
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAP 51

This family contains methyltransferase domains. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	100.0
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	100.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.96
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.96
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.78
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.74
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.7
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.69
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.68
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.67
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.66
COG4123	248	Predicted O-methyltransferase [General function pr	99.66
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.65
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.65
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.65
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.64
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.64
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.64
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.64
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.64
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.63
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.63
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.63
PRK14967	223	putative methyltransferase; Provisional	99.62
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.62
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.61
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.61
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.61
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.61
PLN02244	340	tocopherol O-methyltransferase	99.61
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.6
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.6
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.59
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.59
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.59
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.59
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.58
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.57
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.57
PRK11207	197	tellurite resistance protein TehB; Provisional	99.57
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.56
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.56
COG2890	280	HemK Methylase of polypeptide chain release factor	99.55
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.55
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.55
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.54
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.54
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.54
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.53
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.53
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.52
PRK14968	188	putative methyltransferase; Provisional	99.52
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.52
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.52
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.52
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.51
PRK12335	287	tellurite resistance protein TehB; Provisional	99.51
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.51
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.51
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.5
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.5
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.49
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.48
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.48
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.48
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.48
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.47
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.47
PRK07402	196	precorrin-6B methylase; Provisional	99.47
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.47
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.47
PLN02336	475	phosphoethanolamine N-methyltransferase	99.46
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.46
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.46
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.46
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.46
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.45
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.45
KOG1271	227	consensus Methyltransferases [General function pre	99.44
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.44
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.44
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.43
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.43
PLN02490	340	MPBQ/MSBQ methyltransferase	99.42
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.42
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.42
PRK04457	262	spermidine synthase; Provisional	99.4
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.4
PRK04266	226	fibrillarin; Provisional	99.4
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.4
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.4
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.4
PRK06922	677	hypothetical protein; Provisional	99.4
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.39
PLN03075	296	nicotianamine synthase; Provisional	99.39
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.39
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.39
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.39
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.38
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.38
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.38
PRK05785	226	hypothetical protein; Provisional	99.38
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.37
PRK08317	241	hypothetical protein; Provisional	99.36
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.36
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.36
PRK00811	283	spermidine synthase; Provisional	99.35
PLN02672	1082	methionine S-methyltransferase	99.35
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.35
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.34
PHA03412	241	putative methyltransferase; Provisional	99.34
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.34
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.33
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.33
TIGR00438	188	rrmJ cell division protein FtsJ.	99.33
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.32
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.32
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.31
KOG2904	328	consensus Predicted methyltransferase [General fun	99.31
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.31
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.3
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.29
PHA03411	279	putative methyltransferase; Provisional	99.29
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.29
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.28
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.28
PLN02366	308	spermidine synthase	99.28
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.28
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.27
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.27
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.26
COG2520	341	Predicted methyltransferase [General function pred	99.26
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.25
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.25
PRK06202	232	hypothetical protein; Provisional	99.25
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.24
PTZ00146	293	fibrillarin; Provisional	99.24
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.23
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.23
PLN02476	278	O-methyltransferase	99.23
PLN02336	475	phosphoethanolamine N-methyltransferase	99.23
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.22
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.22
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.22
COG4122	219	Predicted O-methyltransferase [General function pr	99.22
KOG4300	252	consensus Predicted methyltransferase [General fun	99.21
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.21
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.2
TIGR03438	301	probable methyltransferase. This model represents	99.2
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.19
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.19
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.17
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.17
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.17
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.15
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.15
PRK03612	521	spermidine synthase; Provisional	99.15
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.15
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.14
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.13
KOG3010	261	consensus Methyltransferase [General function pred	99.12
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.12
PRK01581	374	speE spermidine synthase; Validated	99.11
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.09
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.08
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.08
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.07
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.07
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.07
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.06
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.04
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.03
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.02
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.02
PLN02823	336	spermine synthase	99.01
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.01
COG2521	287	Predicted archaeal methyltransferase [General func	98.96
KOG2899	288	consensus Predicted methyltransferase [General fun	98.96
KOG2361	264	consensus Predicted methyltransferase [General fun	98.92
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.92
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.91
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.89
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.87
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.86
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.86
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.85
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.84
PRK00536	262	speE spermidine synthase; Provisional	98.83
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.81
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.81
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.79
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.78
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.78
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.76
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.75
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.73
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.73
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.71
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.68
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.68
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.68
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.67
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.67
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.64
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.63
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.63
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.63
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.62
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.61
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.59
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.54
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.51
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.51
KOG2940	325	consensus Predicted methyltransferase [General fun	98.5
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.46
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.43
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.41
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.38
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.38
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.38
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.36
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.33
PRK04148	134	hypothetical protein; Provisional	98.33
COG4076	252	Predicted RNA methylase [General function predicti	98.33
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.32
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.31
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.3
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.23
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.21
COG0286	489	HsdM Type I restriction-modification system methyl	98.19
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.18
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.17
COG3897	218	Predicted methyltransferase [General function pred	98.14
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.12
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.12
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.11
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	98.11
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.08
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.04
PF13679	141	Methyltransf_32: Methyltransferase domain	97.97
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.9
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.9
KOG2730	263	consensus Methylase [General function prediction o	97.84
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.81
PRK10742	250	putative methyltransferase; Provisional	97.81
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.79
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.78
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.75
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.69
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.67
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.65
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.64
KOG1331	293	consensus Predicted methyltransferase [General fun	97.64
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.63
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.57
PRK11524	284	putative methyltransferase; Provisional	97.56
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.47
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.44
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.44
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.43
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.39
KOG3115	249	consensus Methyltransferase-like protein [General	97.38
PRK13699	227	putative methylase; Provisional	97.38
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.36
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.34
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.33
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.26
PHA01634	156	hypothetical protein	97.25
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.23
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	97.14
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.12
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.03
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.92
KOG1227	351	consensus Putative methyltransferase [General func	96.9
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.88
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.86
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.82
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.81
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.79
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.76
TIGR00497	501	hsdM type I restriction system adenine methylase (	96.75
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.72
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.49
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	96.42
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.39
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.28
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.11
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.98
COG4798	238	Predicted methyltransferase [General function pred	95.98
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.91
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.85
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.59
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.48
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.46
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.08
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.99
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.65
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.53
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	94.43
COG1568	354	Predicted methyltransferases [General function pre	94.39
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.33
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.31
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.28
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.25
KOG2912	419	consensus Predicted DNA methylase [Function unknow	94.06
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	93.91
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.77
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.75
COG0863	302	DNA modification methylase [DNA replication, recom	93.51
PRK11524	284	putative methyltransferase; Provisional	93.48
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.45
PRK10458	467	DNA cytosine methylase; Provisional	93.35
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.3
PRK13699	227	putative methylase; Provisional	93.27
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.05
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	92.91
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.89
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.83
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	92.81
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.77
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.77
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.68
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.62
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.53
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	92.39
COG1565	370	Uncharacterized conserved protein [Function unknow	91.85
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	91.85
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.6
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.44
PLN02740	381	Alcohol dehydrogenase-like	91.41
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	91.32
COG4301	321	Uncharacterized conserved protein [Function unknow	91.28
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	91.18
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.99
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	90.71
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	90.7
PLN02827	378	Alcohol dehydrogenase-like	90.54
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	90.51
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	90.46
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	90.44
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	90.37
KOG2920	282	consensus Predicted methyltransferase [General fun	90.36
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	90.29
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	90.27
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	90.14
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	90.13
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	89.91
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.83
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.46
PF03269	177	DUF268: Caenorhabditis protein of unknown function	89.34
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	88.98
PLN02586	360	probable cinnamyl alcohol dehydrogenase	88.89
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.62
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	88.41
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	87.84
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	87.8
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.56
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	87.32
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	87.31
KOG3924	419	consensus Putative protein methyltransferase invol	87.26
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.09
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	86.5
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	86.48
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	86.39
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	86.27
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	86.19
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	86.07
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	86.03
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.99
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	85.53
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	85.35
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	85.25
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	85.08
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	84.81
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	84.77
COG2933	358	Predicted SAM-dependent methyltransferase [General	84.72
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	84.63
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	84.37
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	84.05
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	83.98
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	83.93
PLN02514	357	cinnamyl-alcohol dehydrogenase	83.55
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	83.5
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	83.14
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	83.06
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.43
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	82.28
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	81.86
PRK10669	558	putative cation:proton antiport protein; Provision	81.83
PRK03562	621	glutathione-regulated potassium-efflux system prot	81.63
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	81.57
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	81.51
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	81.39
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	81.37
PRK07904	253	short chain dehydrogenase; Provisional	81.14
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	80.73
PLN02494	477	adenosylhomocysteinase	80.73
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	80.71
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	80.57
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	80.55
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	80.45
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	80.33
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	80.23
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	80.17

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=100.00  E-value=2.6e-34  Score=242.31  Aligned_cols=192  Identities=41%  Similarity=0.667  Sum_probs=163.4

Q ss_pred             CCccceEeccceeeeecCCCCCC-CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh
Q 047371            1 ESFHPVEVTKGLWIVPEWSTPPD-VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF   79 (222)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~   79 (222)
                      ++|+|++++++++++|+|.+.+. .+...+.++|+++||+|+|+++++++++|.++..++++|||+|||+|.+++.+++.
T Consensus       103 ~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl  182 (295)
T PF06325_consen  103 KYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL  182 (295)
T ss_dssp             HH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT
T ss_pred             hcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc
Confidence            37999999999999999999965 67889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc
Q 047371           80 GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus        80 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                      |..+|+|+|++|.+++.|++|+..|++.. ++.+.  .....                        ...+||+|++|...
T Consensus       183 GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~--~~~~~------------------------~~~~~dlvvANI~~  235 (295)
T PF06325_consen  183 GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVS--LSEDL------------------------VEGKFDLVVANILA  235 (295)
T ss_dssp             TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEES--CTSCT------------------------CCS-EEEEEEES-H
T ss_pred             CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEE--Eeccc------------------------ccccCCEEEECCCH
Confidence            99999999999999999999999999973 55442  11111                        35789999999998


Q ss_pred             ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhcceecccCCceEeecccC
Q 047371          160 NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF  219 (222)
Q Consensus       160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~  219 (222)
                      +.+..++..+.++|+|||+++++++..++..++.+.+.++|...+....++|.++..+|+
T Consensus       236 ~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~~~~W~~l~~~Kk  295 (295)
T PF06325_consen  236 DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEEREEGEWVALVFKKK  295 (295)
T ss_dssp             HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEEETTEEEEEEEE-
T ss_pred             HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEeC
Confidence            888999999999999999999999999999999999988888899999999999999885

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.8e-34  Score=238.30  Aligned_cols=195  Identities=42%  Similarity=0.678  Sum_probs=173.6

Q ss_pred             CCccceEeccceeeeecCCCCCCC-cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh
Q 047371            1 ESFHPVEVTKGLWIVPEWSTPPDV-QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF   79 (222)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~   79 (222)
                      ++|+|++++.|.+++|+|.+.+.. ...+++++|+++||+|.|+++.+++++|.++.++|+++||+|||+|.+++.+++.
T Consensus       104 ~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL  183 (300)
T COG2264         104 KYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL  183 (300)
T ss_pred             hcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc
Confidence            579999999999999999988777 7899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc
Q 047371           80 GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus        80 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                      |...++|+|++|-+++.|+.|+..|++.. .+.....+....                       ...++||+|++|-.-
T Consensus       184 GA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~~~~~~~~-----------------------~~~~~~DvIVANILA  239 (300)
T COG2264         184 GAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAKGFLLLEV-----------------------PENGPFDVIVANILA  239 (300)
T ss_pred             CCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcccccchhh-----------------------cccCcccEEEehhhH
Confidence            99999999999999999999999999862 122222211111                       134689999999988


Q ss_pred             ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh-hhhcceecccCCceEeecccC
Q 047371          160 NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE-FLEDILVSEKDDWRCVSGTKF  219 (222)
Q Consensus       160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~k~  219 (222)
                      +.+..++..+.+.+||||+++++++..++.+.+.+.+.. +|...+....++|+++..+|.
T Consensus       240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~  300 (300)
T COG2264         240 EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAIVGKRK  300 (300)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence            888899999999999999999999999999999999955 699999999999999999874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.96  E-value=1e-28  Score=209.32  Aligned_cols=187  Identities=40%  Similarity=0.696  Sum_probs=163.6

Q ss_pred             CCccceEeccceeeeecCCCCC-CCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh
Q 047371            1 ESFHPVEVTKGLWIVPEWSTPP-DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF   79 (222)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~   79 (222)
                      ++|+|+.++++++++|+|.+.. ......+.++|+..|++|.|++++++++++..+..++++|||+|||+|.+++.+++.
T Consensus       101 ~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~  180 (288)
T TIGR00406       101 DNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL  180 (288)
T ss_pred             HhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc
Confidence            4899999999999999998875 457889999999999999999999999999888888999999999999999988888


Q ss_pred             CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc
Q 047371           80 GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus        80 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                      +..+++|+|+++.+++.|++++..+++. .++.....+....                        ..++||+|++|...
T Consensus       181 g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~~~~------------------------~~~~fDlVvan~~~  235 (288)
T TIGR00406       181 GAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYLEQP------------------------IEGKADVIVANILA  235 (288)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecccccc------------------------cCCCceEEEEecCH
Confidence            7789999999999999999999888775 3444444332111                        35689999999988


Q ss_pred             ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhcceecccCCce
Q 047371          160 NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWR  212 (222)
Q Consensus       160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  212 (222)
                      +.+..++..+.+.|||||+++++++...+..++.+.+...|...+....++|.
T Consensus       236 ~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~~~~~W~  288 (288)
T TIGR00406       236 EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIRQREEWC  288 (288)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEeccCCCC
Confidence            87888999999999999999999999999999999998888888888899984

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.96  E-value=5.6e-28  Score=200.94  Aligned_cols=188  Identities=45%  Similarity=0.754  Sum_probs=164.5

Q ss_pred             CCccceEeccceeeeecCCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC
Q 047371            1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG   80 (222)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~   80 (222)
                      ++|+|++++++++++|+|..+.......+.++|+++|++|.|+++..+++.+.....++.+|||+|||+|.+++.+++.+
T Consensus        62 ~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g  141 (250)
T PRK00517         62 KYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG  141 (250)
T ss_pred             HHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC
Confidence            47999999999999999998866788999999999999999999999999998888889999999999999999888877


Q ss_pred             CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc
Q 047371           81 AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN  160 (222)
Q Consensus        81 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~  160 (222)
                      ..+++|+|+++.+++.|++++..+++. .++.+..                              .+.+||+|++|...+
T Consensus       142 ~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~------------------------------~~~~fD~Vvani~~~  190 (250)
T PRK00517        142 AKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQ------------------------------GDLKADVIVANILAN  190 (250)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEcc------------------------------CCCCcCEEEEcCcHH
Confidence            677999999999999999999887763 2232211                              122699999998777


Q ss_pred             cHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceEeecccC
Q 047371          161 PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTKF  219 (222)
Q Consensus       161 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~  219 (222)
                      .+..+++++.+.|||||.++++++...+..++.+.+... |........++|.++..+|+
T Consensus       191 ~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~~  250 (250)
T PRK00517        191 PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKKK  250 (250)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEeC
Confidence            788899999999999999999999888888998888876 88888899999999998874

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.78  E-value=2.7e-17  Score=129.15  Aligned_cols=157  Identities=25%  Similarity=0.354  Sum_probs=110.7

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      .++...|+..-.....+.+.++.+.+...  ++.+|||+|||+|.+++.+++.. ..+++++|+++.+++.+++++..++
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~   79 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG   79 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence            34566666543333345677777777655  78899999999999999999864 4479999999999999999999999


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCe
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGA  177 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG  177 (222)
                      +.  ++++...|.....                       +.++||+|++|||++.        ..++++.+.++|||||
T Consensus        80 ~~--~v~~~~~d~~~~~-----------------------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G  134 (170)
T PF05175_consen   80 LE--NVEVVQSDLFEAL-----------------------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG  134 (170)
T ss_dssp             CT--TEEEEESSTTTTC-----------------------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred             cc--ccccccccccccc-----------------------cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence            86  4778777653321                       4688999999999853        4668999999999999


Q ss_pred             EEEEecCCCCcHHHHHHHHHhhhhcceec-ccCCceE
Q 047371          178 VVGISGILSEQLPRIINRYSEFLEDILVS-EKDDWRC  213 (222)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~  213 (222)
                      .+++..........+   +++.|...++. +.++|..
T Consensus       135 ~l~lv~~~~~~~~~~---l~~~f~~~~~~~~~~~~~v  168 (170)
T PF05175_consen  135 RLFLVINSHLGYERL---LKELFGDVEVVAKNKGFRV  168 (170)
T ss_dssp             EEEEEEETTSCHHHH---HHHHHS--EEEEEESSEEE
T ss_pred             EEEEEeecCCChHHH---HHHhcCCEEEEEECCCEEE
Confidence            998753333333333   56666655553 4455543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.74  E-value=6e-17  Score=132.63  Aligned_cols=119  Identities=18%  Similarity=0.307  Sum_probs=101.7

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+|.+|||+|||||.++..+++. +.++|+|+|+|+.|++.|++.....+..  ++.++.+|++.+++            
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LPf------------  115 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLPF------------  115 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCCC------------
Confidence            37999999999999999999875 6789999999999999999999887776  49999999998876            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                ++++||++.+...+.+   +...|+++.|.|||||.+++.++.......+...+..+
T Consensus       116 ----------~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~  172 (238)
T COG2226         116 ----------PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY  172 (238)
T ss_pred             ----------CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence                      8999999999887765   56789999999999999999777666555555555443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.70  E-value=3e-16  Score=114.18  Aligned_cols=103  Identities=31%  Similarity=0.450  Sum_probs=83.9

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      |+.+|||+|||+|.++..+++ .+..+++|+|+++.+++.|++++...+.. .++++...+. ....             
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~-~~~~-------------   65 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDA-EFDP-------------   65 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCC-HGGT-------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECcc-ccCc-------------
Confidence            588999999999999999998 46789999999999999999999666655 5899999888 2211             


Q ss_pred             ccccccCCCCCCCeeEEEecc-cccc------HHHHHHHHHHcccCCeEEEEec
Q 047371          137 SSHEIRGISETEEYDVVIANI-LLNP------LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~-~~~~------~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              ...++||+|++.. ..+.      ...+++.+.+.|+|||++++..
T Consensus        66 --------~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   66 --------DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             --------TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence                    1456799999988 3332      2457999999999999999863

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.69  E-value=3.7e-16  Score=128.51  Aligned_cols=120  Identities=18%  Similarity=0.269  Sum_probs=85.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++|.+|||+|||+|.++..+++.  +..+|+|+|+|+.|++.|+++....+..  ++++...|++.+++          
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v~~da~~lp~----------  112 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFVQGDAEDLPF----------  112 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S----------
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEEEcCHHHhcC----------
Confidence            457899999999999999998875  3479999999999999999999887765  89999999988765          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                  ++++||+|++...++.   ....+++++|+|||||.+++.++......-+...+.-+
T Consensus       113 ------------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y  169 (233)
T PF01209_consen  113 ------------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFY  169 (233)
T ss_dssp             -------------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-
T ss_pred             ------------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeee
Confidence                        7899999999877654   56689999999999999998766554444444444444

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.68  E-value=3.5e-15  Score=129.16  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=115.8

Q ss_pred             CCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHH
Q 047371           23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      ......+...|+..+..+....+.++++.+...  ...+|||+|||+|.++..+++. +..+++++|+++.+++.|++++
T Consensus       163 ~~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl  240 (342)
T PRK09489        163 QVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL  240 (342)
T ss_pred             ecCCEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            344456777777766655666777777766432  3457999999999999998876 4568999999999999999999


Q ss_pred             HhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcc
Q 047371          102 ALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYA  173 (222)
Q Consensus       102 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~L  173 (222)
                      ..+++.   ..+...|....                        ..++||+|++|+|+|.        ...++.++.++|
T Consensus       241 ~~n~l~---~~~~~~D~~~~------------------------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L  293 (342)
T PRK09489        241 AANGLE---GEVFASNVFSD------------------------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL  293 (342)
T ss_pred             HHcCCC---CEEEEcccccc------------------------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhc
Confidence            888764   23444443211                        3567999999999975        356899999999


Q ss_pred             cCCeEEEEecCCCCcHHHHHHHHHhhhhccee-cccCCceEeecccC
Q 047371          174 KPGAVVGISGILSEQLPRIINRYSEFLEDILV-SEKDDWRCVSGTKF  219 (222)
Q Consensus       174 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~k~  219 (222)
                      ||||.+++.....-.-.   +.+++.|...+. ...+.|..+.++|-
T Consensus       294 kpgG~L~iVan~~l~y~---~~l~~~Fg~~~~la~~~~f~v~~a~~~  337 (342)
T PRK09489        294 NSGGELRIVANAFLPYP---DLLDETFGSHEVLAQTGRFKVYRAIMT  337 (342)
T ss_pred             CcCCEEEEEEeCCCChH---HHHHHHcCCeEEEEeCCCEEEEEEEcc
Confidence            99999988643222222   233333444443 46677777777653

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=2.7e-15  Score=125.54  Aligned_cols=163  Identities=19%  Similarity=0.256  Sum_probs=118.7

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ....|.-.|+..-....-..++++++.|...  .+.+|||+|||.|-+++.+++. +..+++-+|+|..+++.|++|+..
T Consensus       127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~  204 (300)
T COG2813         127 HELTFKTLPGVFSRDKLDKGSRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA  204 (300)
T ss_pred             CceEEEeCCCCCcCCCcChHHHHHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence            3455666666544333444667666666433  3449999999999999999986 568999999999999999999999


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccC
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKP  175 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~Lkp  175 (222)
                      |+++  +..+...+...-                        -.++||+|++|||+|.        -..++..+.++|++
T Consensus       205 N~~~--~~~v~~s~~~~~------------------------v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~  258 (300)
T COG2813         205 NGVE--NTEVWASNLYEP------------------------VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP  258 (300)
T ss_pred             cCCC--ccEEEEeccccc------------------------ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc
Confidence            9886  333333322111                        1338999999999986        23689999999999


Q ss_pred             CeEEEEecCCCCcHHHHHHHHHhhhhcce-ecccCCceEeeccc
Q 047371          176 GAVVGISGILSEQLPRIINRYSEFLEDIL-VSEKDDWRCVSGTK  218 (222)
Q Consensus       176 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k  218 (222)
                      ||.+.+...   ........+.+.|...+ +.+.+++..+..+|
T Consensus       259 gGeL~iVan---~~l~y~~~L~~~Fg~v~~la~~~gf~Vl~a~k  299 (300)
T COG2813         259 GGELWIVAN---RHLPYEKKLKELFGNVEVLAKNGGFKVLRAKK  299 (300)
T ss_pred             CCEEEEEEc---CCCChHHHHHHhcCCEEEEEeCCCEEEEEEec
Confidence            999998643   44456667777777554 56778888777765

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.66  E-value=1.1e-14  Score=123.33  Aligned_cols=145  Identities=15%  Similarity=0.190  Sum_probs=107.7

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ..+.++|+.-+  ....+..++...+...+  +++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++++..
T Consensus        90 ~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~  167 (284)
T TIGR03533        90 LEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER  167 (284)
T ss_pred             cEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            56788887554  23446666666665433  34578999999999999999875 457999999999999999999998


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------  161 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------  161 (222)
                      +++. .++.+...|....                      . +.++||+|++|||+..                      
T Consensus       168 ~~~~-~~i~~~~~D~~~~----------------------~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg  223 (284)
T TIGR03533       168 HGLE-DRVTLIQSDLFAA----------------------L-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASG  223 (284)
T ss_pred             cCCC-CcEEEEECchhhc----------------------c-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCC
Confidence            8875 4788887765321                      0 3457999999998632                      


Q ss_pred             ------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          162 ------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       162 ------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                            +..++..+.++|+|||.+++. ....+ .++.+.+...
T Consensus       224 ~dGl~~~~~il~~a~~~L~~gG~l~~e-~g~~~-~~v~~~~~~~  265 (284)
T TIGR03533       224 EDGLDLVRRILAEAADHLNENGVLVVE-VGNSM-EALEEAYPDV  265 (284)
T ss_pred             CcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcCH-HHHHHHHHhC
Confidence                  245688999999999999985 33333 5777777664

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.66  E-value=1.7e-15  Score=124.24  Aligned_cols=121  Identities=26%  Similarity=0.369  Sum_probs=102.8

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +...+|||+|||+|.+++.+++. ...+++|+|+++++.+.|+++++.++++ +++++...|...+..            
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~------------  109 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLK------------  109 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhh------------
Confidence            34789999999999999999986 5589999999999999999999999987 699999999876631            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN  194 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (222)
                              .....+||+|+||||+..                     +.++++.+.++|||||.+++. ...+...++.+
T Consensus       110 --------~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-~r~erl~ei~~  180 (248)
T COG4123         110 --------ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-HRPERLAEIIE  180 (248)
T ss_pred             --------cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-ecHHHHHHHHH
Confidence                    013447999999999853                     456899999999999999997 67788888888


Q ss_pred             HHHhh
Q 047371          195 RYSEF  199 (222)
Q Consensus       195 ~~~~~  199 (222)
                      .+..+
T Consensus       181 ~l~~~  185 (248)
T COG4123         181 LLKSY  185 (248)
T ss_pred             HHHhc
Confidence            88874

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.65  E-value=1.3e-14  Score=123.99  Aligned_cols=163  Identities=15%  Similarity=0.156  Sum_probs=117.0

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhhcC-C-CcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKG-G-ELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~-~-~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ..+.++|+.-+  ...++..++...+...++. + .+|||+|||+|.+++.++.. +..+++++|+|+.+++.|++++..
T Consensus       102 ~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~  179 (307)
T PRK11805        102 LEFYVDERVLV--PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER  179 (307)
T ss_pred             cEEEECCCCcC--CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            56778887643  3444666666665544332 3 68999999999999998875 567999999999999999999998


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------  161 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------  161 (222)
                      +++. .++.+...|.....                       +.++||+|++|||+..                      
T Consensus       180 ~~l~-~~i~~~~~D~~~~l-----------------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg  235 (307)
T PRK11805        180 HGLE-DRVTLIESDLFAAL-----------------------PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAG  235 (307)
T ss_pred             hCCC-CcEEEEECchhhhC-----------------------CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCC
Confidence            8875 36888877753210                       3457999999998632                      


Q ss_pred             ------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceEeecc
Q 047371          162 ------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGT  217 (222)
Q Consensus       162 ------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~  217 (222)
                            +..++..+.++|+|||.+++. .... ..++.+.+... +........+.|..+..+
T Consensus       236 ~dGl~~~~~i~~~a~~~L~pgG~l~~E-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (307)
T PRK11805        236 DDGLDLVRRILAEAPDYLTEDGVLVVE-VGNS-RVHLEEAYPDVPFTWLEFENGGDGVFLLTR  296 (307)
T ss_pred             CchHHHHHHHHHHHHHhcCCCCEEEEE-ECcC-HHHHHHHHhhCCCEEEEecCCCceEEEEEH
Confidence                  245789999999999999985 3333 34566666553 445566666777666554

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.65  E-value=9.6e-15  Score=115.80  Aligned_cols=114  Identities=17%  Similarity=0.205  Sum_probs=93.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+|||+|||+|.++..++.. +..+|+|+|.++.+++.+++++..+++.  ++++...+...+.              
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~--~i~~i~~d~~~~~--------------  105 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN--NVEIVNGRAEDFQ--------------  105 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC--CeEEEecchhhcc--------------
Confidence            4889999999999999988765 4578999999999999999998888764  6888888765431              


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                               ..++||+|+++. ++++.++++.+.++|+|||.+++. .......++....+.
T Consensus       106 ---------~~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~  156 (181)
T TIGR00138       106 ---------HEEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK  156 (181)
T ss_pred             ---------ccCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence                     356899999987 667888999999999999999986 455666666666555

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.65  E-value=1.5e-14  Score=115.09  Aligned_cols=132  Identities=14%  Similarity=0.184  Sum_probs=101.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +.++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+++.  ++++...+....             
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~~-------------   93 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG--NIDIIPGEAPIE-------------   93 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEEecCchhh-------------
Confidence            457889999999999999988875 4578999999999999999999877764  677776654211             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce--ecccCCc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL--VSEKDDW  211 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~w  211 (222)
                                 ..++||+|+++.....+..+++.+.+.|+|||++++......+..++.+.+++. +..++  ....+.|
T Consensus        94 -----------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  162 (187)
T PRK08287         94 -----------LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSL  162 (187)
T ss_pred             -----------cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEee
Confidence                       235799999987766788899999999999999999766677777887777764 44333  2334445


Q ss_pred             eE
Q 047371          212 RC  213 (222)
Q Consensus       212 ~~  213 (222)
                      ..
T Consensus       163 ~~  164 (187)
T PRK08287        163 TP  164 (187)
T ss_pred             eE
Confidence            43

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.64  E-value=1.3e-14  Score=126.60  Aligned_cols=148  Identities=15%  Similarity=0.175  Sum_probs=105.2

Q ss_pred             chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCC-CceeEEecCCcc
Q 047371           43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGP-KKIKLHLVPDRT  120 (222)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~v~~~~~~~~~  120 (222)
                      ..++++++.+...  .+.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|++++..++... .++++...|...
T Consensus       215 ~GtrllL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~  292 (378)
T PRK15001        215 IGARFFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  292 (378)
T ss_pred             hHHHHHHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence            3566655555321  2458999999999999998875 56799999999999999999998776431 256666655422


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                      .          +             +..+||+|++|||++.        ..+++..+.++|+|||.+++.....   ...
T Consensus       293 ~----------~-------------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~---l~y  346 (378)
T PRK15001        293 G----------V-------------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH---LDY  346 (378)
T ss_pred             c----------C-------------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC---cCH
Confidence            1          0             3457999999999874        2467899999999999999974322   223


Q ss_pred             HHHHHhhhhcceec-ccCCceEeeccc
Q 047371          193 INRYSEFLEDILVS-EKDDWRCVSGTK  218 (222)
Q Consensus       193 ~~~~~~~~~~~~~~-~~~~w~~~~~~k  218 (222)
                      ...+++.|...+.. ....+..+.++|
T Consensus       347 ~~~L~~~fg~~~~va~~~kf~vl~a~k  373 (378)
T PRK15001        347 FHKLKKIFGNCTTIATNNKFVVLKAVK  373 (378)
T ss_pred             HHHHHHHcCCceEEccCCCEEEEEEEe
Confidence            35555556555553 556667776666

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=5.8e-15  Score=123.17  Aligned_cols=135  Identities=21%  Similarity=0.356  Sum_probs=105.2

Q ss_pred             ceeEEeCCCcccccCCcchh--------HHHHHHH-Hhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHH
Q 047371           26 ATNIILNPGLAFGTGEHATT--------KLCLLLL-QSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIK   95 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~--------~~~~~~l-~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~   95 (222)
                      .+.+.++|...|++...+..        ....+.+ .++ ++||++|||+|||.|.+++.+|+....+|+|+++|+++.+
T Consensus        30 fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~  109 (283)
T COG2230          30 FYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLA  109 (283)
T ss_pred             HHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHH
Confidence            45556666665554444322        2223333 333 7899999999999999999999875689999999999999


Q ss_pred             HHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHH
Q 047371           96 SAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIV  170 (222)
Q Consensus        96 ~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~  170 (222)
                      .+++++...|++ .++++...|...+                         .++||-|++-.++++     +..+++.+.
T Consensus       110 ~~~~r~~~~gl~-~~v~v~l~d~rd~-------------------------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~  163 (283)
T COG2230         110 YAEKRIAARGLE-DNVEVRLQDYRDF-------------------------EEPFDRIVSVGMFEHVGKENYDDFFKKVY  163 (283)
T ss_pred             HHHHHHHHcCCC-cccEEEecccccc-------------------------ccccceeeehhhHHHhCcccHHHHHHHHH
Confidence            999999999987 5888888877654                         344999999888876     567999999


Q ss_pred             HcccCCeEEEEecCCC
Q 047371          171 SYAKPGAVVGISGILS  186 (222)
Q Consensus       171 ~~LkpgG~l~~~~~~~  186 (222)
                      +.|+|||.+++.++..
T Consensus       164 ~~L~~~G~~llh~I~~  179 (283)
T COG2230         164 ALLKPGGRMLLHSITG  179 (283)
T ss_pred             hhcCCCceEEEEEecC
Confidence            9999999999865543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.64  E-value=5e-15  Score=122.98  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHH---hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK---FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      ...++..++...++++.+|||+|||+|..+..+++   .+..+++|+|+|+.+++.|++++...+.. .++++...+...
T Consensus        42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~~~d~~~  120 (247)
T PRK15451         42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIRD  120 (247)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEeCChhh
Confidence            34444444555567889999999999999988876   25679999999999999999998876654 378888877654


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      .                        +...+|+|+++..++++     ..+++++++.|||||.+++.+.
T Consensus       121 ~------------------------~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        121 I------------------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             C------------------------CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            4                        33458999998877663     4589999999999999999754

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.64  E-value=1.2e-14  Score=114.90  Aligned_cols=128  Identities=21%  Similarity=0.272  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      .++.+.+..  .++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++..++.   ++.+...|....    
T Consensus         9 ~~l~~~l~~--~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~----   78 (179)
T TIGR00537         9 LLLEANLRE--LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKG----   78 (179)
T ss_pred             HHHHHHHHh--cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC---ceEEEEcccccc----
Confidence            444444432  3567899999999999999988764 899999999999999999887664   456666654322    


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEecccccc------------------------HHHHHHHHHHcccCCeEEEE
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                                          ..++||+|++|+|+++                        +..+++++.++|||||.+++
T Consensus        79 --------------------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~  138 (179)
T TIGR00537        79 --------------------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL  138 (179)
T ss_pred             --------------------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence                                2458999999998742                        24578999999999999998


Q ss_pred             ecCCCCcHHHHHHHHHhh-hhcc
Q 047371          182 SGILSEQLPRIINRYSEF-LEDI  203 (222)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~-~~~~  203 (222)
                      ......+..++.+.+.+. |...
T Consensus       139 ~~~~~~~~~~~~~~l~~~gf~~~  161 (179)
T TIGR00537       139 IQSSLNGEPDTFDKLDERGFRYE  161 (179)
T ss_pred             EEeccCChHHHHHHHHhCCCeEE
Confidence            766666677777777664 4333

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.64  E-value=2.2e-14  Score=125.83  Aligned_cols=164  Identities=16%  Similarity=0.147  Sum_probs=116.7

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ..+.++|+.-.   ..+.+..+.+.+...++++.+|||+|||+|.+++.++.. +..+++|+|+|+.+++.|++|+..++
T Consensus       223 ~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g  299 (423)
T PRK14966        223 RRFAVNPNVLI---PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG  299 (423)
T ss_pred             cEEEeCCCccC---CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            56788888554   345555555555444556779999999999999988864 66799999999999999999998766


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------------------
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------  161 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------  161 (222)
                      .   ++.+...|......                     ...++||+|++|||+..                        
T Consensus       300 ~---rV~fi~gDl~e~~l---------------------~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~d  355 (423)
T PRK14966        300 A---RVEFAHGSWFDTDM---------------------PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSD  355 (423)
T ss_pred             C---cEEEEEcchhcccc---------------------ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCc
Confidence            3   67777776532210                     02347999999999721                        


Q ss_pred             ----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceec--ccCCceEeeccc
Q 047371          162 ----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVS--EKDDWRCVSGTK  218 (222)
Q Consensus       162 ----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~w~~~~~~k  218 (222)
                          +..+++.+.+.|+|||.+++. ....+..++.+.+... +..++..  -.|.-+.+.+++
T Consensus       356 GL~~yr~Ii~~a~~~LkpgG~lilE-iG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~  418 (423)
T PRK14966        356 GLSCIRTLAQGAPDRLAEGGFLLLE-HGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY  418 (423)
T ss_pred             hHHHHHHHHHHHHHhcCCCcEEEEE-ECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence                345778888999999998864 5667888888888764 5444332  234455555543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.63  E-value=2.1e-15  Score=122.12  Aligned_cols=107  Identities=23%  Similarity=0.338  Sum_probs=88.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +|.+|||+|||.|.++..+|+.| .+|+|+|.++.+++.|+..+...++.   +++.....+.+..              
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~---i~y~~~~~edl~~--------------  120 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN---IDYRQATVEDLAS--------------  120 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccc---ccchhhhHHHHHh--------------
Confidence            79999999999999999999998 79999999999999999999888763   4454444433311              


Q ss_pred             cccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCCCCcHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGILSEQLP  190 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~  190 (222)
                              ..++||+|+|..+++|+   ..++..+.+++||||.++++++......
T Consensus       121 --------~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka  168 (243)
T COG2227         121 --------AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKA  168 (243)
T ss_pred             --------cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence                    33799999999998884   4589999999999999999887644433

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.63  E-value=5.9e-15  Score=113.57  Aligned_cols=106  Identities=28%  Similarity=0.418  Sum_probs=87.7

Q ss_pred             cCCCcEEEEccCCCHHHHHHHH-h-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIK-F-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++.+|||+|||+|.++..+++ . +..+++|+|+++.+++.|++++...++.  ++++...|...+..           
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~-----------   68 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQ-----------   68 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTTCGCG-----------
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehhcccc-----------
Confidence            4678999999999999999994 3 4689999999999999999999888876  89999998876521           


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              .+ + +.||+|+++.++++   ...+++.+.+.|+++|.+++....
T Consensus        69 --------~~-~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   69 --------EL-E-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             --------CS-S-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --------cc-C-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence                    00 2 78999999988766   345799999999999999987554

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.63  E-value=4.1e-15  Score=124.96  Aligned_cols=133  Identities=20%  Similarity=0.316  Sum_probs=89.9

Q ss_pred             eeEEeCCCcccccCCcc--------hhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH
Q 047371           27 TNIILNPGLAFGTGEHA--------TTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS   96 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~--------~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~   96 (222)
                      +.+.++|.+.|+++..+        ......+.+...  +++|++|||+|||.|.+++.+++....+|+|+.+|+.+.+.
T Consensus        21 y~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~  100 (273)
T PF02353_consen   21 YRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEY  100 (273)
T ss_dssp             HTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHH
T ss_pred             HHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHH
Confidence            34556667666655544        222223333333  78999999999999999999998734799999999999999


Q ss_pred             HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHH
Q 047371           97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVS  171 (222)
Q Consensus        97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~  171 (222)
                      +++.+...++. +++++...|...+                         ..+||.|++..++++     +..+++.+.+
T Consensus       101 a~~~~~~~gl~-~~v~v~~~D~~~~-------------------------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~  154 (273)
T PF02353_consen  101 ARERIREAGLE-DRVEVRLQDYRDL-------------------------PGKFDRIVSIEMFEHVGRKNYPAFFRKISR  154 (273)
T ss_dssp             HHHHHHCSTSS-STEEEEES-GGG----------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHH
T ss_pred             HHHHHHhcCCC-CceEEEEeecccc-------------------------CCCCCEEEEEechhhcChhHHHHHHHHHHH
Confidence            99999999987 5888888876544                         238999999888876     4678999999


Q ss_pred             cccCCeEEEEecCC
Q 047371          172 YAKPGAVVGISGIL  185 (222)
Q Consensus       172 ~LkpgG~l~~~~~~  185 (222)
                      .|||||.+++..+.
T Consensus       155 ~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  155 LLKPGGRLVLQTIT  168 (273)
T ss_dssp             HSETTEEEEEEEEE
T ss_pred             hcCCCcEEEEEecc
Confidence            99999999985443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.62  E-value=3.2e-14  Score=116.38  Aligned_cols=129  Identities=29%  Similarity=0.349  Sum_probs=95.3

Q ss_pred             hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      .+.++...+... ++++.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++..+++   ++.+...|.... 
T Consensus        21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~-   96 (223)
T PRK14967         21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARA-   96 (223)
T ss_pred             cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhh-
Confidence            344555555543 567889999999999999998887656999999999999999999887664   455665554321 


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc------------------------HHHHHHHHHHcccCCeE
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------LPQLADHIVSYAKPGAV  178 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~LkpgG~  178 (222)
                                            .+.++||+|++|+|+..                        +..+++++.++|||||.
T Consensus        97 ----------------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~  154 (223)
T PRK14967         97 ----------------------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS  154 (223)
T ss_pred             ----------------------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence                                  14568999999988653                        24467889999999999


Q ss_pred             EEEecCCCCcHHHHHHHHHh
Q 047371          179 VGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~~  198 (222)
                      +++......+..++.+.++.
T Consensus       155 l~~~~~~~~~~~~~~~~l~~  174 (223)
T PRK14967        155 LLLVQSELSGVERTLTRLSE  174 (223)
T ss_pred             EEEEEecccCHHHHHHHHHH
Confidence            99853333345566666654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.62  E-value=1.9e-14  Score=114.62  Aligned_cols=115  Identities=23%  Similarity=0.239  Sum_probs=91.8

Q ss_pred             hhcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           55 LIKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        55 ~~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++++.+|||+|||+|..+..+++ .+..+|+++|.++.+++.|++++..+++.  ++.+...+...+.           
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~--~i~~~~~d~~~~~-----------  108 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK--NVTVVHGRAEEFG-----------  108 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC--CEEEEeccHhhCC-----------
Confidence            356689999999999999998886 45689999999999999999999988875  5888888765441           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                                  ..++||+|+++. +..+..+++.+.++|||||++++.. .......+.+..
T Consensus       109 ------------~~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~  157 (187)
T PRK00107        109 ------------QEEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELP  157 (187)
T ss_pred             ------------CCCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHH
Confidence                        345899999986 4557889999999999999999863 334444444333

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.61  E-value=2.9e-14  Score=125.64  Aligned_cols=157  Identities=14%  Similarity=0.102  Sum_probs=118.2

Q ss_pred             CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ++...+.++......+|.+...+....++..+ .++++|||+|||+|.+++.++..+..+++++|+|+.+++.|++|+..
T Consensus       187 E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~-~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~  265 (396)
T PRK15128        187 EHGMKLLVDIQGGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL  265 (396)
T ss_pred             ECCEEEEEecccccccCcChhhHHHHHHHHHh-cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            44677788888777888887777766666655 35899999999999999987766667999999999999999999999


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHH
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVS  171 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~  171 (222)
                      +++..+++++...|...+..       .+           ....++||+|++|||+..            +.+++..+.+
T Consensus       266 Ngl~~~~v~~i~~D~~~~l~-------~~-----------~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~  327 (396)
T PRK15128        266 NKLDLSKAEFVRDDVFKLLR-------TY-----------RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQ  327 (396)
T ss_pred             cCCCCCcEEEEEccHHHHHH-------HH-----------HhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            98853478888887644310       00           002457999999999732            4556778899


Q ss_pred             cccCCeEEEE-ecCCCCcHHHHHHHHHhh
Q 047371          172 YAKPGAVVGI-SGILSEQLPRIINRYSEF  199 (222)
Q Consensus       172 ~LkpgG~l~~-~~~~~~~~~~~~~~~~~~  199 (222)
                      +|+|||.+++ +|...-+.+++.+.+.+.
T Consensus       328 lLk~gG~lv~~scs~~~~~~~f~~~v~~a  356 (396)
T PRK15128        328 LLNPGGILLTFSCSGLMTSDLFQKIIADA  356 (396)
T ss_pred             HcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence            9999999886 555555666666666544

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.61  E-value=1.7e-14  Score=129.20  Aligned_cols=158  Identities=14%  Similarity=0.081  Sum_probs=118.8

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ...+.++|+..|..+...+..++..++... ..++.+|||+|||+|.+++.+++.. .+++|+|+|+.+++.|++++..+
T Consensus       264 g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~  342 (443)
T PRK13168        264 GLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRN  342 (443)
T ss_pred             CeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence            456788887766554444444444444333 3567899999999999999998875 68999999999999999999888


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ++.  ++.+...|.......     ...             ..++||+|++|||.....+.++.+.+ ++|++.+|++|.
T Consensus       343 ~~~--~v~~~~~d~~~~l~~-----~~~-------------~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCn  401 (443)
T PRK13168        343 GLD--NVTFYHANLEEDFTD-----QPW-------------ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCN  401 (443)
T ss_pred             CCC--ceEEEEeChHHhhhh-----hhh-------------hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeC
Confidence            875  788888877432100     000             24579999999999887788877766 699999999999


Q ss_pred             CCCcHHHHHHHHHhhhhccee
Q 047371          185 LSEQLPRIINRYSEFLEDILV  205 (222)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~  205 (222)
                      +....+++......+|....+
T Consensus       402 p~tlaRDl~~L~~~gY~l~~i  422 (443)
T PRK13168        402 PATLARDAGVLVEAGYRLKRA  422 (443)
T ss_pred             hHHhhccHHHHhhCCcEEEEE
Confidence            999999998776665544443

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.61  E-value=5.2e-15  Score=103.78  Aligned_cols=92  Identities=26%  Similarity=0.399  Sum_probs=75.0

Q ss_pred             EEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccccc
Q 047371           63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIR  142 (222)
Q Consensus        63 LD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (222)
                      ||+|||+|..+..+++.+..+++++|+++.+++.++++....     ++.+...+...+++                   
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~-------------------   56 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPF-------------------   56 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-------------------
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCcc-------------------
Confidence            799999999999999886789999999999999999987543     34477777766654                   


Q ss_pred             CCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEE
Q 047371          143 GISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       143 ~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~  181 (222)
                         ++++||+|+++..+++.   ..+++++.|.|||||++++
T Consensus        57 ---~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   57 ---PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             ----TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---ccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence               78899999999888764   5689999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.61  E-value=4.3e-14  Score=115.87  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+|||+|||+|..+..+++.  +..+++|+|+++.+++.|+++....++.  ++.+...+......          
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~----------  110 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH--NVELVHGNAMELPF----------  110 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEEechhcCCC----------
Confidence            457899999999999999988875  3469999999999999999998766653  78888777654422          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN  194 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (222)
                                  +.++||+|+++..+++   ...+++++.++|+|||.+++.+....+...+..
T Consensus       111 ------------~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~  162 (231)
T TIGR02752       111 ------------DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQ  162 (231)
T ss_pred             ------------CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHH
Confidence                        5678999999877655   467899999999999999986554444333333

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02244 tocopherol O-methyltransferase

Probab=99.61  E-value=1.9e-14  Score=124.78  Aligned_cols=105  Identities=18%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+++....++. .++.+...|....++             
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~-------------  182 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADALNQPF-------------  182 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCC-------------
Confidence            467899999999999999998864579999999999999999988877765 478888888765533             


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecC
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ++++||+|++...++++   ..+++++.++|||||.+++.++
T Consensus       183 ---------~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        183 ---------EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             ---------CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                     57889999998877664   5689999999999999998643

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.60  E-value=1.3e-13  Score=116.82  Aligned_cols=166  Identities=22%  Similarity=0.214  Sum_probs=114.5

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhhh-cC-CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHH
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI-KG-GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~-~~-~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      ...|.++|+.-.  ...++..++...+.... .+ +.+|||+|||+|.+++.++.. +..+++|+|+++.+++.|++|+.
T Consensus        82 g~~f~v~~~vli--Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~  159 (284)
T TIGR00536        82 GLEFFVNEHVLI--PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAE  159 (284)
T ss_pred             CeEEEECCCCcC--CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            356788887443  23345555555554432 22 368999999999999998875 45799999999999999999998


Q ss_pred             hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---------------------
Q 047371          103 LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------  161 (222)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------  161 (222)
                      .+++. .++.+...|.....                       +.++||+|++|||+..                     
T Consensus       160 ~~~~~-~~v~~~~~d~~~~~-----------------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~g  215 (284)
T TIGR00536       160 KNQLE-HRVEFIQSNLFEPL-----------------------AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVG  215 (284)
T ss_pred             HcCCC-CcEEEEECchhccC-----------------------cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcC
Confidence            88875 35888877653210                       2347999999988632                     


Q ss_pred             -------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh--hhhcceec--ccCCceEeeccc
Q 047371          162 -------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE--FLEDILVS--EKDDWRCVSGTK  218 (222)
Q Consensus       162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~w~~~~~~k  218 (222)
                             +..+++.+.++|+|||++++. +...+...+.+.+..  .|..++..  -.|.-+++.+++
T Consensus       216 g~dgl~~~~~ii~~a~~~L~~gG~l~~e-~g~~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~  282 (284)
T TIGR00536       216 GDDGLNILRQIIELAPDYLKPNGFLVCE-IGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY  282 (284)
T ss_pred             CCcHHHHHHHHHHHHHHhccCCCEEEEE-ECccHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence                   345789999999999998875 566777778777763  24333332  224445554443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00740 methyltransferase, putative

Probab=99.60  E-value=4.1e-14  Score=116.82  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=88.0

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (222)
                      +..+.....+++.+|||+|||+|..+..+++.   +..+++|+|+++.+++.|++++...+.. .++++...+...+   
T Consensus        43 ~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~---  118 (239)
T TIGR00740        43 IGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHV---  118 (239)
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhC---
Confidence            33333334567889999999999999988864   4578999999999999999988765543 3678888777554   


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCC
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                           +...+|+|+++..+++.     ..+++++.+.|||||.+++++..
T Consensus       119 ---------------------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       119 ---------------------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             ---------------------CCCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence                                 33458999998877663     45899999999999999997653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.59  E-value=8.6e-15  Score=107.34  Aligned_cols=103  Identities=28%  Similarity=0.504  Sum_probs=83.8

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      |.+|||+|||+|.++..+++.+..+++|+|+++..++.|+.++...++. .++++...|.....       ..       
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~-------~~-------   65 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDLP-------EP-------   65 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHH-------HT-------
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhch-------hh-------
Confidence            5689999999999999988876689999999999999999999988875 47888888765442       01       


Q ss_pred             ccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEe
Q 047371          139 HEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                            ...++||+|++|+|+..           +..+++++.++|||||.+++.
T Consensus        66 ------~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   66 ------LPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             ------CTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------ccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                  15788999999999864           356799999999999999874

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.59  E-value=4.1e-14  Score=118.41  Aligned_cols=109  Identities=20%  Similarity=0.223  Sum_probs=86.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      ++++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++...  ... ..++.+...+...++.        
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~-~~~i~~~~~d~~~lp~--------  141 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC-YKNIEWIEGDATDLPF--------  141 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc-CCCeEEEEcccccCCC--------
Confidence            457889999999999999988864 3 46999999999999999876532  111 1378888888766543        


Q ss_pred             chhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCC
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSE  187 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (222)
                                    ++++||+|+++..+++   ...+++++.++|||||.+++.++...
T Consensus       142 --------------~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~  186 (261)
T PLN02233        142 --------------DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS  186 (261)
T ss_pred             --------------CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence                          6778999999887765   45689999999999999999766543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.59  E-value=2.3e-14  Score=115.58  Aligned_cols=122  Identities=13%  Similarity=0.139  Sum_probs=95.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|..+..+++. +..+++|+|+++.+++.|++++...++.  ++.+...+. +.+..       .+ 
T Consensus        38 ~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~l~~-------~~-  107 (202)
T PRK00121         38 GNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT--NLRLLCGDAVEVLLD-------MF-  107 (202)
T ss_pred             CCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC--CEEEEecCHHHHHHH-------Hc-
Confidence            346789999999999999988865 5578999999999999999998877764  788888876 43320       01 


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                  +.++||+|+++.+..+           ...+++++.++|||||.+++.+.......++.+.++..
T Consensus       108 ------------~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~  172 (202)
T PRK00121        108 ------------PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAE  172 (202)
T ss_pred             ------------CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhC
Confidence                        4678999999754321           45789999999999999999876666677777777664

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.59  E-value=1.5e-13  Score=114.33  Aligned_cols=159  Identities=20%  Similarity=0.220  Sum_probs=106.9

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ..+.++|+..+  ...++..++..++....  .++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++|+..
T Consensus        55 ~~~~v~~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~  132 (251)
T TIGR03704        55 LRIAVDPGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD  132 (251)
T ss_pred             eEEEECCCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            56788887544  23344444444433221  12458999999999999998864 456899999999999999999876


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------  161 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------  161 (222)
                      ++.     ++...|......       .           .  ..++||+|++|||+..                      
T Consensus       133 ~~~-----~~~~~D~~~~l~-------~-----------~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~g  187 (251)
T TIGR03704       133 AGG-----TVHEGDLYDALP-------T-----------A--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDG  187 (251)
T ss_pred             cCC-----EEEEeechhhcc-------h-----------h--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcC
Confidence            652     355555432100       0           0  1357999999999742                      


Q ss_pred             -------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceE
Q 047371          162 -------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRC  213 (222)
Q Consensus       162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~  213 (222)
                             +.++++.+.++|||||.+++. ....+..++...+.+. +...-..+.+-|..
T Consensus       188 g~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~~l~~~g~~~~~~~~~~~~~~  246 (251)
T TIGR03704       188 GADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVEAFARAGLIARVASSEELYAT  246 (251)
T ss_pred             CCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHHHHHHCCCCceeeEcccccce
Confidence                   236788889999999999986 4566778888888764 43333333333433

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.58  E-value=2.1e-13  Score=112.85  Aligned_cols=134  Identities=24%  Similarity=0.281  Sum_probs=98.5

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      ..++..++......+.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++...++.  ++.+...+..... 
T Consensus        74 ~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~-  150 (251)
T TIGR03534        74 EELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--NVTFLQSDWFEPL-  150 (251)
T ss_pred             HHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhccC-
Confidence            33333333333334568999999999999998875 5579999999999999999999887774  6778777653310 


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------------HHHHHHHHHHccc
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------------LPQLADHIVSYAK  174 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------------~~~~l~~~~~~Lk  174 (222)
                                            +.++||+|++|+|+..                             +..+++.+.+.|+
T Consensus       151 ----------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~  208 (251)
T TIGR03534       151 ----------------------PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK  208 (251)
T ss_pred             ----------------------cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc
Confidence                                  4678999999998753                             1246789999999


Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          175 PGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       175 pgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                      |||.+++. ....+..++.+.+.+. |..++
T Consensus       209 ~gG~~~~~-~~~~~~~~~~~~l~~~gf~~v~  238 (251)
T TIGR03534       209 PGGWLLLE-IGYDQGEAVRALFEAAGFADVE  238 (251)
T ss_pred             cCCEEEEE-ECccHHHHHHHHHHhCCCCceE
Confidence            99999986 3445566677777653 44433

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.57  E-value=5.5e-14  Score=114.34  Aligned_cols=125  Identities=12%  Similarity=0.211  Sum_probs=104.0

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CC------CEEEEEeCChHHHHHHHHHHHhcCCCCC-ceeEEecCCccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GA------AMFVGVDIDPQVIKSAHQNAALNNIGPK-KIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~  129 (222)
                      +++++||++||+|.++..+.+. +.      .+|+.+|+||.|++.++++....++..+ ++.+...|++.+++      
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF------  173 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF------  173 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC------
Confidence            4689999999999999987764 33      7899999999999999999977777643 38888889988876      


Q ss_pred             ccchhccccccccCCCCCCCeeEEEeccccc---cHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          130 DGVVEYLSSHEIRGISETEEYDVVIANILLN---PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                                      ++.+||...+...+.   +..+.+++++|.|||||++.+.++...+.+-+...+..+ |+.++
T Consensus       174 ----------------dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~Vlp  236 (296)
T KOG1540|consen  174 ----------------DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLP  236 (296)
T ss_pred             ----------------CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhc
Confidence                            889999999876654   477899999999999999999888777777888888777 55544

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.57  E-value=1.1e-13  Score=102.00  Aligned_cols=104  Identities=18%  Similarity=0.273  Sum_probs=84.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ..++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++...++.  ++.+...+......           
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~-----------   83 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS--NIVIVEGDAPEALE-----------   83 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC--ceEEEeccccccCh-----------
Confidence            346789999999999999998875 5579999999999999999998877664  66776665432100           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                ...++||+|++......+..+++.+.+.|||||.+++.
T Consensus        84 ----------~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        84 ----------DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             ----------hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence                      02357999999877777788999999999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.57  E-value=4.8e-14  Score=113.24  Aligned_cols=98  Identities=23%  Similarity=0.308  Sum_probs=80.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++....++.  ++++...|...+.               
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~~---------------   91 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLD--NLHTAVVDLNNLT---------------   91 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCC--cceEEecChhhCC---------------
Confidence            57899999999999999999875 58999999999999999988877764  5777666654332               


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~  181 (222)
                              ..++||+|+++..+++     ...+++.+.++|||||++++
T Consensus        92 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         92 --------FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             --------cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                    2456999999887764     34689999999999999654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.56  E-value=3.7e-14  Score=113.74  Aligned_cols=97  Identities=21%  Similarity=0.261  Sum_probs=76.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++.+++++...++.   +.....+.....               
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~---v~~~~~d~~~~~---------------   90 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP---LRTDAYDINAAA---------------   90 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC---ceeEeccchhcc---------------
Confidence            46799999999999999999876 58999999999999999888766652   445444443221               


Q ss_pred             cccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~  181 (222)
                              ..++||+|+++.++++.     ..+++.+.++|||||++++
T Consensus        91 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        91 --------LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             --------ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                    23579999998877653     4689999999999999555

Part of a tellurite-reducing operon tehA and tehB

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.56  E-value=1.2e-13  Score=114.66  Aligned_cols=110  Identities=19%  Similarity=0.300  Sum_probs=87.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..++..+ .+++++|+|+.+++.|+++..       ...+...|.+.++.              
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~--------------   99 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPL--------------   99 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcC--------------
Confidence            46789999999999999888765 689999999999999987642       12355666554422              


Q ss_pred             cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS  197 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (222)
                              ++++||+|+++.++++   ...++.++.++|||||.++++.+......++.+.+.
T Consensus       100 --------~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~  154 (251)
T PRK10258        100 --------ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ  154 (251)
T ss_pred             --------CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence                    5678999999988765   456899999999999999998887777766666543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2.9e-13  Score=114.27  Aligned_cols=143  Identities=24%  Similarity=0.312  Sum_probs=100.6

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhhcCCC-cEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE-LFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~-~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ..+.++++--.  ....+..++..++ ....... +|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|+..+
T Consensus        81 l~~~v~~~vli--Pr~dTe~Lve~~l-~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~  157 (280)
T COG2890          81 LRFKVDEGVLI--PRPDTELLVEAAL-ALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN  157 (280)
T ss_pred             eeeeeCCCcee--cCCchHHHHHHHH-HhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc
Confidence            45566666443  1223444444433 2222233 7999999999999999876 4569999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------  161 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------  161 (222)
                      ++.  ++.+...  +.+..                      -.++||+|++||||-.                       
T Consensus       158 ~l~--~~~~~~~--dlf~~----------------------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~  211 (280)
T COG2890         158 GLV--RVLVVQS--DLFEP----------------------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGG  211 (280)
T ss_pred             CCc--cEEEEee--ecccc----------------------cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCc
Confidence            873  5444443  22311                      2348999999999622                       


Q ss_pred             -----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          162 -----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       162 -----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                           +..++.++.+.|+|||.+++. ....+...+.+.+...
T Consensus       212 dGl~~~~~i~~~a~~~l~~~g~l~le-~g~~q~~~v~~~~~~~  253 (280)
T COG2890         212 DGLEVYRRILGEAPDILKPGGVLILE-IGLTQGEAVKALFEDT  253 (280)
T ss_pred             cHHHHHHHHHHhhHHHcCCCcEEEEE-ECCCcHHHHHHHHHhc
Confidence                 345789999999999988885 4566777777777665

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.55  E-value=3.2e-13  Score=105.84  Aligned_cols=119  Identities=14%  Similarity=0.207  Sum_probs=103.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ..++++++|+|||+|++++.++.. +..+++++|-++++++..++|+.+.+++  |+.+..+++...-.           
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~--n~~vv~g~Ap~~L~-----------   98 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD--NLEVVEGDAPEALP-----------   98 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC--cEEEEeccchHhhc-----------
Confidence            568999999999999999998854 5689999999999999999999999965  99999988754421           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                 +..++|.|++... ..+..+++.+...|||||.++.....-+......+.+++.
T Consensus        99 -----------~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~  151 (187)
T COG2242          99 -----------DLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL  151 (187)
T ss_pred             -----------CCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence                       2337999999888 6789999999999999999999988888888888888876

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.55  E-value=3.9e-14  Score=121.57  Aligned_cols=103  Identities=21%  Similarity=0.379  Sum_probs=84.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|.++.+++.|+.+....+.. .++.+...+.+.+..              
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~--------------  194 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLAD--------------  194 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhh--------------
Confidence            46689999999999999998765 68999999999999999886654442 367788877655422              


Q ss_pred             cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              ..++||+|++..++++   ...+++++.++|||||.++++++
T Consensus       195 --------~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        195 --------EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             --------ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence                    4578999999888876   45689999999999999998754

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.54  E-value=8e-14  Score=116.22  Aligned_cols=109  Identities=18%  Similarity=0.295  Sum_probs=87.0

Q ss_pred             HHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        51 ~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      ++..+..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++....++. .++.+...+...+..       
T Consensus        37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~-------  107 (255)
T PRK11036         37 LLAELPPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQ-------  107 (255)
T ss_pred             HHHhcCCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhh-------
Confidence            333333456899999999999999999875 68999999999999999998877764 467787776644310       


Q ss_pred             cchhccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEe
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~  182 (222)
                       .             ..++||+|+++.+++++   ..+++.+.++|||||++++.
T Consensus       108 -~-------------~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        108 -H-------------LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             -h-------------cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence             0             45789999999887653   56899999999999999874

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.54  E-value=1.1e-13  Score=115.96  Aligned_cols=111  Identities=17%  Similarity=0.163  Sum_probs=85.3

Q ss_pred             HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ..++... ++++.+|||+|||+|..+..+++....+|+|+|+++.+++.|+++...    ..++.+...|......    
T Consensus        42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~----  113 (263)
T PTZ00098         42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDF----  113 (263)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCC----
Confidence            3344333 567899999999999999888765446999999999999999987643    1367787777654322    


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                        ++++||+|++...+.+     ...+++++.++|||||.+++.+..
T Consensus       114 ------------------~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        114 ------------------PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             ------------------CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence                              5678999999665433     346899999999999999997653

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.54  E-value=1.5e-14  Score=118.21  Aligned_cols=101  Identities=20%  Similarity=0.372  Sum_probs=81.3

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCc----eeEEecCCcccccccccccccchh
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK----IKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      |++|||+|||+|.++..|++.+ ++|+|+|.++.+++.|++..........+    +.+...+.+..             
T Consensus        90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------------  155 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------------  155 (282)
T ss_pred             CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------------
Confidence            4789999999999999999997 79999999999999999986555544332    33444443332             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                  .++||.|+|..+++|+   .++++.+.+.|||+|.++++++.
T Consensus       156 ------------~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  156 ------------TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             ------------ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence                        3459999999999885   45899999999999999997653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.53  E-value=4.3e-13  Score=121.78  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=91.5

Q ss_pred             CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +.+|||+|||+|.+++.++.. +..+++|+|+|+.+++.|++++..+++. .++.+...|....          +     
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~----------~-----  202 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN----------I-----  202 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh----------C-----
Confidence            468999999999999988764 6679999999999999999999888775 4677777664221          0     


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----------------------------HHHHHHHHHHcccCCeEEEEecCCCCc
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----------------------------LPQLADHIVSYAKPGAVVGISGILSEQ  188 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (222)
                              +.++||+|++|||+..                             +..+++.+.++|+|||.+++. +...+
T Consensus       203 --------~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~q  273 (506)
T PRK01544        203 --------EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGFKQ  273 (506)
T ss_pred             --------cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECCch
Confidence                    3457999999998532                             334678899999999999885 66777


Q ss_pred             HHHHHHHHHhh
Q 047371          189 LPRIINRYSEF  199 (222)
Q Consensus       189 ~~~~~~~~~~~  199 (222)
                      ...+.+.+...
T Consensus       274 ~~~v~~~~~~~  284 (506)
T PRK01544        274 EEAVTQIFLDH  284 (506)
T ss_pred             HHHHHHHHHhc
Confidence            78888877664

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.53  E-value=3.3e-13  Score=115.92  Aligned_cols=144  Identities=16%  Similarity=0.191  Sum_probs=107.6

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ..+.++|...|.++...... +.+.+...+  .++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|++++..+
T Consensus       141 ~~~~~~~~sF~Q~n~~~~~~-l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~  218 (315)
T PRK03522        141 VPLFIRPQSFFQTNPAVAAQ-LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAEL  218 (315)
T ss_pred             EEEEECCCeeeecCHHHHHH-HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence            46777877766554443433 333333332  257899999999999999999875 79999999999999999999988


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ++.  ++++...|...+..                     ...+.||+|++|||...+...+..+...++|++.+|++|.
T Consensus       219 ~l~--~v~~~~~D~~~~~~---------------------~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~  275 (315)
T PRK03522        219 GLT--NVQFQALDSTQFAT---------------------AQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCN  275 (315)
T ss_pred             CCC--ceEEEEcCHHHHHH---------------------hcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECC
Confidence            874  78898888754321                     0234699999999987654444444455789999999999


Q ss_pred             CCCcHHHHHHH
Q 047371          185 LSEQLPRIINR  195 (222)
Q Consensus       185 ~~~~~~~~~~~  195 (222)
                      +....+++...
T Consensus       276 p~t~~rd~~~l  286 (315)
T PRK03522        276 AQTMAKDLAHL  286 (315)
T ss_pred             cccchhHHhhc
Confidence            98888888665

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.52  E-value=4.3e-13  Score=108.38  Aligned_cols=101  Identities=19%  Similarity=0.186  Sum_probs=80.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|..+..+++.  ...+|+++|+++.+++.|++++..+++. .++.+...|.....           
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~-----------  137 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGL-----------  137 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCC-----------
Confidence            457889999999999999988875  2468999999999999999999887764 35778877764321           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                 ....+||+|+++....++   .+.+.+.|+|||.+++.
T Consensus       138 -----------~~~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        138 -----------EKHAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIP  172 (205)
T ss_pred             -----------ccCCCccEEEEccCcchh---hHHHHHhcCcCcEEEEE
Confidence                       135689999998876544   46788999999999884

>PRK14968 putative methyltransferase; Provisional

Probab=99.52  E-value=8.5e-13  Score=104.43  Aligned_cols=119  Identities=29%  Similarity=0.409  Sum_probs=90.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++..++....++.+...|....          .    
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----------~----   86 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----------F----   86 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----------c----
Confidence            57889999999999999998887 47999999999999999999887776522266665554221          0    


Q ss_pred             ccccccCCCCCCCeeEEEecccccc------------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP------------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                               ..++||+|++|+++..                        +..+++++.++|||||.+++.........++
T Consensus        87 ---------~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l  157 (188)
T PRK14968         87 ---------RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEV  157 (188)
T ss_pred             ---------cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHH
Confidence                     3347999999988643                        3457899999999999988754434445667


Q ss_pred             HHHHHhh
Q 047371          193 INRYSEF  199 (222)
Q Consensus       193 ~~~~~~~  199 (222)
                      .+.+.+.
T Consensus       158 ~~~~~~~  164 (188)
T PRK14968        158 LEYLEKL  164 (188)
T ss_pred             HHHHHHC
Confidence            7776654

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.52  E-value=3.4e-13  Score=109.72  Aligned_cols=100  Identities=15%  Similarity=0.227  Sum_probs=80.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|++++...++.  ++.+...|.....           
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~--~v~~~~~d~~~~~-----------  141 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD--NVIVIVGDGTQGW-----------  141 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CeEEEECCcccCC-----------
Confidence            5678999999999999999988763  357999999999999999999988874  7888887764321           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                 ....+||+|+++.+...   +.+.+.+.|+|||++++.
T Consensus       142 -----------~~~~~fD~Ii~~~~~~~---~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       142 -----------EPLAPYDRIYVTAAGPK---IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             -----------cccCCCCEEEEcCCccc---ccHHHHHhcCcCcEEEEE
Confidence                       13468999999876543   456678899999999885

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.52  E-value=3.5e-13  Score=126.85  Aligned_cols=139  Identities=17%  Similarity=0.191  Sum_probs=106.1

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ...+.++......+|.+...+....++..+. ++++|||+|||+|.+++.++..+..+|+++|+|+.+++.|++|+..++
T Consensus       507 g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng  585 (702)
T PRK11783        507 GAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG  585 (702)
T ss_pred             CEEEEEEcCCCCcceECHHHHHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            4555555554455666666666666666554 489999999999999999998877789999999999999999999998


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHH
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVS  171 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~  171 (222)
                      +...++++...|...+..                   .  ..++||+|++|||...              +.+++..+.+
T Consensus       586 ~~~~~v~~i~~D~~~~l~-------------------~--~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~  644 (702)
T PRK11783        586 LSGRQHRLIQADCLAWLK-------------------E--AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKR  644 (702)
T ss_pred             CCccceEEEEccHHHHHH-------------------H--cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence            853478888887643310                   0  1457999999998631              4567889999


Q ss_pred             cccCCeEEEEecCCC
Q 047371          172 YAKPGAVVGISGILS  186 (222)
Q Consensus       172 ~LkpgG~l~~~~~~~  186 (222)
                      +|+|||.+++++...
T Consensus       645 lL~~gG~l~~~~~~~  659 (702)
T PRK11783        645 LLRPGGTLYFSNNKR  659 (702)
T ss_pred             HcCCCCEEEEEeCCc
Confidence            999999998865433

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.52  E-value=6.2e-13  Score=106.83  Aligned_cols=122  Identities=20%  Similarity=0.251  Sum_probs=95.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++..+++. +++.+...+......          
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l~----------  106 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEILF----------  106 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhHh----------
Confidence            567899999999999999988764  3468999999999999999999887753 477777766543210          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                               .  ..++||.|+++.....+..+++.+.+.|||||.+++.....++..+..+.+++.
T Consensus       107 ---------~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  161 (198)
T PRK00377        107 ---------T--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENI  161 (198)
T ss_pred             ---------h--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHc
Confidence                     0  235799999977656678899999999999999998655566667777777553

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.51  E-value=2.5e-13  Score=114.12  Aligned_cols=105  Identities=27%  Similarity=0.442  Sum_probs=85.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+|||+|||+|..+..+++. + ..+|+|+|+++.+++.|+++....++.  ++.+...+...+..          
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~--~v~~~~~d~~~l~~----------  142 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--NVEFRLGEIEALPV----------  142 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC--CEEEEEcchhhCCC----------
Confidence            567899999999999888766654 3 358999999999999999998877764  77777777654422          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  ++++||+|+++..+++   ...+++++.++|||||.++++++
T Consensus       143 ------------~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        143 ------------ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             ------------CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                        4668999999987765   45689999999999999999644

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.51  E-value=5e-13  Score=113.33  Aligned_cols=127  Identities=23%  Similarity=0.300  Sum_probs=92.2

Q ss_pred             ceeEEeCCCcccccCCc--chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           26 ATNIILNPGLAFGTGEH--ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~--~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ...|-..|...|.....  .....+...+.. . ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.+++++..
T Consensus        88 ~l~fy~~~~~~f~~~~~~~~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335         88 QLSFYCKPEDYFHKKYNLTATHSEVLEAVQT-V-KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             EEEEEEcchhhHhhhhccccccHHHHHHhhc-c-CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHH
Confidence            34466667666644332  233334444432 3 35599999999999999999876 6899999999999999999887


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeE
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAV  178 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~  178 (222)
                      .++   ++.+...|.....                       ..++||+|+++..+++     ...+++++.++|+|||+
T Consensus       165 ~~l---~v~~~~~D~~~~~-----------------------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~  218 (287)
T PRK12335        165 ENL---NIRTGLYDINSAS-----------------------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGY  218 (287)
T ss_pred             cCC---ceEEEEechhccc-----------------------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence            765   4556555543321                       2567999999887764     45689999999999999


Q ss_pred             EEE
Q 047371          179 VGI  181 (222)
Q Consensus       179 l~~  181 (222)
                      +++
T Consensus       219 ~l~  221 (287)
T PRK12335        219 NLI  221 (287)
T ss_pred             EEE
Confidence            665

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.51  E-value=4.6e-13  Score=117.00  Aligned_cols=155  Identities=16%  Similarity=0.146  Sum_probs=124.0

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      +...+.++....-.+|.+...+.....+...++ |++|||++|=||.++++++..|+.++++||.|..+++.|++|+..|
T Consensus       185 ~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LN  263 (393)
T COG1092         185 NGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELN  263 (393)
T ss_pred             CCeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhc
Confidence            356777888877788899999999999988888 9999999999999999999999889999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc------------cHHHHHHHHHHc
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN------------PLPQLADHIVSY  172 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~------------~~~~~l~~~~~~  172 (222)
                      ++..+++.++..|+-.+..       ..           .....+||+|+++||-.            .+.+++..+.++
T Consensus       264 g~~~~~~~~i~~Dvf~~l~-------~~-----------~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i  325 (393)
T COG1092         264 GLDGDRHRFIVGDVFKWLR-------KA-----------ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL  325 (393)
T ss_pred             CCCccceeeehhhHHHHHH-------HH-----------HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH
Confidence            9987778888887643311       00           01345899999999843            266789999999


Q ss_pred             ccCCeEEEEe-cCCCCcHHHHHHHHHh
Q 047371          173 AKPGAVVGIS-GILSEQLPRIINRYSE  198 (222)
Q Consensus       173 LkpgG~l~~~-~~~~~~~~~~~~~~~~  198 (222)
                      |+|||.++++ |...-....+.+.+..
T Consensus       326 L~pgG~l~~~s~~~~~~~~~f~~~i~~  352 (393)
T COG1092         326 LAPGGTLVTSSCSRHFSSDLFLEIIAR  352 (393)
T ss_pred             cCCCCEEEEEecCCccCHHHHHHHHHH
Confidence            9999999885 4444455554444443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.51  E-value=2.4e-12  Score=108.12  Aligned_cols=149  Identities=21%  Similarity=0.297  Sum_probs=101.4

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ..+.++++...   ..+.+..+.+.+...  ..++.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++. 
T Consensus        78 ~~~~~~~~~li---pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-  153 (275)
T PRK09328         78 LDFKVSPGVLI---PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-  153 (275)
T ss_pred             cEEEECCCcee---CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-
Confidence            34555555321   223333344433322  346779999999999999998875 46799999999999999999987 


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------  161 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------  161 (222)
                      .... .++.+...|....          .             +.++||+|++|+|+..                      
T Consensus       154 ~~~~-~~i~~~~~d~~~~----------~-------------~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~  209 (275)
T PRK09328        154 HGLG-ARVEFLQGDWFEP----------L-------------PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFG  209 (275)
T ss_pred             hCCC-CcEEEEEccccCc----------C-------------CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcC
Confidence            2222 3677777765221          0             3468999999998642                      


Q ss_pred             -------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          162 -------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                             +..+++++.++|+|||++++. ....+...+.+.+... |..++
T Consensus       210 g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~g~~~~~~~~~~l~~~gf~~v~  259 (275)
T PRK09328        210 GEDGLDFYRRIIEQAPRYLKPGGWLLLE-IGYDQGEAVRALLAAAGFADVE  259 (275)
T ss_pred             CCCHHHHHHHHHHHHHHhcccCCEEEEE-ECchHHHHHHHHHHhCCCceeE
Confidence                   244678888999999999985 3455566677776653 44333

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.50  E-value=2.3e-13  Score=113.42  Aligned_cols=103  Identities=20%  Similarity=0.283  Sum_probs=80.4

Q ss_pred             HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      ..++..+ ..++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++.         ++.+...|...+.    
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~----   85 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK----   85 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC----
Confidence            3444433 356789999999999999988876 457899999999999999752         3456666654331    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEec
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                         +.++||+|+++.+++++   ..+++++.+.|||||.+++..
T Consensus        86 -------------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         86 -------------------PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             -------------------CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence                               45689999999988774   568999999999999999863

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.50  E-value=8.3e-13  Score=114.08  Aligned_cols=104  Identities=18%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++++|||+|||+|.+++.++..+ .+++|+|+++.+++.|+.|+...++.  ++.+...|...+..            
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~------------  244 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPL------------  244 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCc------------
Confidence            5678999999999999998877765 68999999999999999999888876  47777777655432            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ..++||+|++|||+..            +.++++.+.+.|||||.+++...
T Consensus       245 ----------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~  295 (329)
T TIGR01177       245 ----------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP  295 (329)
T ss_pred             ----------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence                      3578999999998742            46789999999999999888643

This family is found exclusively in the Archaea.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.49  E-value=4.9e-13  Score=107.15  Aligned_cols=121  Identities=17%  Similarity=0.187  Sum_probs=93.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +..++||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++.  ++.+..+++..+..             
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~--ni~~i~~d~~~~~~-------------   80 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK--NLHVLCGDANELLD-------------   80 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC--CEEEEccCHHHHHH-------------
Confidence            4568999999999999988864 6679999999999999999998887775  88888887754310             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                            ...+.+.+|.|+++.+-.+           ...+++.+.+.|||||.+++.+........+.+.+...
T Consensus        81 ------~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~  148 (194)
T TIGR00091        81 ------KFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN  148 (194)
T ss_pred             ------hhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence                  0114568999999875432           14689999999999999999765555566666666554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.48  E-value=7.7e-13  Score=111.43  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=113.4

Q ss_pred             CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ++...+.++....-.+|.+...+....++..+. .+++|||+.|=+|.+++.++..|+.+++.+|.|..+++.|++|+..
T Consensus        90 E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l  168 (286)
T PF10672_consen   90 ENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL  168 (286)
T ss_dssp             ETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH
T ss_pred             ECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            345677777777777888889998888887764 4899999999999999999888888999999999999999999999


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---------HHHHHHHHHHccc
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------LPQLADHIVSYAK  174 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------~~~~l~~~~~~Lk  174 (222)
                      |++..+++++...|+-.+..                   .+...++||+|+++||-..         +.+++..+.++|+
T Consensus       169 Ng~~~~~~~~~~~Dvf~~l~-------------------~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~  229 (286)
T PF10672_consen  169 NGLDLDRHRFIQGDVFKFLK-------------------RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLK  229 (286)
T ss_dssp             TT-CCTCEEEEES-HHHHHH-------------------HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEE
T ss_pred             cCCCccceEEEecCHHHHHH-------------------HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99876788888877643211                   0113468999999998532         6678999999999


Q ss_pred             CCeEEEEe-cCCCCcHHHHHHHHHhh
Q 047371          175 PGAVVGIS-GILSEQLPRIINRYSEF  199 (222)
Q Consensus       175 pgG~l~~~-~~~~~~~~~~~~~~~~~  199 (222)
                      |||.++++ |...-....+.+.+...
T Consensus       230 ~gG~l~~~scs~~i~~~~l~~~~~~~  255 (286)
T PF10672_consen  230 PGGLLLTCSCSHHISPDFLLEAVAEA  255 (286)
T ss_dssp             EEEEEEEEE--TTS-HHHHHHHHHHH
T ss_pred             CCCEEEEEcCCcccCHHHHHHHHHHh
Confidence            99998764 44444445555555443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.48  E-value=5.6e-13  Score=114.72  Aligned_cols=102  Identities=18%  Similarity=0.203  Sum_probs=80.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..++..+...|+|+|.|+.++.+++......+.. .++.+...+.+.+.               
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp---------------  185 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLP---------------  185 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCC---------------
Confidence            57899999999999999998887778999999999987765543322222 36778777665542               


Q ss_pred             cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              ..++||+|++...++|   ...+++++++.|+|||.+++.+
T Consensus       186 --------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        186 --------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             --------CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence                    2567999999887766   4568999999999999999853

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.48  E-value=5.5e-13  Score=111.18  Aligned_cols=105  Identities=21%  Similarity=0.290  Sum_probs=82.1

Q ss_pred             HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      ..++... .+++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++.       .++.+...|...+.    
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~----   89 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ----   89 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC----
Confidence            3444433 356889999999999999988865 5679999999999999998763       14566666654331    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                         +.++||+|+++..+++   ...+++++.+.|||||.+++..
T Consensus        90 -------------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         90 -------------------PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             -------------------CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence                               4568999999998876   3568999999999999999863

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.48  E-value=9.5e-13  Score=117.72  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=102.4

Q ss_pred             ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      .|..|..........++...  .++|.+|||+|||+|..+..+++.  +.++|+++|+++.+++.+++++...++.  ++
T Consensus       228 ~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v  305 (434)
T PRK14901        228 GYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK--SI  305 (434)
T ss_pred             HHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC--eE
Confidence            34455554444444444433  457899999999999999988875  3468999999999999999999999885  68


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHH
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLA  166 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l  166 (222)
                      .+...|...+..     ..+.             ..++||.|++++|+..                         ..+++
T Consensus       306 ~~~~~D~~~~~~-----~~~~-------------~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL  367 (434)
T PRK14901        306 KILAADSRNLLE-----LKPQ-------------WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELL  367 (434)
T ss_pred             EEEeCChhhccc-----cccc-------------ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHH
Confidence            888877654310     0000             2467999999987632                         24579


Q ss_pred             HHHHHcccCCeEEEEecC---CCCcHHHHHHHHHhh
Q 047371          167 DHIVSYAKPGAVVGISGI---LSEQLPRIINRYSEF  199 (222)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~---~~~~~~~~~~~~~~~  199 (222)
                      .++.+.|||||++++++.   ..++...+...++++
T Consensus       368 ~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~  403 (434)
T PRK14901        368 ESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH  403 (434)
T ss_pred             HHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence            999999999999887643   234455555565554

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.47  E-value=4.9e-13  Score=117.60  Aligned_cols=129  Identities=21%  Similarity=0.301  Sum_probs=94.5

Q ss_pred             ceeEEeCCCcccccCCcchh-------HHHHH-HHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH
Q 047371           26 ATNIILNPGLAFGTGEHATT-------KLCLL-LLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS   96 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~-------~~~~~-~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~   96 (222)
                      .+.+.++|++.|++|.+...       ..... +++.. ++++.+|||+|||+|.++..+++....+|+|+|+|+.+++.
T Consensus       126 ~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~  205 (383)
T PRK11705        126 LFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKL  205 (383)
T ss_pred             HHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            45677888888877776421       11122 22222 46889999999999999999887645699999999999999


Q ss_pred             HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHH
Q 047371           97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVS  171 (222)
Q Consensus        97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~  171 (222)
                      |+++..  ++   .+++...+...                         ..++||.|++...+++.     ..+++.+.+
T Consensus       206 A~~~~~--~l---~v~~~~~D~~~-------------------------l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r  255 (383)
T PRK11705        206 AQERCA--GL---PVEIRLQDYRD-------------------------LNGQFDRIVSVGMFEHVGPKNYRTYFEVVRR  255 (383)
T ss_pred             HHHHhc--cC---eEEEEECchhh-------------------------cCCCCCEEEEeCchhhCChHHHHHHHHHHHH
Confidence            998863  22   35555554322                         14579999998877653     568999999


Q ss_pred             cccCCeEEEEecC
Q 047371          172 YAKPGAVVGISGI  184 (222)
Q Consensus       172 ~LkpgG~l~~~~~  184 (222)
                      +|||||.+++..+
T Consensus       256 ~LkpGG~lvl~~i  268 (383)
T PRK11705        256 CLKPDGLFLLHTI  268 (383)
T ss_pred             HcCCCcEEEEEEc
Confidence            9999999998644

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.47  E-value=1.6e-12  Score=104.46  Aligned_cols=122  Identities=20%  Similarity=0.151  Sum_probs=89.0

Q ss_pred             cchhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           42 HATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        42 ~~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      .+++..+.+.+...+   .++.+|||+|||+|.+++.++..+..+|+++|.++.+++.+++|+..+++.  ++.+...|.
T Consensus        34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~~~D~  111 (199)
T PRK10909         34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG--NARVVNTNA  111 (199)
T ss_pred             CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEEchH
Confidence            566666654443332   357899999999999999766555689999999999999999999988875  688877765


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHc--ccCCeEEEEecCCC
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSY--AKPGAVVGISGILS  186 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~--LkpgG~l~~~~~~~  186 (222)
                      .....                   .  ..++||+|++|||+..  ....++.+...  |+|++.+++.+...
T Consensus       112 ~~~l~-------------------~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        112 LSFLA-------------------Q--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             HHHHh-------------------h--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            43210                   0  2346999999999643  34455655553  79999999975443

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.47  E-value=3.2e-12  Score=102.46  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=94.5

Q ss_pred             cchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        42 ~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      ..+...+..++...  .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++.  ++++...+.
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~~~d~   99 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVIEGSA   99 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEEECch
Confidence            34555566554444  347889999999999999988864 4579999999999999999999887764  677777765


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                      ....       ..              ....+|.++.... .....+++.+.+.|+|||.+++.....++...+.+.+++
T Consensus       100 ~~~~-------~~--------------~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~  157 (196)
T PRK07402        100 PECL-------AQ--------------LAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQ  157 (196)
T ss_pred             HHHH-------hh--------------CCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHh
Confidence            3210       00              1123466665432 345788999999999999999976554454555555543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.47  E-value=2e-12  Score=105.08  Aligned_cols=100  Identities=18%  Similarity=0.268  Sum_probs=81.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++.  ++.+...|.....           
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~--~v~~~~gd~~~~~-----------  140 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD--NVEVIVGDGTLGY-----------  140 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCC-----------
Confidence            568999999999999999988875 2 369999999999999999999888764  7888888764321           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                 .+.++||+|+++.....   +.+.+.+.|||||.+++.
T Consensus       141 -----------~~~~~fD~I~~~~~~~~---~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        141 -----------EENAPYDRIYVTAAGPD---IPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             -----------CcCCCcCEEEECCCccc---chHHHHHhhCCCcEEEEE
Confidence                       14578999999775543   445778899999998884

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.47  E-value=1.4e-12  Score=114.56  Aligned_cols=144  Identities=15%  Similarity=0.197  Sum_probs=108.2

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ...+.++|+..|.+.. .....+...+...+  .++.+|||+|||+|.+++.++..+ .+++|+|+++.+++.|++|+..
T Consensus       200 g~~~~~~~~~F~Q~n~-~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~  277 (374)
T TIGR02085       200 DVPLVIRPQSFFQTNP-KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQM  277 (374)
T ss_pred             CEEEEECCCccccCCH-HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHH
Confidence            3467888877664433 33333444443432  356899999999999999998765 7899999999999999999998


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-HHHHHHHHcccCCeEEEEe
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP-QLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (222)
                      +++.  ++.+...|...+..                   .  ..++||+|++|||..... .+++.+. .++|++.+|++
T Consensus       278 ~~~~--~~~~~~~d~~~~~~-------------------~--~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       278 LGLD--NLSFAALDSAKFAT-------------------A--QMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             cCCC--cEEEEECCHHHHHH-------------------h--cCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            8875  78888887754311                   0  123599999999987643 4556554 47999999999


Q ss_pred             cCCCCcHHHHHHH
Q 047371          183 GILSEQLPRIINR  195 (222)
Q Consensus       183 ~~~~~~~~~~~~~  195 (222)
                      |.+....+++...
T Consensus       334 c~p~TlaRDl~~L  346 (374)
T TIGR02085       334 CNAQTMAKDIAEL  346 (374)
T ss_pred             eCHHHHHHHHHHh
Confidence            9888888888776

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.46  E-value=1.1e-12  Score=118.54  Aligned_cols=104  Identities=23%  Similarity=0.247  Sum_probs=83.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++...  .. .++.+...|......            
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~--~~-~~v~~~~~d~~~~~~------------  328 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG--RK-CSVEFEVADCTKKTY------------  328 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc--CC-CceEEEEcCcccCCC------------
Confidence            456889999999999999988876456899999999999999987642  22 367787777654322            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +.++||+|++...+++   ...+++++++.|||||.+++.+.
T Consensus       329 ----------~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        329 ----------PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             ----------CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                      5678999999877766   45689999999999999998754

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.46  E-value=1.5e-12  Score=116.38  Aligned_cols=155  Identities=18%  Similarity=0.147  Sum_probs=109.9

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ...+.++|...|.. +......+.+.+...  .+++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+..
T Consensus       259 ~~~~~~~~~~F~Q~-N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~  336 (431)
T TIGR00479       259 DLSFSLSARDFFQV-NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAEL  336 (431)
T ss_pred             CEEEEECCCceeec-CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHH
Confidence            34677777755543 333344344444443  3467899999999999999998774 6899999999999999999998


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEEe
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +++.  ++++...|......       .+           ....++||+|++++|... ...+++.+. .++|++.+|++
T Consensus       337 ~~~~--nv~~~~~d~~~~l~-------~~-----------~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       337 NGIA--NVEFLAGTLETVLP-------KQ-----------PWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             hCCC--ceEEEeCCHHHHHH-------HH-----------HhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence            8875  88888887644210       00           002456999999999765 456677655 48999999999


Q ss_pred             cCCCCcHHHHHHHHHhhhhcc
Q 047371          183 GILSEQLPRIINRYSEFLEDI  203 (222)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~  203 (222)
                      |.+....+++......++...
T Consensus       396 c~p~tlard~~~l~~~gy~~~  416 (431)
T TIGR00479       396 CNPATLARDLEFLCKEGYGIT  416 (431)
T ss_pred             CCHHHHHHHHHHHHHCCeeEE
Confidence            877766677766555544333

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.46  E-value=1.8e-12  Score=108.73  Aligned_cols=119  Identities=18%  Similarity=0.191  Sum_probs=90.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++|.+|||+|||+|..+..+++.  +.+.|+++|+++.+++.+++++..+++.  ++.+...|...+..          
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~----------  136 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL--NVAVTNFDGRVFGA----------  136 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEecCCHHHhhh----------
Confidence            467899999999999999988874  2468999999999999999999988875  67777776543311          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC-C-C
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI-L-S  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~-~-~  186 (222)
                                  ..+.||+|++++|+..                         ..++++.+.++|||||++++++. . .
T Consensus       137 ------------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       137 ------------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             ------------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence                        2346999999988653                         23488999999999999988633 2 3


Q ss_pred             CcHHHHHHHHHh
Q 047371          187 EQLPRIINRYSE  198 (222)
Q Consensus       187 ~~~~~~~~~~~~  198 (222)
                      .+.+++.+.+.+
T Consensus       205 ~Ene~vv~~~l~  216 (264)
T TIGR00446       205 EENEAVVDYLLE  216 (264)
T ss_pred             HHHHHHHHHHHH
Confidence            333445554433

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.46  E-value=5.7e-13  Score=95.49  Aligned_cols=91  Identities=25%  Similarity=0.484  Sum_probs=71.1

Q ss_pred             EEEEccCCCHHHHHHHHh---C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           62 FLDYGTGSGILGIAAIKF---G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        62 vLD~G~G~G~~~~~la~~---~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      |||+|||+|..+..+++.   + ..+++|+|+++.+++.++++....+.   ++++...|...+..              
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~--------------   63 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPF--------------   63 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHH--------------
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcc--------------
Confidence            799999999999998875   2 37999999999999999999877554   67888888866532              


Q ss_pred             cccccCCCCCCCeeEEEec-ccccc-----HHHHHHHHHHcccCCe
Q 047371          138 SHEIRGISETEEYDVVIAN-ILLNP-----LPQLADHIVSYAKPGA  177 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~-~~~~~-----~~~~l~~~~~~LkpgG  177 (222)
                              ..++||+|++. ..+++     ...+++++.++|+|||
T Consensus        64 --------~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   64 --------SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             --------HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             --------cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence                    46799999994 43655     3568999999999998

>TIGR00452 methyltransferase, putative

Probab=99.46  E-value=7.4e-13  Score=113.26  Aligned_cols=103  Identities=18%  Similarity=0.144  Sum_probs=77.7

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++++|||+|||+|.++..++..+...|+|+|.|+.++.+++......... .++.+...+...+.              
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~~~~ie~lp--------------  184 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILEPLGIEQLH--------------  184 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEEECCHHHCC--------------
Confidence            457899999999999998888777678999999999998765432221211 25556655554432              


Q ss_pred             ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                               ...+||+|+++.+++|   ....++++++.|||||.+++.+
T Consensus       185 ---------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       185 ---------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             ---------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence                     2457999999988776   4468999999999999999854

Known examples to date are restricted to the proteobacteria.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=6.4e-13  Score=111.37  Aligned_cols=132  Identities=17%  Similarity=0.236  Sum_probs=90.7

Q ss_pred             ceEeccceeeeecCCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEE
Q 047371            5 PVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMF   84 (222)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v   84 (222)
                      ||.++. +.+.++|.++..-+    ++.|.                 +..+  .|++|||+|||+|+++..++..+++.|
T Consensus        86 Pf~l~g-i~IDtEWrSd~KW~----rl~p~-----------------l~~L--~gk~VLDIGC~nGY~~frM~~~GA~~V  141 (315)
T PF08003_consen   86 PFSLFG-IHIDTEWRSDWKWD----RLLPH-----------------LPDL--KGKRVLDIGCNNGYYSFRMLGRGAKSV  141 (315)
T ss_pred             CcccCC-EeecccccccchHH----HHHhh-----------------hCCc--CCCEEEEecCCCcHHHHHHhhcCCCEE
Confidence            566655 77888887643222    33333                 2222  699999999999999999999998999


Q ss_pred             EEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-
Q 047371           85 VGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP-  163 (222)
Q Consensus        85 ~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-  163 (222)
                      +|+|.++..+-+.+..-...+.. ..+.......+.++                       ..+.||+|+|-.+++|.. 
T Consensus       142 iGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp-----------------------~~~~FDtVF~MGVLYHrr~  197 (315)
T PF08003_consen  142 IGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLP-----------------------NLGAFDTVFSMGVLYHRRS  197 (315)
T ss_pred             EEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhcc-----------------------ccCCcCEEEEeeehhccCC
Confidence            99999998877755433333322 12222212232221                       357899999998888854 


Q ss_pred             --HHHHHHHHcccCCeEEEEecC
Q 047371          164 --QLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       164 --~~l~~~~~~LkpgG~l~~~~~  184 (222)
                        ..+.+++..|+|||.+++.+.
T Consensus       198 Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  198 PLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             HHHHHHHHHHhhCCCCEEEEEEe
Confidence              578999999999999998433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.45  E-value=1.9e-12  Score=115.48  Aligned_cols=140  Identities=14%  Similarity=0.162  Sum_probs=100.2

Q ss_pred             ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      .|..|.....+....++...  .++|.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++...++.  ++
T Consensus       213 ~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v  290 (431)
T PRK14903        213 VIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS--SI  290 (431)
T ss_pred             HHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eE
Confidence            35555554444444444333  457889999999999999988875  3579999999999999999999988875  67


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHH
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLA  166 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l  166 (222)
                      .+...|...+..        .             ..++||.|++++|+..                         ..+++
T Consensus       291 ~~~~~Da~~l~~--------~-------------~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL  349 (431)
T PRK14903        291 EIKIADAERLTE--------Y-------------VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIV  349 (431)
T ss_pred             EEEECchhhhhh--------h-------------hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHH
Confidence            788777654310        0             2457999999988732                         24468


Q ss_pred             HHHHHcccCCeEEEEecC--C-CCcHHHHHHHHHh
Q 047371          167 DHIVSYAKPGAVVGISGI--L-SEQLPRIINRYSE  198 (222)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~--~-~~~~~~~~~~~~~  198 (222)
                      .++.+.|||||.+++++.  . .++...+...+..
T Consensus       350 ~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~  384 (431)
T PRK14903        350 SQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE  384 (431)
T ss_pred             HHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence            999999999999988633  2 3333444444443

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.44  E-value=2.1e-12  Score=100.33  Aligned_cols=120  Identities=21%  Similarity=0.328  Sum_probs=94.8

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCE-EEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAM-FVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      .+|||+|||+|.+...|++.+... ++|+|+|+.+++.|+..+.+.+++ ..|+|...|.....+               
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~~---------------  132 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPDF---------------  132 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCcc---------------
Confidence            499999999999999999876544 999999999999999888888886 359999888765433               


Q ss_pred             ccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcc
Q 047371          139 HEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDI  203 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~  203 (222)
                             ..++||+|+--..++.           +.-++..+.++|+|||+++|. .++...+++++.++.. |...
T Consensus       133 -------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt-SCN~T~dELv~~f~~~~f~~~  201 (227)
T KOG1271|consen  133 -------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT-SCNFTKDELVEEFENFNFEYL  201 (227)
T ss_pred             -------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE-ecCccHHHHHHHHhcCCeEEE
Confidence                   4667788776554432           233688899999999999986 4677888999988876 5443

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.44  E-value=3.3e-12  Score=104.52  Aligned_cols=110  Identities=22%  Similarity=0.342  Sum_probs=85.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+|||+|||+|.++..+++. +..+++++|+++.+++.++.+..      .++.+...+......             
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~-------------   94 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPL-------------   94 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCC-------------
Confidence            3568999999999999988875 45679999999999999987653      255677666654422             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIINR  195 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  195 (222)
                               +.++||+|+++.++++   ...++.++.+.|||||.+++..+......++...
T Consensus        95 ---------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~  147 (240)
T TIGR02072        95 ---------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS  147 (240)
T ss_pred             ---------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence                     4678999999988765   4568999999999999999987665555444433

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.44  E-value=1.9e-12  Score=103.00  Aligned_cols=99  Identities=23%  Similarity=0.340  Sum_probs=77.6

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.++||+|||.|..++.||+.|. .|+++|.|+.+++.+++.+...++   .++....|...+.               
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~---------------   90 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFD---------------   90 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS---------------
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcc---------------
Confidence            467899999999999999999985 799999999999999888877776   3777777765543               


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEec
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              ..+.||+|++..++++     ...+++.+...++|||++++.+
T Consensus        91 --------~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   91 --------FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             ---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --------ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence                    3467999998655554     4568999999999999988743

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.43  E-value=3.4e-12  Score=103.47  Aligned_cols=124  Identities=16%  Similarity=0.205  Sum_probs=89.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+|||+|||+|.++..+++.  +..+|+|+|+++ +          .++  .++.+..+|...... +......+ 
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--~~v~~i~~D~~~~~~-~~~i~~~~-  113 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--VGVDFLQGDFRDELV-LKALLERV-  113 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--CCcEEEecCCCChHH-HHHHHHHh-
Confidence            578899999999999999988875  236899999988 1          122  257788887655310 00000011 


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                  ..++||+|++++..+.              ...+++.+.++|||||.+++..+......++...+...
T Consensus       114 ------------~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~  181 (209)
T PRK11188        114 ------------GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL  181 (209)
T ss_pred             ------------CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhC
Confidence                        4578999999874321              13578999999999999999888888888888888777


Q ss_pred             hhcceec
Q 047371          200 LEDILVS  206 (222)
Q Consensus       200 ~~~~~~~  206 (222)
                      |..++..
T Consensus       182 f~~v~~~  188 (209)
T PRK11188        182 FTKVKVR  188 (209)
T ss_pred             ceEEEEE
Confidence            7666654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.43  E-value=1.4e-12  Score=100.28  Aligned_cols=96  Identities=28%  Similarity=0.389  Sum_probs=74.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||.|.++..+++.+. +++|+|+++.+++.         .   ++.....+.....             
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~---~~~~~~~~~~~~~-------------   73 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------R---NVVFDNFDAQDPP-------------   73 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------T---TSEEEEEECHTHH-------------
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------h---hhhhhhhhhhhhh-------------
Confidence            35788999999999999999988875 99999999999888         1   1222222111111             


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                               .+.++||+|+++..++++   ..+++.+.++|||||+++++....
T Consensus        74 ---------~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   74 ---------FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             ---------CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             ---------ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence                     156789999999998885   558999999999999999976554

...

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.42  E-value=6.6e-12  Score=108.36  Aligned_cols=124  Identities=16%  Similarity=0.175  Sum_probs=90.7

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|.++..+++. +..+++++|.++.+++.|+++...     .++++...+......            
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~------------  174 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPF------------  174 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCC------------
Confidence            46789999999999998887764 557899999999999999987542     255677666654422            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCC----------------CCcHHHHHHHH
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGIL----------------SEQLPRIINRY  196 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~~~~~~~  196 (222)
                                +.++||+|+++..+++   ....++++.+.|||||.+++.+..                ..+.+++.+.+
T Consensus       175 ----------~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL  244 (340)
T PLN02490        175 ----------PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWF  244 (340)
T ss_pred             ----------CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHH
Confidence                      4678999999887764   456899999999999998875321                12345566666


Q ss_pred             Hhh-hhcceecc
Q 047371          197 SEF-LEDILVSE  207 (222)
Q Consensus       197 ~~~-~~~~~~~~  207 (222)
                      ++. |..++..+
T Consensus       245 ~~aGF~~V~i~~  256 (340)
T PLN02490        245 TKAGFKDVKLKR  256 (340)
T ss_pred             HHCCCeEEEEEE
Confidence            654 65555443

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=5.6e-12  Score=112.52  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=91.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++|.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...++.   +.+...|......           
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~---~~~~~~D~~~~~~-----------  307 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK---ATVIVGDARDPAQ-----------  307 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEcCcccchh-----------
Confidence            4578999999999999999988763 369999999999999999999888763   4666666643210           


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC---CC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI---LS  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~---~~  186 (222)
                               +...++||.|++++|+..                         ..+++..+.+.|||||.+++++.   ..
T Consensus       308 ---------~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~  378 (427)
T PRK10901        308 ---------WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE  378 (427)
T ss_pred             ---------hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence                     013467999999988642                         13579999999999999998643   34


Q ss_pred             CcHHHHHHHHHhh
Q 047371          187 EQLPRIINRYSEF  199 (222)
Q Consensus       187 ~~~~~~~~~~~~~  199 (222)
                      ++...+...++.+
T Consensus       379 Ene~~v~~~l~~~  391 (427)
T PRK10901        379 ENEQQIKAFLARH  391 (427)
T ss_pred             hCHHHHHHHHHhC
Confidence            5555555566553

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.42  E-value=2.2e-12  Score=105.23  Aligned_cols=101  Identities=17%  Similarity=0.210  Sum_probs=81.9

Q ss_pred             CcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           60 ELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      ++|||+|||+|..+..+++. +..+++|+|+|+.+++.|++++...++. .++.+...|.....                
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~----------------   63 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDP----------------   63 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCC----------------
Confidence            46999999999999988875 4578999999999999999998887776 47788777653221                


Q ss_pred             ccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          139 HEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             ..++||+|++...+++   ...+++++.++|||||.+++.++
T Consensus        64 -------~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       64 -------FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             -------CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                   2357999999776655   45689999999999999998654

>PRK04457 spermidine synthase; Provisional

Probab=99.40  E-value=2.3e-11  Score=101.92  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=96.2

Q ss_pred             chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +.++.+...+. ..+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+.. .++++...|+..+
T Consensus        52 ~y~~~m~~~l~-~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~~  129 (262)
T PRK04457         52 AYTRAMMGFLL-FNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADGAEY  129 (262)
T ss_pred             HHHHHHHHHHh-cCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCHHHH
Confidence            45555544432 2345789999999999999988764 6678999999999999999987654332 4788888876543


Q ss_pred             ccccccccccchhccccccccCCCCCCCeeEEEeccccc-------cHHHHHHHHHHcccCCeEEEEecCCC-CcHHHHH
Q 047371          122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-------PLPQLADHIVSYAKPGAVVGISGILS-EQLPRII  193 (222)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~  193 (222)
                      ..                   .  ..++||+|+++..-.       ...++++.+.+.|+|||.+++..+.. .....+.
T Consensus       130 l~-------------------~--~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l  188 (262)
T PRK04457        130 IA-------------------V--HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYL  188 (262)
T ss_pred             HH-------------------h--CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHH
Confidence            11                   0  235799999864211       13679999999999999999964432 2345556


Q ss_pred             HHHHhhhh
Q 047371          194 NRYSEFLE  201 (222)
Q Consensus       194 ~~~~~~~~  201 (222)
                      +.+...|.
T Consensus       189 ~~l~~~F~  196 (262)
T PRK04457        189 ERLESSFE  196 (262)
T ss_pred             HHHHHhcC
Confidence            66666665

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.40  E-value=8.8e-12  Score=111.28  Aligned_cols=142  Identities=17%  Similarity=0.152  Sum_probs=95.6

Q ss_pred             cccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE
Q 047371           37 FGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL  113 (222)
Q Consensus        37 f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~  113 (222)
                      |..|..........++...  .++|.+|||+|||+|..+..+++. +.++++|+|+++.+++.+++++...++. ..+.+
T Consensus       215 ~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~  293 (426)
T TIGR00563       215 FEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAET  293 (426)
T ss_pred             hhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE
Confidence            3444443333333333333  457899999999999999998875 4579999999999999999999988875 23333


Q ss_pred             EecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHH
Q 047371          114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADH  168 (222)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~  168 (222)
                      ...+.....                    .+.+.++||.|++++|+..                         ...++.+
T Consensus       294 ~~~d~~~~~--------------------~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~  353 (426)
T TIGR00563       294 KDGDGRGPS--------------------QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA  353 (426)
T ss_pred             ecccccccc--------------------ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH
Confidence            333332110                    0113567999999877543                         2458999


Q ss_pred             HHHcccCCeEEEEecCC---CCcHHHHHHHHHhh
Q 047371          169 IVSYAKPGAVVGISGIL---SEQLPRIINRYSEF  199 (222)
Q Consensus       169 ~~~~LkpgG~l~~~~~~---~~~~~~~~~~~~~~  199 (222)
                      +.++|||||.+++++..   .++...+...+..+
T Consensus       354 a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~  387 (426)
T TIGR00563       354 IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH  387 (426)
T ss_pred             HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence            99999999999986432   24445555555543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK04266 fibrillarin; Provisional

Probab=99.40  E-value=7.7e-11  Score=96.57  Aligned_cols=103  Identities=20%  Similarity=0.211  Sum_probs=75.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.+.+++...    .++.+...|.....     ...+   
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~-----~~~~---  137 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPE-----RYAH---  137 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcc-----hhhh---
Confidence            568999999999999999999875 4468999999999999887766532    25667766654210     0000   


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEE
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~  181 (222)
                                 -.++||+|+++.+..+ ...+++++.+.|||||.+++
T Consensus       138 -----------l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266        138 -----------VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             -----------ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence                       1345999998754322 23458999999999999999

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.40  E-value=8e-12  Score=112.11  Aligned_cols=104  Identities=22%  Similarity=0.250  Sum_probs=84.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..+|.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.+++++...++.  ++.+...|...+.           
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~-----------  314 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIETIEGDARSFS-----------  314 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEEeCcccccc-----------
Confidence            357889999999999999888764  3468999999999999999999988875  6888877765431           


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  +.++||+|++++|+..                         ...++..+.+.|||||++++++.
T Consensus       315 ------------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        315 ------------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             ------------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                        3467999999887532                         12479999999999999998644

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=5.5e-12  Score=112.09  Aligned_cols=152  Identities=22%  Similarity=0.246  Sum_probs=118.5

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ...+.++|. +|-+.+......+.......+.  +++++||+.||.|.+++.+++. ..+|+|+|+++++++.|++|++.
T Consensus       260 ~~~~~~~~~-sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~  337 (432)
T COG2265         260 GVSFQISPR-SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAA  337 (432)
T ss_pred             ceEEEeCCC-CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHH
Confidence            466777777 4445555555555555555543  6789999999999999999966 47999999999999999999999


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-HHHHHHHHcccCCeEEEEe
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP-QLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (222)
                      +++.  |+.|...+.+.+..                   .+.....+|+|+.+||..... .+++.+. .++|..++|+|
T Consensus       338 n~i~--N~~f~~~~ae~~~~-------------------~~~~~~~~d~VvvDPPR~G~~~~~lk~l~-~~~p~~IvYVS  395 (432)
T COG2265         338 NGID--NVEFIAGDAEEFTP-------------------AWWEGYKPDVVVVDPPRAGADREVLKQLA-KLKPKRIVYVS  395 (432)
T ss_pred             cCCC--cEEEEeCCHHHHhh-------------------hccccCCCCEEEECCCCCCCCHHHHHHHH-hcCCCcEEEEe
Confidence            9987  79999888876632                   111245789999999998877 4555544 57888999999


Q ss_pred             cCCCCcHHHHHHHHHhhhh
Q 047371          183 GILSEQLPRIINRYSEFLE  201 (222)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~  201 (222)
                      |.+....+++......++.
T Consensus       396 CNP~TlaRDl~~L~~~gy~  414 (432)
T COG2265         396 CNPATLARDLAILASTGYE  414 (432)
T ss_pred             CCHHHHHHHHHHHHhCCeE
Confidence            9999999999888887654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.40  E-value=8.5e-12  Score=111.94  Aligned_cols=120  Identities=19%  Similarity=0.238  Sum_probs=90.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|..+..+++.  +..+++++|+++.+++.+++++..+++.  ++.+...|...+..       .  
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~-------~--  316 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT--NIETKALDARKVHE-------K--  316 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCCcccccc-------h--
Confidence            357889999999999999998874  4579999999999999999999988875  58888877654310       0  


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecCC--C
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGIL--S  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~--~  186 (222)
                                  ..++||+|++++|+..                         ...++..+.+.|||||.+++++..  .
T Consensus       317 ------------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  384 (444)
T PRK14902        317 ------------FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK  384 (444)
T ss_pred             ------------hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence                        1267999999988532                         134789999999999999976332  2


Q ss_pred             -CcHHHHHHHHHh
Q 047371          187 -EQLPRIINRYSE  198 (222)
Q Consensus       187 -~~~~~~~~~~~~  198 (222)
                       ++...+...++.
T Consensus       385 ~Ene~vv~~~l~~  397 (444)
T PRK14902        385 EENEEVIEAFLEE  397 (444)
T ss_pred             hhhHHHHHHHHHh
Confidence             333444445554

>PRK06922 hypothetical protein; Provisional

Probab=99.40  E-value=4.8e-12  Score=116.04  Aligned_cols=103  Identities=17%  Similarity=0.242  Sum_probs=80.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+|||+|||+|..+..+++ .+..+++|+|+|+.+++.|+++....+.   ++.+...|...+..             
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~---~ie~I~gDa~dLp~-------------  481 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR---SWNVIKGDAINLSS-------------  481 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---CeEEEEcchHhCcc-------------
Confidence            578999999999999888776 4668999999999999999988654442   45666666543310             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc----------------HHHHHHHHHHcccCCeEEEEec
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP----------------LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             ..++++||+|+++.++++                ...+++++.+.|||||.+++.+
T Consensus       482 -------~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        482 -------SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             -------ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                   015678999999987764                2467999999999999999964

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.39  E-value=5.8e-12  Score=99.59  Aligned_cols=117  Identities=17%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      .++||+|||+|.++..|+.. ..+++++|+++.+++.|++++...    .++.+...+...+.                 
T Consensus        45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~-----------------  102 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFW-----------------  102 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT-------------------
T ss_pred             ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCC-----------------
Confidence            58999999999999999987 478999999999999999988643    37889888875542                 


Q ss_pred             cccCCCCCCCeeEEEeccccccH------HHHHHHHHHcccCCeEEEEecCC---------CCcHHHHHHHHHhhhhcce
Q 047371          140 EIRGISETEEYDVVIANILLNPL------PQLADHIVSYAKPGAVVGISGIL---------SEQLPRIINRYSEFLEDIL  204 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~~~~~~~~~~~~  204 (222)
                            +.++||+|++...++++      ..++..+...|+|||.+++....         .-..+.+.+.+.+.+..++
T Consensus       103 ------P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~  176 (201)
T PF05401_consen  103 ------PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVE  176 (201)
T ss_dssp             -------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEE
T ss_pred             ------CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhee
Confidence                  78899999998887764      34689999999999999994332         2244566666666654444

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.39  E-value=1.4e-11  Score=103.98  Aligned_cols=116  Identities=24%  Similarity=0.281  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHhh-hcCCCcEEEEccCCCHH-HHHHHH--hCCCEEEEEeCChHHHHHHHHHHHh-cCCCCCceeEEecCC
Q 047371           44 TTKLCLLLLQSL-IKGGELFLDYGTGSGIL-GIAAIK--FGAAMFVGVDIDPQVIKSAHQNAAL-NNIGPKKIKLHLVPD  118 (222)
Q Consensus        44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~-~~~la~--~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~~~  118 (222)
                      ..+.-..++..+ ..++++|+|+|||.|.+ ++.++.  .+..+++|+|+++.+++.|++.+.. .++. ++++|...|.
T Consensus       108 L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da  186 (296)
T PLN03075        108 LSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADV  186 (296)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECch
Confidence            344444455444 23678999999998744 444443  3667899999999999999999964 6775 5799999887


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEeccccc----cHHHHHHHHHHcccCCeEEEEe
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN----PLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      .....                      ..++||+|++....+    ...++++++.+.|+|||++++-
T Consensus       187 ~~~~~----------------------~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        187 MDVTE----------------------SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             hhccc----------------------ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            54311                      346799999994322    3567899999999999999995

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.39  E-value=1.6e-13  Score=97.80  Aligned_cols=95  Identities=26%  Similarity=0.377  Sum_probs=59.8

Q ss_pred             EEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccc
Q 047371           63 LDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEI  141 (222)
Q Consensus        63 LD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (222)
                      ||+|||+|.++..+... +..+++|+|+|+.+++.|++++......  +............                   
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~-------------------   59 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLF-------------------   59 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---------------------
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChh-------------------
Confidence            79999999999988765 6689999999999999998888766543  2223222221110                   


Q ss_pred             cCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEE
Q 047371          142 RGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVV  179 (222)
Q Consensus       142 ~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l  179 (222)
                       .....++||+|++..+++++   ..++++++++|||||.+
T Consensus        60 -~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   60 -DYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             -hcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence             00023589999999888874   56899999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.39  E-value=1e-12  Score=104.62  Aligned_cols=108  Identities=24%  Similarity=0.355  Sum_probs=86.9

Q ss_pred             hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      ++-..+++... ..+..+|.|+|||+|..+..+++ ++.+.++|+|-|+.|++.|+.+..       +.+|...|.    
T Consensus        16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-------~~~f~~aDl----   84 (257)
T COG4106          16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-------DATFEEADL----   84 (257)
T ss_pred             cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-------CCceecccH----
Confidence            34445566554 34567999999999999998886 578999999999999999977642       455666654    


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEeccccccHH---HHHHHHHHcccCCeEEEEe
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP---QLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~---~~l~~~~~~LkpgG~l~~~  182 (222)
                                         .+|++..++|++++|..++++.   .++..+...|.|||.+.+.
T Consensus        85 -------------------~~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          85 -------------------RTWKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             -------------------hhcCCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence                               4456889999999999998865   5899999999999999985

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.39  E-value=5.9e-12  Score=105.98  Aligned_cols=120  Identities=19%  Similarity=0.235  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHhhhc-CCCcEEEEccCCCHHHHHHHHh-C---CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           44 TTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKF-G---AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        44 ~~~~~~~~l~~~~~-~~~~vLD~G~G~G~~~~~la~~-~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      ..+.+...+...++ ++.+|||+|||+|.++..+++. +   ..+++|+|+|+.+++.|+++.       .++.+...+.
T Consensus        70 l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~  142 (272)
T PRK11088         70 LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASS  142 (272)
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeec
Confidence            33444455554433 4578999999999999988764 2   247999999999999997653       1456666666


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                      ..+++                      ++++||+|++...    ...++++.++|||||++++.........++.+..
T Consensus       143 ~~lp~----------------------~~~sfD~I~~~~~----~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~  194 (272)
T PRK11088        143 HRLPF----------------------ADQSLDAIIRIYA----PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI  194 (272)
T ss_pred             ccCCC----------------------cCCceeEEEEecC----CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence            54432                      5778999998653    2346889999999999999877666666665554

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.38  E-value=8.3e-12  Score=108.99  Aligned_cols=117  Identities=13%  Similarity=0.217  Sum_probs=91.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .+..+||+|||+|.++..+|+. +..+++|+|+++.++..|.+++..+++.  ++.+...|+..+.       .      
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll-------~------  186 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK--NLLIINYDARLLL-------E------  186 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHhh-------h------
Confidence            4568999999999999998875 6679999999999999999999888875  7888888875431       0      


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH---------HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL---------PQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~---------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                             ..+++++|.|+++.|..+.         ..++..+.++|+|||.+.+.+-...-.....+.+
T Consensus       187 -------~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~  248 (390)
T PRK14121        187 -------LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF  248 (390)
T ss_pred             -------hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence                   1167889999998876542         5789999999999999999644433333433443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.4e-11  Score=100.67  Aligned_cols=124  Identities=25%  Similarity=0.306  Sum_probs=104.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.||++|+|.|+|+|.++..++..  +.++|+..|+.+..++.|++|+...++. +++.+...|.....           
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~-----------  159 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGI-----------  159 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEeccccccc-----------
Confidence            668999999999999999999963  5589999999999999999999998887 35877777765442           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhccee
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILV  205 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (222)
                                  ..+.||.|+.+.|-  ..+.++++.++|||||.+++.....+|..+..+.+++. |..++.
T Consensus       160 ------------~~~~vDav~LDmp~--PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~  218 (256)
T COG2519         160 ------------DEEDVDAVFLDLPD--PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA  218 (256)
T ss_pred             ------------cccccCEEEEcCCC--hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence                        23489999988765  47899999999999999999888889999999998887 544443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.38  E-value=2.5e-11  Score=99.35  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=83.4

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|.++..++...  ..+++++|+++.+++.+++++...+.. .++.+...+......           
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~-----------  117 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPF-----------  117 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCC-----------
Confidence            467899999999999999888764  489999999999999999988665443 367777776654321           


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 ..++||+|+++..+++   ...+++.+.++|+|||.+++.+.
T Consensus       118 -----------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        118 -----------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             -----------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence                       4568999998766554   56789999999999999988644

>PRK05785 hypothetical protein; Provisional

Probab=99.38  E-value=1.7e-11  Score=100.58  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=72.6

Q ss_pred             HHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        50 ~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      ..+.....++.+|||+|||+|.++..+++....+++|+|+|+.|++.|++..          .+...+.+.+++      
T Consensus        43 ~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~----------~~~~~d~~~lp~------  106 (226)
T PRK05785         43 KTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD----------DKVVGSFEALPF------  106 (226)
T ss_pred             HHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc----------ceEEechhhCCC------
Confidence            3333333457899999999999999988763368999999999999997631          133445544432      


Q ss_pred             ccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCC
Q 047371          130 DGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPG  176 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lkpg  176 (222)
                                      ++++||+|+++..+++   ....++++.|.|||.
T Consensus       107 ----------------~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        107 ----------------RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             ----------------CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence                            6789999999888765   456899999999995

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.37  E-value=2.3e-11  Score=98.66  Aligned_cols=99  Identities=13%  Similarity=0.158  Sum_probs=79.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|..+..+++.. .+++++|+++.+++.|++++...++.  ++.+...+....              
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~--------------  138 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH--NVSVRHGDGWKG--------------  138 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC--ceEEEECCcccC--------------
Confidence            4578899999999999998887764 58999999999999999999887775  677777765321              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              +...++||+|+++.....   +.+.+.+.|+|||.+++.
T Consensus       139 --------~~~~~~fD~I~~~~~~~~---~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        139 --------WPAYAPFDRILVTAAAPE---IPRALLEQLKEGGILVAP  174 (212)
T ss_pred             --------CCcCCCcCEEEEccCchh---hhHHHHHhcCCCcEEEEE
Confidence                    113468999999876654   356788999999999985

>PRK08317 hypothetical protein; Provisional

Probab=99.36  E-value=2.2e-11  Score=99.44  Aligned_cols=103  Identities=18%  Similarity=0.233  Sum_probs=81.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.++.+|||+|||+|.++..++..  +..+++|+|+++.+++.++++.....   .++.+...+......          
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~----------   83 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFVRGDADGLPF----------   83 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEEecccccCCC----------
Confidence            457889999999999999988875  35789999999999999988732221   367777776644322          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                  +.++||+|+++..+++   ...+++++.++|||||.+++..
T Consensus        84 ------------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         84 ------------PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             ------------CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence                        4678999999877765   4668999999999999998854

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.1e-11  Score=99.23  Aligned_cols=99  Identities=20%  Similarity=0.318  Sum_probs=83.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++++|||+|||+|+.+..+++.. .+|+.+|..++..+.|++++...++.  |+.+.++|...               
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gDG~~---------------  131 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYE--NVTVRHGDGSK---------------  131 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECCccc---------------
Confidence            6789999999999999999999985 49999999999999999999999986  79998888632               


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             .|.+..+||.|+........   -+.+.+.||+||++++-
T Consensus       132 -------G~~~~aPyD~I~Vtaaa~~v---P~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         132 -------GWPEEAPYDRIIVTAAAPEV---PEALLDQLKPGGRLVIP  168 (209)
T ss_pred             -------CCCCCCCcCEEEEeeccCCC---CHHHHHhcccCCEEEEE
Confidence                   24467899999987765433   34566789999999983

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.36  E-value=1.6e-11  Score=101.12  Aligned_cols=109  Identities=11%  Similarity=0.144  Sum_probs=87.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++|||+|||+|..++.++..  +.++++++|+++.+++.|++++..+++. +++++..+++.....       .+  
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~-------~l--  136 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSALD-------QL--  136 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHHHH-------HH--
Confidence            45889999999999988887764  4579999999999999999999999987 588898887754310       00  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             ....+.++||+|+++..-..+..+++.+.+.|+|||.+++.
T Consensus       137 -------~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        137 -------LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             -------HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                   00002468999999887777888999999999999999974

>PRK00811 spermidine synthase; Provisional

Probab=99.35  E-value=4.7e-11  Score=101.08  Aligned_cols=142  Identities=14%  Similarity=0.183  Sum_probs=101.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC--C-CCCceeEEecCCccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN--I-GPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      .+++++||++|||+|..+..+++. +..+|+++|+++.+++.|++.+...+  . ...++++...|+..+..        
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~--------  145 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA--------  145 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh--------
Confidence            356789999999999999988876 56799999999999999999876422  1 23578888888755421        


Q ss_pred             chhccccccccCCCCCCCeeEEEeccc--ccc-----HHHHHHHHHHcccCCeEEEEecC-C---CCcHHHHHHHHHhhh
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANIL--LNP-----LPQLADHIVSYAKPGAVVGISGI-L---SEQLPRIINRYSEFL  200 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~--~~~-----~~~~l~~~~~~LkpgG~l~~~~~-~---~~~~~~~~~~~~~~~  200 (222)
                                   ...++||+|+++..  ...     ..++++.+.+.|+|||.+++..- .   ......+.+.+.+.|
T Consensus       146 -------------~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F  212 (283)
T PRK00811        146 -------------ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF  212 (283)
T ss_pred             -------------hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC
Confidence                         03568999999742  211     25678999999999999988421 1   233455555666655


Q ss_pred             hccee-------cccCCceEeeccc
Q 047371          201 EDILV-------SEKDDWRCVSGTK  218 (222)
Q Consensus       201 ~~~~~-------~~~~~w~~~~~~k  218 (222)
                      .....       ...+.|.-+.+++
T Consensus       213 ~~v~~~~~~vp~~~~~~w~f~~as~  237 (283)
T PRK00811        213 PIVRPYQAAIPTYPSGLWSFTFASK  237 (283)
T ss_pred             CCEEEEEeECCcccCchheeEEeec
Confidence            54443       2357787777766

>PLN02672 methionine S-methyltransferase

Probab=99.35  E-value=4.8e-11  Score=115.45  Aligned_cols=148  Identities=15%  Similarity=0.176  Sum_probs=104.1

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhc---CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHH
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQN  100 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~---~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~  100 (222)
                      ....+.++|+.--   ..+-+..+.+.+.....   ++.+|||+|||+|.+++.++.. +..+++|+|+|+.+++.|+.|
T Consensus        85 ~~l~~~V~p~VLI---PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N  161 (1082)
T PLN02672         85 KKLTMMEIPSIFI---PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN  161 (1082)
T ss_pred             cCCceeeCCCccc---CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            3466888888543   23444444444533211   2468999999999999998875 457999999999999999999


Q ss_pred             HHhcCCC--------------CCceeEEecCCcccccccccccccchhccccccccCCCC-CCCeeEEEecccccc----
Q 047371          101 AALNNIG--------------PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISE-TEEYDVVIANILLNP----  161 (222)
Q Consensus       101 ~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~v~~~~~~~~----  161 (222)
                      +..++++              .+++.+...|.....                      .. ..+||+|++|||+-.    
T Consensus       162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~----------------------~~~~~~fDlIVSNPPYI~~~e~  219 (1082)
T PLN02672        162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC----------------------RDNNIELDRIVGCIPQILNPNP  219 (1082)
T ss_pred             HHHcCcccccccccccccccccccEEEEECchhhhc----------------------cccCCceEEEEECCCcCCCcch
Confidence            9876542              135777777653221                      01 236999999998521    


Q ss_pred             -------------------------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHH-HHHHh
Q 047371          162 -------------------------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRII-NRYSE  198 (222)
Q Consensus       162 -------------------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~  198 (222)
                                                           +..+++++.++|+|||.+++. +...+...+. +.++.
T Consensus       220 ~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE-iG~~q~~~v~~~l~~~  293 (1082)
T PLN02672        220 EAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN-MGGRPGQAVCERLFER  293 (1082)
T ss_pred             hhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE-ECccHHHHHHHHHHHH
Confidence                                                 245678889999999998875 6777777777 46654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.35  E-value=1.7e-11  Score=107.19  Aligned_cols=157  Identities=14%  Similarity=0.111  Sum_probs=105.9

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhhc-CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ..+.++|+..| +.+......+.+.+...+. .+.++||++||+|.+++.+++. ..+|+|+|.++.+++.|++|+..++
T Consensus       175 ~~~~~~~~sF~-Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~  252 (362)
T PRK05031        175 FIYRQVENSFT-QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG  252 (362)
T ss_pred             EEEEeCCCCee-ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC
Confidence            45677776655 4455555555555555543 2357999999999999988876 4689999999999999999999888


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCC-CCCCeeEEEeccccccH-HHHHHHHHHcccCCeEEEEec
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGIS-ETEEYDVVIANILLNPL-PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      +.  ++.+...|+..+...+... ...      ....... ...+||+|+.+||...+ .++++.+.+   |++.+|++|
T Consensus       253 ~~--~v~~~~~d~~~~l~~~~~~-~~~------~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvSC  320 (362)
T PRK05031        253 ID--NVQIIRMSAEEFTQAMNGV-REF------NRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYISC  320 (362)
T ss_pred             CC--cEEEEECCHHHHHHHHhhc-ccc------cccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEEe
Confidence            75  7889888875532100000 000      0000000 02258999999998653 445666654   799999999


Q ss_pred             CCCCcHHHHHHHHH
Q 047371          184 ILSEQLPRIINRYS  197 (222)
Q Consensus       184 ~~~~~~~~~~~~~~  197 (222)
                      .+....+++.....
T Consensus       321 ~p~tlarDl~~L~~  334 (362)
T PRK05031        321 NPETLCENLETLSQ  334 (362)
T ss_pred             CHHHHHHHHHHHcC
Confidence            88777777776543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.34  E-value=9e-12  Score=100.79  Aligned_cols=111  Identities=23%  Similarity=0.373  Sum_probs=82.2

Q ss_pred             hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +.....++..+ +++|++|||+|||+|+.+..++.. + ...|+++|.++..++.|++++...++.  ++.+...|...-
T Consensus        58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~--nv~~~~gdg~~g  135 (209)
T PF01135_consen   58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID--NVEVVVGDGSEG  135 (209)
T ss_dssp             HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH--SEEEEES-GGGT
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC--ceeEEEcchhhc
Confidence            34444444444 789999999999999999999886 3 357999999999999999999988875  888888876321


Q ss_pred             ccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                            +....+||.|++......   +-..+.+.||+||++++-
T Consensus       136 ----------------------~~~~apfD~I~v~~a~~~---ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  136 ----------------------WPEEAPFDRIIVTAAVPE---IPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             ----------------------TGGG-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred             ----------------------cccCCCcCEEEEeeccch---HHHHHHHhcCCCcEEEEE
Confidence                                  224668999999887753   345677889999999983

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PHA03412 putative methyltransferase; Provisional

Probab=99.34  E-value=1.6e-11  Score=100.30  Aligned_cols=111  Identities=15%  Similarity=0.077  Sum_probs=77.7

Q ss_pred             CCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh----CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEe
Q 047371           40 GEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF----GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL  115 (222)
Q Consensus        40 ~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~  115 (222)
                      |.+.|+.-+...+......+.+|||+|||+|.++..+++.    +..+|+++|+++.+++.|+++..       ++.+..
T Consensus        31 GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~  103 (241)
T PHA03412         31 GAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWIN  103 (241)
T ss_pred             CccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEE
Confidence            4444555453333211224679999999999999988764    34689999999999999997742       355666


Q ss_pred             cCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---------------HHHHHHHHHHcccCCeEEE
Q 047371          116 VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------LPQLADHIVSYAKPGAVVG  180 (222)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------~~~~l~~~~~~LkpgG~l~  180 (222)
                      .|.....                       ..++||+|++|||+..               ...++..+.+++++|+. +
T Consensus       104 ~D~~~~~-----------------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-I  159 (241)
T PHA03412        104 ADALTTE-----------------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-I  159 (241)
T ss_pred             cchhccc-----------------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-E
Confidence            6654321                       2458999999999863               22367888887777765 4


Q ss_pred             E
Q 047371          181 I  181 (222)
Q Consensus       181 ~  181 (222)
                      +
T Consensus       160 L  160 (241)
T PHA03412        160 I  160 (241)
T ss_pred             e
Confidence            4

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.34  E-value=3.4e-11  Score=99.51  Aligned_cols=128  Identities=19%  Similarity=0.198  Sum_probs=99.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.||++|+|.|+|+|.++..+++.  +.++|+..|+.+..++.|++++..+++. +++++...|...--+     ..+  
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~-----~~~--  109 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEEGF-----DEE--  109 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG-------STT--
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceecccc-----ccc--
Confidence            789999999999999999999974  5689999999999999999999999986 589999888743210     000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcc-cCCeEEEEecCCCCcHHHHHHHHHhh-hhccee
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYA-KPGAVVGISGILSEQLPRIINRYSEF-LEDILV  205 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (222)
                                  ....+|.|+.+.|-.  ...+..+.+.| |+||++++....-+|..+..+.+.+. |..+++
T Consensus       110 ------------~~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~  169 (247)
T PF08704_consen  110 ------------LESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET  169 (247)
T ss_dssp             -------------TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ------------ccCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence                        246799999987654  56788899999 99999999877888999999998885 655544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.33  E-value=3.4e-11  Score=96.14  Aligned_cols=122  Identities=18%  Similarity=0.178  Sum_probs=91.0

Q ss_pred             CcchhHHHHHHHHhhhc---CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371           41 EHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP  117 (222)
Q Consensus        41 ~~~~~~~~~~~l~~~~~---~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~  117 (222)
                      .++++..+.+.+-..+.   ++.++||++||+|.+++.+++.+..+++++|.++.+++.+++|+..+++. +++.+...|
T Consensus        29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D  107 (189)
T TIGR00095        29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNS  107 (189)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehh
Confidence            56777777766655432   58899999999999999999988789999999999999999999988875 467787777


Q ss_pred             CcccccccccccccchhccccccccCCC-CCCCeeEEEecccccc--HHHHHHHHH--HcccCCeEEEEe
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGIS-ETEEYDVVIANILLNP--LPQLADHIV--SYAKPGAVVGIS  182 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~--~~~~l~~~~--~~LkpgG~l~~~  182 (222)
                      ...+..                   .+. ....+|+|+.+||+..  ..++++.+.  .+|+++|.+++.
T Consensus       108 ~~~~l~-------------------~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       108 ALRALK-------------------FLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             HHHHHH-------------------HhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence            633210                   000 1235899999999853  444555443  368899988875

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.33  E-value=2.9e-11  Score=105.41  Aligned_cols=157  Identities=16%  Similarity=0.137  Sum_probs=106.0

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhhc-CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ..+.++|+..| +.+......+.+.+.+... .+.++||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+..++
T Consensus       166 ~~~~~~~~~F~-Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~  243 (353)
T TIGR02143       166 FIYRQVENSFT-QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANN  243 (353)
T ss_pred             EEEEECCCCcc-cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence            34666666544 4455555555555555543 24579999999999999888764 689999999999999999999998


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCC-CCCCeeEEEeccccccH-HHHHHHHHHcccCCeEEEEec
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGIS-ETEEYDVVIANILLNPL-PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      +.  ++.+...|...+....   . +....+ +  ..... ....+|+|+.+||...+ ..+++.+.+   |++.+|++|
T Consensus       244 ~~--~v~~~~~d~~~~~~~~---~-~~~~~~-~--~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC  311 (353)
T TIGR02143       244 ID--NVQIIRMSAEEFTQAM---N-GVREFR-R--LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISC  311 (353)
T ss_pred             CC--cEEEEEcCHHHHHHHH---h-hccccc-c--ccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEc
Confidence            85  7888888775442100   0 000000 0  00000 01248999999997653 455666654   799999999


Q ss_pred             CCCCcHHHHHHHHH
Q 047371          184 ILSEQLPRIINRYS  197 (222)
Q Consensus       184 ~~~~~~~~~~~~~~  197 (222)
                      .+....+++.....
T Consensus       312 ~p~tlaRDl~~L~~  325 (353)
T TIGR02143       312 NPETLKANLEQLSE  325 (353)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999987653

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.33  E-value=4.2e-11  Score=95.34  Aligned_cols=122  Identities=20%  Similarity=0.278  Sum_probs=82.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+|||+|||+|.++..++..  +..+++++|+++.+           ..  .++.+...+......     ...  
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~--~~i~~~~~d~~~~~~-----~~~--   89 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI--ENVDFIRGDFTDEEV-----LNK--   89 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC--CCceEEEeeCCChhH-----HHH--
Confidence            568999999999999999988764  34689999999854           11  245555555432210     000  


Q ss_pred             hccccccccCCCCCCCeeEEEecccc--------cc------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILL--------NP------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~--------~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                             +....+.++||+|+++...        ++      ...++..+.+.|+|||.+++..+......++...+...
T Consensus        90 -------l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~  162 (188)
T TIGR00438        90 -------IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL  162 (188)
T ss_pred             -------HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence                   0000145679999997531        11      25689999999999999999767777777777777666


Q ss_pred             hhcce
Q 047371          200 LEDIL  204 (222)
Q Consensus       200 ~~~~~  204 (222)
                      +...+
T Consensus       163 ~~~~~  167 (188)
T TIGR00438       163 FEKVK  167 (188)
T ss_pred             hceEE
Confidence            53333

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.32  E-value=3.1e-11  Score=97.49  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=73.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|+++..       ++.+...+... ..           
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~-~~-----------  101 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFD-PF-----------  101 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccC-CC-----------
Confidence            456789999999999999988875 56799999999999999987642       33455554432 11           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 ++++||+|+++..++++     ..+++++.+.+  ++++++.+.
T Consensus       102 -----------~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~  143 (204)
T TIGR03587       102 -----------KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY  143 (204)
T ss_pred             -----------CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence                       57789999999887664     45678888876  457777544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.32  E-value=3.2e-11  Score=98.26  Aligned_cols=99  Identities=24%  Similarity=0.389  Sum_probs=77.0

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..++..+ .+++|+|+++.++..|++++...+.. .++.+...+....               
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~---------------  116 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSL---------------  116 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhC---------------
Confidence            357899999999999999998764 58999999999999999988766553 3677877766443               


Q ss_pred             ccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (222)
                               + ++||+|++...+.+     ...++.++.+.+++++++.+.
T Consensus       117 ---------~-~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       117 ---------C-GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             ---------C-CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence                     3 67999998665543     335688888888877666653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=4.3e-11  Score=92.96  Aligned_cols=136  Identities=21%  Similarity=0.318  Sum_probs=105.4

Q ss_pred             CCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .+-++|+|||+|..+..+++.  +...+.++|+||.+++..++.+..++.   ++..+..|...          ++    
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~----------~l----  106 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLS----------GL----  106 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHh----------hh----
Confidence            567999999999999988875  567899999999999999999888775   35555554321          11    


Q ss_pred             ccccccCCCCCCCeeEEEecccccc------------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP------------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                               ..+++|+++.|||+-.                        +..++.++-.+|.|.|.+|+..+..+...++
T Consensus       107 ---------~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei  177 (209)
T KOG3191|consen  107 ---------RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI  177 (209)
T ss_pred             ---------ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH
Confidence                     3488999999999743                        3457888889999999999998889999999


Q ss_pred             HHHHHhh-h-hcceecccCCceEeecccCC
Q 047371          193 INRYSEF-L-EDILVSEKDDWRCVSGTKFS  220 (222)
Q Consensus       193 ~~~~~~~-~-~~~~~~~~~~w~~~~~~k~~  220 (222)
                      .+.++.. + ..+-..++-+|.-+...|+.
T Consensus       178 ~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~  207 (209)
T KOG3191|consen  178 LKILEKKGYGVRIAMQRKAGGETLSILKFT  207 (209)
T ss_pred             HHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence            9977765 3 33344567778777776654

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.31  E-value=1e-10  Score=96.35  Aligned_cols=138  Identities=15%  Similarity=0.197  Sum_probs=95.5

Q ss_pred             CcchhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEe
Q 047371           41 EHATTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL  115 (222)
Q Consensus        41 ~~~~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~  115 (222)
                      ..++...+...++..    ..++..++|+|||+|.+++.++. .+...++|+|.|+.++..|.+|+.++.+. .++.+..
T Consensus       127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~  205 (328)
T KOG2904|consen  127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIH  205 (328)
T ss_pred             CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEe
Confidence            344555555444433    22456899999999999998776 47789999999999999999999998887 4666664


Q ss_pred             cCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------------HHHHH
Q 047371          116 VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------------LPQLA  166 (222)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------------~~~~l  166 (222)
                      ...+.-..    ...++             ..++.|++++|||+-.                             +..+.
T Consensus       206 ~~me~d~~----~~~~l-------------~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~  268 (328)
T KOG2904|consen  206 NIMESDAS----DEHPL-------------LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYW  268 (328)
T ss_pred             cccccccc----ccccc-------------ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHH
Confidence            43221100    00001             5688999999999632                             23467


Q ss_pred             HHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          167 DHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                      .-+.|+|+|||++.+......+-..+...+
T Consensus       269 ~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~  298 (328)
T KOG2904|consen  269 LLATRMLQPGGFEQLELVERKEHSYLVRIW  298 (328)
T ss_pred             HhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence            888999999999999755334444444443

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.31  E-value=4.5e-11  Score=93.61  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=77.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.++||+|||+|.++..+++. ..+++++|+++.+++.+++++..  .  .++++...|+..+..            
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~--~~v~ii~~D~~~~~~------------   73 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--A--DNLTVIHGDALKFDL------------   73 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--C--CCEEEEECchhcCCc------------
Confidence            356789999999999999999887 47899999999999999988743  1  378888888765532            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHc--ccCCeEEEE
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSY--AKPGAVVGI  181 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~--LkpgG~l~~  181 (222)
                                +...+|.|++|+|++....++..+.+.  +.++|.+++
T Consensus        74 ----------~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       74 ----------PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             ----------cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence                      344689999999998766666666654  346777776

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.30  E-value=1.9e-11  Score=97.01  Aligned_cols=124  Identities=21%  Similarity=0.265  Sum_probs=88.9

Q ss_pred             CcchhHHHHHHHHhhhc----CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec
Q 047371           41 EHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV  116 (222)
Q Consensus        41 ~~~~~~~~~~~l~~~~~----~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~  116 (222)
                      -.|++..+.+.+=..+.    +|.++||++||+|.+++.+++.|+.+++.+|.++.+++..++|+...++. .++.....
T Consensus        21 ~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v~~~   99 (183)
T PF03602_consen   21 TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRVIKG   99 (183)
T ss_dssp             S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEEEES
T ss_pred             cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceeeecc
Confidence            57777777776655533    58999999999999999999999999999999999999999999988876 35777776


Q ss_pred             CCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHH--HcccCCeEEEEec
Q 047371          117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIV--SYAKPGAVVGISG  183 (222)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~--~~LkpgG~l~~~~  183 (222)
                      |...+-.       ..           .....+||+|+++||+..   +.++++.+.  .+|+++|.+++..
T Consensus       100 d~~~~l~-------~~-----------~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  100 DAFKFLL-------KL-----------AKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             SHHHHHH-------HH-----------HHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CHHHHHH-------hh-----------cccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            6432210       00           004678999999999975   256777776  7999999999864

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.29  E-value=6.8e-11  Score=95.83  Aligned_cols=102  Identities=22%  Similarity=0.336  Sum_probs=80.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCC--CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGA--AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..+..+++...  .+++++|+++.+++.++++..   . ..++.+...+......           
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-~~~i~~~~~d~~~~~~-----------  102 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-PLNIEFIQADAEALPF-----------  102 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-CCCceEEecchhcCCC-----------
Confidence            3688999999999999998887643  589999999999999988765   1 1367777776654321           


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 +.++||+|+++..+++   ...+++.+.+.|+|||.+++.+.
T Consensus       103 -----------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       103 -----------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             -----------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence                       4568999999776654   45689999999999999998654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PHA03411 putative methyltransferase; Provisional

Probab=99.29  E-value=3.9e-11  Score=100.04  Aligned_cols=130  Identities=17%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             CCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           40 GEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        40 ~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      |.+.++..+...+......+.+|||+|||+|.++..++.. +..+++++|+++.+++.++++..       ++.+...|.
T Consensus        46 G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~  118 (279)
T PHA03411         46 GAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDV  118 (279)
T ss_pred             eeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECch
Confidence            4445555555333212234578999999999998887764 34799999999999999987631       456777766


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------HHHHHHHHHHcccC
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------LPQLADHIVSYAKP  175 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------~~~~l~~~~~~Lkp  175 (222)
                      ..+.                       ...+||+|++|+|+.+                       +.+++.....+|+|
T Consensus       119 ~e~~-----------------------~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p  175 (279)
T PHA03411        119 FEFE-----------------------SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP  175 (279)
T ss_pred             hhhc-----------------------ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC
Confidence            4431                       3467999999999865                       13466778899999


Q ss_pred             CeEEEEe--c----CCCCcHHHHHHHHHhh
Q 047371          176 GAVVGIS--G----ILSEQLPRIINRYSEF  199 (222)
Q Consensus       176 gG~l~~~--~----~~~~~~~~~~~~~~~~  199 (222)
                      +|.+++.  .    ..+-...+..+.+.+.
T Consensus       176 ~G~~~~~yss~~~y~~sl~~~~y~~~l~~~  205 (279)
T PHA03411        176 TGSAGFAYSGRPYYDGTMKSNKYLKWSKQT  205 (279)
T ss_pred             CceEEEEEeccccccccCCHHHHHHHHHhc
Confidence            9987662  1    1234456666666654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.29  E-value=3.1e-11  Score=96.90  Aligned_cols=135  Identities=22%  Similarity=0.324  Sum_probs=94.3

Q ss_pred             CCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHH
Q 047371           18 WSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKS   96 (222)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~   96 (222)
                      +.+...+....+.++....|......+.+   .-+.+.++++..|+|++||.|.+++.+++. +.+.|+++|++|.+++.
T Consensus        64 ~~t~~~E~G~~f~~D~~kvyfs~rl~~Er---~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~  140 (200)
T PF02475_consen   64 TETIHKENGIRFKVDLSKVYFSPRLSTER---RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY  140 (200)
T ss_dssp             SEEEEEETTEEEEEETTTS---GGGHHHH---HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH
T ss_pred             eEEEEEeCCEEEEEccceEEEccccHHHH---HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH
Confidence            45556667888999988766332222222   233345788999999999999999999983 45789999999999999


Q ss_pred             HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC
Q 047371           97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG  176 (222)
Q Consensus        97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg  176 (222)
                      +++++..+++. .++.....|...+.                       +.+.+|.|+++.|-... .++..+.+++++|
T Consensus       141 L~~Ni~lNkv~-~~i~~~~~D~~~~~-----------------------~~~~~drvim~lp~~~~-~fl~~~~~~~~~~  195 (200)
T PF02475_consen  141 LKENIRLNKVE-NRIEVINGDAREFL-----------------------PEGKFDRVIMNLPESSL-EFLDAALSLLKEG  195 (200)
T ss_dssp             HHHHHHHTT-T-TTEEEEES-GGG--------------------------TT-EEEEEE--TSSGG-GGHHHHHHHEEEE
T ss_pred             HHHHHHHcCCC-CeEEEEcCCHHHhc-----------------------CccccCEEEECChHHHH-HHHHHHHHHhcCC
Confidence            99999999997 57888888876552                       36789999999876643 6888899999999


Q ss_pred             eEEE
Q 047371          177 AVVG  180 (222)
Q Consensus       177 G~l~  180 (222)
                      |.+-
T Consensus       196 g~ih  199 (200)
T PF02475_consen  196 GIIH  199 (200)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            8874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.28  E-value=5e-11  Score=96.21  Aligned_cols=111  Identities=14%  Similarity=0.203  Sum_probs=89.4

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+.++|||+||+.|+.++.+++.  ..++|+.+|.++...+.|++++...++. +++++..+++..+...+.+       
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~~l~~l~~-------  115 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALEVLPELAN-------  115 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHHHHHHHHH-------
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHhhHHHHHh-------
Confidence            36889999999999999999974  3579999999999999999999999986 6899999887543211000       


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               -.+.++||+|+.+..-..+..+++.+.++|+|||.+++...
T Consensus       116 ---------~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  116 ---------DGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             ---------TTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             ---------ccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence                     00246899999998888899999999999999999999533

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.28  E-value=2.1e-11  Score=102.25  Aligned_cols=103  Identities=13%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             CCCcEEEEccCCCH----HHHHHHHh-C-----CCEEEEEeCChHHHHHHHHHHHh----cCCCC---------------
Q 047371           58 GGELFLDYGTGSGI----LGIAAIKF-G-----AAMFVGVDIDPQVIKSAHQNAAL----NNIGP---------------  108 (222)
Q Consensus        58 ~~~~vLD~G~G~G~----~~~~la~~-~-----~~~v~gvD~s~~~l~~a~~~~~~----~~~~~---------------  108 (222)
                      ++.+|||+|||+|.    +++.+++. +     ..+|+|+|+|+.+++.|++.+..    .++..               
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            35699999999996    45555543 1     35899999999999999986421    11110               


Q ss_pred             ------CceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCe
Q 047371          109 ------KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGA  177 (222)
Q Consensus       109 ------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG  177 (222)
                            .++.|...|....                      ..+.++||+|+|...++++     ..+++++++.|+|||
T Consensus       179 v~~~ir~~V~F~~~dl~~~----------------------~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG  236 (264)
T smart00138      179 VKPELKERVRFAKHNLLAE----------------------SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG  236 (264)
T ss_pred             EChHHhCcCEEeeccCCCC----------------------CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence                  1334444443322                      1246789999997666543     358999999999999


Q ss_pred             EEEEe
Q 047371          178 VVGIS  182 (222)
Q Consensus       178 ~l~~~  182 (222)
                      ++++.
T Consensus       237 ~L~lg  241 (264)
T smart00138      237 YLFLG  241 (264)
T ss_pred             EEEEE
Confidence            99994

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02366 spermidine synthase

Probab=99.28  E-value=2.9e-10  Score=97.12  Aligned_cols=144  Identities=16%  Similarity=0.144  Sum_probs=101.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhc--CCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALN--NIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+++++||++|||.|..+..+++.+ ..+++.+|+++.+++.|++.+...  ++...++++...|+..+..       . 
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-------~-  160 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-------N-  160 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-------h-
Confidence            4567899999999999999998875 468999999999999999987542  3444688999888754421       0 


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEe-c--C-CCCcHHHHHHHHHhhhh
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGIS-G--I-LSEQLPRIINRYSEFLE  201 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~-~--~-~~~~~~~~~~~~~~~~~  201 (222)
                                  .+.++||+|+++..-..       ..++++.+.+.|+|||.++.. +  + .......+.+.+.+.|.
T Consensus       161 ------------~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~  228 (308)
T PLN02366        161 ------------APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFK  228 (308)
T ss_pred             ------------ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCC
Confidence                        03567999999753311       346899999999999999873 1  1 22334455666666662


Q ss_pred             -cc-------eecccCCceEeecccC
Q 047371          202 -DI-------LVSEKDDWRCVSGTKF  219 (222)
Q Consensus       202 -~~-------~~~~~~~w~~~~~~k~  219 (222)
                       .+       +....+.|.-+.+.|.
T Consensus       229 ~~v~~~~~~vPsy~~g~w~f~~as~~  254 (308)
T PLN02366        229 GSVNYAWTTVPTYPSGVIGFVLCSKE  254 (308)
T ss_pred             CceeEEEecCCCcCCCceEEEEEECC
Confidence             22       2234477877777664

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.28  E-value=3.6e-11  Score=104.76  Aligned_cols=163  Identities=18%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhhhcC-CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKG-GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~-~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ...+.++|+..|.. +......+.+.+...+++ +..+||+.||.|.+++.++... .+|+|+|+++.+++.|+.|+..+
T Consensus       164 ~~~~~~~~~sFfQv-N~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N  241 (352)
T PF05958_consen  164 GLSFRISPGSFFQV-NPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLN  241 (352)
T ss_dssp             TEEEEEETTS---S-BHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCccC-cHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHc
Confidence            35678888876644 444444454444444332 3379999999999999998774 78999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCC-CCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEEe
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGI-SETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~~  182 (222)
                      ++.  ++++...+++.+...+...       +.-..+... .....+|+|+.+||...+.. +++.+.   ++.-.+|+|
T Consensus       242 ~i~--n~~f~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~~ivYvS  309 (352)
T PF05958_consen  242 GID--NVEFIRGDAEDFAKALAKA-------REFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KLKRIVYVS  309 (352)
T ss_dssp             T----SEEEEE--SHHCCCHHCCS--------GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HSSEEEEEE
T ss_pred             CCC--cceEEEeeccchhHHHHhh-------HHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cCCeEEEEE
Confidence            986  8999887765542111000       000000000 02346899999999877654 444443   346789999


Q ss_pred             cCCCCcHHHHHHHHHhhhhcc
Q 047371          183 GILSEQLPRIINRYSEFLEDI  203 (222)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~  203 (222)
                      |.+....+++.... +.+...
T Consensus       310 CnP~tlaRDl~~L~-~~y~~~  329 (352)
T PF05958_consen  310 CNPATLARDLKILK-EGYKLE  329 (352)
T ss_dssp             S-HHHHHHHHHHHH-CCEEEE
T ss_pred             CCHHHHHHHHHHHh-hcCEEE
Confidence            99998899997654 444333

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=5e-11  Score=93.36  Aligned_cols=108  Identities=26%  Similarity=0.391  Sum_probs=80.4

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .|++|+|+|||+|.+++-++-.|...|+|+|+++++++.+++|+...+   .++.+...|...+                
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~----------------  105 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDF----------------  105 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhc----------------
Confidence            478899999999999999988998999999999999999999998733   4789999888665                


Q ss_pred             cccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          138 SHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                               ..++|.+++|||+...     ..++..+.+.-   -.+|.  +......++...+..
T Consensus       106 ---------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s---~vVYs--iH~a~~~~f~~~~~~  157 (198)
T COG2263         106 ---------RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS---DVVYS--IHKAGSRDFVEKFAA  157 (198)
T ss_pred             ---------CCccceEEECCCCccccccCCHHHHHHHHHhh---heEEE--eeccccHHHHHHHHH
Confidence                     5678999999999653     23555555433   23333  333334444444444

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.27  E-value=9.2e-11  Score=95.30  Aligned_cols=117  Identities=15%  Similarity=0.132  Sum_probs=81.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-------------CCceeEEecCCccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-------------PKKIKLHLVPDRTFTA  123 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~v~~~~~~~~~~~~  123 (222)
                      +++.+|||+|||.|..+..+++.| .+|+|+|+|+.+++.+.+..   ++.             ..++++...|...+..
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G-~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQG-HRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            467899999999999999999987 47999999999999864321   211             1256677776654421


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC-----------CC
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL-----------SE  187 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~-----------~~  187 (222)
                                           ...++||.|+....+++     ...+++.+.++|||||.+++.++.           .-
T Consensus       109 ---------------------~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~  167 (213)
T TIGR03840       109 ---------------------ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSV  167 (213)
T ss_pred             ---------------------ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCC
Confidence                                 01356888887655444     345899999999999976653221           23


Q ss_pred             cHHHHHHHHHh
Q 047371          188 QLPRIINRYSE  198 (222)
Q Consensus       188 ~~~~~~~~~~~  198 (222)
                      +..++.+.+..
T Consensus       168 ~~~eL~~~f~~  178 (213)
T TIGR03840       168 SPAEVEALYGG  178 (213)
T ss_pred             CHHHHHHHhcC
Confidence            44566666654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.26  E-value=7.5e-11  Score=93.06  Aligned_cols=104  Identities=18%  Similarity=0.199  Sum_probs=77.0

Q ss_pred             HHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        50 ~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      +.+.+.++||.+|||+|||.|.+...|.+.......|+|++++.+..+.++    |+     .++..|.+.-       +
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----Gv-----~Viq~Dld~g-------L   68 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----GV-----SVIQGDLDEG-------L   68 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----CC-----CEEECCHHHh-------H
Confidence            445566889999999999999999999887778999999999988877653    43     4777766431       1


Q ss_pred             ccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          130 DGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ...             ++++||+|+++..+..+...-.-+..+|+-|...+++
T Consensus        69 ~~f-------------~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVs  108 (193)
T PF07021_consen   69 ADF-------------PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVS  108 (193)
T ss_pred             hhC-------------CCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEE
Confidence            111             7899999999988877655444444455666666664

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.26  E-value=9.2e-11  Score=100.71  Aligned_cols=145  Identities=19%  Similarity=0.238  Sum_probs=113.2

Q ss_pred             CCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHH
Q 047371           18 WSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSA   97 (222)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a   97 (222)
                      .+|....+.+.|.++++..|-+....+.+.   -+.+.+.+|.+|+|+.||.|.+++.+|+.+...|+++|+||.+++.+
T Consensus       151 teTihrE~G~~f~vD~~Kv~Fsprl~~ER~---Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L  227 (341)
T COG2520         151 TETIHRENGCRFKVDVAKVYFSPRLSTERA---RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYL  227 (341)
T ss_pred             ceEEEecCCEEEEEchHHeEECCCchHHHH---HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHH
Confidence            456667778999999997653333333332   22344668999999999999999999999877799999999999999


Q ss_pred             HHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCe
Q 047371           98 HQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGA  177 (222)
Q Consensus        98 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG  177 (222)
                      ++|++.|+++ ..+....+|...+..                      ..+.+|-|+++.+.. ..+++..+.+.+++||
T Consensus       228 ~eNi~LN~v~-~~v~~i~gD~rev~~----------------------~~~~aDrIim~~p~~-a~~fl~~A~~~~k~~g  283 (341)
T COG2520         228 KENIRLNKVE-GRVEPILGDAREVAP----------------------ELGVADRIIMGLPKS-AHEFLPLALELLKDGG  283 (341)
T ss_pred             HHHHHhcCcc-ceeeEEeccHHHhhh----------------------ccccCCEEEeCCCCc-chhhHHHHHHHhhcCc
Confidence            9999999997 358888888766532                      237899999988764 4578888999999999


Q ss_pred             EEEEecCCCCcH
Q 047371          178 VVGISGILSEQL  189 (222)
Q Consensus       178 ~l~~~~~~~~~~  189 (222)
                      .+-+..+..+..
T Consensus       284 ~iHyy~~~~e~~  295 (341)
T COG2520         284 IIHYYEFVPEDD  295 (341)
T ss_pred             EEEEEeccchhh
Confidence            998876655444

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.25  E-value=1.5e-10  Score=99.41  Aligned_cols=109  Identities=17%  Similarity=0.250  Sum_probs=81.4

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      +...+++.. ++++++|||+|||+|.++..+++..  ..+|+++|+++.+++.|++++..+++.  ++.+...|..... 
T Consensus        68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~--nV~~i~gD~~~~~-  144 (322)
T PRK13943         68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE--NVIFVCGDGYYGV-  144 (322)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCChhhcc-
Confidence            333443333 5678999999999999999988752  247999999999999999999888874  6777777653221 


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                           ....+||+|++.....   .....+.+.|+|||.+++.
T Consensus       145 ---------------------~~~~~fD~Ii~~~g~~---~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        145 ---------------------PEFAPYDVIFVTVGVD---EVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ---------------------cccCCccEEEECCchH---HhHHHHHHhcCCCCEEEEE
Confidence                                 1345799999876543   3445678899999998874

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.25  E-value=1.6e-10  Score=98.79  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=81.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|.+++.+++. +..+++++|. +.+++.+++++...++. +++++...|....             
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~-------------  211 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKE-------------  211 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCC-------------
Confidence            356789999999999999988875 5678999998 78999999999888876 4788888876432             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 +...+|++++...++..     ..+++++++.|+|||.+++.++
T Consensus       212 -----------~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       212 -----------SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             -----------CCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                       12236998876655532     3589999999999999998754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06202 hypothetical protein; Provisional

Probab=99.25  E-value=5.8e-11  Score=97.59  Aligned_cols=99  Identities=25%  Similarity=0.373  Sum_probs=72.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh----C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF----G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      .++.+|||+|||+|.++..+++.    + ..+++|+|+++.+++.|+++....+     +.+...+.+.+..        
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~~l~~--------  125 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG-----VTFRQAVSDELVA--------  125 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC-----CeEEEEecccccc--------
Confidence            35679999999999998887752    2 3589999999999999988754333     3344444433311        


Q ss_pred             chhccccccccCCCCCCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEecC
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                    ++++||+|+++..+++..     .+++++.+.++  |.+++..+
T Consensus       126 --------------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl  167 (232)
T PRK06202        126 --------------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL  167 (232)
T ss_pred             --------------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence                          457899999999888743     47899999988  45555443

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.24  E-value=2.2e-10  Score=90.25  Aligned_cols=125  Identities=23%  Similarity=0.263  Sum_probs=95.1

Q ss_pred             cCCcchhHHHHHHHHhhhc----CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE
Q 047371           39 TGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH  114 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~----~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  114 (222)
                      .+-.|++..+.+.+=..+.    .|.++||+.+|+|.+++.+++.+...++.+|.+..++...++|+...++. .+..+.
T Consensus        20 ~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~~   98 (187)
T COG0742          20 PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARVL   98 (187)
T ss_pred             CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEEE
Confidence            3467888888887765543    47899999999999999999999999999999999999999999988866 467777


Q ss_pred             ecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HH--HHHHH--HHHcccCCeEEEEec
Q 047371          115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LP--QLADH--IVSYAKPGAVVGISG  183 (222)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~--~~l~~--~~~~LkpgG~l~~~~  183 (222)
                      ..|+..+.                   .+....++||+|+.+||++.  ..  ..+..  -..+|+|+|.+++..
T Consensus        99 ~~da~~~L-------------------~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~  154 (187)
T COG0742          99 RNDALRAL-------------------KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH  154 (187)
T ss_pred             eecHHHHH-------------------HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence            77665321                   11112335999999999983  21  12222  457799999999963

>PTZ00146 fibrillarin; Provisional

Probab=99.24  E-value=7.8e-10  Score=93.18  Aligned_cols=104  Identities=18%  Similarity=0.110  Sum_probs=73.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++|||+|||+|.++..++..  +...|+++|+++.+++.....+...    .++.+...|+.....      ... 
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~------y~~-  198 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQK------YRM-  198 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhh------hhc-
Confidence            678999999999999999999986  2468999999988665544433221    256676666532100      000 


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                  ..+.||+|+++....+ ...++.++.+.|||||++++.
T Consensus       199 ------------~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        199 ------------LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             ------------ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence                        2347999999775433 334567899999999999983

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.23  E-value=2.9e-10  Score=92.59  Aligned_cols=103  Identities=24%  Similarity=0.336  Sum_probs=80.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .+.+|||+|||+|.++..+++.+ .+++++|.++.+++.++.++...+..  ++.+...+......              
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~--------------  107 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLL--KIEYRCTSVEDLAE--------------  107 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhc--------------
Confidence            37799999999999999888765 46999999999999999988766643  46666665543321              


Q ss_pred             cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             ...++||+|+++..+++   ...+++.+.+.|+|||.+++...
T Consensus       108 -------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       108 -------KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             -------CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence                   02368999999876654   56689999999999999988654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00417 speE spermidine synthase

Probab=99.23  E-value=5.6e-10  Score=93.92  Aligned_cols=141  Identities=16%  Similarity=0.156  Sum_probs=95.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcC--CCCCceeEEecCCcccccccccccccch
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNN--IGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.+++||++|||+|.++..+++.+ ..+++++|+++.+++.|++.+...+  +...++++...|+..+..          
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~----------  140 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA----------  140 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH----------
Confidence            456799999999999998887764 5789999999999999999875432  222466666665533210          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccc--c-----HHHHHHHHHHcccCCeEEEEecC-CC---CcHHHHHHHHHhhhhc
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLN--P-----LPQLADHIVSYAKPGAVVGISGI-LS---EQLPRIINRYSEFLED  202 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~--~-----~~~~l~~~~~~LkpgG~l~~~~~-~~---~~~~~~~~~~~~~~~~  202 (222)
                               .  ..++||+|+++.+..  .     ..++++.+.+.|+|||.+++... ..   .....+.+.+...|..
T Consensus       141 ---------~--~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~  209 (270)
T TIGR00417       141 ---------D--TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPI  209 (270)
T ss_pred             ---------h--CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCC
Confidence                     0  246899999976521  1     35678999999999999998522 11   2223333445555544


Q ss_pred             cee-------cccCCceEeeccc
Q 047371          203 ILV-------SEKDDWRCVSGTK  218 (222)
Q Consensus       203 ~~~-------~~~~~w~~~~~~k  218 (222)
                      ...       ...+.|.-+.+.|
T Consensus       210 v~~~~~~vp~~~~g~~~~~~as~  232 (270)
T TIGR00417       210 TEYYTANIPTYPSGLWTFTIGSK  232 (270)
T ss_pred             eEEEEEEcCccccchhEEEEEEC
Confidence            432       2347798887776

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02476 O-methyltransferase

Probab=99.23  E-value=1.8e-10  Score=96.76  Aligned_cols=109  Identities=14%  Similarity=0.200  Sum_probs=88.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++|||+|+++|..++.++..  +.++++++|.++..++.|++++...|+. +++++..+++.....       .+  
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~-------~l--  186 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAESLK-------SM--  186 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-------HH--
Confidence            35889999999999999999874  3468999999999999999999999997 689999888754311       00  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             ......++||+|+.+..-..+.++++.+.++|+|||.+++.
T Consensus       187 -------~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        187 -------IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             -------HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence                   00002468999999988878899999999999999999984

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.23  E-value=9e-11  Score=106.11  Aligned_cols=100  Identities=22%  Similarity=0.272  Sum_probs=77.8

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++...   +.. .++.+...+......       +.     
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~~~-~~i~~~~~d~~~~~~-------~~-----   99 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---GHY-KNVKFMCADVTSPDL-------NI-----   99 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---ccC-CceEEEEeccccccc-------CC-----
Confidence            56799999999999999998874 68999999999998876532   211 367777777642110       01     


Q ss_pred             cccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~  182 (222)
                              +.++||+|+++.+++++     ..+++++.+.|||||++++.
T Consensus       100 --------~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        100 --------SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             --------CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                    56789999999888763     46899999999999999885

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.22  E-value=4.6e-10  Score=88.86  Aligned_cols=104  Identities=23%  Similarity=0.314  Sum_probs=75.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCC---------EEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAA---------MFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~---------~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      .+++..+||..||+|.+.+..+.. ...         +++|.|+++.+++.|+.|+...++. ..+.+...|...+..  
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~--  102 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPL--  102 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGG--
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhccc--
Confidence            567899999999999999987754 222         3899999999999999999988886 467888777766532  


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEe
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                          ..+.+|+|++|||+..           +..+++.+.+.+++..++++.
T Consensus       103 --------------------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  103 --------------------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             --------------------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             --------------------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence                                5678999999999864           456789999999995444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.22  E-value=2e-10  Score=94.22  Aligned_cols=113  Identities=26%  Similarity=0.349  Sum_probs=83.4

Q ss_pred             HHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371           47 LCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        47 ~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (222)
                      ...+++...  ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....+.   .+.+...+...... 
T Consensus        35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~-  109 (233)
T PRK05134         35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAA-  109 (233)
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhh-
Confidence            334444443  2357899999999999999888775 6899999999999999988766554   34555554433210 


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                          ...++||+|++...+++   ...+++.+.+.|+|||.+++...
T Consensus       110 --------------------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        110 --------------------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             --------------------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence                                03468999999776654   45688999999999999998754

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.22  E-value=1.6e-10  Score=98.69  Aligned_cols=104  Identities=23%  Similarity=0.297  Sum_probs=86.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|+.|||..||||.+++.+.-.| .+++|+|++..|+..|+.|+...++.  ...+... |+..++.           
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~lpl-----------  260 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIE--DYPVLKVLDATNLPL-----------  260 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcC--ceeEEEecccccCCC-----------
Confidence            6789999999999999999988887 68999999999999999999988865  3333333 6655532           


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 +.+++|.|+++||+.-            +.++++.+++.||+||++++...
T Consensus       261 -----------~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         261 -----------RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             -----------CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence                       5557999999999753            55689999999999999998644

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.22  E-value=2.7e-10  Score=92.31  Aligned_cols=105  Identities=16%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccccccccccch
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTASMNERVDGVV  133 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~  133 (222)
                      .++++|||+|++.|+.+++++.. + ..+++.+|.++++.+.|++++...++. +++..... +......       .. 
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~gdal~~l~-------~~-  128 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLGGDALDVLS-------RL-  128 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEecCcHHHHHH-------hc-
Confidence            37899999999999999998864 4 679999999999999999999999997 45777663 4432210       01 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                  ..++||+||.+..-..+.++++.+.++|+|||.+++.
T Consensus       129 ------------~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         129 ------------LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             ------------cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence                        4689999999887777899999999999999999994

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=1.3e-10  Score=92.19  Aligned_cols=109  Identities=13%  Similarity=0.133  Sum_probs=83.2

Q ss_pred             cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCcee-EEecCCcccccccccccccchhccccc
Q 047371           61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK-LHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      .+|++|||+|..=...--.+..+|+++|.++.|-+.|.+.+..+.-  .++. |+..+.++++        .+       
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l~--------~l-------  141 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADGENLP--------QL-------  141 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeechhcCc--------cc-------
Confidence            5899999999765544434668999999999999999888876532  3666 7888776653        11       


Q ss_pred             cccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          140 EIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                            +++++|+|++...+..   ..+.++++.++|+|||++++.+....+-..+
T Consensus       142 ------~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~  191 (252)
T KOG4300|consen  142 ------ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW  191 (252)
T ss_pred             ------ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHH
Confidence                  6889999999877644   5678999999999999999976654443333

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.21  E-value=1.6e-10  Score=92.74  Aligned_cols=118  Identities=19%  Similarity=0.272  Sum_probs=88.8

Q ss_pred             CcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           60 ELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      ..+||+|||.|.+.+.+|.. +..+++|+|+....+..|...+...++.  |+.+..+++..+.                
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~--Nv~~~~~da~~~l----------------   80 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK--NVRFLRGDARELL----------------   80 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS--SEEEEES-CTTHH----------------
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc--ceEEEEccHHHHH----------------
Confidence            38999999999999988864 7789999999999999999999888876  9999999886641                


Q ss_pred             ccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          139 HEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                         ..+.+++++|.|..+.|-.+           ...+++.+.+.|+|||.+.+.+-...-.+...+.+..
T Consensus        81 ---~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   81 ---RRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             ---HHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             ---hhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence               11225688999999876433           3568999999999999999976555555555555555

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.20  E-value=3.8e-10  Score=78.97  Aligned_cols=99  Identities=26%  Similarity=0.390  Sum_probs=76.3

Q ss_pred             cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371           61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE  140 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (222)
                      +++|+|||+|.++..+++....+++++|.++..++.+++.......  .++.+...+......                 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------------   61 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPP-----------------   61 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhcc-----------------
Confidence            4899999999999888875567999999999999999864333322  367777766544310                 


Q ss_pred             ccCCCCCCCeeEEEecccccc----HHHHHHHHHHcccCCeEEEEe
Q 047371          141 IRGISETEEYDVVIANILLNP----LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       141 ~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~  182 (222)
                          ...+++|+++++.++++    ...+++.+.+.++|+|.+++.
T Consensus        62 ----~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          62 ----EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ----ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence                03567999999998875    356789999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03438 probable methyltransferase

Probab=99.20  E-value=6.9e-10  Score=94.79  Aligned_cols=121  Identities=12%  Similarity=0.034  Sum_probs=79.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc-ccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF-TASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~  132 (222)
                      ++++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.|++++.... ...++....+|.... ..     ..  
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~~~-----~~--  132 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPLAL-----PP--  132 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchhhh-----hc--
Confidence            4567899999999999999888753  4689999999999999998876432 112455666665432 11     00  


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHH
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINR  195 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  195 (222)
                                +. ..+...++++...+++     ...+++.+++.|+|||.+++.-........+...
T Consensus       133 ----------~~-~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~a  189 (301)
T TIGR03438       133 ----------EP-AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA  189 (301)
T ss_pred             ----------cc-ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHh
Confidence                      00 1123345554444443     3458999999999999999854444444444333

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.19  E-value=8.6e-10  Score=94.55  Aligned_cols=110  Identities=24%  Similarity=0.207  Sum_probs=73.5

Q ss_pred             HHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC---CCceeEEecCCccc
Q 047371           46 KLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG---PKKIKLHLVPDRTF  121 (222)
Q Consensus        46 ~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~~~~~~  121 (222)
                      +.+..++... ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++.......   ..++.+...|... 
T Consensus       131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-  208 (315)
T PLN02585        131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-  208 (315)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-
Confidence            3344444332 1257899999999999999999875 68999999999999999987654211   1245565554322 


Q ss_pred             ccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEec
Q 047371          122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~~  183 (222)
                                              ..++||+|+|...++|+.     .+++.+.+ +.++|. +++.
T Consensus       209 ------------------------l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~  249 (315)
T PLN02585        209 ------------------------LSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF  249 (315)
T ss_pred             ------------------------cCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence                                    246799999987765542     24555554 455555 4443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.19  E-value=4.5e-10  Score=91.75  Aligned_cols=106  Identities=24%  Similarity=0.305  Sum_probs=76.5

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      .+..++... ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+.. .++.+...+...     
T Consensus        51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~-----  123 (230)
T PRK07580         51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLES-----  123 (230)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCchh-----
Confidence            344444331 2467899999999999999998875 56999999999999999988776653 367777766321     


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEE
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVV  179 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l  179 (222)
                                          ..++||+|++..++++     ...+++.+.+.+++++.+
T Consensus       124 --------------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580        124 --------------------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             --------------------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence                                3567999999877644     234677777766544443

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.17  E-value=4.9e-10  Score=98.51  Aligned_cols=99  Identities=23%  Similarity=0.296  Sum_probs=80.4

Q ss_pred             CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|+..+++.  ++.+...|+..+..              
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~--~~~v~~~Da~~~l~--------------  121 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE--NEKVFNKDANALLH--------------  121 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEhhhHHHHHh--------------
Confidence            468999999999999998764 5568999999999999999999998875  56677766644310              


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              ..++||+|+++|+ .....+++.+.+.+++||.++++
T Consensus       122 --------~~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        122 --------EERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --------hcCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence                    1356999999986 44567888888889999999996

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.17  E-value=1.7e-10  Score=92.29  Aligned_cols=95  Identities=18%  Similarity=0.198  Sum_probs=66.3

Q ss_pred             HHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        51 ~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      .+...++++.+|||+|||+|.++..+++.....++|+|+++.+++.++..         ++.+...+.....       .
T Consensus         6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l-------~   69 (194)
T TIGR02081         6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGL-------E   69 (194)
T ss_pred             HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcc-------c
Confidence            34445667889999999999999888765556789999999999888642         2345555443210       0


Q ss_pred             cchhccccccccCCCCCCCeeEEEeccccccHHH---HHHHHHHccc
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ---LADHIVSYAK  174 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~---~l~~~~~~Lk  174 (222)
                      +.             ++++||+|+++.+++++.+   +++++.+.++
T Consensus        70 ~~-------------~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        70 AF-------------PDKSFDYVILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             cc-------------CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence            01             4678999999998877544   5666665544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.17  E-value=7.4e-10  Score=99.54  Aligned_cols=119  Identities=16%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++|.+|||+|||+|.-+.+++..  +.+.++++|+++..++..++++.+.|+.  ++.+...|...+..        . 
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--nv~v~~~D~~~~~~--------~-  179 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS--NVALTHFDGRVFGA--------A-  179 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCchhhhhh--------h-
Confidence            468999999999999999988874  3468999999999999999999999986  67777776654310        0 


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC--CC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI--LS  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~--~~  186 (222)
                                  ..+.||.|+.+.|+..                         ..+++..+.++|||||+++.++.  ..
T Consensus       180 ------------~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~  247 (470)
T PRK11933        180 ------------LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR  247 (470)
T ss_pred             ------------chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence                        2356999999988753                         24579999999999999988744  33


Q ss_pred             CcHHHHHHHHH
Q 047371          187 EQLPRIINRYS  197 (222)
Q Consensus       187 ~~~~~~~~~~~  197 (222)
                      ++.+++++.+.
T Consensus       248 eENE~vV~~~L  258 (470)
T PRK11933        248 EENQAVCLWLK  258 (470)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.15  E-value=9.5e-10  Score=86.58  Aligned_cols=144  Identities=22%  Similarity=0.272  Sum_probs=83.3

Q ss_pred             ccccCCcchhHHHHHHHHhh--------hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCC
Q 047371           36 AFGTGEHATTKLCLLLLQSL--------IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNI  106 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--------~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~  106 (222)
                      ..+.-..+....+..+|...        ..++.+|||+|||+|..++.++.. +..+|+.+|.++ .++..+.|+..++.
T Consensus        15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~   93 (173)
T PF10294_consen   15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS   93 (173)
T ss_dssp             --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--
T ss_pred             CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc
Confidence            33444455666666666552        346889999999999999999988 678999999999 99999999988761


Q ss_pred             -CCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371          107 -GPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       107 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (222)
                       ...++.+...+-....     . ..            ....++||+|++...++.   ...+++.+.++++++|.+++.
T Consensus        94 ~~~~~v~v~~L~Wg~~~-----~-~~------------~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~  155 (173)
T PF10294_consen   94 LLDGRVSVRPLDWGDEL-----D-SD------------LLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA  155 (173)
T ss_dssp             ------EEEE--TTS-H-----H-HH------------HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred             cccccccCcEEEecCcc-----c-cc------------ccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence             1235665555432210     0 00            013468999998766554   567899999999999997775


Q ss_pred             c-CCCCcHHHHHHHHHh
Q 047371          183 G-ILSEQLPRIINRYSE  198 (222)
Q Consensus       183 ~-~~~~~~~~~~~~~~~  198 (222)
                      . .......++.+.+++
T Consensus       156 ~~~R~~~~~~F~~~~~k  172 (173)
T PF10294_consen  156 YKRRRKSEQEFFDRLKK  172 (173)
T ss_dssp             EE-S-TGGCHHHHHH--
T ss_pred             eCEecHHHHHHHHHhhh
Confidence            3 344455556555543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.15  E-value=9.8e-10  Score=89.60  Aligned_cols=119  Identities=13%  Similarity=0.107  Sum_probs=81.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-------------CCceeEEecCCcccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-------------PKKIKLHLVPDRTFT  122 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~v~~~~~~~~~~~  122 (222)
                      .+++.+|||+|||.|..+..|++.| .+|+|+|+|+.+++.+..   .+++.             ..++++...|...+.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence            3467899999999999999999987 589999999999998743   22221             135666666654432


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC--C---------C
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI--L---------S  186 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~--~---------~  186 (222)
                      .                     .....||.|+....+++     ...+++.+.++|||||.+++.+.  .         .
T Consensus       111 ~---------------------~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~  169 (218)
T PRK13255        111 A---------------------ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFS  169 (218)
T ss_pred             c---------------------ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCC
Confidence            1                     02357899996544433     35689999999999986444111  1         2


Q ss_pred             CcHHHHHHHHHhh
Q 047371          187 EQLPRIINRYSEF  199 (222)
Q Consensus       187 ~~~~~~~~~~~~~  199 (222)
                      -+..++.+.+...
T Consensus       170 ~~~~el~~~~~~~  182 (218)
T PRK13255        170 VSDEEVEALYAGC  182 (218)
T ss_pred             CCHHHHHHHhcCC
Confidence            3456777777653

>PRK03612 spermidine synthase; Provisional

Probab=99.15  E-value=1.1e-09  Score=100.00  Aligned_cols=142  Identities=15%  Similarity=0.196  Sum_probs=95.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHh-----cCCCCCceeEEecCCccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAAL-----NNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      .+++++|||+|||+|..+..+++.+. .+++++|+++.+++.++++...     ..++.+++++...|...+..      
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~------  368 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR------  368 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH------
Confidence            35678999999999999998888765 7999999999999999984321     12333578888887754311      


Q ss_pred             ccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCeEEEEecC----CCCcHHHHHHHHH
Q 047371          130 DGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGAVVGISGI----LSEQLPRIINRYS  197 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~~~~~  197 (222)
                                   .  ..++||+|+++.+...        ..++++.+.+.|||||.+++...    ..+...++.+.++
T Consensus       369 -------------~--~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~  433 (521)
T PRK03612        369 -------------K--LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLE  433 (521)
T ss_pred             -------------h--CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHH
Confidence                         0  2468999999875422        23588999999999999998422    1223344555555


Q ss_pred             hh-hhcc----eecccCCceEeeccc
Q 047371          198 EF-LEDI----LVSEKDDWRCVSGTK  218 (222)
Q Consensus       198 ~~-~~~~----~~~~~~~w~~~~~~k  218 (222)
                      +. |...    .+..-+.|.-+.+.|
T Consensus       434 ~~gf~v~~~~~~vps~g~w~f~~as~  459 (521)
T PRK03612        434 AAGLATTPYHVNVPSFGEWGFVLAGA  459 (521)
T ss_pred             HcCCEEEEEEeCCCCcchhHHHeeeC
Confidence            54 4110    112236776555544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.15  E-value=8.7e-10  Score=92.16  Aligned_cols=109  Identities=12%  Similarity=0.188  Sum_probs=77.8

Q ss_pred             CCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           33 PGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        33 ~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      |...+|+..-.....+..++... ..++++|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++..  .  .++
T Consensus         3 ~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~--~~v   77 (258)
T PRK14896          3 MNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A--GNV   77 (258)
T ss_pred             CCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C--CCE
Confidence            44455554433344444444333 4578899999999999999999884 6899999999999999987643  2  378


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHH
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIV  170 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~  170 (222)
                      ++...|+..+                        +...+|.|++|+|++....++..+.
T Consensus        78 ~ii~~D~~~~------------------------~~~~~d~Vv~NlPy~i~s~~~~~l~  112 (258)
T PRK14896         78 EIIEGDALKV------------------------DLPEFNKVVSNLPYQISSPITFKLL  112 (258)
T ss_pred             EEEEeccccC------------------------CchhceEEEEcCCcccCcHHHHHHH
Confidence            8888887654                        2335899999999986544444443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.14  E-value=4.8e-10  Score=96.68  Aligned_cols=109  Identities=20%  Similarity=0.143  Sum_probs=72.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC--CCC------CceeEEecCCccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN--IGP------KKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~------~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      ++.+|||+|||-|.-+..+...+..+++|+|++...++.|+++.....  ...      -...+...|...-        
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~--------  133 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE--------  133 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS--------
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc--------
Confidence            788999999999887776667778899999999999999999883211  000      0122333332111        


Q ss_pred             ccchhccccccccCCCC--CCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEecC
Q 047371          130 DGVVEYLSSHEIRGISE--TEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~--~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                .+....+  ..+||+|-|...+|.       ...++.++.+.|+|||+++.+++
T Consensus       134 ----------~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  134 ----------SLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             ----------HHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ----------hhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence                      1111112  358999999998886       35689999999999999998754

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.13  E-value=7e-10  Score=97.11  Aligned_cols=128  Identities=16%  Similarity=0.245  Sum_probs=98.9

Q ss_pred             eEEeCCCcccccCCcchhHHHHHHHHhhhcC--CCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           28 NIILNPGLAFGTGEHATTKLCLLLLQSLIKG--GELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        28 ~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~--~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ..+.||.+.|   ++..+-++...+....++  +.+|||+.||+|..++.++..  +..+|+++|+++.+++.+++|+..
T Consensus        15 ~vFYNP~~~~---nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~   91 (374)
T TIGR00308        15 TVFYNPRMQF---NRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY   91 (374)
T ss_pred             CcccCchhhc---cccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            4688888887   555555555544433222  258999999999999998876  568999999999999999999998


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +++.  ++.+...|+..+..                   .  ...+||+|..+| +.....+++.+.+.++++|.++++
T Consensus        92 N~~~--~~~v~~~Da~~~l~-------------------~--~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308        92 NSVE--NIEVPNEDAANVLR-------------------Y--RNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             hCCC--cEEEEchhHHHHHH-------------------H--hCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence            8875  67777776654421                   0  235799999998 665568999999999999999995

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.12  E-value=1.6e-10  Score=93.60  Aligned_cols=98  Identities=17%  Similarity=0.260  Sum_probs=69.9

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      ..++|+|||+|..++.++.+ +.+|+|+|+|++||+.|++...        ++.......     +.+  ++.++.    
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~--------~~y~~t~~~-----ms~--~~~v~L----   94 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPP--------VTYCHTPST-----MSS--DEMVDL----   94 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCC--------cccccCCcc-----ccc--cccccc----
Confidence            38999999999888888887 5799999999999999987543        222221110     000  011111    


Q ss_pred             cccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEE
Q 047371          140 EIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~  181 (222)
                          ...++++|+|++...+|+  +..+.+.+.|.||+.|-++.
T Consensus        95 ----~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen   95 ----LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             ----cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence                115789999999998887  67899999999999984443

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.12  E-value=8.4e-10  Score=93.81  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=83.9

Q ss_pred             eCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 047371           31 LNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK  109 (222)
Q Consensus        31 ~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~  109 (222)
                      +.|...+|+..-.....+..++... +.++++|||+|||+|.++..+++.. .+++|+|+++.+++.+++++...+.. .
T Consensus         8 ~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~-~   85 (294)
T PTZ00338          8 MVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLA-S   85 (294)
T ss_pred             cCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCC-C
Confidence            3455666665444444444444433 4578899999999999999988874 68999999999999999988765543 4


Q ss_pred             ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHH
Q 047371          110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIV  170 (222)
Q Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~  170 (222)
                      ++++...|+...                        ....||+|++|+|++....++-.+.
T Consensus        86 ~v~ii~~Dal~~------------------------~~~~~d~VvaNlPY~Istpil~~ll  122 (294)
T PTZ00338         86 KLEVIEGDALKT------------------------EFPYFDVCVANVPYQISSPLVFKLL  122 (294)
T ss_pred             cEEEEECCHhhh------------------------cccccCEEEecCCcccCcHHHHHHH
Confidence            788988887554                        2346899999999987655544444

>PRK01581 speE spermidine synthase; Validated

Probab=99.11  E-value=2.2e-09  Score=92.84  Aligned_cols=134  Identities=17%  Similarity=0.239  Sum_probs=90.6

Q ss_pred             eEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHH----
Q 047371           28 NIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNA----  101 (222)
Q Consensus        28 ~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~----  101 (222)
                      .+.++-...+...- +.+...+..........+.+||++|||.|..+..+.+.+ ..+|+++|+++.+++.|+...    
T Consensus       119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~  198 (374)
T PRK01581        119 RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS  198 (374)
T ss_pred             EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence            35555555553322 223333333222234567899999999999888888764 579999999999999999621    


Q ss_pred             -HhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--c------HHHHHHHHHHc
Q 047371          102 -ALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--P------LPQLADHIVSY  172 (222)
Q Consensus       102 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~------~~~~l~~~~~~  172 (222)
                       ....+...++++...|+..+..                     ...++||+|+++.+-.  .      ..++++.+.+.
T Consensus       199 ~~~~~~~DpRV~vvi~Da~~fL~---------------------~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~  257 (374)
T PRK01581        199 LNKSAFFDNRVNVHVCDAKEFLS---------------------SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATF  257 (374)
T ss_pred             hccccCCCCceEEEECcHHHHHH---------------------hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHh
Confidence             1123334688888888765421                     0346799999985421  1      25689999999


Q ss_pred             ccCCeEEEEe
Q 047371          173 AKPGAVVGIS  182 (222)
Q Consensus       173 LkpgG~l~~~  182 (222)
                      |+|||++++.
T Consensus       258 LkPgGV~V~Q  267 (374)
T PRK01581        258 LTEDGAFVCQ  267 (374)
T ss_pred             cCCCcEEEEe
Confidence            9999998875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.09  E-value=2e-09  Score=90.62  Aligned_cols=113  Identities=16%  Similarity=0.138  Sum_probs=79.6

Q ss_pred             CCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCc
Q 047371           32 NPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK  110 (222)
Q Consensus        32 ~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~  110 (222)
                      .|...+++........+..+++.. ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++...     .+
T Consensus        15 ~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~-----~~   88 (272)
T PRK00274         15 RAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE-----DN   88 (272)
T ss_pred             CCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc-----Cc
Confidence            455556553333333334444333 4578899999999999999999885 4899999999999999886532     37


Q ss_pred             eeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHc
Q 047371          111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSY  172 (222)
Q Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~  172 (222)
                      +.+...|+..+..                      +.-..+.|++|+|++....++..+...
T Consensus        89 v~~i~~D~~~~~~----------------------~~~~~~~vv~NlPY~iss~ii~~~l~~  128 (272)
T PRK00274         89 LTIIEGDALKVDL----------------------SELQPLKVVANLPYNITTPLLFHLLEE  128 (272)
T ss_pred             eEEEEChhhcCCH----------------------HHcCcceEEEeCCccchHHHHHHHHhc
Confidence            8888888765521                      111158999999998777776666544

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1e-09  Score=97.36  Aligned_cols=155  Identities=19%  Similarity=0.285  Sum_probs=113.5

Q ss_pred             CcceeEEeCCCcccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      +....|+++|+..|.++.+ ....+...+...  ++.++.++|++||+|.+++.+++. ..+|+|+|+++.++..|+.|+
T Consensus       348 l~~ltF~iSp~AFFQ~Nt~-~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA  425 (534)
T KOG2187|consen  348 LLGLTFRISPGAFFQTNTS-AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNA  425 (534)
T ss_pred             cCCeEEEECCchhhccCcH-HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcc
Confidence            3457899999999965444 444455555544  567789999999999999998866 578999999999999999999


Q ss_pred             HhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCee-EEEeccccccHHH-HHHHHHHcccCCeEE
Q 047371          102 ALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYD-VVIANILLNPLPQ-LADHIVSYAKPGAVV  179 (222)
Q Consensus       102 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~v~~~~~~~~~~~-~l~~~~~~LkpgG~l  179 (222)
                      ..++++  |.+|..+.++....+    +           +.+  .-..=+ +++.+++.-.+.. +++.+.+.-.+--.+
T Consensus       426 ~~Ngis--Na~Fi~gqaE~~~~s----l-----------~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv  486 (534)
T KOG2187|consen  426 QINGIS--NATFIVGQAEDLFPS----L-----------LTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV  486 (534)
T ss_pred             hhcCcc--ceeeeecchhhccch----h-----------ccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceE
Confidence            999997  899999876554211    0           011  111234 6677887766554 566666666699899


Q ss_pred             EEecCCCCcHHHHHHHHHhh
Q 047371          180 GISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~  199 (222)
                      |++|......+.+.+.+...
T Consensus       487 yvSCn~~t~ar~v~~lc~~~  506 (534)
T KOG2187|consen  487 YVSCNPHTAARNVIDLCSSP  506 (534)
T ss_pred             EEEcCHHHhhhhHHHhhcCc
Confidence            99988876677777666554

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=5.5e-09  Score=91.11  Aligned_cols=143  Identities=17%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhC---CCEEEEEeCChHHHHHHHHHHHhcCCCCCc
Q 047371           36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFG---AAMFVGVDIDPQVIKSAHQNAALNNIGPKK  110 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~  110 (222)
                      .|..|....+.....+....  .++|.+|||++++.|.-+.++++.-   ...|+++|.++..++..+.++.+.|+.  +
T Consensus       132 ~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--n  209 (355)
T COG0144         132 EFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--N  209 (355)
T ss_pred             hhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--c
Confidence            45555555555555544433  4679999999999999999888752   245799999999999999999999986  6


Q ss_pred             eeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHH
Q 047371          111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQL  165 (222)
Q Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~  165 (222)
                      +.....|...+..                   .+...++||.|+.++|+..                         ..++
T Consensus       210 v~~~~~d~~~~~~-------------------~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~i  270 (355)
T COG0144         210 VIVVNKDARRLAE-------------------LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEI  270 (355)
T ss_pred             eEEEecccccccc-------------------cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHH
Confidence            6666666543310                   0112336999999998753                         2357


Q ss_pred             HHHHHHcccCCeEEEEecC--C-CCcHHHHHHHHHhh
Q 047371          166 ADHIVSYAKPGAVVGISGI--L-SEQLPRIINRYSEF  199 (222)
Q Consensus       166 l~~~~~~LkpgG~l~~~~~--~-~~~~~~~~~~~~~~  199 (222)
                      +..+.+.|||||.+++++.  . .++...+...+++.
T Consensus       271 L~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~  307 (355)
T COG0144         271 LAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH  307 (355)
T ss_pred             HHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence            9999999999999998643  2 34444444555554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.07  E-value=1.8e-09  Score=89.39  Aligned_cols=109  Identities=14%  Similarity=0.173  Sum_probs=87.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +.++|||+|++.|..++.+++.  +.++++++|.++...+.|++++...|+. +++++..+++......+.+        
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~~l~~--------  149 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLDQMIE--------  149 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHHHHHh--------
Confidence            5789999999999999988864  3579999999999999999999999987 6899998887543210000        


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             .-...++||+|+.+.--..+..+++.+.++|+|||.+++.
T Consensus       150 -------~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        150 -------DGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             -------ccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence                   0001368999999887777888999999999999999984

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.07  E-value=3.1e-09  Score=88.53  Aligned_cols=110  Identities=15%  Similarity=0.265  Sum_probs=79.7

Q ss_pred             CCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           33 PGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        33 ~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      |...+|+..-.....+..++... ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.++.+...    ..++
T Consensus         3 ~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~----~~~v   77 (253)
T TIGR00755         3 PRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL----YERL   77 (253)
T ss_pred             CCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc----CCcE
Confidence            44555554444444444555443 4567899999999999999999875 5799999999999999877643    1378


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCee---EEEeccccccHHHHHHHHHH
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYD---VVIANILLNPLPQLADHIVS  171 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D---~v~~~~~~~~~~~~l~~~~~  171 (222)
                      ++...|+..+.                        ...+|   +|++|+|++....++.++..
T Consensus        78 ~v~~~D~~~~~------------------------~~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        78 EVIEGDALKVD------------------------LPDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             EEEECchhcCC------------------------hhHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            88888876542                        12345   99999999877777777765

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.07  E-value=5.4e-09  Score=89.65  Aligned_cols=85  Identities=27%  Similarity=0.373  Sum_probs=62.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeEEec-CCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKLHLV-PDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~  134 (222)
                      ++.++||+|||+|.+...++. .+..+++|+|+++.+++.|++++..+ ++. .++.+... +.....       .++  
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~-------~~i--  183 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAIF-------KGI--  183 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhh-------hcc--
Confidence            357899999999987776664 45579999999999999999999988 676 46766532 221110       000  


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                               ..+.++||+|+||||++.
T Consensus       184 ---------~~~~~~fDlivcNPPf~~  201 (321)
T PRK11727        184 ---------IHKNERFDATLCNPPFHA  201 (321)
T ss_pred             ---------cccCCceEEEEeCCCCcC
Confidence                     014568999999999975

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.06  E-value=7.3e-10  Score=93.20  Aligned_cols=128  Identities=21%  Similarity=0.197  Sum_probs=86.8

Q ss_pred             HHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCC----ceeEEecCCccccccccc
Q 047371           52 LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK----KIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        52 l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~  127 (222)
                      +..+.++++.++|+|||-|.-++.+-+.+...++|+|++...+++|+++.+...-..+    .+.|..+|...-      
T Consensus       111 I~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~------  184 (389)
T KOG1975|consen  111 INLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE------  184 (389)
T ss_pred             HHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh------
Confidence            3444678999999999999988887778888999999999999999998864221111    234544443211      


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                      .+..+++          .++.+||+|-|...+|.       ...++.++.++|||||+++-+ ++.  ...|...+..
T Consensus       185 ~l~d~~e----------~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT-iPd--sd~Ii~rlr~  249 (389)
T KOG1975|consen  185 RLMDLLE----------FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT-IPD--SDVIIKRLRA  249 (389)
T ss_pred             HHHHhcc----------CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe-cCc--HHHHHHHHHh
Confidence            1111111          03444999999888775       344799999999999999875 232  2344444444

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.04  E-value=1.2e-09  Score=91.38  Aligned_cols=150  Identities=15%  Similarity=0.199  Sum_probs=98.4

Q ss_pred             EEeCCCcccccCCcchhHHHHHHHHhhh---c-CCCcEEEEccCCCH----HHHHHHHhC------CCEEEEEeCChHHH
Q 047371           29 IILNPGLAFGTGEHATTKLCLLLLQSLI---K-GGELFLDYGTGSGI----LGIAAIKFG------AAMFVGVDIDPQVI   94 (222)
Q Consensus        29 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~---~-~~~~vLD~G~G~G~----~~~~la~~~------~~~v~gvD~s~~~l   94 (222)
                      +.+|.+..|.-.+ ....+...++..++   + ..-+||.+||++|.    +++.+.+..      .-+|+|+|+|..++
T Consensus        64 ltin~T~FFR~~~-~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L  142 (268)
T COG1352          64 LTINVTEFFRDPE-HFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL  142 (268)
T ss_pred             hhhccchhccCcH-HHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH
Confidence            3455566664322 23333333333222   2 25689999999993    444454432      36899999999999


Q ss_pred             HHHHHHHHh-----cCCCCCcee--EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccc-ccc----H
Q 047371           95 KSAHQNAAL-----NNIGPKKIK--LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANIL-LNP----L  162 (222)
Q Consensus        95 ~~a~~~~~~-----~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~~~----~  162 (222)
                      +.|+.....     .+++.....  |......  .+.+.+.+..+|.++-.|.+.+....+.||+|+|..+ ++.    .
T Consensus       143 ~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~--~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q  220 (268)
T COG1352         143 EKARAGIYPSRELLRGLPPELLRRYFERGGDG--SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQ  220 (268)
T ss_pred             HHHhcCCCChhHhhccCCHHHHhhhEeecCCC--cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHH
Confidence            999876543     333322222  2222222  3356677888999999999987656778999999444 433    4


Q ss_pred             HHHHHHHHHcccCCeEEEE
Q 047371          163 PQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       163 ~~~l~~~~~~LkpgG~l~~  181 (222)
                      .++++.++..|+|||++++
T Consensus       221 ~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         221 ERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             HHHHHHHHHHhCCCCEEEE
Confidence            5689999999999999999

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.03  E-value=1.5e-09  Score=92.49  Aligned_cols=100  Identities=20%  Similarity=0.203  Sum_probs=80.0

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .++.|||+|||+|.+++..|+.|+.+|+|+|-|.- ++.|.+.+..|++. +.+++..+..+....              
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i-a~~a~~iv~~N~~~-~ii~vi~gkvEdi~L--------------  123 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI-ADFARKIVKDNGLE-DVITVIKGKVEDIEL--------------  123 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH-HHHHHHHHHhcCcc-ceEEEeecceEEEec--------------
Confidence            58899999999999999999999999999999874 49999999999987 467887777665532              


Q ss_pred             cccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~  181 (222)
                              |.+++|+|++--+-+.      +..++-.--+.|+|||.++=
T Consensus       124 --------P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  124 --------PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             --------CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence                    6688999998654332      22345666789999998874

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.02  E-value=4.1e-09  Score=84.45  Aligned_cols=108  Identities=25%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccchhccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~  137 (222)
                      ..-|||+|||+|..+..+...+ -..+|+|+|+.|++.|.+.-.. +      .+..+|. +.+++              
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-g------dlil~DMG~Glpf--------------  108 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-G------DLILCDMGEGLPF--------------  108 (270)
T ss_pred             CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-c------CeeeeecCCCCCC--------------
Confidence            5679999999999999887776 5899999999999999874322 1      1333333 22222              


Q ss_pred             cccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS  197 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (222)
                              +.+.||-+|+...+.+              +..++..++.+|++|+..++. +..++..++...++
T Consensus       109 --------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q-fYpen~~q~d~i~~  173 (270)
T KOG1541|consen  109 --------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ-FYPENEAQIDMIMQ  173 (270)
T ss_pred             --------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE-ecccchHHHHHHHH
Confidence                    6889999998766544              234788999999999998885 44444444444333

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.02  E-value=2.4e-09  Score=91.65  Aligned_cols=140  Identities=26%  Similarity=0.362  Sum_probs=88.9

Q ss_pred             CCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHH--------hCCCEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 047371           40 GEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIK--------FGAAMFVGVDIDPQVIKSAHQNAALNNIGPK  109 (222)
Q Consensus        40 ~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~--------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~  109 (222)
                      |.+.|+..+.+++...+  .++.+|+|.+||+|.+...+.+        ....+++|+|+++.++..|+.++...+....
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~  105 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS  105 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence            45667777777776664  3566899999999999887765        2567899999999999999998877766543


Q ss_pred             ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH------------------------HHH
Q 047371          110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------------------------PQL  165 (222)
Q Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------------------------~~~  165 (222)
                      ...+...+......                    ......||+|++|||+...                        ..+
T Consensus       106 ~~~i~~~d~l~~~~--------------------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F  165 (311)
T PF02384_consen  106 NINIIQGDSLENDK--------------------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAF  165 (311)
T ss_dssp             GCEEEES-TTTSHS--------------------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHH
T ss_pred             cccccccccccccc--------------------cccccccccccCCCCccccccccccccccccccccCCCccchhhhh
Confidence            34455555422110                    0025689999999997532                        137


Q ss_pred             HHHHHHcccCCeEEEEe---cCC--CCcHHHHHHHHHhh
Q 047371          166 ADHIVSYAKPGAVVGIS---GIL--SEQLPRIINRYSEF  199 (222)
Q Consensus       166 l~~~~~~LkpgG~l~~~---~~~--~~~~~~~~~~~~~~  199 (222)
                      +..+.+.|++||.+.+.   .+.  ......+++.+.+.
T Consensus       166 i~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~  204 (311)
T PF02384_consen  166 IEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLEN  204 (311)
T ss_dssp             HHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhh
Confidence            89999999999997652   222  22345676666554

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PLN02823 spermine synthase

Probab=99.01  E-value=2e-08  Score=86.80  Aligned_cols=143  Identities=17%  Similarity=0.268  Sum_probs=99.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC--CCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN--IGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+..++||.+|+|.|..+..+.+. +..+++.+|+++.+++.|++.+...+  +...++++...|+..+..         
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---------  171 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---------  171 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---------
Confidence            345679999999999999988875 45789999999999999999875322  334688888888765421         


Q ss_pred             hhccccccccCCCCCCCeeEEEecccc--------cc-HHHHHH-HHHHcccCCeEEEEecCC------CCcHHHHHHHH
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILL--------NP-LPQLAD-HIVSYAKPGAVVGISGIL------SEQLPRIINRY  196 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~--------~~-~~~~l~-~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~  196 (222)
                                  ...++||+|+++.+-        +. ..++++ .+.+.|+|||++++....      ......+.+.+
T Consensus       172 ------------~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl  239 (336)
T PLN02823        172 ------------KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTL  239 (336)
T ss_pred             ------------hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHH
Confidence                        035679999997421        11 346787 899999999998874211      12245566667


Q ss_pred             Hhhhhcceecc------cCCceEeecccC
Q 047371          197 SEFLEDILVSE------KDDWRCVSGTKF  219 (222)
Q Consensus       197 ~~~~~~~~~~~------~~~w~~~~~~k~  219 (222)
                      .+.|..+....      .+.|.-+.+.|.
T Consensus       240 ~~vF~~v~~y~~~vPsf~~~w~f~~aS~~  268 (336)
T PLN02823        240 RQVFKYVVPYTAHVPSFADTWGWVMASDH  268 (336)
T ss_pred             HHhCCCEEEEEeecCCCCCceEEEEEeCC
Confidence            77676554432      245877777653

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.01  E-value=3.5e-09  Score=86.64  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=85.6

Q ss_pred             CcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           60 ELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      ..+||+|||.|.+...+|+ ++...++|+|+....+..|.+.+...++.  |+.+...|+..+.                
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~l----------------  111 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEVL----------------  111 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHHH----------------
Confidence            4799999999999998886 47789999999999999999999999986  7888888876542                


Q ss_pred             ccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecC
Q 047371          139 HEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                         ....++++.|-|..+.|=.+           ...+++.+.+.|||||.+.+.+-
T Consensus       112 ---~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         112 ---DYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             ---HhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence               22335668999999876433           45689999999999999999643

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.96  E-value=3.5e-09  Score=85.51  Aligned_cols=141  Identities=23%  Similarity=0.228  Sum_probs=102.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++.|.+|||.|.|-|+.++..++.|+.+|+.+|.++..++.|+-|--..++....+++..+|...+.       ..+   
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V-------~~~---  201 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV-------KDF---  201 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH-------hcC---
Confidence            4469999999999999999999999889999999999999998876555665456777777764432       222   


Q ss_pred             cccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEe-cCC------CCcHHHHHHHHHhh-hh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGIS-GIL------SEQLPRIINRYSEF-LE  201 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~-~~~------~~~~~~~~~~~~~~-~~  201 (222)
                                ++.+||+|+-+||--.      ..++..+++|+|||||.++-. +.+      .+-...+.+.+.+. |.
T Consensus       202 ----------~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~  271 (287)
T COG2521         202 ----------DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE  271 (287)
T ss_pred             ----------CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence                      6888999999988643      346889999999999999873 222      23334555555554 53


Q ss_pred             cceecccCCceEeeccc
Q 047371          202 DILVSEKDDWRCVSGTK  218 (222)
Q Consensus       202 ~~~~~~~~~w~~~~~~k  218 (222)
                      .  ......|-.+.+.|
T Consensus       272 ~--v~~~~~~~gv~A~k  286 (287)
T COG2521         272 V--VKKVREALGVVAVK  286 (287)
T ss_pred             e--eeeehhccceEEec
Confidence            3  33444555555444

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.96  E-value=5.6e-09  Score=84.75  Aligned_cols=122  Identities=20%  Similarity=0.287  Sum_probs=75.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCcee----------EEecCC--------
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK----------LHLVPD--------  118 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~----------~~~~~~--------  118 (222)
                      .+..+||+||.+|.+++.+++. +...++|+||++..+..|++++....-....+.          +.....        
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            4678999999999999999975 778899999999999999998752110000000          000000        


Q ss_pred             -cccccccccccccchhccccccccCCCCCCCeeEEEecccc---------ccHHHHHHHHHHcccCCeEEEEe
Q 047371          119 -RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL---------NPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       119 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                       ..++.+ ..+..+....+ .+++. +.....||+|+|-...         +.+..++..++++|.|||++++.
T Consensus       138 t~~~p~n-~~f~~~n~vle-~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDN-VWFQKENYVLE-SDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcc-hhcccccEEEe-cchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence             000000 00000011111 11122 2356789999984432         22778999999999999999994

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.92  E-value=5.8e-09  Score=84.62  Aligned_cols=113  Identities=13%  Similarity=0.205  Sum_probs=80.5

Q ss_pred             cEEEEccCCCHHHHHHHHh-CC--CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           61 LFLDYGTGSGILGIAAIKF-GA--AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~~-~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +||++|||.|.....+.+. +.  -.++++|.+|.+++..+++.....   .++.....|....     ....+.     
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~-----~~~~~~-----  140 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSP-----SLKEPP-----  140 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccch-----hccCCC-----
Confidence            7999999999998887763 32  579999999999999998765433   2333333333221     111222     


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN  194 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (222)
                              ..+++|++.+...+..     +...++++.++|||||.+++-+........++-
T Consensus       141 --------~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF  194 (264)
T KOG2361|consen  141 --------EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF  194 (264)
T ss_pred             --------CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence                    5778999988665543     556899999999999999997776666655543

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1e-08  Score=81.55  Aligned_cols=114  Identities=20%  Similarity=0.333  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcC--------CCCCcee
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNN--------IGPKKIK  112 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~v~  112 (222)
                      .-..+++.|...++||.++||+|.|+|+++..++..   +....+|+|.-+..++.+++++...-        ++..++.
T Consensus        68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~  147 (237)
T KOG1661|consen   68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS  147 (237)
T ss_pred             HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence            455567777777899999999999999999988853   23445999999999999999986432        2224455


Q ss_pred             EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ++.+|...-                      +.+..+||.|.+...-   .+..+.+...|++||.+++-
T Consensus       148 ivvGDgr~g----------------------~~e~a~YDaIhvGAaa---~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  148 IVVGDGRKG----------------------YAEQAPYDAIHVGAAA---SELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             EEeCCcccc----------------------CCccCCcceEEEccCc---cccHHHHHHhhccCCeEEEe
Confidence            666655332                      3477899999986433   46678888899999999984

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.91  E-value=1.7e-08  Score=90.37  Aligned_cols=113  Identities=20%  Similarity=0.331  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHhhhcC------CCcEEEEccCCCHHHHHHHHhC-----CCEEEEEeCChHHHHHHHHHHHhcCCCCCcee
Q 047371           44 TTKLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKFG-----AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK  112 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~------~~~vLD~G~G~G~~~~~la~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~  112 (222)
                      +.+++.+++......      +..|+|+|||+|.++...++.+     ..+|+|+|-|+.++...++.+..++.. ++|+
T Consensus       166 Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~  244 (448)
T PF05185_consen  166 YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVT  244 (448)
T ss_dssp             HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEE
T ss_pred             HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEE
Confidence            556667777666443      4689999999999988766543     579999999999888888777778886 5899


Q ss_pred             EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc-----ccHHHHHHHHHHcccCCeEEE
Q 047371          113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL-----NPLPQLADHIVSYAKPGAVVG  180 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-----~~~~~~l~~~~~~LkpgG~l~  180 (222)
                      ++.++.+.+.                       ...++|+|++-..-     +.+.+.+....+.|||+|..+
T Consensus       245 vi~~d~r~v~-----------------------lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  245 VIHGDMREVE-----------------------LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEES-TTTSC-----------------------HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEeCcccCCC-----------------------CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            9999887663                       35589999985432     235677899999999998765

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.89  E-value=2.1e-09  Score=86.16  Aligned_cols=122  Identities=12%  Similarity=0.227  Sum_probs=72.0

Q ss_pred             CCcEEEEccCCCH----HHHHHHHh-----C-CCEEEEEeCChHHHHHHHHHHHh----cCCCCCcee--EEecCCcccc
Q 047371           59 GELFLDYGTGSGI----LGIAAIKF-----G-AAMFVGVDIDPQVIKSAHQNAAL----NNIGPKKIK--LHLVPDRTFT  122 (222)
Q Consensus        59 ~~~vLD~G~G~G~----~~~~la~~-----~-~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~v~--~~~~~~~~~~  122 (222)
                      .-+||.+||++|.    +++.+.+.     + .-+|+|+|+|+.+++.|++....    .++......  |...+...+ 
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~-  110 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY-  110 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT-
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce-
Confidence            4589999999994    44444441     1 24899999999999999885531    121110011  212222222 


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (222)
                       .+.+.+...+.++..|.+......+.||+|+|..++-.     ...+++.+++.|+|||++++.
T Consensus       111 -~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 -RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             -TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             -eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence             35566777888888888885557889999999555433     345899999999999999994

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.87  E-value=1.6e-08  Score=85.70  Aligned_cols=99  Identities=24%  Similarity=0.267  Sum_probs=79.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .++.|||+|||+|.++..++..|.++|+++|-|. |.+.|++.+..+++. +++.++.+..+...               
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~-~rItVI~GKiEdie---------------  239 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLA-DRITVIPGKIEDIE---------------  239 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCcc-ceEEEccCcccccc---------------
Confidence            4778999999999999999999999999999865 899999999888776 68888887776553               


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~  181 (222)
                              -.++.|++++.|+-.-     +-+..-.+++.|||.|..+=
T Consensus       240 --------LPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  240 --------LPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             --------CchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence                    3667999999775432     22234456799999998763

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.86  E-value=3e-08  Score=80.89  Aligned_cols=135  Identities=21%  Similarity=0.246  Sum_probs=87.1

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-cCC---------CCCceeEEec
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-NNI---------GPKKIKLHLV  116 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~---------~~~~v~~~~~  116 (222)
                      +.+++... .+++.+||..|||.|.-...|++.|. +|+|+|+|+.+++.+.+.... ...         ...++++..+
T Consensus        26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g  104 (218)
T PF05724_consen   26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG  104 (218)
T ss_dssp             HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred             HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence            33444443 45677999999999999999999874 899999999999998432211 111         1134566676


Q ss_pred             CCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC-------
Q 047371          117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI-------  184 (222)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~-------  184 (222)
                      |.-.+..                     ...++||+|+-...+..     ..++.+++.++|+|||.+++.++       
T Consensus       105 DfF~l~~---------------------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~  163 (218)
T PF05724_consen  105 DFFELPP---------------------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM  163 (218)
T ss_dssp             -TTTGGG---------------------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS
T ss_pred             ccccCCh---------------------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC
Confidence            6644321                     02347999997544433     45789999999999999443111       


Q ss_pred             ----CCCcHHHHHHHHHhhhhcce
Q 047371          185 ----LSEQLPRIINRYSEFLEDIL  204 (222)
Q Consensus       185 ----~~~~~~~~~~~~~~~~~~~~  204 (222)
                          ..-...++.+.+...|+...
T Consensus       164 ~GPPf~v~~~ev~~l~~~~f~i~~  187 (218)
T PF05724_consen  164 EGPPFSVTEEEVRELFGPGFEIEE  187 (218)
T ss_dssp             SSSS----HHHHHHHHTTTEEEEE
T ss_pred             CCcCCCCCHHHHHHHhcCCcEEEE
Confidence                13455778888877665444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.86  E-value=6.2e-08  Score=79.21  Aligned_cols=124  Identities=10%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc----------CCCCCceeEEecCCcccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN----------NIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .++.+||+.|||.|.-+..|++.|. +|+|+|+|+.+++.+.+.....          .....++++..+|.-.+...  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~--  118 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI--  118 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--
Confidence            4578999999999999999999986 6999999999999986522100          00113566666665433110  


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC----------CCcHHH
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL----------SEQLPR  191 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~----------~~~~~~  191 (222)
                                       -...++||+|.-...+..     ..++++++.++|+|||.+++..+.          .-...+
T Consensus       119 -----------------~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e  181 (226)
T PRK13256        119 -----------------ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAE  181 (226)
T ss_pred             -----------------ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHH
Confidence                             002357999886554433     456899999999999998874331          234466


Q ss_pred             HHHHHHhhh
Q 047371          192 IINRYSEFL  200 (222)
Q Consensus       192 ~~~~~~~~~  200 (222)
                      +.+.+.+.+
T Consensus       182 ~~~lf~~~~  190 (226)
T PRK13256        182 LIKNFSAKI  190 (226)
T ss_pred             HHHhccCCc
Confidence            777776653

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.85  E-value=5.1e-08  Score=84.58  Aligned_cols=105  Identities=28%  Similarity=0.322  Sum_probs=84.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCC---------------------------------C-------EEEEEeCChHHHH
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------A-------MFVGVDIDPQVIK   95 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~---------------------------------~-------~v~gvD~s~~~l~   95 (222)
                      -+++..++|.-||+|.+++.+|....                                 +       .++|+|+++.+++
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            34667999999999999998875431                                 1       3789999999999


Q ss_pred             HHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------HHH
Q 047371           96 SAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------LPQ  164 (222)
Q Consensus        96 ~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~  164 (222)
                      .|+.|+...|+. +.|.|...|+..+..                      +.+.+|++++|||+.-           +..
T Consensus       269 ~Ak~NA~~AGv~-d~I~f~~~d~~~l~~----------------------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~  325 (381)
T COG0116         269 GAKANARAAGVG-DLIEFKQADATDLKE----------------------PLEEYGVVISNPPYGERLGSEALVAKLYRE  325 (381)
T ss_pred             HHHHHHHhcCCC-ceEEEEEcchhhCCC----------------------CCCcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence            999999999997 689999999877642                      2368999999999853           455


Q ss_pred             HHHHHHHcccCCeEEEEec
Q 047371          165 LADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       165 ~l~~~~~~LkpgG~l~~~~  183 (222)
                      +.+.+.+.++--+..++++
T Consensus       326 fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         326 FGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHHHhcCCceEEEEc
Confidence            6778888888888877753

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.84  E-value=6.1e-08  Score=82.09  Aligned_cols=142  Identities=16%  Similarity=0.175  Sum_probs=98.3

Q ss_pred             ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      .|..|..........+....  .+++..|||++++.|.-+.+++..  +.+.+++.|+++..+...+.++.+.|+.  ++
T Consensus        61 ~~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v  138 (283)
T PF01189_consen   61 EFKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--NV  138 (283)
T ss_dssp             HHHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--SE
T ss_pred             hhhCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc--eE
Confidence            45555555444444443332  457899999999999999988875  3579999999999999999999999986  66


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHH
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLA  166 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l  166 (222)
                      .....|...+..                    ......||.|+.+.|+..                         ..+++
T Consensus       139 ~~~~~D~~~~~~--------------------~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL  198 (283)
T PF01189_consen  139 IVINADARKLDP--------------------KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREIL  198 (283)
T ss_dssp             EEEESHHHHHHH--------------------HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHH
T ss_pred             EEEeeccccccc--------------------cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHH
Confidence            666555433310                    002346999999888643                         23579


Q ss_pred             HHHHHcc----cCCeEEEEecC--CCCcHHHHHH-HHHhh
Q 047371          167 DHIVSYA----KPGAVVGISGI--LSEQLPRIIN-RYSEF  199 (222)
Q Consensus       167 ~~~~~~L----kpgG~l~~~~~--~~~~~~~~~~-~~~~~  199 (222)
                      +.+.+.+    ||||++++++.  ..++.+++++ .++.+
T Consensus       199 ~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~  238 (283)
T PF01189_consen  199 DNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH  238 (283)
T ss_dssp             HHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred             HHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence            9999999    99999998644  3344444444 44443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK00536 speE spermidine synthase; Provisional

Probab=98.83  E-value=1e-07  Score=79.62  Aligned_cols=135  Identities=11%  Similarity=-0.001  Sum_probs=95.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+..++||-+|.|.|..+..+.+++ .+|+-+|+++.+++.+++.+..  .+++..++++...    +.        .  
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~--------~--  134 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LL--------D--  134 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hh--------h--
Confidence            4567999999999999999999987 4999999999999999996653  2344456665531    10        0  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe-cCC---CCcHHHHHHHHHhhhhccee----
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS-GIL---SEQLPRIINRYSEFLEDILV----  205 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~---~~~~~~~~~~~~~~~~~~~~----  205 (222)
                                 ...++||+|+++..+.  ..+.+.+.+.|+|||.++.. +.+   .+....+.+.+...|.....    
T Consensus       135 -----------~~~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~  201 (262)
T PRK00536        135 -----------LDIKKYDLIICLQEPD--IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAP  201 (262)
T ss_pred             -----------ccCCcCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEec
Confidence                       0246899999986544  67889999999999999983 222   23335555566665653332    


Q ss_pred             -cccCCceEeeccc
Q 047371          206 -SEKDDWRCVSGTK  218 (222)
Q Consensus       206 -~~~~~w~~~~~~k  218 (222)
                       ...|.|.-+.+.|
T Consensus       202 vp~~g~wgf~~aS~  215 (262)
T PRK00536        202 LRILSNKGYIYASF  215 (262)
T ss_pred             CCCcchhhhheecC
Confidence             2236786666655

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.81  E-value=6.7e-08  Score=79.19  Aligned_cols=49  Identities=22%  Similarity=0.281  Sum_probs=39.9

Q ss_pred             HHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH
Q 047371           48 CLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS   96 (222)
Q Consensus        48 ~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~   96 (222)
                      +..++..+  ..+++++||+|||+|.++..+++.+..+|+|+|+++.++..
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            34444443  23678999999999999999999888899999999988866

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.81  E-value=7e-08  Score=77.24  Aligned_cols=123  Identities=14%  Similarity=0.144  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhhcCCCc-EEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCcee-EEecCCcccc
Q 047371           46 KLCLLLLQSLIKGGEL-FLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK-LHLVPDRTFT  122 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~-vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~-~~~~~~~~~~  122 (222)
                      .-+++.|++++++... |||+|+|+|..+..+++ .+.-+..-.|.++..+......+...++.  |+. -...|+....
T Consensus        12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--NVRPPLALDVSAPP   89 (204)
T ss_pred             hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--ccCCCeEeecCCCC
Confidence            4467788887776665 99999999999998886 47677888899999988888777766654  221 1222322211


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      +.... ..+.             ..++||.|++..++|.     ...+++.+.++|++||.+++.+.
T Consensus        90 w~~~~-~~~~-------------~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   90 WPWEL-PAPL-------------SPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             Ccccc-cccc-------------CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            10000 0000             3568999999777765     34589999999999999999654

The function of this family is unknown.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.79  E-value=2.9e-08  Score=83.96  Aligned_cols=124  Identities=10%  Similarity=0.185  Sum_probs=79.8

Q ss_pred             CCcEEEEccCCCH----HHHHHHHh-C----CCEEEEEeCChHHHHHHHHHHHh----cCCCCCceeEEecC--C-cccc
Q 047371           59 GELFLDYGTGSGI----LGIAAIKF-G----AAMFVGVDIDPQVIKSAHQNAAL----NNIGPKKIKLHLVP--D-RTFT  122 (222)
Q Consensus        59 ~~~vLD~G~G~G~----~~~~la~~-~----~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~v~~~~~~--~-~~~~  122 (222)
                      .-+||..||++|.    +++.+.+. +    ..+|+|+|+|+.+++.|++....    .++......-++..  . ..-.
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999994    44444442 1    35799999999999999886431    11111011111110  0 0001


Q ss_pred             cccccccccchhccccccccC-CCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371          123 ASMNERVDGVVEYLSSHEIRG-ISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +.+.+.+...|.++-.|.+.. +.+.+.||+|+|..++.+     ...+++.+.+.|+|||++++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            234455667777777777773 444678999999554433     456899999999999998884

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.78  E-value=1.7e-07  Score=77.79  Aligned_cols=172  Identities=16%  Similarity=0.210  Sum_probs=106.8

Q ss_pred             eeEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhc
Q 047371           27 TNIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      +.+.++-...+.... ....+++........+.+++||-+|.|.|..+..+.+++ ..+++.+|+++.+++.|++.+...
T Consensus        44 ~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~  123 (246)
T PF01564_consen   44 RILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEF  123 (246)
T ss_dssp             EEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHH
T ss_pred             cEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhh
Confidence            333445554443222 223333333332334568999999999999999988875 579999999999999999977642


Q ss_pred             C--CCCCceeEEecCCcccccccccccccchhccccccccCCCCCC-CeeEEEeccccc-------cHHHHHHHHHHccc
Q 047371          105 N--IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETE-EYDVVIANILLN-------PLPQLADHIVSYAK  174 (222)
Q Consensus       105 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~v~~~~~~~-------~~~~~l~~~~~~Lk  174 (222)
                      .  ....++++...|+..+..                   .  ..+ +||+|+.+..-.       ...++++.+.+.|+
T Consensus       124 ~~~~~d~r~~i~~~Dg~~~l~-------------------~--~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~  182 (246)
T PF01564_consen  124 SEGLDDPRVRIIIGDGRKFLK-------------------E--TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK  182 (246)
T ss_dssp             HTTGGSTTEEEEESTHHHHHH-------------------T--SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE
T ss_pred             ccccCCCceEEEEhhhHHHHH-------------------h--ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcC
Confidence            2  334688999888765521                   1  233 899999855321       13678999999999


Q ss_pred             CCeEEEEec-CC---CCcHHHHHHHHHhhhhccee-------cccCCceEeecccC
Q 047371          175 PGAVVGISG-IL---SEQLPRIINRYSEFLEDILV-------SEKDDWRCVSGTKF  219 (222)
Q Consensus       175 pgG~l~~~~-~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~w~~~~~~k~  219 (222)
                      |+|.+++.. ..   ......+.+.+...|.....       ...+.|.-..+++.
T Consensus       183 ~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~  238 (246)
T PF01564_consen  183 PDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKD  238 (246)
T ss_dssp             EEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESS
T ss_pred             CCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCC
Confidence            999999842 12   23334445555555543322       22344555555543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.78  E-value=3.1e-09  Score=85.60  Aligned_cols=111  Identities=23%  Similarity=0.363  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHhhh-cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           44 TTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        44 ~~~~~~~~l~~~~-~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      .+.++.+.+...- .+-.++||+|||+|..+..+... ..+++|+|+|..|++.|.+.-....+       ...+...| 
T Consensus       110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~L-------~~Aea~~F-  180 (287)
T COG4976         110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDTL-------YVAEAVLF-  180 (287)
T ss_pred             cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHHH-------HHHHHHHH-
Confidence            4455555554442 22479999999999999988766 36799999999999999764221111       11111111 


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (222)
                            ....             ..++||+|.+..++..   +..++..+...|+|||.+.++
T Consensus       181 ------l~~~-------------~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS  224 (287)
T COG4976         181 ------LEDL-------------TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS  224 (287)
T ss_pred             ------hhhc-------------cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence                  0001             4678999998766543   567899999999999999985

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.4e-07  Score=77.91  Aligned_cols=126  Identities=17%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.||.+|++-|+|+|+++..+++.  +-++++..|+.....+.|.+..+..++. +++++..-|....-+          
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF----------  171 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGF----------  171 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCc----------
Confidence            679999999999999999988874  5689999999999999999999999986 689888887754321          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeE-EEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAV-VGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                               .. +...+|.|+.+.|-.  ...+..+.++||.+|. ++....+-++...-.+.+... |..++
T Consensus       172 ---------~~-ks~~aDaVFLDlPaP--w~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~  232 (314)
T KOG2915|consen  172 ---------LI-KSLKADAVFLDLPAP--WEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIE  232 (314)
T ss_pred             ---------cc-cccccceEEEcCCCh--hhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEE
Confidence                     01 366899999887764  4567777788998885 444344556666777776663 43343

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=2.9e-08  Score=74.70  Aligned_cols=79  Identities=24%  Similarity=0.318  Sum_probs=64.6

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .|+.++|+|||.|-+++..+..+...++|+|++|.+++.+.+|+....++   +++.+++......              
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq---idlLqcdildle~--------------  110 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ---IDLLQCDILDLEL--------------  110 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh---hheeeeeccchhc--------------
Confidence            68999999999999987666667789999999999999999998877663   4666666654432              


Q ss_pred             cccccCCCCCCCeeEEEecccccc
Q 047371          138 SHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                              ..+.||.++.|+|+.-
T Consensus       111 --------~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen  111 --------KGGIFDTAVINPPFGT  126 (185)
T ss_pred             --------cCCeEeeEEecCCCCc
Confidence                    4578999999999864

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.73  E-value=2.8e-07  Score=78.28  Aligned_cols=71  Identities=20%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      ++.+++..+ .+++..++|.+||.|..+..+++..  ..+|+|+|.++.+++.|++++..  .  .++.+...+...+
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~--~ri~~i~~~f~~l   80 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F--GRFTLVHGNFSNL   80 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C--CcEEEEeCCHHHH
Confidence            344555444 3578899999999999999988763  47899999999999999987654  2  4788888777654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.73  E-value=1.2e-07  Score=86.45  Aligned_cols=118  Identities=15%  Similarity=0.085  Sum_probs=88.5

Q ss_pred             CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +..+||+|||.|.++..+|.. +...++|+|+....+..+.+.+...++.  |+.+...+...+.               
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~~~~~~~~~---------------  410 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLFPNNLDLIL---------------  410 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEEcCCHHHHH---------------
Confidence            557999999999999988864 7789999999999999988888777875  7777666543221               


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                           ...+++++|.|+++.|-.|           ...+++.+.+.|||||.+.+.+--..-.....+.+.+
T Consensus       411 -----~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~  477 (506)
T PRK01544        411 -----NDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ  477 (506)
T ss_pred             -----HhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence                 1126778999999877543           3568999999999999999965444444444444444

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.71  E-value=2.5e-07  Score=78.11  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=81.3

Q ss_pred             CCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcC--CCCCceeEEecCCcccccccccccccchhc
Q 047371           59 GELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNN--IGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++||-+|.|.|..+..+.+++ -.+++.+|+++..++.+++.+....  ...+++++...|+-.+..            
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~------------  144 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR------------  144 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH------------
Confidence            3699999999999999988874 5789999999999999999886433  223688888888766532            


Q ss_pred             cccccccCCCCCCCeeEEEeccc--ccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANIL--LNP-----LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~--~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             .  ..++||+|+++..  ..+     ...+++.+.++|+++|.++..
T Consensus       145 -------~--~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         145 -------D--CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             -------h--CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence                   0  2347999998542  212     467899999999999999985

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.68  E-value=1.9e-07  Score=77.19  Aligned_cols=92  Identities=16%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      .+..+.+++... +++++.|||+|.|+|.++..+.+.+ ++|+|+|+++.++...+++.+....+ ..+++..+|.... 
T Consensus        43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~-  119 (315)
T KOG0820|consen   43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKT-  119 (315)
T ss_pred             CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccC-
Confidence            344444444433 7889999999999999999999886 78999999999999999988765554 4677888877544 


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                                             +...||.+++|.|+..
T Consensus       120 -----------------------d~P~fd~cVsNlPyqI  135 (315)
T KOG0820|consen  120 -----------------------DLPRFDGCVSNLPYQI  135 (315)
T ss_pred             -----------------------CCcccceeeccCCccc
Confidence                                   4567999999998764

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.68  E-value=9.9e-08  Score=76.86  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=69.8

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      ..+.||.|||.|.++..+...-+.+|-.+|..+..++.|++.+....-  .-.++.......+                 
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f-----------------  116 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDF-----------------  116 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG------------------
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhc-----------------
Confidence            358999999999999977655578999999999999999987654111  1234555544444                 


Q ss_pred             ccccCCCC-CCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEe
Q 047371          139 HEIRGISE-TEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       139 ~~~~~~~~-~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~  182 (222)
                            .| .++||+|.+.-.+.|+.     ++++.+...|+|+|.+++.
T Consensus       117 ------~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  117 ------TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             ---------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence                  24 47999999988877744     5899999999999999994

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=5.2e-07  Score=74.93  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=81.8

Q ss_pred             ccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE
Q 047371           36 AFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH  114 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  114 (222)
                      .||+..-.....+...+... +.+++.|||+|+|.|.+|..|++.+ .+|+++|+++.++...++....    .++++++
T Consensus         7 ~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi   81 (259)
T COG0030           7 RLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAP----YDNLTVI   81 (259)
T ss_pred             CcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhccc----ccceEEE
Confidence            34443333333344444433 5568999999999999999999986 5799999999999999887651    2488999


Q ss_pred             ecCCcccccccccccccchhccccccccCCCCCC-CeeEEEeccccccHHHHHHHHHHcccC
Q 047371          115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETE-EYDVVIANILLNPLPQLADHIVSYAKP  175 (222)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~v~~~~~~~~~~~~l~~~~~~Lkp  175 (222)
                      .+|+..+.+                      +.- .++.|++|.||+....++.++...-.+
T Consensus        82 ~~DaLk~d~----------------------~~l~~~~~vVaNlPY~Isspii~kll~~~~~  121 (259)
T COG0030          82 NGDALKFDF----------------------PSLAQPYKVVANLPYNISSPILFKLLEEKFI  121 (259)
T ss_pred             eCchhcCcc----------------------hhhcCCCEEEEcCCCcccHHHHHHHHhccCc
Confidence            999877642                      111 679999999999877776665554333

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=4.7e-07  Score=72.53  Aligned_cols=133  Identities=17%  Similarity=0.195  Sum_probs=93.9

Q ss_pred             HHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           48 CLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        48 ~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      +.++.+++  ++++..|+|+|+.+|+.+..+++.  ....|+|+|+.|-           ..+  .++.+...|...-. 
T Consensus        33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~--~~V~~iq~d~~~~~-   98 (205)
T COG0293          33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPI--PGVIFLQGDITDED-   98 (205)
T ss_pred             HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccC--CCceEEeeeccCcc-
Confidence            44444444  778999999999999999998875  2345999999872           122  24667777664431 


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccc--------ccH------HHHHHHHHHcccCCeEEEEecCCCCcH
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL--------NPL------PQLADHIVSYAKPGAVVGISGILSEQL  189 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~--------~~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~  189 (222)
                          ....+         .......++|+|++++.-        ++.      ...++-+...|+|||.+++..+.....
T Consensus        99 ----~~~~l---------~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~  165 (205)
T COG0293          99 ----TLEKL---------LEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF  165 (205)
T ss_pred             ----HHHHH---------HHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence                11111         112245568999987643        222      124677788999999999999999999


Q ss_pred             HHHHHHHHhhhhcceecc
Q 047371          190 PRIINRYSEFLEDILVSE  207 (222)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~  207 (222)
                      .++...+..+|..+....
T Consensus       166 ~~~l~~~~~~F~~v~~~K  183 (205)
T COG0293         166 EDLLKALRRLFRKVKIFK  183 (205)
T ss_pred             HHHHHHHHHhhceeEEec
Confidence            999999999987777654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.67  E-value=5.1e-08  Score=75.65  Aligned_cols=113  Identities=19%  Similarity=0.171  Sum_probs=69.6

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      ..|+|++||.|..++.+|+. ..+|+++|+++..++.|+.|+...|+. +++.+..+|......                
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~----------------   62 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELLK----------------   62 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGG----------------
T ss_pred             CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHh----------------
Confidence            36999999999999999988 478999999999999999999999986 689999998755421                


Q ss_pred             cccCCCCCCCeeEEEecccccc-------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          140 EIRGISETEEYDVVIANILLNP-------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                         .......+|+|+++||...                   ..++++.+.++ .+.  +++.=..+.+..++.+..
T Consensus        63 ---~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~n--v~l~LPRn~dl~ql~~~~  132 (163)
T PF09445_consen   63 ---RLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TPN--VVLFLPRNSDLNQLSQLT  132 (163)
T ss_dssp             ---GB------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S---EEEEEETTB-HHHHHHT-
T ss_pred             ---hccccccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhh-CCC--EEEEeCCCCCHHHHHHHh
Confidence               0001122899999998532                   23344544433 333  223224666777776654

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.64  E-value=2.7e-07  Score=76.15  Aligned_cols=89  Identities=15%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      ..++||+|+|.|.++..++.. ..+|+++|.|+.|....++    .|..     ..  +...+..               
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~~-----vl--~~~~w~~---------------  147 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGFT-----VL--DIDDWQQ---------------  147 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCCe-----EE--ehhhhhc---------------
Confidence            468999999999999999876 5789999999998665544    3432     22  2222210               


Q ss_pred             ccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEE
Q 047371          139 HEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~  181 (222)
                             ...+||+|.|-..++-   ...+++.+++.|+|+|++++
T Consensus       148 -------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lil  186 (265)
T PF05219_consen  148 -------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLIL  186 (265)
T ss_pred             -------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence                   3457999999666543   55689999999999999988

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.63  E-value=1.9e-07  Score=72.47  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             EEEeCChHHHHHHHHHHHhcCCC-CCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--
Q 047371           85 VGVDIDPQVIKSAHQNAALNNIG-PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--  161 (222)
Q Consensus        85 ~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--  161 (222)
                      +|+|+|+.|++.|+++....... ..++++...|...++.                      ++++||+|++...+++  
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----------------------~~~~fD~v~~~~~l~~~~   58 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----------------------DDCEFDAVTMGYGLRNVV   58 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----------------------CCCCeeEEEecchhhcCC
Confidence            48999999999998766432211 1368899888876643                      6778999999887765  


Q ss_pred             -HHHHHHHHHHcccCCeEEEEecCCC
Q 047371          162 -LPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       162 -~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                       ....+++++++|||||.+++.++..
T Consensus        59 d~~~~l~ei~rvLkpGG~l~i~d~~~   84 (160)
T PLN02232         59 DRLRAMKEMYRVLKPGSRVSILDFNK   84 (160)
T ss_pred             CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence             5568999999999999999876643

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.63  E-value=7.7e-07  Score=71.99  Aligned_cols=108  Identities=15%  Similarity=0.210  Sum_probs=85.6

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.||+|.=+|..++.+|..  ..++|+++|+++...+.+....+..+.. +.+++..+++...-       .++   
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~esL-------d~l---  141 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPALESL-------DEL---  141 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchhhhH-------HHH---
Confidence            5889999999999888876653  4589999999999999999888888887 68888888764321       111   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                            .+-.+.+.||++|.+.--..+..+.+++.+++|+||++++.
T Consensus       142 ------~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  142 ------LADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             ------HhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence                  11015678999998776666778999999999999999984

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.63  E-value=4e-07  Score=83.47  Aligned_cols=66  Identities=20%  Similarity=0.091  Sum_probs=47.9

Q ss_pred             CCcchhHHHHHHHHhhh-c--------CCCcEEEEccCCCHHHHHHHHh-C--------CCEEEEEeCChHHHHHHHHHH
Q 047371           40 GEHATTKLCLLLLQSLI-K--------GGELFLDYGTGSGILGIAAIKF-G--------AAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        40 ~~~~~~~~~~~~l~~~~-~--------~~~~vLD~G~G~G~~~~~la~~-~--------~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      |.+.|+..+.+.+...+ +        ...+|||.|||+|.+...++.. .        ..+++|+|+++.++..++.++
T Consensus         4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l   83 (524)
T TIGR02987         4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL   83 (524)
T ss_pred             cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence            45555665655555432 1        2358999999999998877642 1        157899999999999999988


Q ss_pred             HhcC
Q 047371          102 ALNN  105 (222)
Q Consensus       102 ~~~~  105 (222)
                      ...+
T Consensus        84 ~~~~   87 (524)
T TIGR02987        84 GEFA   87 (524)
T ss_pred             hhcC
Confidence            6554

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.62  E-value=5.2e-07  Score=85.42  Aligned_cols=105  Identities=26%  Similarity=0.264  Sum_probs=75.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-------------------------------------------CCCEEEEEeCChHH
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-------------------------------------------GAAMFVGVDIDPQV   93 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-------------------------------------------~~~~v~gvD~s~~~   93 (222)
                      +++..++|.+||+|.+.+.++..                                           ...+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            46789999999999999877641                                           01269999999999


Q ss_pred             HHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHH
Q 047371           94 IKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLA  166 (222)
Q Consensus        94 l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l  166 (222)
                      ++.|+.|+..+++. +.+.+...|...+..       .             ...+++|+|++|||+..       ...+.
T Consensus       269 v~~A~~N~~~~g~~-~~i~~~~~D~~~~~~-------~-------------~~~~~~d~IvtNPPYg~r~~~~~~l~~lY  327 (702)
T PRK11783        269 IQAARKNARRAGVA-ELITFEVKDVADLKN-------P-------------LPKGPTGLVISNPPYGERLGEEPALIALY  327 (702)
T ss_pred             HHHHHHHHHHcCCC-cceEEEeCChhhccc-------c-------------cccCCCCEEEECCCCcCccCchHHHHHHH
Confidence            99999999999986 468888887755421       0             02346999999999853       12233


Q ss_pred             HHHHHcc---cCCeEEEEe
Q 047371          167 DHIVSYA---KPGAVVGIS  182 (222)
Q Consensus       167 ~~~~~~L---kpgG~l~~~  182 (222)
                      ..+.+.+   .+|+.+++.
T Consensus       328 ~~lg~~lk~~~~g~~~~ll  346 (702)
T PRK11783        328 SQLGRRLKQQFGGWNAALF  346 (702)
T ss_pred             HHHHHHHHHhCCCCeEEEE
Confidence            3333333   388887763

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.61  E-value=3.2e-07  Score=72.47  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=79.4

Q ss_pred             HHHHHHhh--hcC--CCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           48 CLLLLQSL--IKG--GELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        48 ~~~~l~~~--~~~--~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +.+++.++  +++  +.++||+||++|.++..+.+..  ..+++|+|+.+.           ....  ++.....|....
T Consensus         9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~--~~~~i~~d~~~~   75 (181)
T PF01728_consen    9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQ--NVSFIQGDITNP   75 (181)
T ss_dssp             HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-T--TEEBTTGGGEEE
T ss_pred             HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cccc--ceeeeecccchh
Confidence            45555554  344  4899999999999999999875  689999999885           1111  333433333221


Q ss_pred             ccccccccccchhccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCC
Q 047371          122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSE  187 (222)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (222)
                      ..  ........        .  ...+++|+|+++.....              ....+..+...|+|||.+++..+...
T Consensus        76 ~~--~~~i~~~~--------~--~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~  143 (181)
T PF01728_consen   76 EN--IKDIRKLL--------P--ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP  143 (181)
T ss_dssp             EH--SHHGGGSH--------G--TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred             hH--HHhhhhhc--------c--ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence            00  00111110        0  02368999999873211              11235566778999999888656544


Q ss_pred             cHHHHHHHHHhhhhcceecc
Q 047371          188 QLPRIINRYSEFLEDILVSE  207 (222)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~  207 (222)
                      ...++...+...|..+....
T Consensus       144 ~~~~~~~~l~~~F~~v~~~K  163 (181)
T PF01728_consen  144 EIEELIYLLKRCFSKVKIVK  163 (181)
T ss_dssp             TSHHHHHHHHHHHHHEEEEE
T ss_pred             cHHHHHHHHHhCCeEEEEEE
Confidence            44588888888876665443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.59  E-value=5.4e-07  Score=74.37  Aligned_cols=94  Identities=21%  Similarity=0.279  Sum_probs=72.8

Q ss_pred             cCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+..+|+|+|+|.|.++..+++ ++..+++..|+ |.+++.+++        .+++++..+|.-..          +   
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~~----------~---  156 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFDP----------L---  156 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTTC----------C---
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHHhh----------h---
Confidence            4567899999999999998776 57789999999 888888887        25899988876411          0   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCC--eEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPG--AVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lkpg--G~l~~~~~  184 (222)
                                +.  +|++++...+|..     ..+|+++++.|+||  |.|++.+.
T Consensus       157 ----------P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  157 ----------PV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             ----------SS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             ----------cc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence                      33  9999998888763     35899999999999  99998644

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.54  E-value=4.7e-06  Score=69.82  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=82.4

Q ss_pred             CCcEEEEccCCCHHHHHHH-HhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           59 GELFLDYGTGSGILGIAAI-KFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la-~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .-+|+|++||.|...+-+. ..+  ..++...|+++..++..++.++..++. +-++|...|+-...     ....    
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~dAfd~~-----~l~~----  205 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQGDAFDRD-----SLAA----  205 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEecCCCCHh-----Hhhc----
Confidence            4589999999998776544 444  368999999999999999999999997 24488888763321     1111    


Q ss_pred             cccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEecCCCCcHHH
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGISGILSEQLPR  191 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  191 (222)
                                -....+++++...++.      ....+..+.+++.|||+++.++-+.+...+
T Consensus       206 ----------l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle  257 (311)
T PF12147_consen  206 ----------LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE  257 (311)
T ss_pred             ----------cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH
Confidence                      1334689998877654      334688999999999999997654433333

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.51  E-value=2e-06  Score=72.11  Aligned_cols=118  Identities=16%  Similarity=0.234  Sum_probs=83.5

Q ss_pred             CcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCcee
Q 047371           34 GLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK  112 (222)
Q Consensus        34 ~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~  112 (222)
                      ...+|+..-.....+..++... ..+++.|+|+|+|.|.++..+.+.+ .+++++|.++..++..++...    ..++++
T Consensus         5 kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~----~~~~~~   79 (262)
T PF00398_consen    5 KKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA----SNPNVE   79 (262)
T ss_dssp             -CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT----TCSSEE
T ss_pred             CCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh----hcccce
Confidence            3445554333444444554444 3478999999999999999999887 899999999999998888654    225889


Q ss_pred             EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccC
Q 047371          113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKP  175 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkp  175 (222)
                      +...|+..+...  .   .              ..+....+++|.|++....++.++...-+.
T Consensus        80 vi~~D~l~~~~~--~---~--------------~~~~~~~vv~NlPy~is~~il~~ll~~~~~  123 (262)
T PF00398_consen   80 VINGDFLKWDLY--D---L--------------LKNQPLLVVGNLPYNISSPILRKLLELYRF  123 (262)
T ss_dssp             EEES-TTTSCGG--G---H--------------CSSSEEEEEEEETGTGHHHHHHHHHHHGGG
T ss_pred             eeecchhccccH--H---h--------------hcCCceEEEEEecccchHHHHHHHhhcccc
Confidence            999988765320  0   0              124568899999998777888777775454

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.51  E-value=2.4e-06  Score=67.80  Aligned_cols=96  Identities=20%  Similarity=0.189  Sum_probs=78.6

Q ss_pred             cEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           61 LFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      +++|+|+|.|.-++.++= .+..+++.+|.....+.-.+......+++  |+++....++...                 
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~~-----------------  111 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS--NVEVINGRAEEPE-----------------  111 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S--SEEEEES-HHHTT-----------------
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC--CEEEEEeeecccc-----------------
Confidence            899999999998887764 46788999999999999988888888886  8999888776511                 


Q ss_pred             cccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          140 EIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                            ...+||+|++...- .+..++..+...+++||.+++.
T Consensus       112 ------~~~~fd~v~aRAv~-~l~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  112 ------YRESFDVVTARAVA-PLDKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             ------TTT-EEEEEEESSS-SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ------cCCCccEEEeehhc-CHHHHHHHHHHhcCCCCEEEEE
Confidence                  57789999998754 4788999999999999998885

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.50  E-value=3.3e-07  Score=74.14  Aligned_cols=115  Identities=16%  Similarity=0.115  Sum_probs=89.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +....++|+|||-|.+..++...+-.+++-+|.|..|++.++.. ..+.+   .+.....|-+.+.+             
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i---~~~~~v~DEE~Ldf-------------  133 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI---ETSYFVGDEEFLDF-------------  133 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce---EEEEEecchhcccc-------------
Confidence            34578999999999999999888788999999999999998764 22333   23344455444433             


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS  197 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (222)
                               ..+++|+|++...+|+.   +.-+.++...|||+|.++-+-+..+...+++-.++
T Consensus       134 ---------~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slq  188 (325)
T KOG2940|consen  134 ---------KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQ  188 (325)
T ss_pred             ---------cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhh
Confidence                     78899999999988875   44688899999999999988788888887776654

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.46  E-value=1.2e-06  Score=77.08  Aligned_cols=133  Identities=23%  Similarity=0.346  Sum_probs=89.7

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhh---hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHH
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSL---IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQ   99 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~---~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~   99 (222)
                      .....+.||.+.|   +...+-++..++..+   ...+.++||.-+|+|.-++..+..  +..+|++.|+|+.+++..++
T Consensus        16 ~~~~vFYNP~~~~---nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~   92 (377)
T PF02005_consen   16 KKAPVFYNPVMEF---NRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKR   92 (377)
T ss_dssp             TTSSSS--GGGHH---HHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHH
T ss_pred             CCCCcccCcchhc---ccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHH
Confidence            3456788888877   444444442222222   234568999999999988876654  55789999999999999999


Q ss_pred             HHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEE
Q 047371          100 NAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV  179 (222)
Q Consensus       100 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l  179 (222)
                      |+..+++..+.+.+...|+..++.                     .....||+|=.+| +.....+++.+.+.++.||.+
T Consensus        93 N~~~N~~~~~~~~v~~~DAn~ll~---------------------~~~~~fD~IDlDP-fGSp~pfldsA~~~v~~gGll  150 (377)
T PF02005_consen   93 NLELNGLEDERIEVSNMDANVLLY---------------------SRQERFDVIDLDP-FGSPAPFLDSALQAVKDGGLL  150 (377)
T ss_dssp             HHHHCT-SGCCEEEEES-HHHHHC---------------------HSTT-EEEEEE---SS--HHHHHHHHHHEEEEEEE
T ss_pred             hHhhccccCceEEEehhhHHHHhh---------------------hccccCCEEEeCC-CCCccHhHHHHHHHhhcCCEE
Confidence            999999984357777777755431                     1467899999887 666778999999999999999


Q ss_pred             EEe
Q 047371          180 GIS  182 (222)
Q Consensus       180 ~~~  182 (222)
                      +++
T Consensus       151 ~vT  153 (377)
T PF02005_consen  151 CVT  153 (377)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            994

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=1.9e-06  Score=70.11  Aligned_cols=143  Identities=17%  Similarity=0.164  Sum_probs=93.9

Q ss_pred             eEeccceeeeecCCCCCCCcceeEEeC-CCcccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCC
Q 047371            6 VEVTKGLWIVPEWSTPPDVQATNIILN-PGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAA   82 (222)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~   82 (222)
                      |.++.+...+|+ ....  ....+.+. +...|.+.   ....+...+..+  ..++..+||+|+.||.++..+.+.++.
T Consensus        30 V~Vng~~v~KP~-~~V~--~~~~i~v~~~~~~yVSR---G~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk  103 (245)
T COG1189          30 VLVNGEKVTKPS-QLVD--IDDEIEVKGEEQPYVSR---GGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAK  103 (245)
T ss_pred             EEECCEEecCcc-eecC--CCceEEEcccCcCcccc---HHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCc
Confidence            566666667776 3322  22334444 44454222   223334444444  457899999999999999999999999


Q ss_pred             EEEEEeCChHHHHHHHHHHHhcCCCCCcee-EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371           83 MFVGVDIDPQVIKSAHQNAALNNIGPKKIK-LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus        83 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                      +|+|+|..-.++..--++-       .++. +...++..+..      ..              -.+..|+++++..+-.
T Consensus       104 ~VyavDVG~~Ql~~kLR~d-------~rV~~~E~tN~r~l~~------~~--------------~~~~~d~~v~DvSFIS  156 (245)
T COG1189         104 HVYAVDVGYGQLHWKLRND-------PRVIVLERTNVRYLTP------ED--------------FTEKPDLIVIDVSFIS  156 (245)
T ss_pred             EEEEEEccCCccCHhHhcC-------CcEEEEecCChhhCCH------HH--------------cccCCCeEEEEeehhh
Confidence            9999999887766543321       1322 22333322211      00              1336899999999999


Q ss_pred             HHHHHHHHHHcccCCeEEEE
Q 047371          162 LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~  181 (222)
                      +..++..+..++++++.++.
T Consensus       157 L~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         157 LKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             HHHHHHHHHHhcCCCceEEE
Confidence            99999999999999998876

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.41  E-value=5.7e-06  Score=72.28  Aligned_cols=120  Identities=16%  Similarity=0.132  Sum_probs=88.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++|.+|||+++.+|.-+.++|..  ..+.|+|.|.+...+...+.++.+.|+.  +......|...++.       +. 
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~--ntiv~n~D~~ef~~-------~~-  308 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT--NTIVSNYDGREFPE-------KE-  308 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC--ceEEEccCcccccc-------cc-
Confidence            458999999999999988877753  4578999999999999999999999986  55555566544421       00 


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC--CC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI--LS  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~--~~  186 (222)
                                  ..++||-|+.+.|+..                         ..+++..+..++++||+++.++.  ..
T Consensus       309 ------------~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~  376 (460)
T KOG1122|consen  309 ------------FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV  376 (460)
T ss_pred             ------------cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence                        1227999998877543                         34588999999999999998643  34


Q ss_pred             CcHHHHHHHHH
Q 047371          187 EQLPRIINRYS  197 (222)
Q Consensus       187 ~~~~~~~~~~~  197 (222)
                      +..+.+++..-
T Consensus       377 ~ENE~vV~yaL  387 (460)
T KOG1122|consen  377 EENEAVVDYAL  387 (460)
T ss_pred             hhhHHHHHHHH
Confidence            44444444443

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.38  E-value=5.7e-06  Score=66.79  Aligned_cols=121  Identities=21%  Similarity=0.200  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHH-------HhcCCCCCceeEE
Q 047371           44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNA-------ALNNIGPKKIKLH  114 (222)
Q Consensus        44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~-------~~~~~~~~~v~~~  114 (222)
                      ....+..+++.. +.+++.++|+|||.|.....++ ..+..+.+|+|+.+...+.|+...       ...+.....+.+.
T Consensus        27 ~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~  106 (205)
T PF08123_consen   27 SPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI  106 (205)
T ss_dssp             HHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred             CHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence            444555566554 6788999999999999877655 457777999999999887775433       2344443456666


Q ss_pred             ecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEec
Q 047371          115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      .+|......      ...             .-...|+|++|.....  +..-+......||+|.+++...
T Consensus       107 ~gdfl~~~~------~~~-------------~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~  158 (205)
T PF08123_consen  107 HGDFLDPDF------VKD-------------IWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTK  158 (205)
T ss_dssp             CS-TTTHHH------HHH-------------HGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred             ccCccccHh------Hhh-------------hhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECC
Confidence            655433210      000             0134799999765432  3344567777899998887643

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.38  E-value=4.3e-06  Score=67.02  Aligned_cols=130  Identities=16%  Similarity=0.202  Sum_probs=73.1

Q ss_pred             HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .+.+++.+. +++..|.|+|||.+.++..+. . .-.|...|+-+.           +    +.  +..+|....+.   
T Consensus        62 ~iI~~l~~~-~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva~-----------n----~~--Vtacdia~vPL---  118 (219)
T PF05148_consen   62 VIIEWLKKR-PKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVAP-----------N----PR--VTACDIANVPL---  118 (219)
T ss_dssp             HHHHHHCTS--TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------S----TT--EEES-TTS-S----
T ss_pred             HHHHHHHhc-CCCEEEEECCCchHHHHHhcc-c-CceEEEeeccCC-----------C----CC--EEEecCccCcC---
Confidence            344444432 446799999999999996543 2 236899998541           1    13  44455544432   


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccc--ccHHHHHHHHHHcccCCeEEEEecCC--CCcHHHHHHHHHhh-hh
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILL--NPLPQLADHIVSYAKPGAVVGISGIL--SEQLPRIINRYSEF-LE  201 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~-~~  201 (222)
                                         +++.+|++++...+  ..+.+++.++.|+|||||.+.|.++.  -.+...+.+.++.. |.
T Consensus       119 -------------------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~  179 (219)
T PF05148_consen  119 -------------------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFK  179 (219)
T ss_dssp             --------------------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEE
T ss_pred             -------------------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCe
Confidence                               68899999986554  44789999999999999999997653  35566777776664 55


Q ss_pred             cceec-ccCCceEeeccc
Q 047371          202 DILVS-EKDDWRCVSGTK  218 (222)
Q Consensus       202 ~~~~~-~~~~w~~~~~~k  218 (222)
                      ..... .......+..+|
T Consensus       180 ~~~~d~~n~~F~~f~F~K  197 (219)
T PF05148_consen  180 LKSKDESNKHFVLFEFKK  197 (219)
T ss_dssp             EEEEE--STTEEEEEEEE
T ss_pred             EEecccCCCeEEEEEEEE
Confidence            54433 233334444333

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.38  E-value=6.1e-06  Score=64.82  Aligned_cols=125  Identities=14%  Similarity=0.108  Sum_probs=85.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~  132 (222)
                      +.|+++|||+||.+|..+..+.+.  +.+.|.|+|+-+         +  .+.  +.+++..+ |.....          
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--~p~--~Ga~~i~~~dvtdp~----------  123 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--EPP--EGATIIQGNDVTDPE----------  123 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------c--cCC--CCcccccccccCCHH----------
Confidence            678999999999999999988864  678899999854         1  122  13333333 332221          


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccc--------c-----HH-HHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLN--------P-----LP-QLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~--------~-----~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                          ...++++..++.++|+|++++.-.        |     ++ ..+--+...++|+|.+++..+...+...+...+..
T Consensus       124 ----~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~  199 (232)
T KOG4589|consen  124 ----TYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA  199 (232)
T ss_pred             ----HHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH
Confidence                111122223778999999976532        1     11 23445566788999999988889999999999999


Q ss_pred             hhhcceecc
Q 047371          199 FLEDILVSE  207 (222)
Q Consensus       199 ~~~~~~~~~  207 (222)
                      .|..+....
T Consensus       200 ~f~~Vk~vK  208 (232)
T KOG4589|consen  200 VFTNVKKVK  208 (232)
T ss_pred             HhhhcEeeC
Confidence            987776543

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.36  E-value=5.5e-06  Score=63.94  Aligned_cols=117  Identities=14%  Similarity=0.212  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc
Q 047371           44 TTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR  119 (222)
Q Consensus        44 ~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~  119 (222)
                      ++....+.+.+.  ...|..|||+|.|+|-++..+.+.+  ...++++|.|+.......+...       .+++..+|+.
T Consensus        32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-------~~~ii~gda~  104 (194)
T COG3963          32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-------GVNIINGDAF  104 (194)
T ss_pred             CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-------Cccccccchh
Confidence            333344444433  3457899999999999999988763  5789999999999888877643       3346666654


Q ss_pred             ccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371          120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      .+...+.+                 .+...||.|+|..|+-.     ...+++.+...|.+||.++.-+.
T Consensus       105 ~l~~~l~e-----------------~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963         105 DLRTTLGE-----------------HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             hHHHHHhh-----------------cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            44211111                 15667999999766533     34689999999999999987443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.33  E-value=2.8e-06  Score=72.00  Aligned_cols=86  Identities=29%  Similarity=0.405  Sum_probs=49.6

Q ss_pred             CCcEEEEccCCCH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGSGI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .-++||+|||... +.+..++....+++|+|+++..++.|++++..+ +++ ++|.+.........      ..++    
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i------~~~i----  171 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDNI------FDGI----  171 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SS------TTTS----
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCcccc------chhh----
Confidence            3479999999874 455444443589999999999999999999998 887 58888765432111      1111    


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL  162 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~  162 (222)
                             ..+.+.||+.+||||++.-
T Consensus       172 -------~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  172 -------IQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             -------TT--S-EEEEEE-----SS
T ss_pred             -------hcccceeeEEecCCccccC
Confidence                   1145689999999999863

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.33  E-value=1.6e-05  Score=59.68  Aligned_cols=97  Identities=10%  Similarity=0.084  Sum_probs=63.7

Q ss_pred             CCCcEEEEccCCCH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+++|+|||+|. ++..|++.+ ..|+|+|+++.+++.++.+    +     +.+...|.-....             
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf~p~~-------------   72 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL----G-----LNAFVDDLFNPNL-------------   72 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh----C-----CeEEECcCCCCCH-------------
Confidence            45789999999996 888888876 5899999999998888765    2     2355555433211             


Q ss_pred             ccccccCCCCCCCeeEEEe-ccccccHHHHHHHHHHcccCCeEEEEecCCCCc
Q 047371          137 SSHEIRGISETEEYDVVIA-NILLNPLPQLADHIVSYAKPGAVVGISGILSEQ  188 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (222)
                              .-.+.+|+|.+ +||.+ +...+-.+++  +-|.-+++..+..+.
T Consensus        73 --------~~y~~a~liysirpp~e-l~~~~~~la~--~~~~~~~i~~l~~e~  114 (134)
T PRK04148         73 --------EIYKNAKLIYSIRPPRD-LQPFILELAK--KINVPLIIKPLSGEE  114 (134)
T ss_pred             --------HHHhcCCEEEEeCCCHH-HHHHHHHHHH--HcCCCEEEEcCCCCC
Confidence                    02456899998 45444 3334444444  334456665555444

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.33  E-value=1.3e-06  Score=68.73  Aligned_cols=96  Identities=22%  Similarity=0.345  Sum_probs=77.0

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      .+.+.|+|+|+|.++..+++. ..+|+++|.+|.....|++|+..+|..  ++.++.+|+..+                 
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~--n~evv~gDA~~y-----------------   92 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV--NWEVVVGDARDY-----------------   92 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc--ceEEEecccccc-----------------
Confidence            478999999999999998887 689999999999999999999878875  899999988766                 


Q ss_pred             ccccCCCCCCCeeEEEecccc-----ccHHHHHHHHHHcccCCeEEEE
Q 047371          139 HEIRGISETEEYDVVIANILL-----NPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                             .-...|+|+|.+.=     +.....+..+.+.|+-++.++=
T Consensus        93 -------~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076          93 -------DFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             -------cccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence                   33567999985431     2233467777778888877664

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.32  E-value=7.1e-06  Score=66.46  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=88.3

Q ss_pred             CCcEEEEccCCCHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           59 GELFLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +++++|+|+|.|.-++.+| ..+..+++-+|.....+.-.+......+++  |++++...++.+.               
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~--nv~i~~~RaE~~~---------------  130 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE--NVEIVHGRAEEFG---------------  130 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC--CeEEehhhHhhcc---------------
Confidence            5899999999999998877 456677999999999888888888888886  8999998887763               


Q ss_pred             cccccCCCCCCC-eeEEEeccccccHHHHHHHHHHcccCCeEEEEe--cCCCCcHHHHHHHHHhh
Q 047371          138 SHEIRGISETEE-YDVVIANILLNPLPQLADHIVSYAKPGAVVGIS--GILSEQLPRIINRYSEF  199 (222)
Q Consensus       138 ~~~~~~~~~~~~-~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~~  199 (222)
                              +... ||+|.+...- .+..+++-+..++|+||.++..  .-..+...+........
T Consensus       131 --------~~~~~~D~vtsRAva-~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~  186 (215)
T COG0357         131 --------QEKKQYDVVTSRAVA-SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPL  186 (215)
T ss_pred             --------cccccCcEEEeehcc-chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhh
Confidence                    2233 9999987744 4788899999999999987542  12344445555555444

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.31  E-value=1.4e-05  Score=64.61  Aligned_cols=129  Identities=19%  Similarity=0.197  Sum_probs=87.4

Q ss_pred             EEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371           62 FLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE  140 (222)
Q Consensus        62 vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (222)
                      |+|+||.-|.+.+.|.+.+ ..+++++|+++..++.|++++...++. +++.+..+|....                   
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~-------------------   60 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEV-------------------   60 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG-------------------
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccc-------------------
Confidence            6899999999999999875 456999999999999999999999987 5888888876432                   


Q ss_pred             ccCCCCCCCeeEEEeccc-cccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhccee---cccCCceEee
Q 047371          141 IRGISETEEYDVVIANIL-LNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILV---SEKDDWRCVS  215 (222)
Q Consensus       141 ~~~~~~~~~~D~v~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~w~~~~  215 (222)
                         +.+.+..|.|+...+ -.-+.++++.....++....+++.  +......+++.+... |..+..   ...+.+-.+.
T Consensus        61 ---l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILq--P~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi  135 (205)
T PF04816_consen   61 ---LKPGEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLILQ--PNTHAYELRRWLYENGFEIIDEDLVEENGRFYEII  135 (205)
T ss_dssp             -----GGG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEE--ESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEE
T ss_pred             ---cCCCCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEEEe--CCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEE
Confidence               113333787776543 333667888888877776677774  567788888888776 544432   3344444443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.30  E-value=2.5e-05  Score=66.60  Aligned_cols=74  Identities=24%  Similarity=0.304  Sum_probs=56.0

Q ss_pred             hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +-++.+.+..+ .+++..++|.-+|.|..+..+++. +.++|+|+|.++.+++.|++++....   .++.+...+...+
T Consensus         6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l   81 (305)
T TIGR00006         6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANF   81 (305)
T ss_pred             chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHH
Confidence            33444555444 457889999999999999988864 45899999999999999999876432   4777777766544

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.23  E-value=1.7e-05  Score=65.35  Aligned_cols=107  Identities=14%  Similarity=0.208  Sum_probs=72.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +....|.|+|||-+.++.   +. ..+|+..|+-+              +   +-.+..+|....+.             
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a--------------~---~~~V~~cDm~~vPl-------------  224 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA--------------V---NERVIACDMRNVPL-------------  224 (325)
T ss_pred             cCceEEEecccchhhhhh---cc-ccceeeeeeec--------------C---CCceeeccccCCcC-------------
Confidence            345689999999998776   22 34688888733              0   22244455544433             


Q ss_pred             ccccccCCCCCCCeeEEEecccc--ccHHHHHHHHHHcccCCeEEEEecCC--CCcHHHHHHHHHhh-hhcceec
Q 047371          137 SSHEIRGISETEEYDVVIANILL--NPLPQLADHIVSYAKPGAVVGISGIL--SEQLPRIINRYSEF-LEDILVS  206 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~-~~~~~~~  206 (222)
                               +++++|++++...+  ..+.+++.++.|+||+||.+++.++.  -.+...+...+... |+.....
T Consensus       225 ---------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d  290 (325)
T KOG3045|consen  225 ---------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD  290 (325)
T ss_pred             ---------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence                     78899999975433  45788999999999999999997653  34445566666554 5444443

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=2.3e-05  Score=67.67  Aligned_cols=130  Identities=18%  Similarity=0.270  Sum_probs=95.7

Q ss_pred             CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHH
Q 047371           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      ...-..+.||.+.|   +...+-.....+.+..  ...|+|.-+|+|.-++..+.. +..+++..|+||.+++.+++|+.
T Consensus        23 ~~~~pVFYNP~m~~---NRDlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~   97 (380)
T COG1867          23 SKRAPVFYNPAMEF---NRDLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR   97 (380)
T ss_pred             CCCCcceeCchhhh---ccchhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHH
Confidence            33456899999988   4544444444443221  789999999999999977754 54589999999999999999999


Q ss_pred             hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          103 LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      .|...  +......|+..++.                   .  ....||+|=.+| +.....+++.+.+.++.+|++.++
T Consensus        98 ~N~~~--~~~v~n~DAN~lm~-------------------~--~~~~fd~IDiDP-FGSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867          98 LNSGE--DAEVINKDANALLH-------------------E--LHRAFDVIDIDP-FGSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             hcCcc--cceeecchHHHHHH-------------------h--cCCCccEEecCC-CCCCchHHHHHHHHhhcCCEEEEE
Confidence            88333  44444456554432                   0  246899998777 666778999999999999999984

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.19  E-value=2.5e-05  Score=71.08  Aligned_cols=141  Identities=23%  Similarity=0.274  Sum_probs=96.3

Q ss_pred             CCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh-C----CCEEEEEeCChHHHHHHHHHHHhcCCCCCcee
Q 047371           40 GEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF-G----AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK  112 (222)
Q Consensus        40 ~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~-~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~  112 (222)
                      |++.|++.+.+++...+.  +..+|+|..||+|++.....+. +    ...++|.|+++.....|+.++..+++.. .+.
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~  244 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DAN  244 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-ccc
Confidence            778899999999988865  5679999999999887766543 1    3679999999999999999999988863 233


Q ss_pred             EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------------HHH
Q 047371          113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------------LPQ  164 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------------~~~  164 (222)
                      ....+...-+.     ...            -...++||.|++|||+..                            ...
T Consensus       245 i~~~dtl~~~~-----~~~------------~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  307 (489)
T COG0286         245 IRHGDTLSNPK-----HDD------------KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLA  307 (489)
T ss_pred             ccccccccCCc-----ccc------------cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHH
Confidence            33333211110     000            003467999999999851                            123


Q ss_pred             HHHHHHHcccCCeEEEEe---cCC--CCcHHHHHHHHHh
Q 047371          165 LADHIVSYAKPGAVVGIS---GIL--SEQLPRIINRYSE  198 (222)
Q Consensus       165 ~l~~~~~~LkpgG~l~~~---~~~--~~~~~~~~~~~~~  198 (222)
                      +++++...|+|||...+.   +..  ......+++.+-+
T Consensus       308 f~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~  346 (489)
T COG0286         308 FLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE  346 (489)
T ss_pred             HHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence            689999999998865542   222  2234555555544

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.18  E-value=2.8e-06  Score=75.83  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=68.6

Q ss_pred             ccccCCcchhHHHHHHHHhhhcCCC--cEEEEccCCCHHHHHHHHhCCCEEEEE---eCChHHHHHHHHHHHhcCCCCCc
Q 047371           36 AFGTGEHATTKLCLLLLQSLIKGGE--LFLDYGTGSGILGIAAIKFGAAMFVGV---DIDPQVIKSAHQNAALNNIGPKK  110 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~~~~~~--~vLD~G~G~G~~~~~la~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~  110 (222)
                      .|..|-..+.+.+.+++......|.  .+||+|||+|+++..|...+- .+..+   |..+.++..|.+    .|+.. -
T Consensus        93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa-~  166 (506)
T PF03141_consen   93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPA-M  166 (506)
T ss_pred             cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcch-h
Confidence            3433433444444444432223332  789999999999999887752 22222   333333433332    23320 1


Q ss_pred             eeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc-cH---HHHHHHHHHcccCCeEEEEecCCC
Q 047371          111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-PL---PQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-~~---~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                      +.  ......+++                      +++.||+|.|.-... +.   ..++-++.|+|+|||+++++..+.
T Consensus       167 ~~--~~~s~rLPf----------------------p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  167 IG--VLGSQRLPF----------------------PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hh--hhccccccC----------------------CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            11  111122222                      789999999855432 21   236788999999999999986654


Q ss_pred             C
Q 047371          187 E  187 (222)
Q Consensus       187 ~  187 (222)
                      .
T Consensus       223 ~  223 (506)
T PF03141_consen  223 Y  223 (506)
T ss_pred             c
Confidence            4

; GO: 0008168 methyltransferase activity

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.17  E-value=3.5e-05  Score=58.22  Aligned_cols=108  Identities=15%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             EEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-
Q 047371           83 MFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-  161 (222)
Q Consensus        83 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-  161 (222)
                      +|+|+|+.+.+++.+++++...++. .++++...+.+.+..                    +.+.+++|.++.|..+-+ 
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~--------------------~i~~~~v~~~iFNLGYLPg   59 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDE--------------------YIPEGPVDAAIFNLGYLPG   59 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGG--------------------T--S--EEEEEEEESB-CT
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHh--------------------hCccCCcCEEEEECCcCCC
Confidence            5899999999999999999988876 479998887765521                    123458999999987643 


Q ss_pred             -----------HHHHHHHHHHcccCCeEEEEecCCCCcH-HHHHHHHHhhhhcceecccCCceEe
Q 047371          162 -----------LPQLADHIVSYAKPGAVVGISGILSEQL-PRIINRYSEFLEDILVSEKDDWRCV  214 (222)
Q Consensus       162 -----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~  214 (222)
                                 ....++.+.+.|+|||.+.+........ .+-.+.+..+...+   ....|..+
T Consensus        60 gDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L---~~~~~~V~  121 (140)
T PF06962_consen   60 GDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL---DQKEFNVL  121 (140)
T ss_dssp             S-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS----TTTEEEE
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC---CcceEEEE
Confidence                       2346899999999999999875554333 33334444443222   34455543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.14  E-value=1.2e-05  Score=63.73  Aligned_cols=95  Identities=28%  Similarity=0.361  Sum_probs=71.0

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .|++|||+|+|+|..++..++.+...+++.|+.|......+-|++.|+.   .+.+...+...                 
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g-----------------  138 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG-----------------  138 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC-----------------
Confidence            4899999999999999999999999999999999999999999988885   45555444321                 


Q ss_pred             cccccCCCCCCCeeEEEecccccc--H-HHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNP--L-PQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~--~-~~~l~~~~~~LkpgG~l~~  181 (222)
                              .+..||+++....++.  . ..+++ ....++..|..++
T Consensus       139 --------~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         139 --------SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             --------CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence                    4567999998665543  2 23556 5555555555444

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.12  E-value=0.00013  Score=62.74  Aligned_cols=123  Identities=10%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-----CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE--EecCCcccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-----GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL--HLVPDRTFTASMNER  128 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~  128 (222)
                      +.++..++|+|||+|.-+..+.+.     ...+++++|+|..+++.+..++......  .+.+  .+++......-++. 
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~~~l~~l~~-  150 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYDDGLAWLKR-  150 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHHHHHhhccc-
Confidence            556779999999999876655431     2467999999999999999888733332  3444  44444321100000 


Q ss_pred             cccchhccccccccCCCCCCCeeEEEe-cccccc-----HHHHHHHHHH-cccCCeEEEEecCCCCcHHHHHHHH
Q 047371          129 VDGVVEYLSSHEIRGISETEEYDVVIA-NILLNP-----LPQLADHIVS-YAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~D~v~~-~~~~~~-----~~~~l~~~~~-~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                        +            . ......+++. ...+.+     ...++..+++ .|+|||.+++.--.......+..+|
T Consensus       151 --~------------~-~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY  210 (319)
T TIGR03439       151 --P------------E-NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY  210 (319)
T ss_pred             --c------------c-ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence              0            0 1122355554 223332     3457899999 9999999998533444455555554

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.12  E-value=2.1e-05  Score=67.78  Aligned_cols=170  Identities=18%  Similarity=0.257  Sum_probs=107.1

Q ss_pred             eeEEeCCCcccccCCcc--hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHH-
Q 047371           27 TNIILNPGLAFGTGEHA--TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAA-  102 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~--~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~-  102 (222)
                      ..+-+|-+..|.+....  ...++...+ +.++...++|-+|.|.|.-+..+.+++ ..+++-+|++|.+++.++.+.. 
T Consensus       257 ~rLYldG~LQfsTrDe~RYhEsLV~pal-s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl  335 (508)
T COG4262         257 LRLYLDGGLQFSTRDEYRYHESLVYPAL-SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL  335 (508)
T ss_pred             eEEEEcCceeeeechhhhhhheeeeccc-ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence            34557777777554332  222222222 223456789999999999999999986 7899999999999999985432 


Q ss_pred             ----hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--c------HHHHHHHHH
Q 047371          103 ----LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--P------LPQLADHIV  170 (222)
Q Consensus       103 ----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~------~~~~l~~~~  170 (222)
                          .+.++..++++...|+-++-.                   .  ..+.||++|.+.+=.  +      ..++...+.
T Consensus       336 r~~N~~sf~dpRv~Vv~dDAf~wlr-------------------~--a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~  394 (508)
T COG4262         336 RALNQGSFSDPRVTVVNDDAFQWLR-------------------T--AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLS  394 (508)
T ss_pred             hhhccCCccCCeeEEEeccHHHHHH-------------------h--hcccccEEEEeCCCCCCcchhhhhhHHHHHHHH
Confidence                333444667777776644321                   0  355899999865321  1      346788899


Q ss_pred             HcccCCeEEEEe-cC---CCCcHHHHHHHHHhh-hhc----ceecccCCceEeeccc
Q 047371          171 SYAKPGAVVGIS-GI---LSEQLPRIINRYSEF-LED----ILVSEKDDWRCVSGTK  218 (222)
Q Consensus       171 ~~LkpgG~l~~~-~~---~~~~~~~~~~~~~~~-~~~----~~~~~~~~w~~~~~~k  218 (222)
                      +.|+++|..++. +.   ..+-...+...+++. +..    ..+-..|+|--+...+
T Consensus       395 ~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~  451 (508)
T COG4262         395 RHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP  451 (508)
T ss_pred             HhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence            999999998883 21   122223333333332 222    2344678886665544

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.11  E-value=3.4e-06  Score=70.15  Aligned_cols=141  Identities=17%  Similarity=0.176  Sum_probs=77.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc-
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL-  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-  136 (222)
                      +|.++||+|||+-......+.....+|+..|..+...+..++-++..+.      +.+.....+.+.+++......|.+ 
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a------~DWs~~~~~v~~lEg~~~~~~e~e~  129 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGA------FDWSPFWKYVCELEGKREKWEEKEE  129 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--------THHHHHHHHHHTTSSSGHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCC------CCccHHHHHHHhccCCcchhhhHHH
Confidence            4668999999997665544545578899999999999888777654321      112111111111111100000000 


Q ss_pred             ----------cccccc--CCCC----CCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEecCC--------
Q 047371          137 ----------SSHEIR--GISE----TEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISGIL--------  185 (222)
Q Consensus       137 ----------~~~~~~--~~~~----~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~--------  185 (222)
                                .|+-.+  ++.+    ..+||+|++...++.       +...++++.++|||||++++.+..        
T Consensus       130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG  209 (256)
T PF01234_consen  130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG  209 (256)
T ss_dssp             HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred             HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence                      011111  1112    235999998766543       567899999999999999984332        


Q ss_pred             -------CCcHHHHHHHHHhh-hhcce
Q 047371          186 -------SEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       186 -------~~~~~~~~~~~~~~-~~~~~  204 (222)
                             .-+.+.+.+.+++. +....
T Consensus       210 ~~~F~~l~l~ee~v~~al~~aG~~i~~  236 (256)
T PF01234_consen  210 GHKFPCLPLNEEFVREALEEAGFDIED  236 (256)
T ss_dssp             TEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred             CEecccccCCHHHHHHHHHHcCCEEEe
Confidence                   34556777777765 44333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=6.4e-05  Score=64.93  Aligned_cols=127  Identities=13%  Similarity=0.128  Sum_probs=83.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh---C--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF---G--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~---~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      ++|+++|||+++.+|+-+..+.+.   .  .+.+++-|.++..+.....-+...+-  .++.....+...++...     
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~--~~~~v~~~~~~~~p~~~-----  225 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS--PNLLVTNHDASLFPNIY-----  225 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC--cceeeecccceeccccc-----
Confidence            679999999999999988766653   2  23899999999988888766644332  24444444443332100     


Q ss_pred             cchhccccccccCCC--CCCCeeEEEecccccc--------------------------HHHHHHHHHHcccCCeEEEEe
Q 047371          131 GVVEYLSSHEIRGIS--ETEEYDVVIANILLNP--------------------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~--~~~~~D~v~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                ..++-  ....||-|+++.|+..                          ...++....++||+||.++.+
T Consensus       226 ----------~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS  295 (375)
T KOG2198|consen  226 ----------LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS  295 (375)
T ss_pred             ----------cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence                      00010  3446999999887643                          224789999999999999987


Q ss_pred             cC---CCCcHHHHHHHHHhh
Q 047371          183 GI---LSEQLPRIINRYSEF  199 (222)
Q Consensus       183 ~~---~~~~~~~~~~~~~~~  199 (222)
                      +.   +.++..-+.+.++..
T Consensus       296 TCSLnpieNEaVV~~~L~~~  315 (375)
T KOG2198|consen  296 TCSLNPIENEAVVQEALQKV  315 (375)
T ss_pred             ccCCCchhhHHHHHHHHHHh
Confidence            44   334444455555444

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.08  E-value=0.00022  Score=57.61  Aligned_cols=127  Identities=19%  Similarity=0.176  Sum_probs=99.1

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .+..+..+++.+.+++|+||.-+++...+.+. ....+++.|+++..++.|.+++..+++. ++++...+|....     
T Consensus         6 RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~~-----   79 (226)
T COG2384           6 RLTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLAV-----   79 (226)
T ss_pred             HHHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCccc-----
Confidence            34556677888888999999999999998875 5678999999999999999999999987 6888888876332     


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccc-ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILL-NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                       +..+..+|+++...+- .-+.+++++-.+.|+.=-++++  -++.+...+++.+...
T Consensus        80 -----------------l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~~~  134 (226)
T COG2384          80 -----------------LELEDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLSAN  134 (226)
T ss_pred             -----------------cCccCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHHhC
Confidence                             2245578888875543 3367788888888876556666  3777888888888776

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.04  E-value=1.2e-05  Score=68.66  Aligned_cols=105  Identities=18%  Similarity=0.251  Sum_probs=77.8

Q ss_pred             hhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHH-------HHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           55 LIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIK-------SAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        55 ~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~-------~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ++++|+-|+|...|+|++....+..| +.|+|.||+-.++.       ..+.|++..+...--+.+...|.....     
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~-----  278 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP-----  278 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc-----
Confidence            37899999999999999999999997 68999999998877       235566666644222334444443322     


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecccccc------------------------------------HHHHHHHHHH
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------------------LPQLADHIVS  171 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------------------~~~~l~~~~~  171 (222)
                                      |..+-.||.|+|+||+..                                    +.+++.-.++
T Consensus       279 ----------------~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~  342 (421)
T KOG2671|consen  279 ----------------LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSR  342 (421)
T ss_pred             ----------------hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHh
Confidence                            224668999999999642                                    2346888899


Q ss_pred             cccCCeEEEE
Q 047371          172 YAKPGAVVGI  181 (222)
Q Consensus       172 ~LkpgG~l~~  181 (222)
                      .|..||++++
T Consensus       343 ~L~~ggrlv~  352 (421)
T KOG2671|consen  343 RLVDGGRLVF  352 (421)
T ss_pred             hhhcCceEEE
Confidence            9999999998

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.97  E-value=0.00018  Score=54.57  Aligned_cols=49  Identities=24%  Similarity=0.323  Sum_probs=43.0

Q ss_pred             cCCCcEEEEccCCCHHHHHHHH-----hCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           57 KGGELFLDYGTGSGILGIAAIK-----FGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      .+...|+|+|||.|+++..++.     .+..+|+|+|.++..++.+.++....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            4577999999999999999988     556799999999999999998887655

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.90  E-value=0.00012  Score=61.66  Aligned_cols=100  Identities=24%  Similarity=0.306  Sum_probs=65.4

Q ss_pred             CCcEEEEccCCC-HHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHH-hcCCCCCceeEEecCCcccccccccccccchh
Q 047371           59 GELFLDYGTGSG-ILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAA-LNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        59 ~~~vLD~G~G~G-~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|+=+|+|+= ..++.+++.  ....++++|+++.+++.+++.+. ..++. .++.+...|......           
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~-----------  188 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTY-----------  188 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-G-----------
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhcccc-----------
Confidence            359999999985 455566653  34679999999999999998877 55665 588898887754421           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccc----cHHHHHHHHHHcccCCeEEEE
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLN----PLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~LkpgG~l~~  181 (222)
                                 ....||+|+......    .-.+++.++.+.++||..+++
T Consensus       189 -----------dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  189 -----------DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             -----------G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             -----------ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence                       346799999887776    677899999999999999888

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.90  E-value=0.0005  Score=55.77  Aligned_cols=116  Identities=22%  Similarity=0.228  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371           44 TTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP  117 (222)
Q Consensus        44 ~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~  117 (222)
                      .+++...++..+    +++|.+||-+|+++|...-+++..  +.+.|+|+|.++......-..+...    .|+--...|
T Consensus        55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~D  130 (229)
T PF01269_consen   55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILED  130 (229)
T ss_dssp             T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-
T ss_pred             hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----Cceeeeecc
Confidence            344444444332    678999999999999988888874  3679999999997766655444332    266667777


Q ss_pred             CcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEEe
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~~  182 (222)
                      +.....     -..              --+.+|+|+++-.-....+ ++.++...||+||.++++
T Consensus       131 Ar~P~~-----Y~~--------------lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  131 ARHPEK-----YRM--------------LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             TTSGGG-----GTT--------------TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCChHH-----hhc--------------ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence            654311     001              1347999999876544444 567788899999999884

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.84  E-value=4.7e-05  Score=61.37  Aligned_cols=83  Identities=22%  Similarity=0.268  Sum_probs=64.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ....|+|..||.|..++..+..+ ..|+++|++|..+..|+.|+.-.|+. ++++|.++|...+-.++            
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~-~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld~~~~l------------  159 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQG-PYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLDLASKL------------  159 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhC-CeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHHHHHHH------------
Confidence            46789999999998888776664 68999999999999999999999998 49999999875442110            


Q ss_pred             cccccCCCCCCCeeEEEeccccc
Q 047371          138 SHEIRGISETEEYDVVIANILLN  160 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~  160 (222)
                            ......+|+++..+|..
T Consensus       160 ------q~~K~~~~~vf~sppwg  176 (263)
T KOG2730|consen  160 ------KADKIKYDCVFLSPPWG  176 (263)
T ss_pred             ------hhhhheeeeeecCCCCC
Confidence                  00233488999877754

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.81  E-value=9.1e-05  Score=55.80  Aligned_cols=55  Identities=18%  Similarity=0.271  Sum_probs=45.7

Q ss_pred             cEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371           61 LFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP  117 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~  117 (222)
                      +++|+|||.|.++..+++.+ ..+++++|.++.+++.+++++..+++.  ++.+....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~a   56 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAA   56 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEee
Confidence            48999999999999888764 348999999999999999999888764  56655544

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK10742 putative methyltransferase; Provisional

Probab=97.81  E-value=9.5e-05  Score=61.07  Aligned_cols=84  Identities=18%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             hcCCC--cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc------CC-CCCceeEEecCCcccccccc
Q 047371           56 IKGGE--LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN------NI-GPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        56 ~~~~~--~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~-~~~~v~~~~~~~~~~~~~~~  126 (222)
                      +++|.  +|||+.+|.|..++.++..|. +|+++|-++......+.++...      +. -..++++...+...+.    
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L----  158 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL----  158 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH----
Confidence            35677  899999999999999999975 5999999999999888888763      11 0135667776654442    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                                     ..  ....||+|+.+|+|.+
T Consensus       159 ---------------~~--~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        159 ---------------TD--ITPRPQVVYLDPMFPH  176 (250)
T ss_pred             ---------------hh--CCCCCcEEEECCCCCC
Confidence                           11  1236999999999976

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.79  E-value=6.8e-05  Score=65.54  Aligned_cols=104  Identities=22%  Similarity=0.178  Sum_probs=81.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++..++|+|||.|.....++....++++|+|.++..+.++........+.. ...+...+...-++            
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~~~~~~~~~~f------------  174 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNFVVADFGKMPF------------  174 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcceehhhhhcCCC------------
Confidence            45777899999999999999999887899999999999999888777666652 33344444433322            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                +++.||.+-+.....+   ....++++.+.+||||+.+..
T Consensus       175 ----------edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  175 ----------EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             ----------CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence                      6788999998665544   456899999999999999984

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.78  E-value=0.00068  Score=49.64  Aligned_cols=99  Identities=26%  Similarity=0.466  Sum_probs=64.0

Q ss_pred             EEEEccCCCHHHHHHHHhCC--CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc--cccccccccccchhccc
Q 047371           62 FLDYGTGSGILGIAAIKFGA--AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT--FTASMNERVDGVVEYLS  137 (222)
Q Consensus        62 vLD~G~G~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~  137 (222)
                      ++|+|||+|... .+.....  ..++|+|.++.++..++.........  .+.+...+...  ...              
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------  114 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG--LVDFVVADALGGVLPF--------------  114 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC--ceEEEEeccccCCCCC--------------
Confidence            999999999976 4444322  37899999999998855544321110  14455544432  111              


Q ss_pred             cccccCCCCC-CCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecCC
Q 047371          138 SHEIRGISET-EEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       138 ~~~~~~~~~~-~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              .. ..||++......++  ....+..+.+.++|+|.+++....
T Consensus       115 --------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         115 --------EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             --------CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence                    22 47999944443332  367899999999999999886443

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.75  E-value=0.00034  Score=60.32  Aligned_cols=87  Identities=16%  Similarity=0.270  Sum_probs=60.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .+|+++||+||++|.++..+.+.+. +|+|+|..+-.     ..+..    ..++.....+.-.+..             
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~----~~~V~h~~~d~fr~~p-------------  266 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMD----TGQVEHLRADGFKFRP-------------  266 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhC----CCCEEEEeccCcccCC-------------
Confidence            5789999999999999999999875 99999965411     11111    1366666665433210             


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG  176 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg  176 (222)
                               +.+.+|+++|+....+ ..+++.+.+.|..|
T Consensus       267 ---------~~~~vDwvVcDmve~P-~rva~lm~~Wl~~g  296 (357)
T PRK11760        267 ---------PRKNVDWLVCDMVEKP-ARVAELMAQWLVNG  296 (357)
T ss_pred             ---------CCCCCCEEEEecccCH-HHHHHHHHHHHhcC
Confidence                     2567999999987663 45666666666665

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.69  E-value=0.00029  Score=60.21  Aligned_cols=72  Identities=19%  Similarity=0.263  Sum_probs=49.9

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      ++.+.+..+ .+++..++|.-.|.|..+..+.+. +..+++|+|.++.+++.|++++...   ..++.+...+...+
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~~l   81 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFSNL   81 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GGGH
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHHHH
Confidence            344444444 457889999999999999988764 5689999999999999999877543   24788888776554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.67  E-value=0.00031  Score=60.38  Aligned_cols=93  Identities=14%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      ...+|+|.|.|.++..+.. .+.++-+++.+...+..++..+. .|+     ....+|.-+                   
T Consensus       179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~gV-----~~v~gdmfq-------------------  232 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PGV-----EHVAGDMFQ-------------------  232 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CCc-----ceecccccc-------------------
Confidence            6899999999999998887 45679999999998888877764 443     344444311                   


Q ss_pred             cccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371          140 EIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                            ...+-|+|++.-.+++     ..++++++.+.|+|+|.+++.+.
T Consensus       233 ------~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  233 ------DTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             ------cCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence                  1233579999888876     44689999999999999999654

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.65  E-value=0.0027  Score=53.76  Aligned_cols=75  Identities=20%  Similarity=0.202  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      .+-++.+.+..+ .+++...+|.--|.|..+..+.+. + .++++|+|.++.+++.|++.+...+   +++.++......
T Consensus         8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~   84 (314)
T COG0275           8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFAN   84 (314)
T ss_pred             cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHH
Confidence            444555666555 567789999999999999987765 2 4679999999999999999887644   477777776544


Q ss_pred             c
Q 047371          121 F  121 (222)
Q Consensus       121 ~  121 (222)
                      +
T Consensus        85 l   85 (314)
T COG0275          85 L   85 (314)
T ss_pred             H
Confidence            3

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.64  E-value=4.7e-05  Score=54.60  Aligned_cols=99  Identities=15%  Similarity=0.180  Sum_probs=43.1

Q ss_pred             EEEccCCCHHHHHHHHh----CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           63 LDYGTGSGILGIAAIKF----GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        63 LD~G~G~G~~~~~la~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      ||+|+..|..+..+++.    +..+++++|..+. .+.+++.++..++. .++++...+....-       ..+      
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l-------~~~------   65 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFL-------PSL------   65 (106)
T ss_dssp             --------------------------EEEESS-------------GGG--BTEEEEES-THHHH-------HHH------
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHH-------HHc------
Confidence            68999999888876652    2247999999996 33444444444544 47888888764331       111      


Q ss_pred             ccccCCCCCCCeeEEEeccc--cccHHHHHHHHHHcccCCeEEEEec
Q 047371          139 HEIRGISETEEYDVVIANIL--LNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +.+++|+++.+..  .......++.+...|+|||++++.+
T Consensus        66 -------~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   66 -------PDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -------HH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             -------CCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence                   2468999998763  3445567899999999999998753

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.64  E-value=6.9e-05  Score=62.61  Aligned_cols=114  Identities=16%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             cccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec
Q 047371           37 FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV  116 (222)
Q Consensus        37 f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~  116 (222)
                      |....+...-.+.+++... ..+..++|+|||+|-.+..   ++...++|+|++...+..+++.    +    .......
T Consensus        25 fs~tr~~~Wp~v~qfl~~~-~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~----~----~~~~~~a   92 (293)
T KOG1331|consen   25 FSATRAAPWPMVRQFLDSQ-PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS----G----GDNVCRA   92 (293)
T ss_pred             ccccccCccHHHHHHHhcc-CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC----C----Cceeehh
Confidence            4444555555566666554 3488999999999976542   3567899999999888777652    1    1124445


Q ss_pred             CCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH------HHHHHHHHHcccCCeEEEEecC
Q 047371          117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      |+...+.                      ...+||.+++...+||+      ..+++++.+.|+|||...+..+
T Consensus        93 d~l~~p~----------------------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen   93 DALKLPF----------------------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             hhhcCCC----------------------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            5444332                      67789999999989884      3479999999999999776433

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.63  E-value=0.00071  Score=54.57  Aligned_cols=104  Identities=15%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..+|.+||.+|-|-|.+.-.+.+.+..+-+.+|..|..++..+...-.   +.+++....+.-+...       ..+   
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~---ek~nViil~g~WeDvl-------~~L---  165 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR---EKENVIILEGRWEDVL-------NTL---  165 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc---cccceEEEecchHhhh-------ccc---
Confidence            357999999999999998888877666667889999999988876432   2246666555433221       112   


Q ss_pred             cccccccCCCCCCCeeEEEeccc---cccHHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANIL---LNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                +++.||=|+.+--   ++.+..+.+++.++|||+|++-+.
T Consensus       166 ----------~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  166 ----------PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             ----------cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence                      6777999997542   334566889999999999998763

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.57  E-value=0.00026  Score=57.14  Aligned_cols=54  Identities=28%  Similarity=0.477  Sum_probs=41.8

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHH
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQ   99 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~   99 (222)
                      ..++..+++....+|+.|||..||+|..+..+.+.+ .+.+|+|+++...+.|++
T Consensus       178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence            345555555557789999999999999999988886 689999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=97.56  E-value=0.00028  Score=59.79  Aligned_cols=56  Identities=25%  Similarity=0.329  Sum_probs=47.1

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      .++..+++..-.+|+.|||..+|+|..++++.+.+ .+.+|+|++++.++.|++++.
T Consensus       196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHH
Confidence            34444454556789999999999999999888886 789999999999999999975

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.47  E-value=0.0017  Score=54.77  Aligned_cols=116  Identities=22%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+.+|||+|+|+|.-+..+...  ...+++++|.|+.+++.++..+....-. .............              
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~--------------   97 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-RNAEWRRVLYRDF--------------   97 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-ccchhhhhhhccc--------------
Confidence            3569999999999755544432  3568999999999999998876532211 0110000000000              


Q ss_pred             cccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                               .+..+.|+|++...+.-     ...+++.+.+.+.+  ++++.+......-+....+.+.
T Consensus        98 ---------~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~  155 (274)
T PF09243_consen   98 ---------LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQ  155 (274)
T ss_pred             ---------ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHH
Confidence                     02233499998655432     33466777666655  8888766655544444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.0011  Score=50.41  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      .-+.+|+|.|.|.+....++.+....+|+|+++..+.+++-..-+.++. +...|...|.-.+                 
T Consensus        73 ~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-k~trf~RkdlwK~-----------------  134 (199)
T KOG4058|consen   73 KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-KSTRFRRKDLWKV-----------------  134 (199)
T ss_pred             CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-cchhhhhhhhhhc-----------------
Confidence            3579999999999999888887667899999999999999988888886 3555655554333                 


Q ss_pred             ccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          139 HEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                             ..+.|..++....-.-+.++-..+..-+..+..++..-++-.+ .+++....++
T Consensus       135 -------dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP~-w~leh~igeG  187 (199)
T KOG4058|consen  135 -------DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLPT-WQLEHAIGEG  187 (199)
T ss_pred             -------cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCCc-cchHhHhhcC
Confidence                   2334444444333333566667777777788777765443322 3444444444

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.44  E-value=0.0029  Score=53.17  Aligned_cols=135  Identities=18%  Similarity=0.159  Sum_probs=74.4

Q ss_pred             HHHHHHHhhhc------CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC--
Q 047371           47 LCLLLLQSLIK------GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD--  118 (222)
Q Consensus        47 ~~~~~l~~~~~------~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~--  118 (222)
                      .+.+.|.+..+      ...+||-.|||-|.++..++..|+ .+.|.|.|-.|+-.....+.. ..+...+++..--.  
T Consensus        39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~-~~~~~~~~I~Pf~~~~  116 (270)
T PF07942_consen   39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNH-CSQPNQFTIYPFVHSF  116 (270)
T ss_pred             HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcc-cCCCCcEEEecceecc
Confidence            34445555543      246899999999999999999986 789999999887665554321 11112232211000  


Q ss_pred             -------cccccccccccccch--hccccccc-----cC-CCC---CCCeeEEEecccccc---HHHHHHHHHHcccCCe
Q 047371          119 -------RTFTASMNERVDGVV--EYLSSHEI-----RG-ISE---TEEYDVVIANILLNP---LPQLADHIVSYAKPGA  177 (222)
Q Consensus       119 -------~~~~~~~~~~~~~~~--~~~~~~~~-----~~-~~~---~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG  177 (222)
                             +++..-..++..+..  ...+...|     .. +.+   .+.||+|+....++-   +-++++.+.++|||||
T Consensus       117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG  196 (270)
T PF07942_consen  117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG  196 (270)
T ss_pred             cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC
Confidence                   000000000000000  00000000     00 112   368999997655543   5568999999999999


Q ss_pred             EEEEec
Q 047371          178 VVGISG  183 (222)
Q Consensus       178 ~l~~~~  183 (222)
                      +.+=.+
T Consensus       197 ~WIN~G  202 (270)
T PF07942_consen  197 YWINFG  202 (270)
T ss_pred             EEEecC
Confidence            776533

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.43  E-value=0.00062  Score=55.45  Aligned_cols=104  Identities=25%  Similarity=0.235  Sum_probs=65.8

Q ss_pred             CCcchhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeE
Q 047371           40 GEHATTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKL  113 (222)
Q Consensus        40 ~~~~~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~  113 (222)
                      |...+-+-+.++|.+.    ..++.++||+|.|.-.+=-.+.. ......+|.|+++.++..|+.++..+ +++ ..++.
T Consensus        56 gRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~l  134 (292)
T COG3129          56 GRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRL  134 (292)
T ss_pred             ChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeE
Confidence            3333555556666544    23456889999887543222221 22368999999999999999999877 555 45665


Q ss_pred             EecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371          114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                      ....-....+      .+           .+...+.||+++||||+|.
T Consensus       135 r~qk~~~~if------~g-----------iig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         135 RRQKDSDAIF------NG-----------IIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             EeccCccccc------cc-----------cccccceeeeEecCCCcch
Confidence            5443221111      11           1224788999999999986

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.39  E-value=0.0022  Score=51.85  Aligned_cols=138  Identities=14%  Similarity=0.069  Sum_probs=83.9

Q ss_pred             chhHHHHHHHHhhhcC------CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec
Q 047371           43 ATTKLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV  116 (222)
Q Consensus        43 ~~~~~~~~~l~~~~~~------~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~  116 (222)
                      .+.+.+.++|......      ..++||+||=+.......  .+.-.|+.+|+++.          ..+       +...
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~----------~~~-------I~qq   90 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ----------HPG-------ILQQ   90 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCC----------CCC-------ceee
Confidence            3788888888776321      248999999876544432  23335999999871          122       2222


Q ss_pred             CCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH------HHHHHHHHHcccCCeE-----EEEecC-
Q 047371          117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------PQLADHIVSYAKPGAV-----VGISGI-  184 (222)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------~~~l~~~~~~LkpgG~-----l~~~~~-  184 (222)
                      |....+.                   +-.+.++||+|.+..+++..      .+++..+.+.|+|+|.     +++.-. 
T Consensus        91 DFm~rpl-------------------p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen   91 DFMERPL-------------------PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             ccccCCC-------------------CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            3222110                   00146789999998887763      4589999999999999     777422 


Q ss_pred             ------CCCcHHHHHHHHHhh-hhcceecccCCceEeeccc
Q 047371          185 ------LSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTK  218 (222)
Q Consensus       185 ------~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k  218 (222)
                            ..-..+.+.+.+... |..+.......-.+..++|
T Consensus       152 ~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~  192 (219)
T PF11968_consen  152 PCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK  192 (219)
T ss_pred             hHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence                  123345555555553 6666555554444444443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.38  E-value=0.00096  Score=53.32  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      .-.+.|+|||-|.+++.++.. +...++|.||-...-++.++++....
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR  108 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR  108 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence            347999999999999998864 77789999999988888888886544

>PRK13699 putative methylase; Provisional

Probab=97.38  E-value=0.0008  Score=55.25  Aligned_cols=57  Identities=25%  Similarity=0.345  Sum_probs=47.3

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      .++..++.....+|+.|||..||+|..+..+.+.+ .+.+|+|+++...+.|.+++..
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHH
Confidence            34445555556789999999999999999888876 6899999999999999888764

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.0061  Score=48.78  Aligned_cols=115  Identities=24%  Similarity=0.285  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           44 TTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        44 ~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      .+++...+|..+    +++|++||=+|+.+|...-+++.. +.+.++|+|.++......-..+...    .|+--...|+
T Consensus        58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA  133 (231)
T COG1889          58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDA  133 (231)
T ss_pred             hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeeccc
Confidence            445555555433    678999999999999988888775 5678999999998876655544332    2555566665


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEE
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGI  181 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~  181 (222)
                      ....     .-..              --+.+|+|+.+-.-....+ ++.++...||+||++++
T Consensus       134 ~~P~-----~Y~~--------------~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         134 RKPE-----KYRH--------------LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             CCcH-----Hhhh--------------hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            4331     0011              1345899998765544444 57888999999998776

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.34  E-value=0.022  Score=46.89  Aligned_cols=98  Identities=17%  Similarity=0.113  Sum_probs=57.6

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .|++||=+|=+.- .++.++. ....+|+.+|+++..++..++.+...++.   ++....|....-.   +         
T Consensus        44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---i~~~~~DlR~~LP---~---------  107 (243)
T PF01861_consen   44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---IEAVHYDLRDPLP---E---------  107 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS------T---------
T ss_pred             cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---eEEEEecccccCC---H---------
Confidence            5889998874432 3333332 34579999999999999999999888873   6676666543210   0         


Q ss_pred             ccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVV  179 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l  179 (222)
                              .-.++||+++.+||+..  +.-++......||..|..
T Consensus       108 --------~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~  144 (243)
T PF01861_consen  108 --------ELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCA  144 (243)
T ss_dssp             --------TTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-E
T ss_pred             --------HHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCce
Confidence                    02578999999999874  556788999999988843

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.33  E-value=0.0024  Score=57.26  Aligned_cols=105  Identities=17%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             hhcCCC-cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           55 LIKGGE-LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        55 ~~~~~~-~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++-. +++-+|||+-.++..+-..++..|+-+|+|+-.++.+.....   .....+.+...+.....+          
T Consensus        44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~---~~~~~~~~~~~d~~~l~f----------  110 (482)
T KOG2352|consen   44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA---KERPEMQMVEMDMDQLVF----------  110 (482)
T ss_pred             hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc---cCCcceEEEEecchhccC----------
Confidence            355666 999999999999999988889999999999998888765432   222345666666665544          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------------HHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  ++++||+++.-+.++.             ..+.+.++++.+++||..+...+
T Consensus       111 ------------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  111 ------------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             ------------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence                        7888999998665543             33468999999999999776444

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.26  E-value=0.004  Score=50.13  Aligned_cols=107  Identities=17%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHH----h-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIK----F-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~----~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +++.|+|+|.-.|..++.+|.    . +.++|+|+|++....+...  ...+++. +++++..++.....     .+..+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~-~rI~~i~Gds~d~~-----~~~~v  103 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMS-PRITFIQGDSIDPE-----IVDQV  103 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG-----TTEEEEES-SSSTH-----HHHTS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcccc-CceEEEECCCCCHH-----HHHHH
Confidence            588999999999988887664    2 5689999999765443322  2234443 58999998875442     11111


Q ss_pred             hhccccccccCCCCCCCeeEEEecc--ccccHHHHHHHHHHcccCCeEEEE
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANI--LLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~--~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                               ........-.+|+.+.  ...+....++....++++|+++++
T Consensus       104 ---------~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV  145 (206)
T PF04989_consen  104 ---------RELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV  145 (206)
T ss_dssp             ---------GSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred             ---------HHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence                     1111233445666543  234566778889999999999998

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PHA01634 hypothetical protein

Probab=97.25  E-value=0.0017  Score=48.16  Aligned_cols=49  Identities=18%  Similarity=0.131  Sum_probs=44.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCC
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI  106 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~  106 (222)
                      .+++|+|+|++-|..++..+..|+..|+++|.++...+..+.+++.+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            5899999999999999999888999999999999999999998876654

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.00054  Score=52.85  Aligned_cols=122  Identities=15%  Similarity=0.178  Sum_probs=75.9

Q ss_pred             CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .|.+|+++|.|- |.-++++|.. +...|...|-++..++..++....+-.+  ..+-  ..+.....  ..        
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s--~~ts--c~vlrw~~--~~--------   94 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS--SLTS--CCVLRWLI--WG--------   94 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc--ccce--ehhhHHHH--hh--------
Confidence            378999999996 5556666654 6678999999999999998876544222  1111  11100000  00        


Q ss_pred             cccccccCCCCCCCeeEEEecccc---ccHHHHHHHHHHcccCCeEEEEecC-CCCcHHHHHHHHHh
Q 047371          136 LSSHEIRGISETEEYDVVIANILL---NPLPQLADHIVSYAKPGAVVGISGI-LSEQLPRIINRYSE  198 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~  198 (222)
                           .+.......||+|++....   ++-..+++.+.++|+|.|..++... ...+..++.+....
T Consensus        95 -----aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~  156 (201)
T KOG3201|consen   95 -----AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGT  156 (201)
T ss_pred             -----hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHh
Confidence                 0111245689999985433   2245689999999999999777433 34444555554443

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.14  E-value=0.0025  Score=51.97  Aligned_cols=122  Identities=13%  Similarity=0.158  Sum_probs=80.1

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--C----C----CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--G----A----AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--~----~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      ..-++++|+++..|+++..+.+.  .    .    ..|+++|+.+           ...+.  .+.-..+|.+.... .+
T Consensus        40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~--GV~qlq~DIT~~st-ae  105 (294)
T KOG1099|consen   40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIE--GVIQLQGDITSAST-AE  105 (294)
T ss_pred             hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccC--ceEEeecccCCHhH-HH
Confidence            44578999999999999998863  1    1    2399999977           23443  55566666655421 11


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccc-----ccHH---------HHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILL-----NPLP---------QLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-----~~~~---------~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                      .....+             ...+.|+|+|+..-     |.+.         ..+.....+|||||.++-.-+......-+
T Consensus       106 ~Ii~hf-------------ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL  172 (294)
T KOG1099|consen  106 AIIEHF-------------GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL  172 (294)
T ss_pred             HHHHHh-------------CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence            111111             45689999997653     3322         24677889999999999876776666666


Q ss_pred             HHHHHhhhhccee
Q 047371          193 INRYSEFLEDILV  205 (222)
Q Consensus       193 ~~~~~~~~~~~~~  205 (222)
                      -..++.+|..+..
T Consensus       173 ysql~~ff~kv~~  185 (294)
T KOG1099|consen  173 YSQLRKFFKKVTC  185 (294)
T ss_pred             HHHHHHHhhceee
Confidence            6666666655544

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.12  E-value=0.00013  Score=58.49  Aligned_cols=89  Identities=15%  Similarity=0.161  Sum_probs=62.2

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      +.++||+|+|.|.++..++.. ..+|++.|+|..|..+.++.    +.   +  +. ...+..                 
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y---n--Vl-~~~ew~-----------------  164 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY---N--VL-TEIEWL-----------------  164 (288)
T ss_pred             CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC---c--ee-eehhhh-----------------
Confidence            468999999999999988755 46799999999998887653    11   1  11 001111                 


Q ss_pred             ccccCCCCCCCeeEEEeccccc---cHHHHHHHHHHcccC-CeEEEE
Q 047371          139 HEIRGISETEEYDVVIANILLN---PLPQLADHIVSYAKP-GAVVGI  181 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lkp-gG~l~~  181 (222)
                            ..+-++|+|.|-..++   ..-.+++.++..|+| .|.+++
T Consensus       165 ------~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv  205 (288)
T KOG3987|consen  165 ------QTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV  205 (288)
T ss_pred             ------hcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence                  1345799999844332   244689999999999 788776

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.03  E-value=0.0015  Score=57.73  Aligned_cols=60  Identities=23%  Similarity=0.381  Sum_probs=53.0

Q ss_pred             cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .+||+|+|+|.+++++++.+...++++|.-..|.+.|++....+|.+ ++++++....+..
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInkrStev  128 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINKRSTEV  128 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeecccccee
Confidence            58999999999999999998889999999999999999999999998 5888776655443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.92  E-value=0.0033  Score=54.92  Aligned_cols=106  Identities=23%  Similarity=0.352  Sum_probs=70.0

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++.+|+-+|||+ |.++..+++. +..+|+++|.++..++.|++......+.     ....+  ...    ...     
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~-----~~~~~--~~~----~~~-----  230 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV-----NPSED--DAG----AEI-----  230 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee-----cCccc--cHH----HHH-----
Confidence            3455899999998 8887777764 7889999999999999998843221110     10000  000    000     


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQ  188 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (222)
                             ........+|+++-...   ....+..+.++++|+|.+.+.+.....
T Consensus       231 -------~~~t~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         231 -------LELTGGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             -------HHHhCCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence                   00112236999997544   456788999999999999997766544

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.90  E-value=0.0005  Score=57.95  Aligned_cols=97  Identities=20%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             cCCCcEEEEccCCCHHHH-HHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGI-AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~-~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      -.+..|+|+-+|-|++++ .+...+++.|+++|.+|..++..+.++..+++. ++.....++-...              
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-~r~~i~~gd~R~~--------------  257 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-DRCRITEGDNRNP--------------  257 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-HHHHhhhcccccc--------------
Confidence            357899999999999999 788889999999999999999999999887665 2333333332221              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeE
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAV  178 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~  178 (222)
                               .+....|-|.....-. -++-=..+.++|||.|.
T Consensus       258 ---------~~~~~AdrVnLGLlPS-se~~W~~A~k~Lk~egg  290 (351)
T KOG1227|consen  258 ---------KPRLRADRVNLGLLPS-SEQGWPTAIKALKPEGG  290 (351)
T ss_pred             ---------Cccccchheeeccccc-cccchHHHHHHhhhcCC
Confidence                     1566677776543211 12222335667777765

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.88  E-value=0.008  Score=52.07  Aligned_cols=98  Identities=15%  Similarity=0.208  Sum_probs=68.1

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++||++|+-.|+|. |.+++.+++.-..+|+++|.++..++.|++.-..       ..+...+.+...        .   
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~--------~---  225 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALE--------A---  225 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhH--------H---
Confidence            67899999999992 3677777774238999999999999999875322       112211221110        0   


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                 -.+.||+++...+    ...++...+.|+++|.+++.+...
T Consensus       226 -----------~~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         226 -----------VKEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             -----------hHhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCCC
Confidence                       1223999997664    466788889999999999977663

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.86  E-value=0.00094  Score=59.77  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=80.7

Q ss_pred             CCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +.+|||.-+++|.-++..++.  +..++++.|.++.+++..+.|+..++.. +.+.....|+..++..            
T Consensus       110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~lM~~------------  176 (525)
T KOG1253|consen  110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVLMYE------------  176 (525)
T ss_pred             cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHHHHh------------
Confidence            457999999999988877753  4578999999999999999999888765 4556666665544321            


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                            .......||+|-.+| +.....+++.+.+.++.||.+.++
T Consensus       177 ------~~~~~~~FDvIDLDP-yGs~s~FLDsAvqav~~gGLL~vT  215 (525)
T KOG1253|consen  177 ------HPMVAKFFDVIDLDP-YGSPSPFLDSAVQAVRDGGLLCVT  215 (525)
T ss_pred             ------ccccccccceEecCC-CCCccHHHHHHHHHhhcCCEEEEE
Confidence                  111357899999876 555678999999999999999984

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.82  E-value=0.0035  Score=50.62  Aligned_cols=59  Identities=25%  Similarity=0.264  Sum_probs=41.7

Q ss_pred             hHHHHHHHHhh---h--cCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           45 TKLCLLLLQSL---I--KGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        45 ~~~~~~~l~~~---~--~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      .++..+++++-   .  ..+-+++|.+||+|++.-.+.-.   ...+|+|.|+++.+++.|++|+..
T Consensus        33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L   99 (246)
T PF11599_consen   33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL   99 (246)
T ss_dssp             HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence            35556666544   2  12358999999999987776643   246899999999999999999863

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.81  E-value=0.01  Score=50.14  Aligned_cols=108  Identities=23%  Similarity=0.256  Sum_probs=79.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +...+.++-+|.|.|.+....++++ ..++.-+|++...++..++....  .+.+.+++....+|.-.+.       ..+
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl-------~~~  191 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL-------EDL  191 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH-------HHh
Confidence            3457889999999999988777653 46899999999999999988763  4455567878777654331       111


Q ss_pred             hhccccccccCCCCCCCeeEEEec--ccccc-----HHHHHHHHHHcccCCeEEEEec
Q 047371          133 VEYLSSHEIRGISETEEYDVVIAN--ILLNP-----LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~--~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                   +.++||+|+..  .|..+     ...+.+.+.+.||++|++++..
T Consensus       192 -------------~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  192 -------------KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             -------------ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence                         57889999963  23332     3457899999999999999853

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.79  E-value=0.04  Score=46.16  Aligned_cols=114  Identities=22%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             CcEEEEccCCC--HHHHHHHH--hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc-cccccchh
Q 047371           60 ELFLDYGTGSG--ILGIAAIK--FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN-ERVDGVVE  134 (222)
Q Consensus        60 ~~vLD~G~G~G--~~~~~la~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~  134 (222)
                      ..+||+|||-=  ...-.+++  .+.++|+-+|.+|-.+..++..+..+.-  .+..++..|......=+. .....++|
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            47999999952  23333443  4778999999999999999887765431  247788888755421000 01112222


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEecCCCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGISGILSE  187 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (222)
                                 .++++-+++ ...+++      ...++..+...|.||.++.++....+
T Consensus       148 -----------~~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  148 -----------FDRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             -----------TTS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             -----------CCCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence                       244554444 444444      45689999999999999999866544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.76  E-value=0.0086  Score=51.22  Aligned_cols=106  Identities=19%  Similarity=0.201  Sum_probs=68.0

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|.++|-+|+|+ |..+...|+ .+..+|+.+|+++..++.|++ +   |..  .+....... ..     +...+++
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~--~~~~~~~~~-~~-----~~~~~~v  234 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT--VTDPSSHKS-SP-----QELAELV  234 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe--EEeeccccc-cH-----HHHHHHH
Confidence            77899999999998 777776666 488999999999999999998 3   321  111111100 00     1111111


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      +        ..-....+|+.+.-.   .....++.+...+++||.+++.+.
T Consensus       235 ~--------~~~g~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  235 E--------KALGKKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             H--------hhccccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEecc
Confidence            1        000223488888633   344667778889999999888654

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=96.75  E-value=0.023  Score=52.02  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=79.3

Q ss_pred             cCCcchhHHHHHHHHhhhc----CCCcEEEEccCCCHHHHHHHHh---C--CCEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 047371           39 TGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKF---G--AAMFVGVDIDPQVIKSAHQNAALNNIGPK  109 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~----~~~~vLD~G~G~G~~~~~la~~---~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~  109 (222)
                      .|...+++.+.+++...+.    ++..+.|..||+|.+.....+.   +  ..+++|.+..+.+...++.++..++...+
T Consensus       194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~  273 (501)
T TIGR00497       194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA  273 (501)
T ss_pred             CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence            4455677777777766532    4578999999999987754431   1  25699999999999999998876665422


Q ss_pred             ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------------
Q 047371          110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------------  161 (222)
Q Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------------  161 (222)
                      .......+...-                    ..+....+||++++|||+..                            
T Consensus       274 t~~~~~~dtl~~--------------------~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~  333 (501)
T TIGR00497       274 NFNIINADTLTT--------------------KEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKA  333 (501)
T ss_pred             ccCcccCCcCCC--------------------ccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchh
Confidence            222222221110                    00113456899888887521                            


Q ss_pred             HHHHHHHHHHcccCCeEEEE
Q 047371          162 LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~  181 (222)
                      -..++.++...|++||...+
T Consensus       334 ~~afi~h~~~~L~~gG~~ai  353 (501)
T TIGR00497       334 DLAFVLHALYVLGQEGTAAI  353 (501)
T ss_pred             hHHHHHHHHHhcCCCCeEEE
Confidence            01257888899999997554

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.72  E-value=0.0057  Score=51.62  Aligned_cols=72  Identities=15%  Similarity=0.163  Sum_probs=52.7

Q ss_pred             cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371           61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE  140 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (222)
                      +++|++||.|.++.-+.+.+...+.++|+++.+++..+.|....        ....|...+...                
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~--------~~~~Di~~~~~~----------------   57 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK--------LIEGDITKIDEK----------------   57 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC--------CccCccccCchh----------------
Confidence            68999999999988888778888999999999998888765321        233444333110                


Q ss_pred             ccCCCC-CCCeeEEEecccccc
Q 047371          141 IRGISE-TEEYDVVIANILLNP  161 (222)
Q Consensus       141 ~~~~~~-~~~~D~v~~~~~~~~  161 (222)
                           . ...+|+++..+|+..
T Consensus        58 -----~~~~~~D~l~~gpPCq~   74 (275)
T cd00315          58 -----DFIPDIDLLTGGFPCQP   74 (275)
T ss_pred             -----hcCCCCCEEEeCCCChh
Confidence                 1 346999999998754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.49  E-value=0.0027  Score=57.18  Aligned_cols=93  Identities=16%  Similarity=0.143  Sum_probs=59.3

Q ss_pred             cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371           61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE  140 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (222)
                      .|+|+.+|.|.++..|...+   |..+..-|..-...-..+...|+-  .+-..++..  |..                 
T Consensus       368 NVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLI--G~yhDWCE~--fsT-----------------  423 (506)
T PF03141_consen  368 NVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLI--GVYHDWCEA--FST-----------------  423 (506)
T ss_pred             eeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccc--hhccchhhc--cCC-----------------
Confidence            69999999999999987654   455554443111111122233332  111122211  111                 


Q ss_pred             ccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEe
Q 047371          141 IRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       141 ~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                           -..+||++.++..+..      +.+++-++-|+|+|||.+++-
T Consensus       424 -----YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR  466 (506)
T PF03141_consen  424 -----YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR  466 (506)
T ss_pred             -----CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence                 4778999999887765      456899999999999999995

; GO: 0008168 methyltransferase activity

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=96.42  E-value=0.069  Score=44.41  Aligned_cols=139  Identities=10%  Similarity=0.029  Sum_probs=78.2

Q ss_pred             CcEEEEccCCCHHHHHHHH----h--CCCEEEEEeCCh--------------------------HHHHHHHHHHHhcCCC
Q 047371           60 ELFLDYGTGSGILGIAAIK----F--GAAMFVGVDIDP--------------------------QVIKSAHQNAALNNIG  107 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~----~--~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~~~  107 (222)
                      -.|+|.||-.|..++.++.    +  ...++++.|.-.                          ..++..++++...++.
T Consensus        76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~  155 (248)
T PF05711_consen   76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL  155 (248)
T ss_dssp             SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred             eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence            3699999999987665432    2  245688887533                          1345555565555554


Q ss_pred             CCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecc-ccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371          108 PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANI-LLNPLPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       108 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                      .+++.++.+.......       .             .+..++-++.++. .+.+....|+.++..|.|||++++.+...
T Consensus       156 ~~~v~~vkG~F~dTLp-------~-------------~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  156 DDNVRFVKGWFPDTLP-------D-------------APIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             STTEEEEES-HHHHCC-------C--------------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             cccEEEECCcchhhhc-------c-------------CCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            4577777665432210       0             1445666666643 34456678999999999999999987766


Q ss_pred             CcHHHHHHHHHhhhhcceecccCCceEeeccc
Q 047371          187 EQLPRIINRYSEFLEDILVSEKDDWRCVSGTK  218 (222)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k  218 (222)
                      ...++..+.+............=+|.++.++|
T Consensus       216 ~gcr~AvdeF~~~~gi~~~l~~id~~~v~w~k  247 (248)
T PF05711_consen  216 PGCRKAVDEFRAEHGITDPLHPIDWTGVYWRK  247 (248)
T ss_dssp             HHHHHHHHHHHHHTT--S--EE-SSS-EEEE-
T ss_pred             hHHHHHHHHHHHHcCCCCccEEecCceEEEec
Confidence            66666666665554444455556677776665

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.39  E-value=0.024  Score=46.88  Aligned_cols=81  Identities=20%  Similarity=0.159  Sum_probs=53.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++..+|+|+|||---++..+... +...++|.|++..+++.....+...+..   .++...|...-          .  
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~---~~~~v~Dl~~~----------~--  167 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP---HDARVRDLLSD----------P--  167 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C---EEEEEE-TTTS----------H--
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC---cceeEeeeecc----------C--
Confidence            445789999999999888866544 4569999999999999999888777753   44444443211          1  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL  162 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~  162 (222)
                                 +....|+.+.-=.++.+
T Consensus       168 -----------~~~~~DlaLllK~lp~l  184 (251)
T PF07091_consen  168 -----------PKEPADLALLLKTLPCL  184 (251)
T ss_dssp             -----------TTSEESEEEEET-HHHH
T ss_pred             -----------CCCCcchhhHHHHHHHH
Confidence                       56678999975444433

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.28  E-value=0.0032  Score=55.54  Aligned_cols=69  Identities=30%  Similarity=0.475  Sum_probs=60.0

Q ss_pred             HHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           52 LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        52 l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +..+.++|..|.|++||.|-+++.++..+ +.|++.|+++++++..+.+++.+.+...++.....|+..+
T Consensus       243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  243 LSGLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             HhhccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            33457899999999999999999998876 8999999999999999999998888766688888877554

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.11  E-value=0.061  Score=44.62  Aligned_cols=116  Identities=16%  Similarity=0.135  Sum_probs=66.9

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC----CceeEE---ecCCccccccccccccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP----KKIKLH---LVPDRTFTASMNERVDG  131 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~v~~~---~~~~~~~~~~~~~~~~~  131 (222)
                      ...||++|+|+|-.++.++.....+|+..|.... +...+.+...++...    ..+...   ++......        -
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~--------~  157 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVS--------F  157 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHh--------h
Confidence            4569999999998888888766688888888553 333333322222111    122222   22222111        0


Q ss_pred             chhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCC-cHHHHHHHH
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSE-QLPRIINRY  196 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~  196 (222)
                      +             ...++|+|++..+++.   ...+...+..+|..+|.+++...... ...+....+
T Consensus       158 ~-------------~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~  213 (248)
T KOG2793|consen  158 R-------------LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLL  213 (248)
T ss_pred             c-------------cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHH
Confidence            1             1222899998666543   56778888888899997666544433 333443333

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.98  E-value=0.025  Score=46.49  Aligned_cols=83  Identities=17%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             cCCC--cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh--cCCC-----CCceeEEecCCccccccccc
Q 047371           57 KGGE--LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL--NNIG-----PKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        57 ~~~~--~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~-----~~~v~~~~~~~~~~~~~~~~  127 (222)
                      +++.  +|||.-+|-|.=++.++..| ++|+++|-||......+..+..  ..-.     ..++++...|...+..    
T Consensus        72 k~~~~~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----  146 (234)
T PF04445_consen   72 KPGMRPSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----  146 (234)
T ss_dssp             BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----
T ss_pred             CCCCCCEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----
Confidence            4553  89999999999999888887 5899999999765555443321  1111     1368888888765421    


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                                       .+.++||+|..+|++..
T Consensus       147 -----------------~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  147 -----------------QPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             -----------------CHSS--SEEEE--S---
T ss_pred             -----------------hcCCCCCEEEECCCCCC
Confidence                             15788999999999865

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.98  E-value=0.025  Score=45.12  Aligned_cols=34  Identities=15%  Similarity=0.066  Sum_probs=26.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeC
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDI   89 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~   89 (222)
                      +++|.+|+|+-.|.|.++..++..  +.+.|++.--
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p   81 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVP   81 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecc
Confidence            678999999999999999988864  2345555433

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.91  E-value=0.061  Score=45.75  Aligned_cols=72  Identities=17%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371           61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE  140 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (222)
                      +++|+.||.|.++.-+.+.+...+.++|+++.+.+..+.|..         .....|...+...      .+        
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~---------~~~~~Di~~~~~~------~l--------   58 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP---------EVICGDITEIDPS------DL--------   58 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT---------EEEESHGGGCHHH------HH--------
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc---------ccccccccccccc------cc--------
Confidence            689999999999998888888889999999998888888764         3455555444210      11        


Q ss_pred             ccCCCCCCCeeEEEecccccc
Q 047371          141 IRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       141 ~~~~~~~~~~D~v~~~~~~~~  161 (222)
                           +. .+|+++..+|+..
T Consensus        59 -----~~-~~D~l~ggpPCQ~   73 (335)
T PF00145_consen   59 -----PK-DVDLLIGGPPCQG   73 (335)
T ss_dssp             -----HH-T-SEEEEE---TT
T ss_pred             -----cc-cceEEEeccCCce
Confidence                 22 4899999988754

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.85  E-value=0.052  Score=44.73  Aligned_cols=100  Identities=20%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHH----HHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQV----IKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~----l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      ++||.+||=+|+++|...-+....  +..-|+++|.++..    +..|+++        .|+--+..|+.....  ..- 
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--------tNiiPIiEDArhP~K--YRm-  222 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--------TNIIPIIEDARHPAK--YRM-  222 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--------CCceeeeccCCCchh--eee-
Confidence            789999999999999877776654  55789999999864    3444433        244445555533210  000 


Q ss_pred             ccchhccccccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEEe
Q 047371          130 DGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~~  182 (222)
                                      .-.-+|+|+++.+-..... ++-++...||+||.++++
T Consensus       223 ----------------lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  223 ----------------LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             ----------------eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence                            1235899998765444333 456788899999999984

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.59  E-value=0.09  Score=44.96  Aligned_cols=136  Identities=17%  Similarity=0.162  Sum_probs=70.9

Q ss_pred             HHHHHHHHhhhcC------CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE---ec
Q 047371           46 KLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH---LV  116 (222)
Q Consensus        46 ~~~~~~l~~~~~~------~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~---~~  116 (222)
                      .-+.+-|..+.++      .-+||-.|||.|.++..++..+. ++-|-|.|--|+--....+..-..+ ..+.++   ..
T Consensus       132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~-nq~~IYPfIh~  209 (369)
T KOG2798|consen  132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQE-NQFTIYPFIHQ  209 (369)
T ss_pred             hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccC-CcEEEEeeeec
Confidence            3344555555544      44799999999999999999875 4567788777765444333211111 122211   11


Q ss_pred             CC------cccc-ccccccc-----ccchhccccc-cccCCC----CCCCeeEEEeccccc---cHHHHHHHHHHcccCC
Q 047371          117 PD------RTFT-ASMNERV-----DGVVEYLSSH-EIRGIS----ETEEYDVVIANILLN---PLPQLADHIVSYAKPG  176 (222)
Q Consensus       117 ~~------~~~~-~~~~~~~-----~~~~~~~~~~-~~~~~~----~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lkpg  176 (222)
                      -.      ++++ .+.++..     -..--++-|. ++..+-    ..+.+|+|+....++   .+-++++.+.++||||
T Consensus       210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G  289 (369)
T KOG2798|consen  210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPG  289 (369)
T ss_pred             cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence            00      1110 0000000     0000000010 000011    234699998765543   3567899999999999


Q ss_pred             eEEEEec
Q 047371          177 AVVGISG  183 (222)
Q Consensus       177 G~l~~~~  183 (222)
                      |+.+=.+
T Consensus       290 GvWiNlG  296 (369)
T KOG2798|consen  290 GVWINLG  296 (369)
T ss_pred             cEEEecc
Confidence            9987633

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.48  E-value=0.12  Score=44.65  Aligned_cols=99  Identities=23%  Similarity=0.290  Sum_probs=60.5

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++++||-.|||. |..+..+++. +..+++++|.++..++.+++.    |..  . .+...+ ..+        ... 
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~--~-vi~~~~-~~~--------~~~-  229 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GAD--K-LVNPQN-DDL--------DHY-  229 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCc--E-EecCCc-ccH--------HHH-
Confidence            34688999888764 4555566664 555799999999988887652    321  1 111110 001        000 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              .  ...+.+|+++....-   ...++.+.++++++|.+++.+.
T Consensus       230 --------~--~~~g~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        230 --------K--AEKGYFDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             --------h--ccCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence                    0  012358999864322   3467778889999999998654

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.46  E-value=0.12  Score=44.58  Aligned_cols=94  Identities=14%  Similarity=0.229  Sum_probs=60.3

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH--hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK--FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +++|++||-+|||. |..+..+++  .+..+++++|.++..++.++.    .+.    . .. .+  .+.          
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~----~-~~-~~--~~~----------  218 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE----T-YL-ID--DIP----------  218 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc----e-ee-hh--hhh----------
Confidence            46789999999865 455555554  345689999999988887764    121    0 10 00  010          


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                   ....+|+++-...-......++...++++++|.+++.+.
T Consensus       219 -------------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         219 -------------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             -------------hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence                         122489998644321134578888999999999988654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.08  E-value=0.24  Score=45.50  Aligned_cols=116  Identities=20%  Similarity=0.287  Sum_probs=64.7

Q ss_pred             CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc-cccccccchh
Q 047371           58 GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS-MNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~  134 (222)
                      ++.+|+-+|||. |..++..++. | +.|+++|.+++.++.++..    |..  .+.+...+....... ......+..+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl----GA~--~v~i~~~e~~~~~~gya~~~s~~~~~  236 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM----GAE--FLELDFEEEGGSGDGYAKVMSEEFIK  236 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc----CCe--EEEeccccccccccchhhhcchhHHH
Confidence            688999999998 7777776665 6 4899999999999988762    321  111111110000000 0000000000


Q ss_pred             ccccccccCCC-CCCCeeEEEecccccc--HHHH-HHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGIS-ETEEYDVVIANILLNP--LPQL-ADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~-~~~~~D~v~~~~~~~~--~~~~-l~~~~~~LkpgG~l~~~~~  184 (222)
                      ..    ...+. ..+.+|+++.......  -..+ .+++.+.+||||.++....
T Consensus       237 ~~----~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        237 AE----MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HH----HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            00    00000 1246999997554422  1234 5999999999999887544

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.99  E-value=0.084  Score=46.45  Aligned_cols=106  Identities=22%  Similarity=0.396  Sum_probs=64.6

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.++.+||..|||. |..+..+++. +..+++++|.++..++.+++..   +..  .+.....+  .+.    ..     
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~--vi~~~~~~--~~~----~~-----  245 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAE--TINFEEVD--DVV----EA-----  245 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcE--EEcCCcch--HHH----HH-----
Confidence            56788999999887 7777777765 4446999999999888887642   110  11111100  010    00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccc------------------cHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLN------------------PLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             +..+.....+|+++....-+                  .....+..+.+.++++|.++..+.
T Consensus       246 -------l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         246 -------LRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             -------HHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence                   00111334689888743211                  023467888999999999988543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.65  E-value=0.15  Score=46.47  Aligned_cols=114  Identities=17%  Similarity=0.249  Sum_probs=76.5

Q ss_pred             hhHHHHHHHHhhhcCC-----CcEEEEccCCCHHHHHHH---Hh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE
Q 047371           44 TTKLCLLLLQSLIKGG-----ELFLDYGTGSGILGIAAI---KF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL  113 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~-----~~vLD~G~G~G~~~~~la---~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~  113 (222)
                      +.+++...|...++.+     ..|+-+|+|-|-+.....   +.  ..-+++++|-+|.++-..+. ....... .++++
T Consensus       348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~-~~Vti  425 (649)
T KOG0822|consen  348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD-NRVTI  425 (649)
T ss_pred             HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc-CeeEE
Confidence            5677777777664433     257888999996655433   22  23579999999998877765 2233333 57888


Q ss_pred             EecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc-----cHHHHHHHHHHcccCCeEEEE
Q 047371          114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-----PLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~  181 (222)
                      +..|...+..                      +..+.|++++-..-.     .-.+-+.-+-+.|||+|+.+=
T Consensus       426 i~~DMR~w~a----------------------p~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  426 ISSDMRKWNA----------------------PREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             EeccccccCC----------------------chhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            8887655531                      347899999754321     135678999999999977653

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.53  E-value=0.38  Score=40.93  Aligned_cols=89  Identities=19%  Similarity=0.164  Sum_probs=56.6

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++++|-+|||. |.++..+++. +...++++|.++..++.|...    ..      +   +....             
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~------i---~~~~~-------------  196 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV------L---DPEKD-------------  196 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc------c---Chhhc-------------
Confidence            3577899888765 5666666654 655688889888776655431    10      0   10000             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                 ....+|+++-...-   ...++.+.+.++++|.+++.+..
T Consensus       197 -----------~~~g~Dvvid~~G~---~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       197 -----------PRRDYRAIYDASGD---PSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             -----------cCCCCCEEEECCCC---HHHHHHHHHhhhcCcEEEEEeec
Confidence                       12358998864432   34677888899999999986543

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=94.43  E-value=0.11  Score=48.25  Aligned_cols=122  Identities=17%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++..|||+||.+|.+...+.+. | .+-|+|+|+-|-.           .+.  ++.....+++.-.++         
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~--~c~t~v~dIttd~cr---------   99 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIP--NCDTLVEDITTDECR---------   99 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCC--ccchhhhhhhHHHHH---------
Confidence            778999999999999999988875 3 4679999997621           111  221222222111110         


Q ss_pred             hccccccccCCCCCCCeeEEEeccccc----cH----------HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLN----PL----------PQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~----~~----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                           ..++.+...-+.|+|+.+..-+    +.          ...+.-+...|..||.++...+.+..-.-+...+.+.
T Consensus       100 -----~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qL  174 (780)
T KOG1098|consen  100 -----SKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQL  174 (780)
T ss_pred             -----HHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHH
Confidence                 0011112344568888754321    11          1246777888999999777666666655555555555


Q ss_pred             hhcce
Q 047371          200 LEDIL  204 (222)
Q Consensus       200 ~~~~~  204 (222)
                      |.-++
T Consensus       175 f~kv~  179 (780)
T KOG1098|consen  175 FKKVE  179 (780)
T ss_pred             HHHHH
Confidence            44333

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.39  E-value=0.41  Score=40.41  Aligned_cols=101  Identities=20%  Similarity=0.198  Sum_probs=70.2

Q ss_pred             CCCcEEEEccCCCHHHHHHH--HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAI--KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la--~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .|+.|+-+| ..-..++.++  .. +.++..+|+++..++-..+.+...+++  ++....-|..+.-.      +.    
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g~~--~ie~~~~Dlr~plp------e~----  217 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELGYN--NIEAFVFDLRNPLP------ED----  217 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhCcc--chhheeehhcccCh------HH----
Confidence            478899998 4444444433  34 478999999999999999998888876  56555555433210      00    


Q ss_pred             cccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCC---eEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPG---AVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lkpg---G~l~~~  182 (222)
                                -.++||+.+.+||...  +..++..-...||-.   |++.++
T Consensus       218 ----------~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT  259 (354)
T COG1568         218 ----------LKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT  259 (354)
T ss_pred             ----------HHhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence                      2568999999998653  556676667777777   777775

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.33  E-value=0.43  Score=41.05  Aligned_cols=92  Identities=16%  Similarity=0.075  Sum_probs=58.8

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++||-.|+|. |..+..+++....++++++.++..++.+++    .|..  .+ +   +....             
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~--~v-i---~~~~~-------------  219 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA--SA-G---GAYDT-------------  219 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc--ee-c---ccccc-------------
Confidence            56789999999754 445555666534579999999988777765    3332  11 1   10000             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 ..+.+|+++.....   ...+....+.|+++|.+++.+.
T Consensus       220 -----------~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       220 -----------PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             -----------CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence                       12347876643222   3568888899999999988665

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.31  E-value=0.2  Score=43.30  Aligned_cols=114  Identities=17%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      ..+++|+.||.|.+..-+...+..-+.++|+++.+++..+.|...       -.+...|...+..               
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-------~~~~~~di~~~~~---------------   60 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-------GDIILGDIKELDG---------------   60 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-------CceeechHhhcCh---------------
Confidence            357999999999999877777888899999999998888877542       1133333322211               


Q ss_pred             ccccCCCCCCCeeEEEeccccccHH----------------HHHHHHHHcccCCeEEEEe---cCCCC---cHHHHHHHH
Q 047371          139 HEIRGISETEEYDVVIANILLNPLP----------------QLADHIVSYAKPGAVVGIS---GILSE---QLPRIINRY  196 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~~~----------------~~l~~~~~~LkpgG~l~~~---~~~~~---~~~~~~~~~  196 (222)
                         ..+ ....+|+++..+|+....                --+..+...++| -++++.   ++...   ....+.+.+
T Consensus        61 ---~~~-~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L  135 (328)
T COG0270          61 ---EAL-RKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKEL  135 (328)
T ss_pred             ---hhc-cccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHH
Confidence               000 111789999999986521                124567777888 455552   22232   555566665


Q ss_pred             Hhh
Q 047371          197 SEF  199 (222)
Q Consensus       197 ~~~  199 (222)
                      ++.
T Consensus       136 ~~~  138 (328)
T COG0270         136 EEL  138 (328)
T ss_pred             HHc
Confidence            553

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.28  E-value=0.24  Score=43.12  Aligned_cols=119  Identities=18%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             CCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ..+|||+|.|.|.-...+-.. + ...++.++.|+..-+.... +..+-.. ........++.              +.+
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t-~~td~r~s~vt--------------~dR  177 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVST-EKTDWRASDVT--------------EDR  177 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhccc-ccCCCCCCccc--------------hhc
Confidence            467999999999766555442 2 2456777887754443332 2221111 11111111110              000


Q ss_pred             ccccccCCCCCCCeeEEEe-cccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          137 SSHEIRGISETEEYDVVIA-NILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~-~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                      .     .+.....|++++. +..++.     +-..++.+..++.|||.+++.+-...-.-++......
T Consensus       178 l-----~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~  240 (484)
T COG5459         178 L-----SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQ  240 (484)
T ss_pred             c-----CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHH
Confidence            0     1113445676665 222221     3347899999999999999987666555555544443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.25  E-value=0.042  Score=40.25  Aligned_cols=92  Identities=20%  Similarity=0.320  Sum_probs=59.5

Q ss_pred             CCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCC
Q 047371           68 GSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISET  147 (222)
Q Consensus        68 G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (222)
                      |.|..+..+++....+++++|.++..++.+++.    +..   ..+. .....+.    +.+            ..+.+.
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~---~~~~-~~~~~~~----~~i------------~~~~~~   56 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GAD---HVID-YSDDDFV----EQI------------RELTGG   56 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TES---EEEE-TTTSSHH----HHH------------HHHTTT
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----ccc---cccc-ccccccc----ccc------------cccccc
Confidence            347777777776338999999999998888763    321   1121 1111110    111            111234


Q ss_pred             CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371          148 EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       148 ~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                      ..+|+++-...   ....++...++++++|.+++.+...
T Consensus        57 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   57 RGVDVVIDCVG---SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             SSEEEEEESSS---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             ccceEEEEecC---cHHHHHHHHHHhccCCEEEEEEccC
Confidence            57999997543   2578889999999999999987664

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=94.06  E-value=0.15  Score=43.81  Aligned_cols=98  Identities=20%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             hhHHHHHHHHhhhcCCC-c---EEEEccCCCHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           44 TTKLCLLLLQSLIKGGE-L---FLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~-~---vLD~G~G~G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      +-+++.++|..- +.++ +   -+|+|+|...+--.+. +......+++|++...+..|+.+...++++ +.+..+....
T Consensus        85 YihwI~DLLss~-q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~  162 (419)
T KOG2912|consen   85 YIHWIEDLLSSQ-QSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEP  162 (419)
T ss_pred             hHHHHHHHhhcc-cCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-cceeeEEecc
Confidence            445555555433 2232 2   3688777654332222 222356899999999999999999999987 4666665533


Q ss_pred             cccccccccccccchhccccccccCCC--CCCCeeEEEeccccc
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGIS--ETEEYDVVIANILLN  160 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v~~~~~~~  160 (222)
                      ...                 ..++.+.  ++..||.+.||||+.
T Consensus       163 ~kt-----------------ll~d~~~~~~e~~ydFcMcNPPFf  189 (419)
T KOG2912|consen  163 QKT-----------------LLMDALKEESEIIYDFCMCNPPFF  189 (419)
T ss_pred             hhh-----------------cchhhhccCccceeeEEecCCchh
Confidence            211                 0111111  344699999999974

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=93.91  E-value=0.14  Score=44.13  Aligned_cols=40  Identities=23%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             EEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371           62 FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        62 vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      |+|+.||.|.++.-+.+.+..-+.++|+++.+.+..+.|.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~   40 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF   40 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence            5899999999998887778777889999999988887765

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.77  E-value=0.21  Score=43.42  Aligned_cols=103  Identities=22%  Similarity=0.275  Sum_probs=61.0

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||-.|+|. |..+..+++. +..+++++|.++...+.+++    .+..  . .+...+ ....    ...    
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~--~-~i~~~~-~~~~----~~i----  237 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT--H-TVNSSG-TDPV----EAI----  237 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc--e-EEcCCC-cCHH----HHH----
Confidence            56789999998754 4555666665 54469999999988888754    2321  1 111111 0100    000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              ........+|+++-...-   ...+..+.+.++++|.+++.+..
T Consensus       238 --------~~~~~~~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       238 --------RALTGGFGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             --------HHHhCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECCC
Confidence                    001123458998853321   34567778899999999986554

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.75  E-value=0.057  Score=38.88  Aligned_cols=32  Identities=28%  Similarity=0.277  Sum_probs=25.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCC
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDID   90 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s   90 (222)
                      +...++|+|||+|.+.-.|.+.|. .=.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence            355799999999999988888764 34788863

; GO: 0008168 methyltransferase activity

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=93.51  E-value=0.33  Score=40.92  Aligned_cols=57  Identities=32%  Similarity=0.498  Sum_probs=46.6

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      .++...+.....+++.|||..+|+|..+......+ .+++|+|+++..++.+.+++..
T Consensus       210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHHHHHHHHHHh
Confidence            33444444456689999999999999999887776 6899999999999999988864

>PRK11524 putative methyltransferase; Provisional

Probab=93.48  E-value=0.1  Score=44.26  Aligned_cols=37  Identities=22%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CCCCeeEEEecccccc-------------------HHHHHHHHHHcccCCeEEEEe
Q 047371          146 ETEEYDVVIANILLNP-------------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ++++||+|+++||+..                   +.+.+.++.++|||||.+++.
T Consensus        24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524         24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            5778999999999742                   235789999999999999985

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.45  E-value=0.49  Score=42.35  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      -+|++|+-+|+|. |......++.-..+|+++|.++..+..|+.    .|..     ..  +...               
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~~-----~~--~~~e---------------  253 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGYE-----VM--TMEE---------------  253 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCCE-----Ec--cHHH---------------
Confidence            4699999999998 555544444323589999999988777754    2321     11  1000               


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHH-HHHcccCCeEEEEecCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADH-IVSYAKPGAVVGISGIL  185 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~  185 (222)
                                ....+|+++....   ....+.. ..+.+|+||.++..+..
T Consensus       254 ----------~v~~aDVVI~atG---~~~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         254 ----------AVKEGDIFVTTTG---NKDIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             ----------HHcCCCEEEECCC---CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence                      1134799986432   2345544 48899999999887644

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.35  E-value=0.59  Score=42.52  Aligned_cols=42  Identities=14%  Similarity=0.159  Sum_probs=35.9

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      .+++|+.||.|.+..-+...|...+.++|+++.+.+..+.|.
T Consensus        89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            489999999999988887778778899999998887777664

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.30  E-value=0.72  Score=39.90  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=58.3

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDI---DPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +++.+|+-.|+|. |.++..+++....++++++.   ++..++.+++    .+..     ......+...       . .
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-----~v~~~~~~~~-------~-~  233 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-----YVNSSKTPVA-------E-V  233 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-----EecCCccchh-------h-h
Confidence            5788999998865 55666666653358999987   5666666653    2321     1111100000       0 0


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                  ...+.+|+++....-   ...+..+.+.++++|.+++.+..
T Consensus       234 ------------~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         234 ------------KLVGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             ------------hhcCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEecC
Confidence                        012468998864432   24677888999999999886543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK13699 putative methylase; Provisional

Probab=93.27  E-value=0.18  Score=41.35  Aligned_cols=52  Identities=10%  Similarity=0.080  Sum_probs=37.0

Q ss_pred             CCCCeeEEEecccccc------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          146 ETEEYDVVIANILLNP------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                      +++++|+|+.+||+..                  +...+.++.|+|||||.+++.+. ......+...++.
T Consensus        17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~-~~~~~~~~~al~~   86 (227)
T PRK13699         17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG-WNRVDRFMAAWKN   86 (227)
T ss_pred             CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec-cccHHHHHHHHHH
Confidence            7889999999999841                  34578999999999999887422 2223445555544

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.05  E-value=0.29  Score=42.78  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||-.|+|. |..+..+++. +..+|+++|.++..++.+++.    +..   ..+.. ....+.    ...    
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~-~~~~~~----~~i----  252 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNA-GDPNAV----EQV----  252 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCC-CchhHH----HHH----
Confidence            56788998888764 4555556654 544799999999988887642    321   11111 111110    000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              ... ..+.+|+++....   -...++.+.+.++++|.+++.+..
T Consensus       253 --------~~~-~~~g~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         253 --------REL-TGGGVDYAFEMAG---SVPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             --------HHH-hCCCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEccC
Confidence                    001 1226899986432   135677788899999999886543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=92.91  E-value=0.32  Score=42.13  Aligned_cols=103  Identities=18%  Similarity=0.275  Sum_probs=62.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|+++.-+|||. |.-++.-+. .+...++++|++++.++.|++.=....++       ..+....    -+....+ 
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn-------~~~~~~v----v~~i~~~-  250 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVN-------PKEVDDV----VEAIVEL-  250 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeec-------chhhhhH----HHHHHHh-
Confidence            67899999999997 655555444 47889999999999999998742222211       1101000    0011111 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                  -.+..|.++---   ...+.+++....+.++|..++.++.
T Consensus       251 ------------T~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv~  287 (366)
T COG1062         251 ------------TDGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGVA  287 (366)
T ss_pred             ------------cCCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEecC
Confidence                        233567776421   1234677777778889988885443

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.89  E-value=0.38  Score=42.28  Aligned_cols=53  Identities=17%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             HHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHH
Q 047371           47 LCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQ   99 (222)
Q Consensus        47 ~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~   99 (222)
                      .+.+++.+.  ..+-+.++|+|+|.|.++.++.-...-.|.|+|-|....+.|++
T Consensus       140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            344444443  23457899999999999998875444689999999877666643

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.83  E-value=0.47  Score=38.59  Aligned_cols=100  Identities=20%  Similarity=0.321  Sum_probs=60.0

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+||..|+|+ |..+..+++....++++++.++...+.++..    +..  .+ +...+. ...       ..+   
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~--~~-~~~~~~-~~~-------~~~---  194 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD--HV-IDYKEE-DLE-------EEL---  194 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc--ee-ccCCcC-CHH-------HHH---
Confidence            6788999999886 5555556655447899999998777666432    211  10 111100 000       000   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                            . ....+.+|+++.+..-   ...+..+.+.++++|.++..+.
T Consensus       195 ------~-~~~~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         195 ------R-LTGGGGADVVIDAVGG---PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             ------H-HhcCCCCCEEEECCCC---HHHHHHHHHhcccCCEEEEEcc
Confidence                  0 1134579999975432   1456777888999999887543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=92.81  E-value=0.41  Score=40.65  Aligned_cols=101  Identities=20%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.+||..|+|. |..+..+++....++++++.++...+.+++    .+..  .+  .........    ...     
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~--~~--~~~~~~~~~----~~~-----  225 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD--EV--LNSLDDSPK----DKK-----  225 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC--EE--EcCCCcCHH----HHH-----
Confidence            56788888887663 566666776544679999999988777754    2322  11  111100100    000     


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              .....+.+|+++....   ....++.+.+.|+++|.++..+.
T Consensus       226 --------~~~~~~~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         226 --------AAGLGGGFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             --------HHhcCCCceEEEECCC---CHHHHHHHHHHhhcCCEEEEECC
Confidence                    0113457999886432   24577888999999999987543

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.77  E-value=0.45  Score=40.75  Aligned_cols=101  Identities=19%  Similarity=0.261  Sum_probs=58.3

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||-.|+|. |..+..+++. +..++++++.++...+.+++.    +..  .+ +...+. ..     ...    
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~--~~-i~~~~~-~~-----~~~----  223 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD--FV-INSGQD-DV-----QEI----  223 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC--EE-EcCCcc-hH-----HHH----
Confidence            46788999987753 3445555554 544499999999887777542    321  10 111100 00     000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              ........+|+++....-   ...+..+.+.|+++|.+++.+.
T Consensus       224 --------~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         224 --------RELTSGAGADVAIECSGN---TAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             --------HHHhCCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcC
Confidence                    001133469999864322   3455677788999999987554

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.77  E-value=0.1  Score=37.75  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=26.6

Q ss_pred             CeeEEEecccccc---------HHHHHHHHHHcccCCeEEEEe
Q 047371          149 EYDVVIANILLNP---------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       149 ~~D~v~~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +||+|+|-...-+         +..++..+++.|+|||++++.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            4899999665432         556899999999999999993

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.68  E-value=1.8  Score=30.90  Aligned_cols=89  Identities=15%  Similarity=0.134  Sum_probs=54.7

Q ss_pred             cCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccC
Q 047371           67 TGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRG  143 (222)
Q Consensus        67 ~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (222)
                      ||.|.++..+++.   ....++.+|.++..++.++..         .+.+..+|.....     .....           
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~-----~l~~a-----------   58 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPE-----VLERA-----------   58 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHH-----HHHHT-----------
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------ccccccccchhhh-----HHhhc-----------
Confidence            6777777776642   435899999999998887653         2347777775542     11111           


Q ss_pred             CCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          144 ISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       144 ~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                        ....+|.+++...-+...-.+....+.+-|...++..
T Consensus        59 --~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   59 --GIEKADAVVILTDDDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             --TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             --CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence              4456888887554443333455566667777777764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.62  E-value=0.43  Score=39.92  Aligned_cols=99  Identities=21%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++||-.|+|. |..+..+++. +..+++++|.++..++.+++.    +..  . .+...+..       ...     
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~-~i~~~~~~-------~~~-----  179 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT--A-LAEPEVLA-------ERQ-----  179 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc--E-ecCchhhH-------HHH-----
Confidence            4788999998764 4455555554 555699999999888777652    321  1 01100000       000     


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             ........+|+++-...   -...++.+.+.++++|.+++.+.
T Consensus       180 -------~~~~~~~g~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       180 -------GGLQNGRGVDVALEFSG---ATAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             -------HHHhCCCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEecc
Confidence                   00112345899885332   23567778889999999998664

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.53  E-value=1.6  Score=37.25  Aligned_cols=85  Identities=22%  Similarity=0.233  Sum_probs=57.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .|..||--|+|+|   .++..+++.+. .++..|+++...+...+.++..|    ++..+.+|..+.. ++...+..+.+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~~e-ei~~~a~~Vk~  110 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISDRE-EIYRLAKKVKK  110 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC----ceeEEEecCCCHH-HHHHHHHHHHH
Confidence            4778999999998   46777888874 88999999988888777776554    4556666664432 11111122211


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 +-+.+|+++.|..+
T Consensus       111 -----------e~G~V~ILVNNAGI  124 (300)
T KOG1201|consen  111 -----------EVGDVDILVNNAGI  124 (300)
T ss_pred             -----------hcCCceEEEecccc
Confidence                       45689999988754

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=92.39  E-value=0.56  Score=40.40  Aligned_cols=102  Identities=20%  Similarity=0.297  Sum_probs=58.1

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+||-.|+|. |..+..+++. +...+++++.++...+.+++    .+..  .  +...+....     .   .  
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~--~--~i~~~~~~~-----~---~--  219 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM--Q--TFNSREMSA-----P---Q--  219 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc--e--EecCcccCH-----H---H--
Confidence            45788999998755 4455555654 54458999999988777643    2321  1  111110000     0   0  


Q ss_pred             hccccccccCCCCCCCee-EEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYD-VVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D-~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                             +........+| +++-...   -...+....++++++|.+++.+..
T Consensus       220 -------~~~~~~~~~~d~~v~d~~G---~~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        220 -------IQSVLRELRFDQLILETAG---VPQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             -------HHHHhcCCCCCeEEEECCC---CHHHHHHHHHHhhcCCEEEEEccC
Confidence                   00011234577 5553221   135678888999999999987654

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=91.85  E-value=0.92  Score=39.67  Aligned_cols=57  Identities=18%  Similarity=0.276  Sum_probs=39.8

Q ss_pred             HHHHHHhhhcC-CCcEEEEccCCCHHHHHHHH----h-----CCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           48 CLLLLQSLIKG-GELFLDYGTGSGILGIAAIK----F-----GAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        48 ~~~~l~~~~~~-~~~vLD~G~G~G~~~~~la~----~-----~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      +.+.++++-.| .-.++|+|+|.|.++..+.+    .     ...++.-+|.|++....=+++++..
T Consensus        66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            34444444333 45799999999988776553    1     2578999999998887777766543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=91.85  E-value=1.1  Score=37.09  Aligned_cols=56  Identities=14%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             HHHHHHhhhcC--CCcEEEEccCCCHHHHHHHHh---------CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           48 CLLLLQSLIKG--GELFLDYGTGSGILGIAAIKF---------GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        48 ~~~~l~~~~~~--~~~vLD~G~G~G~~~~~la~~---------~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      +...++..-.|  .-+|+|+|+|+|.++.-+++.         ...+++-+|.|+.+.+.-++++..
T Consensus         6 ~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    6 IAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            34444444233  358999999999988876642         235899999999988877777654

; PDB: 4F3N_A 1ZKD_B.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.60  E-value=0.85  Score=41.91  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             CCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHH
Q 047371           58 GGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQ   99 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~   99 (222)
                      ++.+++-+|+|. |..+..+++.-...++++|.++..++.++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            467999999997 566665555433579999999998877765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.44  E-value=0.61  Score=42.18  Aligned_cols=126  Identities=17%  Similarity=0.171  Sum_probs=78.7

Q ss_pred             CCCcEEEEccCCCHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .+..+|-+|-|.|.+...+- ..+..++++++++|.+++.|.++.....-  .+......|+..+..       ..    
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~--~r~~V~i~dGl~~~~-------~~----  361 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS--DRNKVHIADGLDFLQ-------RT----  361 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh--hhhhhhHhhchHHHH-------HH----
Confidence            34578889999998877654 45778999999999999999987743221  123333344333211       00    


Q ss_pred             ccccccCCCCCCCeeEEEecc---cccc---------HHHHHHHHHHcccCCeEEEEecCC--CCcHHHHHHHHHhhh
Q 047371          137 SSHEIRGISETEEYDVVIANI---LLNP---------LPQLADHIVSYAKPGAVVGISGIL--SEQLPRIINRYSEFL  200 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~---~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~~  200 (222)
                          +........||+++.+.   ..+.         -..++..+...|.|.|.+++....  .....++...+...|
T Consensus       362 ----~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf  435 (482)
T KOG2352|consen  362 ----AKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVF  435 (482)
T ss_pred             ----hhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhh
Confidence                11112456799998631   1111         234789999999999999986443  333455555555543

>PLN02740 Alcohol dehydrogenase-like

Probab=91.41  E-value=1.9  Score=37.86  Aligned_cols=103  Identities=17%  Similarity=0.274  Sum_probs=60.1

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc-ccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR-TFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++    .+..  . .+...+.. .+.    .....+
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~--~-~i~~~~~~~~~~----~~v~~~  264 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT--D-FINPKDSDKPVH----ERIREM  264 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc--E-EEecccccchHH----HHHHHH
Confidence            56789999998764 4555556654 54479999999988888865    2322  1 11111100 000    000011


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL  185 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  185 (222)
                                   ..+.+|+++-...-   ...+....+.++++ |.+++.+..
T Consensus       265 -------------~~~g~dvvid~~G~---~~~~~~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        265 -------------TGGGVDYSFECAGN---VEVLREAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             -------------hCCCCCEEEECCCC---hHHHHHHHHhhhcCCCEEEEEccC
Confidence                         12268999864432   35667777888886 888876543

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=91.32  E-value=3.9  Score=31.78  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             CCCCeeEEEecccccc----------------HHHHHHHHHHcccCCeEEEEe
Q 047371          146 ETEEYDVVIANILLNP----------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ..++||.|+.|.|-..                +..+++.+..+|+++|.+.++
T Consensus        72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            4678999999987533                345789999999999999986

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=91.28  E-value=7.9  Score=32.42  Aligned_cols=116  Identities=10%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh----C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF----G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+.+++|+|.|+..-+..+...    + ...++.+|++...+......+...-.. -.+.-..++.+..-       ..+
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~~L-------a~~  149 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYELAL-------AEL  149 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHHHH-------hcc
Confidence            5789999999999877766542    2 367999999999887655544332211 12333333332211       111


Q ss_pred             hhccccccccCCCCCCCeeEEE-ecccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371          133 VEYLSSHEIRGISETEEYDVVI-ANILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN  194 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~-~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (222)
                                   +..+--+++ ....+..     -..++.++...+.||-++.+-.-..+..+.++.
T Consensus       150 -------------~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~  204 (321)
T COG4301         150 -------------PRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEA  204 (321)
T ss_pred             -------------cCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHH
Confidence                         222222222 2222222     335899999999999999984333333333333

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=91.18  E-value=0.9  Score=39.38  Aligned_cols=102  Identities=15%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ | .|..+..+++....++++++.++...+.+++.   .+..  . .+...+...+.    ..     
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~--~-vi~~~~~~~~~----~~-----  220 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD--E-AFNYKEEPDLD----AA-----  220 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC--E-EEECCCcccHH----HH-----
Confidence            567899999987 3 36677777776446799999988877766532   2322  1 11111000110    00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             +... ..+.+|+++....    ...+..+.+.++++|.+++.+.
T Consensus       221 -------i~~~-~~~gvD~v~d~vG----~~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        221 -------LKRY-FPEGIDIYFDNVG----GDMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             -------HHHH-CCCCcEEEEECCC----HHHHHHHHHHhccCCEEEEECc
Confidence                   0001 1246899986432    2467788899999999988654

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.99  E-value=0.51  Score=40.55  Aligned_cols=46  Identities=28%  Similarity=0.432  Sum_probs=36.4

Q ss_pred             hhcCCCcEEEEccCCCHHH-HHHHH-hCCCEEEEEeCChHHHHHHHHH
Q 047371           55 LIKGGELFLDYGTGSGILG-IAAIK-FGAAMFVGVDIDPQVIKSAHQN  100 (222)
Q Consensus        55 ~~~~~~~vLD~G~G~G~~~-~~la~-~~~~~v~gvD~s~~~l~~a~~~  100 (222)
                      .+++|+++.-+|+|.=.++ .+-++ .++++++|+|+++...+.|++.
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f  236 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF  236 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence            3678999999999974433 34444 4789999999999999999874

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=90.71  E-value=5.6  Score=30.89  Aligned_cols=109  Identities=13%  Similarity=0.031  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      +...+...+.+...++.+|+=+||=+-...+.-...+..+++..|++...        ...+   .+ .|..-|......
T Consensus        11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~---~~-~F~fyD~~~p~~   78 (162)
T PF10237_consen   11 TAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFG---GD-EFVFYDYNEPEE   78 (162)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcC---Cc-ceEECCCCChhh
Confidence            34444444544444677899998877555543322345688999998733        2211   12 344444433210


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (222)
                       ++               ..  -.++||+|+++||+-.   ..+....+..++|+++.+++.
T Consensus        79 -~~---------------~~--l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~  122 (162)
T PF10237_consen   79 -LP---------------EE--LKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC  122 (162)
T ss_pred             -hh---------------hh--cCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence             00               00  2468999999999843   334567777777888888875

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=90.70  E-value=0.96  Score=42.92  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=27.6

Q ss_pred             CCeeEEEecccc------ccHHHHHHHHHHcccCCeEEEEe
Q 047371          148 EEYDVVIANILL------NPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       148 ~~~D~v~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ..+|+++.++.-      -+..+++..+.++++|||.+...
T Consensus       165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence            469999987421      13567999999999999999874

>PLN02827 Alcohol dehydrogenase-like

Probab=90.54  E-value=2.3  Score=37.34  Aligned_cols=103  Identities=17%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|+|. |..+..+++. +...++++|.++...+.|++    .+..  .+ +...+. ..+.    .....+
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~--~~-i~~~~~~~~~~----~~v~~~  259 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT--DF-INPNDLSEPIQ----QVIKRM  259 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc--EE-EcccccchHHH----HHHHHH
Confidence            56789999998754 4555555654 55569999999988777754    2332  11 111100 0000    000011


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL  185 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  185 (222)
                                   ..+.+|+++-...   ....+....+.+++| |.+++.+..
T Consensus       260 -------------~~~g~d~vid~~G---~~~~~~~~l~~l~~g~G~iv~~G~~  297 (378)
T PLN02827        260 -------------TGGGADYSFECVG---DTGIATTALQSCSDGWGLTVTLGVP  297 (378)
T ss_pred             -------------hCCCCCEEEECCC---ChHHHHHHHHhhccCCCEEEEECCc
Confidence                         1226899886432   224567778889998 999876543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=90.51  E-value=1.4  Score=39.03  Aligned_cols=56  Identities=14%  Similarity=0.051  Sum_probs=38.3

Q ss_pred             CcEEEEccCC-CHHHH-HHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           60 ELFLDYGTGS-GILGI-AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        60 ~~vLD~G~G~-G~~~~-~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      ++||-+|||. |+... .+++.+..+|+..|-+.+..+.+......      +++....|+...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~------~v~~~~vD~~d~   59 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG------KVEALQVDAADV   59 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc------cceeEEecccCh
Confidence            4689999975 54333 45666657999999999888888665421      455666666443

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=90.46  E-value=0.49  Score=39.02  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=33.2

Q ss_pred             HHHhhhc--CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371           51 LLQSLIK--GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        51 ~l~~~~~--~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      .+...++  +..+++|+.||+|.++..+... ...++..|+++..+...+..+
T Consensus        11 ~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l   62 (260)
T PF02086_consen   11 WIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVL   62 (260)
T ss_dssp             HHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHH
Confidence            3444444  6889999999999999987664 478999999998776665333

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=90.44  E-value=12  Score=33.14  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH-HHHHHHhcCCCCCceeEEecCCcccc
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS-AHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      ....+++.+......+ .|+-++=.-|.++..++..+..   .+ .+....+. .+.|+..+++..+.++.......   
T Consensus        31 ade~ll~~~~~~~~~~-~~~i~nd~fGal~~~l~~~~~~---~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~---  102 (378)
T PRK15001         31 ADEYLLQQLDDTEIRG-PVLILNDAFGALSCALAEHKPY---SI-GDSYISELATRENLRLNGIDESSVKFLDSTAD---  102 (378)
T ss_pred             HHHHHHHHHhhcccCC-CEEEEcCchhHHHHHHHhCCCC---ee-ehHHHHHHHHHHHHHHcCCCcccceeeccccc---
Confidence            4444444444332222 7999999999999998865432   22 22333333 36677888876444444432211   


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecC
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                             ..+.+|+|++-.|-..  +...+..+.+.|.||+.++..+-
T Consensus       103 -----------------------~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~  143 (378)
T PRK15001        103 -----------------------YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAK  143 (378)
T ss_pred             -----------------------ccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence                                   2445899998766542  45578899999999999876433

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=90.37  E-value=1.1  Score=38.61  Aligned_cols=44  Identities=30%  Similarity=0.472  Sum_probs=33.3

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHH
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQ   99 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~   99 (222)
                      ++++.+|+-.|+|. |..+..+++....+++++|.++..++.+++
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence            56789999999855 556666666533579999999988887754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=90.36  E-value=0.23  Score=41.88  Aligned_cols=40  Identities=28%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHH
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIK   95 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~   95 (222)
                      .-.+++|||+|||.|.-.+.+...+...+...|+|...++
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            3468999999999999888877777678999999987774

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=90.29  E-value=0.73  Score=35.69  Aligned_cols=111  Identities=17%  Similarity=0.205  Sum_probs=54.4

Q ss_pred             ccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHH-HHHHhCCC-EEEEEeCChHHHHHHHHHHHhcCCCCCceeE
Q 047371           36 AFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGI-AAIKFGAA-MFVGVDIDPQVIKSAHQNAALNNIGPKKIKL  113 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~-~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~  113 (222)
                      .|..........+.++|......|++|.=.|+|....++ ........ -...+|.++.     +......|   ..+.+
T Consensus        45 ~f~~~~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-----K~G~~~PG---t~ipI  116 (160)
T PF08484_consen   45 NFAKRVEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-----KQGKYLPG---THIPI  116 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG-----GTTEE-TT---T--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-----hcCcccCC---CCCeE
Confidence            343333334445556665566689999999999976654 34333222 3467798772     22211122   12333


Q ss_pred             EecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                      ...  +.+                        .....|+++. .+.++..++++.+...++.||.+++
T Consensus       117 ~~p--~~l------------------------~~~~pd~viv-law~y~~EI~~~~~~~~~~gg~fi~  157 (160)
T PF08484_consen  117 VSP--EEL------------------------KERKPDYVIV-LAWNYKDEIIEKLREYLERGGKFIV  157 (160)
T ss_dssp             EEG--GG--------------------------SS--SEEEE-S-GGGHHHHHHHTHHHHHTT-EEEE
T ss_pred             CCH--HHH------------------------hhCCCCEEEE-cChhhHHHHHHHHHHHHhcCCEEEE
Confidence            322  111                        3445688776 3355578899999999999999987

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=90.27  E-value=4.3  Score=35.26  Aligned_cols=20  Identities=25%  Similarity=0.217  Sum_probs=14.0

Q ss_pred             CCCcEEEEccCCCHHHHHHH
Q 047371           58 GGELFLDYGTGSGILGIAAI   77 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la   77 (222)
                      ..-+|+|+||.+|..++.+.
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~   35 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAV   35 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHH
T ss_pred             CceEEEecCCCCCccHHHHH
Confidence            34589999999998877654

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=90.14  E-value=1.2  Score=38.43  Aligned_cols=103  Identities=19%  Similarity=0.296  Sum_probs=59.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+||-.|+|. |..+..+++. +...++++|.++...+.+++    .+..  .  +.......+.    ..     
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~--~--~v~~~~~~~~----~~-----  226 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT--D--IVDYKNGDVV----EQ-----  226 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--e--EecCCCCCHH----HH-----
Confidence            56788898887653 4455555554 55579999999887777764    2321  1  1111111110    00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                             +........+|+++....-   ...+..+.+.|+++|.++..+..
T Consensus       227 -------i~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~~  268 (351)
T cd08285         227 -------ILKLTGGKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNYY  268 (351)
T ss_pred             -------HHHHhCCCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEeccc
Confidence                   0011133468999863321   35677888899999998875443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=90.13  E-value=1.2  Score=33.38  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=39.7

Q ss_pred             CCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          146 ETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                      ...++|+|+...-.....+.++.+...+.++..+++....-...+.+.+.+
T Consensus        64 ~~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~  114 (151)
T PF02558_consen   64 DAGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF  114 (151)
T ss_dssp             HHSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred             ccCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence            356799999877666788899999999999998888766666666666555

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=89.91  E-value=1.4  Score=37.43  Aligned_cols=100  Identities=15%  Similarity=0.241  Sum_probs=59.7

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|++  .|..+..+++....++++++.++...+.+++    .+..  .+ +...+...+.    ...    
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~--~v-i~~~~~~~~~----~~~----  200 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD--VA-FNYKTVKSLE----ETL----  200 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--EE-EeccccccHH----HHH----
Confidence            5678999988853  3667777777644689999998887777753    2332  11 1111111110    000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              ... ..+.+|+++....    ...+..+.++|+++|.++..+
T Consensus       201 --------~~~-~~~gvdvv~d~~G----~~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       201 --------KKA-SPDGYDCYFDNVG----GEFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             --------HHh-CCCCeEEEEECCC----HHHHHHHHHHhCcCcEEEEec
Confidence                    000 2346999985432    234577889999999998754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.83  E-value=0.92  Score=40.16  Aligned_cols=55  Identities=15%  Similarity=0.169  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      .++.-.++|.  +.++++||-+. +.|..++.++..+.++|++||+||.++...+-..
T Consensus        23 Dp~vD~~aL~--i~~~d~vl~It-SaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   23 DPRVDMEALN--IGPDDRVLTIT-SAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             CcHHHHHHhC--CCCCCeEEEEc-cCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence            3333344442  56899999995 4455555444455589999999999887765544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.46  E-value=4  Score=34.85  Aligned_cols=114  Identities=12%  Similarity=0.049  Sum_probs=67.1

Q ss_pred             CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++|+-+|+|. | .++..|++.+ ..|+.++-+.+.++..++.   .|+.     ... +.......... ..       
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~~~~~~i~~~---~Gl~-----i~~-~g~~~~~~~~~-~~-------   64 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQA---GGLT-----LVE-QGQASLYAIPA-ET-------   64 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCC-CCeEEEEechHHHHHHhhc---CCeE-----Eee-CCcceeeccCC-CC-------
Confidence            4688999997 4 4666777765 5789999877666555432   1221     110 00000000000 00       


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS  197 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (222)
                            ....+.+|+|+..-=-++..+.++.+..++.++..++.....-...+.+.+.+.
T Consensus        65 ------~~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~  118 (305)
T PRK05708         65 ------ADAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP  118 (305)
T ss_pred             ------cccccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence                  002457999987544445778889999999999988776555556566655543

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=89.34  E-value=2.4  Score=33.01  Aligned_cols=93  Identities=16%  Similarity=0.227  Sum_probs=53.8

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHH-HHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSA-HQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +++.+-+|...=-+-..+..++++++..+|.++--+..- +.          ++.-.  ....+.               
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~d----------r~ssi--~p~df~---------------   54 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRD----------RLSSI--LPVDFA---------------   54 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccc----------ccccc--cHHHHH---------------
Confidence            566777776654455555567888999999876222111 11          11000  000000               


Q ss_pred             cccccCC-CCCCCeeEEEecccccc------------H--HHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGI-SETEEYDVVIANILLNP------------L--PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~-~~~~~~D~v~~~~~~~~------------~--~~~l~~~~~~LkpgG~l~~~  182 (222)
                          .+| ...++||.+.+...+++            .  ...+..+.+.|||||.+++.
T Consensus        55 ----~~~~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~  110 (177)
T PF03269_consen   55 ----KNWQKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG  110 (177)
T ss_pred             ----HHHHHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence                001 13567888887665544            1  23578899999999999995

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=88.98  E-value=1.5  Score=38.78  Aligned_cols=106  Identities=21%  Similarity=0.393  Sum_probs=60.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||-.|+|. |..+..+++. +...++++|.++..++.|++.    +..    .+.......+.    ....   
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~----~v~~~~~~~~~----~~v~---  247 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE----TVDLSKDATLP----EQIE---  247 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe----EEecCCcccHH----HHHH---
Confidence            56788888877754 4455555554 655677788888888877652    321    11111100110    0000   


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                               .......+|+++-......           ....++++.+++++||.+++.+..
T Consensus       248 ---------~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       248 ---------QILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             ---------HHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence                     0112345899986332210           124788889999999999986654

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=88.89  E-value=2.1  Score=37.23  Aligned_cols=98  Identities=11%  Similarity=0.062  Sum_probs=54.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++++||-.|+|. |..+..+++....++++++.++.....+.+   ..+..  .+ +...+...+             
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~---~~Ga~--~v-i~~~~~~~~-------------  241 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN---RLGAD--SF-LVSTDPEKM-------------  241 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH---hCCCc--EE-EcCCCHHHH-------------
Confidence            45788898888765 556666666534578888887654332221   22321  11 110000000             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             ..  ..+.+|+++-...   -...++.+.+.++++|.++..+.
T Consensus       242 -------~~--~~~~~D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        242 -------KA--AIGTMDYIIDTVS---AVHALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             -------Hh--hcCCCCEEEECCC---CHHHHHHHHHHhcCCcEEEEeCC
Confidence                   00  1124898885332   23457778889999999987544

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.62  E-value=8.7  Score=32.24  Aligned_cols=108  Identities=18%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             cEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC--CceeEEecCCcccccccccccccchhcc
Q 047371           61 LFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP--KKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        61 ~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +|.-+|+|. |. ++..+++.+ .+|+.++.++..++..++.    ++..  .....   .....               
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~---~~~~~---------------   58 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNEN----GLRLEDGEITV---PVLAA---------------   58 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHc----CCcccCCceee---cccCC---------------
Confidence            477788876 32 444455555 5799999877666554432    3210  00000   00000               


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                           .+......+|+|+..........+++.+...+.++..++.....-...+.+.+.+
T Consensus        59 -----~~~~~~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~  113 (304)
T PRK06522         59 -----DDPAELGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI  113 (304)
T ss_pred             -----CChhHcCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence                 0000225789999876666678889999998988877766444433344444433

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=88.41  E-value=3.3  Score=33.98  Aligned_cols=110  Identities=14%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      .+.|+++|.|.|.++..+...+.+++..+|.++..+.-.+.......   .++.+...|+..+..   +..      -+.
T Consensus        51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~---~~~~IHh~D~LR~~I---~~~------~~~  118 (326)
T KOG0821|consen   51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP---GKLRIHHGDVLRFKI---EKA------FSE  118 (326)
T ss_pred             cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC---cceEEeccccceehH---Hhh------cch
Confidence            56899999999999999998888899999999987776665444322   366677777654422   000      011


Q ss_pred             ccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEE
Q 047371          139 HEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVG  180 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~  180 (222)
                      ...++|..+-+.=-++-|.|+..... +++.+..+--..|.+.
T Consensus       119 ~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~  161 (326)
T KOG0821|consen  119 SLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFV  161 (326)
T ss_pred             hhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCee
Confidence            22345665555555666888754322 3344444333444433

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=87.84  E-value=2.8  Score=35.56  Aligned_cols=105  Identities=18%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             CcEEEEccCC--CHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           60 ELFLDYGTGS--GILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        60 ~~vLD~G~G~--G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .+|+-+|.|-  |.++..+.+.+ ...+++.|.+...++.+...    ++.     .........               
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~-----d~~~~~~~~---------------   59 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVI-----DELTVAGLA---------------   59 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Ccc-----cccccchhh---------------
Confidence            4677778774  34566666554 34589999988777776532    222     111100000               


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                              ......|+|+..-|......+++++...|++|..+.=   .......+.+.+++.
T Consensus        60 --------~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~D---v~S~K~~v~~a~~~~  111 (279)
T COG0287          60 --------EAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTD---VGSVKSSVVEAMEKY  111 (279)
T ss_pred             --------hhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEe---cccccHHHHHHHHHh
Confidence                    0345589999999998889999999999999854432   222333444444444

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=87.80  E-value=4.3  Score=35.98  Aligned_cols=45  Identities=24%  Similarity=0.392  Sum_probs=33.6

Q ss_pred             hcCCCcEEEEc-cCC-CHHHHHHHHh---CCCEEEEEeCChHHHHHHHHH
Q 047371           56 IKGGELFLDYG-TGS-GILGIAAIKF---GAAMFVGVDIDPQVIKSAHQN  100 (222)
Q Consensus        56 ~~~~~~vLD~G-~G~-G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~  100 (222)
                      ++++.+|+-+| +|. |..+..+++.   +..+++++|.++..++.+++.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~  222 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL  222 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence            46788898887 343 6666666664   335899999999999988774

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.56  E-value=1.9  Score=37.65  Aligned_cols=102  Identities=17%  Similarity=0.219  Sum_probs=59.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      ++++++||-.|+|. |..+..+++. +..+|+++|.++..++.+++.    +..   ..+...+. ..+.    ..... 
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~---~~i~~~~~~~~~~----~~v~~-  250 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GAT---DCVNPNDYDKPIQ----EVIVE-  250 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC---eEEcccccchhHH----HHHHH-
Confidence            56789999998764 4555666665 544899999999988888552    321   11111100 0000    00000 


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (222)
                                 + ..+.+|+++-...-   ...+....+.++++ |.+++.+.
T Consensus       251 -----------~-~~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       251 -----------I-TDGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             -----------H-hCCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEec
Confidence                       1 12358988854321   34567778888886 88887554

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=87.32  E-value=8.8  Score=28.51  Aligned_cols=93  Identities=16%  Similarity=0.137  Sum_probs=47.6

Q ss_pred             CCcEEEEccCCC-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           59 GELFLDYGTGSG-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ..+++|+|-|.= ..+..|.+.+ -.|+++|+++.       ++. .+     +.+...|......       .      
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~-------~a~-~g-----~~~v~DDif~P~l-------~------   66 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR-------KAP-EG-----VNFVVDDIFNPNL-------E------   66 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S------------S-----TTEE---SSS--H-------H------
T ss_pred             CCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc-------ccc-cC-----cceeeecccCCCH-------H------
Confidence            449999999985 5777787887 68999999996       221 23     3366555533211       0      


Q ss_pred             cccccCCCCCCCeeEEEe-ccccccHHHHHHHHHHcccCCeEEEEecCCCCcH
Q 047371          138 SHEIRGISETEEYDVVIA-NILLNPLPQLADHIVSYAKPGAVVGISGILSEQL  189 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  189 (222)
                              -....|+|.+ ++|.+-...+++ +++  +-|.-+++..+..+..
T Consensus        67 --------iY~~a~lIYSiRPP~El~~~il~-lA~--~v~adlii~pL~~e~~  108 (127)
T PF03686_consen   67 --------IYEGADLIYSIRPPPELQPPILE-LAK--KVGADLIIRPLGGESP  108 (127)
T ss_dssp             --------HHTTEEEEEEES--TTSHHHHHH-HHH--HHT-EEEEE-BTTB--
T ss_pred             --------HhcCCcEEEEeCCChHHhHHHHH-HHH--HhCCCEEEECCCCCCC
Confidence                    1346899998 666664444443 444  3455677766655553

; PDB: 2K4M_A.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=87.31  E-value=2.3  Score=36.29  Aligned_cols=101  Identities=23%  Similarity=0.389  Sum_probs=56.0

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+||..|+|. |..++.+++. +...+++++.++...+.+++.    +..  .  +.......+.    ..     
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~--~--vi~~~~~~~~----~~-----  227 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT--D--IINPKNGDIV----EQ-----  227 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc--E--EEcCCcchHH----HH-----
Confidence            56788888876542 4455555654 434788998887776655532    211  1  1111111110    00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +....+.+.+|+++.....   ...+..+.+.|+++|.++..+
T Consensus       228 -------i~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         228 -------ILELTGGRGVDCVIEAVGF---EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             -------HHHHcCCCCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEEc
Confidence                   0011134568999854322   246777888999999988643

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=87.26  E-value=4.6  Score=35.83  Aligned_cols=118  Identities=22%  Similarity=0.255  Sum_probs=67.0

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHH-------HHHhcCCCCCceeEEecCC
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQ-------NAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~-------~~~~~~~~~~~v~~~~~~~  118 (222)
                      +....++. +.+++...|+|.|.|.....++.+ +...=+|+++....-+.|..       .....|.....+....++.
T Consensus       181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf  260 (419)
T KOG3924|consen  181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF  260 (419)
T ss_pred             HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence            34444444 678899999999999987776654 44556777775544333322       2223333222334444433


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEeccc-ccc-HHHHHHHHHHcccCCeEEEEecC
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANIL-LNP-LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~~~-~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ...     .....+              ....++|++|.. ++. +.--++++..-+++|..++-...
T Consensus       261 ~~~-----~~v~eI--------------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~  309 (419)
T KOG3924|consen  261 LDP-----KRVTEI--------------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP  309 (419)
T ss_pred             CCH-----HHHHHH--------------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence            222     111111              334788888654 332 22225688888999999887543

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.09  E-value=10  Score=32.56  Aligned_cols=115  Identities=15%  Similarity=0.119  Sum_probs=69.1

Q ss_pred             CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++|+-+|+|. | .++..|++.+ ..|+.+--++ .++..++.    |+.     +..... ........          
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~-~~~~l~~~----GL~-----i~~~~~-~~~~~~~~----------   58 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR-RLEALKKK----GLR-----IEDEGG-NFTTPVVA----------   58 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH-HHHHHHhC----CeE-----EecCCC-cccccccc----------
Confidence            3688899997 4 5677788777 5555554444 35555443    331     111111 00000000          


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                         ...-.....+|+|+...=-+...+.++.+...+++...+++....-...+.+...+...
T Consensus        59 ---~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~  117 (307)
T COG1893          59 ---ATDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE  117 (307)
T ss_pred             ---ccChhhcCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence               00001345799999877666688999999999999999888666666666666665544

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=86.50  E-value=4.2  Score=34.60  Aligned_cols=96  Identities=23%  Similarity=0.321  Sum_probs=56.0

Q ss_pred             CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++.+||..|+|. |..+..+++. +...+++++.++...+.+++.    +..  .  +.......+.        ..   
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~--~--vi~~~~~~~~--------~~---  225 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD--E--TVNLARDPLA--------AY---  225 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC--E--EEcCCchhhh--------hh---
Confidence            688888887764 5555556654 444799999988877755442    221  1  1111100000        00   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              ....+.+|+++.....   ...++.+.+.|+++|.++..+
T Consensus       226 --------~~~~~~vd~vld~~g~---~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         226 --------AADKGDFDVVFEASGA---PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             --------hccCCCccEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence                    0012358999864322   345778889999999988643

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=86.48  E-value=16  Score=32.75  Aligned_cols=119  Identities=17%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             CcEEEEccCCCH--HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           60 ELFLDYGTGSGI--LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        60 ~~vLD~G~G~G~--~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++|.-+|.|.-.  ++..+++.+ -+|+++|.++..++....     +.    +.+...+.+.+.       ...+. .+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~-----g~----~~~~e~~l~~~l-------~~~~~-~g   65 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINR-----GE----IHIVEPDLDMVV-------KTAVE-GG   65 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHC-----CC----CCcCCCCHHHHH-------HHHhh-cC
Confidence            357777877632  444555665 589999999988775322     11    111111100000       00000 00


Q ss_pred             cccccCCCCCCCeeEEEecccc----------ccHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHHHHHHh
Q 047371          138 SHEIRGISETEEYDVVIANILL----------NPLPQLADHIVSYAKPGAVVGI-SGILSEQLPRIINRYSE  198 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~----------~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~  198 (222)
                      .....+  .....|+++...+.          ......++.+...+++|..++. ++......+++...+.+
T Consensus        66 ~l~~~~--~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         66 YLRATT--TPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             ceeeec--ccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            000000  12357888875544          2355667888999999887766 56677777777776654

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=86.39  E-value=8.7  Score=32.35  Aligned_cols=49  Identities=14%  Similarity=0.088  Sum_probs=33.6

Q ss_pred             CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          148 EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       148 ~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                      ..+|+++....-.....+++.+...+.++..++.....-...+.+.+.+
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~  115 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYF  115 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhC
Confidence            5689998876666678888999988888877765434433444454443

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=86.27  E-value=3.3  Score=35.78  Aligned_cols=102  Identities=23%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+..  |.+++.+++.-...++++--+++..+.+++.    +.. .-+.+...+   +.    +..    
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd-~vi~y~~~~---~~----~~v----  203 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GAD-HVINYREED---FV----EQV----  203 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCC-EEEcCCccc---HH----HHH----
Confidence            57799999998555  4677778876323777777777666654443    321 011111111   10    111    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              ..+.....+|+|+...    -.+.+....+.|+++|.++..+..
T Consensus       204 --------~~~t~g~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         204 --------RELTGGKGVDVVLDTV----GGDTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             --------HHHcCCCCceEEEECC----CHHHHHHHHHHhccCCEEEEEecC
Confidence                    1112345699999643    245666688889999999985443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=86.19  E-value=7  Score=33.39  Aligned_cols=50  Identities=18%  Similarity=0.018  Sum_probs=37.4

Q ss_pred             CCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          147 TEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       147 ~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                      ...+|+|+..-..+...+.++.+...+++++.++.....-...+.+.+.+
T Consensus        70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~  119 (313)
T PRK06249         70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREIL  119 (313)
T ss_pred             cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHC
Confidence            35689999876666677888899999999998877655555556665554

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=86.07  E-value=2.4  Score=36.87  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc-ccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR-TFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~  132 (222)
                      ++++++||-.|+|. |..+..+++. +..+++++|.++..++.+++    .+..  . .+...+.. .+.    .....+
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~--~-~i~~~~~~~~~~----~~v~~~  252 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT--D-CVNPKDHDKPIQ----QVLVEM  252 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC--E-EEcccccchHHH----HHHHHH
Confidence            56789999998754 4455555554 54479999999998887754    2321  1 11111100 010    000011


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL  185 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  185 (222)
                                   ..+.+|+++-...   -...+..+.+.++++ |.++..+..
T Consensus       253 -------------~~~g~d~vid~~g---~~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         253 -------------TDGGVDYTFECIG---NVKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             -------------hCCCCcEEEECCC---ChHHHHHHHHhhccCCCeEEEEccC
Confidence                         1236899986322   134677778889887 888876543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=86.03  E-value=6.2  Score=32.46  Aligned_cols=95  Identities=22%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCE-EEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAM-FVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.++|-.|+|. |..+..+++....+ +++++.+++..+.+++.    +.. ..+ +.... ..             
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~-~~~-~~~~~-~~-------------  154 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA-DPV-AADTA-DE-------------  154 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC-ccc-cccch-hh-------------
Confidence            55788888887754 45555555543345 99999998887766543    211 011 00000 00             


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 .....+|+++.....   ...+....+.++++|.++..+.
T Consensus       155 -----------~~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         155 -----------IGGRGADVVIEASGS---PSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             -----------hcCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEEEec
Confidence                       023468998854322   3467778889999999887543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.99  E-value=5.9  Score=37.30  Aligned_cols=93  Identities=8%  Similarity=0.004  Sum_probs=53.1

Q ss_pred             CcEEEEccCCCHHHHHHHH---hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           60 ELFLDYGTGSGILGIAAIK---FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .+|+-+|+  |.++..+++   ....+++.+|.+++.++.+++    .+     .....+|..+...     +..     
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~-----L~~-----  459 (601)
T PRK03659        401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLEL-----LRA-----  459 (601)
T ss_pred             CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHH-----HHh-----
Confidence            35555555  444444443   223579999999999888764    23     3467777755421     111     


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                              ..-++.|.+++...-+.....+-...|.+.|...++.
T Consensus       460 --------agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        460 --------AGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             --------cCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence                    1345678888744333222234445555677777766

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=85.53  E-value=3  Score=35.32  Aligned_cols=99  Identities=22%  Similarity=0.332  Sum_probs=56.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.++.+||..|+|. |..+..+++. +...+++++.++...+.+++.    +..    .....+.....    .. .   
T Consensus       157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~----~~-~---  220 (334)
T cd08234         157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT----ETVDPSREDPE----AQ-K---  220 (334)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe----EEecCCCCCHH----HH-H---
Confidence            45788999987542 4455555554 433489999998877766432    221    11111111100    00 0   


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                ....+.+|+++....   ....+..+.+.|+++|.++..+
T Consensus       221 ----------~~~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         221 ----------EDNPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             ----------HhcCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEEEe
Confidence                      003456899996432   1356777888999999988743

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=85.35  E-value=13  Score=30.25  Aligned_cols=99  Identities=11%  Similarity=0.129  Sum_probs=60.5

Q ss_pred             CCcEEEEccCCCH--HHHHH--H-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           59 GELFLDYGTGSGI--LGIAA--I-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        59 ~~~vLD~G~G~G~--~~~~l--a-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      .+.+++..++.|.  .++.|  | +.-.++++.+-.++..+...++.+...++. +.++|..++. +.+..         
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfvvg~~~e~~~~---------  111 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFVVGEAPEEVMP---------  111 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEEecCCHHHHHh---------
Confidence            3578888665442  33333  3 344578899999988888888888777765 3567777653 22211         


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHH-HHHHHHHHcccCCeEEEEe
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLP-QLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (222)
                                   ....+|.++.+.-...+. .+++.+.  +.|.|-+++.
T Consensus       112 -------------~~~~iDF~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~  147 (218)
T PF07279_consen  112 -------------GLKGIDFVVVDCKREDFAARVLRAAK--LSPRGAVVVC  147 (218)
T ss_pred             -------------hccCCCEEEEeCCchhHHHHHHHHhc--cCCCceEEEE
Confidence                         345688888766554444 5555433  4445665553

The function of this family is unknown.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=85.25  E-value=3.7  Score=35.70  Aligned_cols=103  Identities=20%  Similarity=0.338  Sum_probs=58.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      ++++++||-.|+|. |..+..+++. +..+|+++|.++...+.++.    .+..  .+ +...+. ..+.    ...   
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~--~~-i~~~~~~~~~~----~~~---  247 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGAT--DF-INPKDSDKPVS----EVI---  247 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC--cE-eccccccchHH----HHH---
Confidence            56789999888653 4445555554 54479999999988887754    2321  11 111000 0000    000   


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL  185 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  185 (222)
                               ..... +.+|+++-...   -...+..+.+.++++ |.+++.+..
T Consensus       248 ---------~~~~~-~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g~~  288 (365)
T cd08277         248 ---------REMTG-GGVDYSFECTG---NADLMNEALESTKLGWGVSVVVGVP  288 (365)
T ss_pred             ---------HHHhC-CCCCEEEECCC---ChHHHHHHHHhcccCCCEEEEEcCC
Confidence                     00112 46899985332   135667788889885 888876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=85.08  E-value=3.4  Score=35.54  Aligned_cols=102  Identities=21%  Similarity=0.215  Sum_probs=57.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+||-.|+|. |..+..+++. +..++++++.++...+.+++.    +..   ..+...+. .+.       ..  
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~---~~i~~~~~-~~~-------~~--  232 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GAT---IVLDPTEV-DVV-------AE--  232 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEECCCcc-CHH-------HH--
Confidence            46788888887543 3444445554 544899999998887777542    321   11111110 110       00  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             +......+.+|+++.....   ...++.+.+.|+++|.++..+.
T Consensus       233 -------l~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         233 -------VRKLTGGGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             -------HHHHhCCCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence                   0011133458999964422   3467778889999999887544

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=84.81  E-value=9.7  Score=29.84  Aligned_cols=93  Identities=16%  Similarity=0.242  Sum_probs=54.5

Q ss_pred             EEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-------cC-CC-------CCceeEEecCCcccccc
Q 047371           62 FLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-------NN-IG-------PKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        62 vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~-~~-------~~~v~~~~~~~~~~~~~  124 (222)
                      |.-+|+|+ | .++..++..| -+|+.+|.++..++.+++.+..       .+ +.       ..++.+. .+       
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~d-------   72 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TD-------   72 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SS-------
T ss_pred             EEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cC-------
Confidence            55678876 3 3555666665 6899999999999988777653       11 10       0011110 11       


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEeccccc--cHHHHHHHHHHcccCCeEEEEe
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--PLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                         +......|+|+-..+-+  ...+++.++.+++.|+..+..+
T Consensus        73 -------------------l~~~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn  113 (180)
T PF02737_consen   73 -------------------LEEAVDADLVIEAIPEDLELKQELFAELDEICPPDTILASN  113 (180)
T ss_dssp             -------------------GGGGCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred             -------------------HHHHhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEec
Confidence                               11222689999765433  2456899999999999887774

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=84.77  E-value=3.4  Score=35.19  Aligned_cols=101  Identities=27%  Similarity=0.329  Sum_probs=58.4

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +.++.+||..|+|. |..+..+++....+++++.-+++..+.+++.    +..  .  +.......+.    ..      
T Consensus       157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~--~--v~~~~~~~~~----~~------  218 (337)
T cd08261         157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GAD--D--TINVGDEDVA----AR------  218 (337)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCC--E--EecCcccCHH----HH------
Confidence            56788999987653 5566666665446789998888777766432    221  1  1111100110    00      


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                            +..+.+...+|+++....   -...+..+.+.|+++|.++..+
T Consensus       219 ------l~~~~~~~~vd~vld~~g---~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         219 ------LRELTDGEGADVVIDATG---NPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             ------HHHHhCCCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEc
Confidence                  001113456899986431   1356777888999999988643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=84.72  E-value=10  Score=32.00  Aligned_cols=87  Identities=15%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +.+|+..+|+|+-+|..+-.+.+.+ -.|+++|-.+-+    . ++-..|    .++-...|.-.+.             
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr~-m~V~aVDng~ma----~-sL~dtg----~v~h~r~DGfk~~-------------  265 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKRN-MRVYAVDNGPMA----Q-SLMDTG----QVTHLREDGFKFR-------------  265 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhcc-eEEEEeccchhh----h-hhhccc----ceeeeeccCcccc-------------
Confidence            3478899999999999999988875 579999976522    1 111222    4555555443332             


Q ss_pred             cccccccCCCC-CCCeeEEEeccccccHHHHHHHHHHcccCC
Q 047371          136 LSSHEIRGISE-TEEYDVVIANILLNPLPQLADHIVSYAKPG  176 (222)
Q Consensus       136 ~~~~~~~~~~~-~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg  176 (222)
                                | ..+.|..+|+.+-. ...+.+.+...|..|
T Consensus       266 ----------P~r~~idWmVCDmVEk-P~rv~~li~~Wl~nG  296 (358)
T COG2933         266 ----------PTRSNIDWMVCDMVEK-PARVAALIAKWLVNG  296 (358)
T ss_pred             ----------cCCCCCceEEeehhcC-cHHHHHHHHHHHHcc
Confidence                      4 66799999988654 334444455555554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=84.63  E-value=6.1  Score=33.63  Aligned_cols=89  Identities=24%  Similarity=0.295  Sum_probs=54.7

Q ss_pred             CcEEEEccCC-C-HHHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           60 ELFLDYGTGS-G-ILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        60 ~~vLD~G~G~-G-~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .+|.-+|+|. | .++..+.+.+. .+|+++|.++..++.+++    .+..   ... ..+...                
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~---~~~-~~~~~~----------------   62 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG---DRV-TTSAAE----------------   62 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC---cee-cCCHHH----------------
Confidence            4688888886 3 34444554443 479999999987776643    2321   000 011000                


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                               .....|+|+...+......+++.+...++++..++.
T Consensus        63 ---------~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         63 ---------AVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             ---------HhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence                     123579999877766667778888888888876554

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=84.37  E-value=13  Score=31.33  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=54.6

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.+||-.|+|. |..+..+++....++++++.++...+.+++    .+..  .+ +...+  ..             
T Consensus       153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~--~~-~~~~~--~~-------------  210 (319)
T cd08242         153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE--TV-LPDEA--ES-------------  210 (319)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc--EE-eCccc--cc-------------
Confidence            45788888887542 333344444433569999999888877765    2322  11 11000  00             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                 ..+.+|+++....   -...+..+.+.|+++|.++..
T Consensus       211 -----------~~~~~d~vid~~g---~~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         211 -----------EGGGFDVVVEATG---SPSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             -----------cCCCCCEEEECCC---ChHHHHHHHHHhhcCCEEEEE
Confidence                       3456899986421   134567778889999998863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=84.05  E-value=10  Score=29.99  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=30.1

Q ss_pred             CeeEEEeccc--c--------ccHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHHHH
Q 047371          149 EYDVVIANIL--L--------NPLPQLADHIVSYAKPGAVVGI-SGILSEQLPRIINR  195 (222)
Q Consensus       149 ~~D~v~~~~~--~--------~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~  195 (222)
                      ..|+++...+  .        .++...++.+.+.++++..+++ ++.+....+++...
T Consensus        76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~  133 (185)
T PF03721_consen   76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKP  133 (185)
T ss_dssp             H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHH
T ss_pred             ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhh
Confidence            4677776432  2        2256788999999999877777 57777766644433

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=83.98  E-value=7.5  Score=33.73  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=58.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      ++++++||-.|+|. |..+..+++. +..++++++.++..++.+++    .+..  . .+...+. ..+.    ..... 
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~--~-~i~~~~~~~~~~----~~v~~-  252 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT--E-FVNPKDHDKPVQ----EVIAE-  252 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc--e-EEcccccchhHH----HHHHH-
Confidence            56789999988653 4444555554 54489999999988887754    2321  1 1111100 0010    00001 


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL  185 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  185 (222)
                                 . ..+.+|+++-...   -...+..+.+.++++ |.+++.+..
T Consensus       253 -----------~-~~~~~d~vid~~G---~~~~~~~~~~~~~~~~g~~v~~g~~  291 (369)
T cd08301         253 -----------M-TGGGVDYSFECTG---NIDAMISAFECVHDGWGVTVLLGVP  291 (369)
T ss_pred             -----------H-hCCCCCEEEECCC---ChHHHHHHHHHhhcCCCEEEEECcC
Confidence                       1 1236898885332   134666677888996 898876554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=83.93  E-value=4.4  Score=34.62  Aligned_cols=101  Identities=12%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|++  .|..+..+++....++++++.++...+.+++.+   +..  .+ +...+...+.    ..     
T Consensus       149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~--~v-i~~~~~~~~~----~~-----  213 (338)
T cd08295         149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD--DA-FNYKEEPDLD----AA-----  213 (338)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc--ee-EEcCCcccHH----HH-----
Confidence            5688999988863  356666677654467999998888777776532   322  11 1111110110    00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +... ..+.+|+++....    ...+..+.++|+++|.++..+
T Consensus       214 -------i~~~-~~~gvd~v~d~~g----~~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         214 -------LKRY-FPNGIDIYFDNVG----GKMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             -------HHHh-CCCCcEEEEECCC----HHHHHHHHHHhccCcEEEEec
Confidence                   0011 1246899985432    256778889999999998754

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=83.55  E-value=10  Score=32.82  Aligned_cols=97  Identities=13%  Similarity=0.114  Sum_probs=54.7

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++.+++-.|+|. |..+..+++....++++++.++.....+.+.   .+..  .+ +...+...+              
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~--~~-i~~~~~~~~--------------  238 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD--DY-LVSSDAAEM--------------  238 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc--EE-ecCCChHHH--------------
Confidence            5788888887654 4555566665345788888877655444332   3321  11 111110000              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                            ..  ....+|+++-...   ....+..+.+.++++|.++..+.
T Consensus       239 ------~~--~~~~~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        239 ------QE--AADSLDYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ------HH--hcCCCcEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence                  00  1124888885432   13466777889999999888654

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=83.50  E-value=11  Score=28.15  Aligned_cols=84  Identities=19%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             cEEEEccCCC---HHHHHHHHhCCCEEEEEeCC--hHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           61 LFLDYGTGSG---ILGIAAIKFGAAMFVGVDID--PQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        61 ~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++|-.|+++|   .++..+++.+..+++.+.-+  ....+.....+...+   .++.+...|..... +.........  
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~-~~~~~~~~~~--   75 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPE-SIRALIEEVI--   75 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHH-HHHHHHHHHH--
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---cccccccccccccc-cccccccccc--
Confidence            4677777765   35555666667789999988  555555555555444   36777777764431 1111111110  


Q ss_pred             cccccccCCCCCCCeeEEEecccc
Q 047371          136 LSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                               ...+++|+++.+...
T Consensus        76 ---------~~~~~ld~li~~ag~   90 (167)
T PF00106_consen   76 ---------KRFGPLDILINNAGI   90 (167)
T ss_dssp             ---------HHHSSESEEEEECSC
T ss_pred             ---------ccccccccccccccc
Confidence                     035679999987653

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=83.14  E-value=4.8  Score=33.49  Aligned_cols=75  Identities=25%  Similarity=0.360  Sum_probs=48.1

Q ss_pred             HHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCee
Q 047371           73 GIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYD  151 (222)
Q Consensus        73 ~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  151 (222)
                      +..+.+.+ ..+|+|.|.++..++.|.+.    |+..    ....+.+                          .-..+|
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~----~~~~~~~--------------------------~~~~~D   47 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIID----EASTDIE--------------------------AVEDAD   47 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS----EEESHHH--------------------------HGGCCS
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee----eccCCHh--------------------------HhcCCC
Confidence            44555554 57999999999998888643    3321    1111000                          123469


Q ss_pred             EEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          152 VVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       152 ~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                      +|+...|.....++++++...+++|+.+.=
T Consensus        48 lvvlavP~~~~~~~l~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen   48 LVVLAVPVSAIEDVLEEIAPYLKPGAIVTD   77 (258)
T ss_dssp             EEEE-S-HHHHHHHHHHHHCGS-TTSEEEE
T ss_pred             EEEEcCCHHHHHHHHHHhhhhcCCCcEEEE
Confidence            999988888899999999999999876654

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=83.06  E-value=4.5  Score=34.54  Aligned_cols=101  Identities=18%  Similarity=0.308  Sum_probs=55.8

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.++.++|-.|+|. |..+..+++. +..++++++.++.....+++    .+.. .-+.....   .+.    ..     
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~---~~~----~~-----  226 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGAT-HTVNSAKG---DAI----EQ-----  226 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-ceeccccc---cHH----HH-----
Confidence            45678877776543 3344445554 43688999988877666553    2321 01111110   000    00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +..+.....+|+++....   -...++.+.+.|+++|.++..+
T Consensus       227 -------i~~~~~~~~~d~vld~~g---~~~~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         227 -------VLELTDGRGVDVVIEAVG---IPATFELCQELVAPGGHIANVG  266 (345)
T ss_pred             -------HHHHhCCCCCCEEEECCC---CHHHHHHHHHhccCCcEEEEec
Confidence                   001113456899985432   2345788889999999988643

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.43  E-value=24  Score=29.51  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=61.7

Q ss_pred             cEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH-------hcCC-CCC-------ceeEEecCCccccc
Q 047371           61 LFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA-------LNNI-GPK-------KIKLHLVPDRTFTA  123 (222)
Q Consensus        61 ~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~-------~~~~-~~~-------~v~~~~~~~~~~~~  123 (222)
                      +|--+|+|.  +.++..++..+ .+|+++|.++..++.++.++.       ..+. ...       ++.+. .+      
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~------   76 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TD------   76 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CC------
Confidence            466778875  34555666665 489999999999877654332       1221 000       11100 00      


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                                          +.....+|+|+...+-..  ...++..+.+.++++..+..+ ...-...++.+.+
T Consensus        77 --------------------~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~-ts~~~~~~la~~~  130 (282)
T PRK05808         77 --------------------LDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATN-TSSLSITELAAAT  130 (282)
T ss_pred             --------------------HHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEEC-CCCCCHHHHHHhh
Confidence                                112345799997654332  357889999999998777443 3334444555544

>cd08293 PTGR2 Prostaglandin reductase

Probab=82.28  E-value=12  Score=31.84  Aligned_cols=100  Identities=18%  Similarity=0.268  Sum_probs=57.7

Q ss_pred             hcCC--CcEEEEccC--CCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           56 IKGG--ELFLDYGTG--SGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        56 ~~~~--~~vLD~G~G--~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      ++++  ++||-.|++  .|..+..+++. +..++++++.+++..+.+++.   .|..  .+ +. .....+.    ..  
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~--~v-i~-~~~~~~~----~~--  216 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD--AA-IN-YKTDNVA----ER--  216 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc--EE-EE-CCCCCHH----HH--
Confidence            4455  889888863  35666667765 433799999988777766553   2332  11 11 1111110    00  


Q ss_pred             cchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                +..... +.+|+++....-    ..+..+.+.|+++|.++..+
T Consensus       217 ----------i~~~~~-~gvd~vid~~g~----~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         217 ----------LRELCP-EGVDVYFDNVGG----EISDTVISQMNENSHIILCG  254 (345)
T ss_pred             ----------HHHHCC-CCceEEEECCCc----HHHHHHHHHhccCCEEEEEe
Confidence                      011112 569999854322    23577888999999988743

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=81.86  E-value=1.5  Score=34.94  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHcccCCeEEEEe
Q 047371          162 LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +...+.++.++|||+|.+++.
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~   55 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIF   55 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCeeEEEE
Confidence            456789999999999999985

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=81.83  E-value=12  Score=34.80  Aligned_cols=95  Identities=13%  Similarity=0.045  Sum_probs=51.9

Q ss_pred             CcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           60 ELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        60 ~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .+++-+|||. |. ++..+.+.+ ..++.+|.+++.++.+++.    +     .....+|..+...     ...      
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~~----g-----~~~i~GD~~~~~~-----L~~------  476 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRER----G-----IRAVLGNAANEEI-----MQL------  476 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC----C-----CeEEEcCCCCHHH-----HHh------
Confidence            4566666665 33 222333344 5799999999988888642    2     3467777654311     111      


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             ..-+++|.+++...-+.-...+-...+...|+-.++.-
T Consensus       477 -------a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        477 -------AHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIAR  514 (558)
T ss_pred             -------cCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence                   14457887775433322222232334455677666653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=81.63  E-value=15  Score=34.78  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=52.8

Q ss_pred             CcEEEEccCC-CHHH-HHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           60 ELFLDYGTGS-GILG-IAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        60 ~~vLD~G~G~-G~~~-~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .+|+-+|+|. |... ..+.+.+ ..++.+|.++..++.+++.    +     ...+.+|......     +..      
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~----g-----~~v~~GDat~~~~-----L~~------  459 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRKF----G-----MKVFYGDATRMDL-----LES------  459 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhc----C-----CeEEEEeCCCHHH-----HHh------
Confidence            5677777776 4433 2333333 5799999999998888652    3     3467777755421     110      


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                             ..-+++|.+++...-+.....+-...+.+.|+-.++.
T Consensus       460 -------agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        460 -------AGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             -------cCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence                   1345678887643322222233334444556655554

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=81.57  E-value=6.7  Score=35.33  Aligned_cols=89  Identities=17%  Similarity=0.234  Sum_probs=54.3

Q ss_pred             CCCcEEEEccCC-CHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGS-GILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .|++|+-+|+|. |......+ ..+ .+|+.+|.++.....+..    .+..     .  .+...               
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~----~G~~-----v--~~l~e---------------  263 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAM----DGFR-----V--MTMEE---------------  263 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHh----cCCE-----e--cCHHH---------------
Confidence            689999999987 43333333 345 589999999866544432    1221     1  11111               


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHH-HHHHcccCCeEEEEecCCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLAD-HIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~  186 (222)
                                ....+|+++....   ...++. .....+|+|++++..+...
T Consensus       264 ----------al~~aDVVI~aTG---~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        264 ----------AAELGDIFVTATG---NKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             ----------HHhCCCEEEECCC---CHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence                      1225799986432   234554 6788899999998876544

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=81.51  E-value=4.7  Score=34.04  Aligned_cols=99  Identities=14%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|.+||-.|++  .|..+..+++....++++++.++...+.+++    .+..  .+ +. .....+.    ..     
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~--~v-i~-~~~~~~~----~~-----  203 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD--AV-FN-YKTVSLE----EA-----  203 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--EE-Ee-CCCccHH----HH-----
Confidence            5678899888743  3566666776544679999988887777755    2332  11 11 1111110    00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +... ..+.+|+++....    ...+....+.|+++|.++..+
T Consensus       204 -------v~~~-~~~gvd~vld~~g----~~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         204 -------LKEA-APDGIDCYFDNVG----GEFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             -------HHHH-CCCCcEEEEECCC----HHHHHHHHHhhccCCEEEEEc
Confidence                   0011 1246899985322    255678889999999988643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR00936 ahcY adenosylhomocysteinase

Probab=81.39  E-value=8.3  Score=34.52  Aligned_cols=100  Identities=15%  Similarity=0.099  Sum_probs=58.8

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..|++|+-+|+|. |......++.-..+|+++|.++.....|..    .+..     .  .+.+.               
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G~~-----v--~~lee---------------  246 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DGFR-----V--MTMEE---------------  246 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cCCE-----e--CCHHH---------------
Confidence            4699999999998 544444444323689999999865433332    2321     1  11111               


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHH-HHHHcccCCeEEEEecCCCC--cHHHHHHH
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLAD-HIVSYAKPGAVVGISGILSE--QLPRIINR  195 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~--~~~~~~~~  195 (222)
                                .....|+++....   ...++. .....+|+|++++..+....  +...+.+.
T Consensus       247 ----------al~~aDVVItaTG---~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~  296 (406)
T TIGR00936       247 ----------AAKIGDIFITATG---NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL  296 (406)
T ss_pred             ----------HHhcCCEEEECCC---CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence                      1124699887432   244454 47788999999998765432  33444443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=81.37  E-value=6  Score=33.85  Aligned_cols=104  Identities=26%  Similarity=0.338  Sum_probs=57.1

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+||-.|+|. |..+..+++. +...+++++-++...+.+++.    +..  .  +...+...+.    .....  
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~--~--vi~~~~~~~~----~~~~~--  225 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT--H--TVNVRTEDTP----ESAEK--  225 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc--E--Eeccccccch----hHHHH--
Confidence            56788888877654 4455556655 433489998888777666442    321  1  1111110000    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +..+.....+|+++.....   ...++.+.+.++++|.++..+
T Consensus       226 -------~~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         226 -------IAELLGGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             -------HHHHhCCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence                   0011134569999964322   236778888999999988643

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK07904 short chain dehydrogenase; Provisional

Probab=81.14  E-value=9.9  Score=31.15  Aligned_cols=62  Identities=13%  Similarity=0.014  Sum_probs=37.4

Q ss_pred             cCCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHH-HHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           57 KGGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQV-IKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      ..++++|-.|++.|.   ++..+++.+..+|+.++.++.. ++.+.+.+...+.  .++.+...|...
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~--~~v~~~~~D~~~   71 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA--SSVEVIDFDALD   71 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC--CceEEEEecCCC
Confidence            456788888886552   3333444444689999988764 6655554444332  256666666644

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=80.73  E-value=24  Score=29.75  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=54.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.++|-.|+|. |..+..+++....++++++-++...+.+++    .+..   ..+ ...  ..             
T Consensus       165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~-~~~--~~-------------  221 (329)
T cd08298         165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAG-DSD--DL-------------  221 (329)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEe-ccC--cc-------------
Confidence            45677888777653 334444555544789999888876666643    2321   001 000  00             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                 ..+.+|+++....   ....++.+.+.++++|.++..+
T Consensus       222 -----------~~~~vD~vi~~~~---~~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         222 -----------PPEPLDAAIIFAP---VGALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             -----------CCCcccEEEEcCC---cHHHHHHHHHHhhcCCEEEEEc
Confidence                       2235788875322   2356888899999999988754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PLN02494 adenosylhomocysteinase

Probab=80.73  E-value=6.1  Score=36.03  Aligned_cols=89  Identities=20%  Similarity=0.172  Sum_probs=53.8

Q ss_pred             cCCCcEEEEccCC-CHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGS-GILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      -.|++|+-+|+|. |......+ ..+ .+|+++|.++.....|..    .+..     ..  +.+.              
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~----~G~~-----vv--~leE--------------  305 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALM----EGYQ-----VL--TLED--------------  305 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHh----cCCe-----ec--cHHH--------------
Confidence            3589999999997 43333333 345 589999999865444432    2221     11  1111              


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHH-HHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQL-ADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~-l~~~~~~LkpgG~l~~~~~~  185 (222)
                                 .....|+++.....   ..+ .......+|+|++++..+..
T Consensus       306 -----------al~~ADVVI~tTGt---~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        306 -----------VVSEADIFVTTTGN---KDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             -----------HHhhCCEEEECCCC---ccchHHHHHhcCCCCCEEEEcCCC
Confidence                       11247999874432   233 36777899999999987653

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=80.71  E-value=7.6  Score=33.47  Aligned_cols=103  Identities=21%  Similarity=0.278  Sum_probs=55.7

Q ss_pred             cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+||-.|+|. |..+..+++. +..++++++.++...+.+++    .+..  .  +.........    ....    
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~--~--vi~~~~~~~~----~~~~----  239 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD--A--TIDIDELPDP----QRRA----  239 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC--e--EEcCcccccH----HHHH----
Confidence            4688888887643 3444445554 44489999988877666543    2332  1  1111100000    0000    


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                           .+......+.+|+++.....   ...+....+.++++|.++..+
T Consensus       240 -----~i~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         240 -----IVRDITGGRGADVVIEASGH---PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             -----HHHHHhCCCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEEc
Confidence                 00111134568999854321   345677888999999998754

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=80.57  E-value=6.5  Score=33.49  Aligned_cols=100  Identities=27%  Similarity=0.429  Sum_probs=55.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++.+||-.|+|. |..+..+++. +...+++++-++...+.++.    .+..  .  +........     ..     
T Consensus       157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~--~--~~~~~~~~~-----~~-----  218 (343)
T cd08236         157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD--D--TINPKEEDV-----EK-----  218 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC--E--EecCccccH-----HH-----
Confidence            55788898887644 4455555554 43349999888876665532    2321  1  111110000     00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +........+|+++....   -...+..+.+.|+++|.++..+
T Consensus       219 -------~~~~~~~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         219 -------VRELTEGRGADLVIEAAG---SPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             -------HHHHhCCCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence                   001113345999986421   1346677888999999988754

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=80.55  E-value=21  Score=31.54  Aligned_cols=61  Identities=15%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             CCcchhHHHHHHHHhhhcCCCcEEEEccCCCH----HHHHHHHh----CCCEEEEEeC----ChHHHHHHHHHHH
Q 047371           40 GEHATTKLCLLLLQSLIKGGELFLDYGTGSGI----LGIAAIKF----GAAMFVGVDI----DPQVIKSAHQNAA  102 (222)
Q Consensus        40 ~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~----~~~~la~~----~~~~v~gvD~----s~~~l~~a~~~~~  102 (222)
                      ++.-..+.+++.+...  +.-+|+|+|.|.|.    +...++..    +.-+|+|++.    +...++.+.+++.
T Consensus        94 a~~taNqaIleA~~g~--~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~  166 (374)
T PF03514_consen   94 AHFTANQAILEAFEGE--RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA  166 (374)
T ss_pred             hhhchhHHHHHHhccC--cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence            3455666666666433  34589999999993    33445543    2347999999    7778887776654

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=80.45  E-value=6.5  Score=34.14  Aligned_cols=101  Identities=18%  Similarity=0.326  Sum_probs=58.0

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+||-.|+|. |..+..+++. +...++++|.++...+.+++    .+..  .  +.......+.       ..+ 
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~--~i~~~~~~~~-------~~v-  247 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--H--VINPKEEDLV-------AAI-  247 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--E--EecCCCcCHH-------HHH-
Confidence            45788888887654 4555555654 55579999999887776654    2221  1  1111111110       000 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              .... ...+|+++.....   ...+..+.+.++++|.++..+.
T Consensus       248 --------~~~~-~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         248 --------REIT-GGGVDYALDTTGV---PAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             --------HHHh-CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEeCc
Confidence                    0111 3458999864322   2457778888999999887543

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.33  E-value=12  Score=31.53  Aligned_cols=120  Identities=12%  Similarity=0.154  Sum_probs=62.6

Q ss_pred             CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc--CCC----CCceeEEecCCccccccccccccc
Q 047371           60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN--NIG----PKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~----~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      .+|.-+|+|. | .++..++..+ .+|+.+|.++..++.+++.+...  ++.    ...+.  ........        .
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~--~~~~~~~~--------~   72 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMS--EDEAKAIM--------A   72 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCC--HHHHHHHH--------h
Confidence            3577788886 3 3555666665 48999999999998876654321  110    00000  00000000        0


Q ss_pred             chhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                      .+..  .   .++......|+|+...+-..  ...+++++.+.++++..+. +....-...++.+.+
T Consensus        73 ~i~~--~---~~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~-S~tsg~~~~~la~~~  133 (291)
T PRK06035         73 RIRT--S---TSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA-SNTSGIMIAEIATAL  133 (291)
T ss_pred             CcEe--e---CCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE-EcCCCCCHHHHHhhc
Confidence            0000  0   00001245799997665443  4567888888888887654 333334445555544

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=80.23  E-value=4.8  Score=34.48  Aligned_cols=44  Identities=20%  Similarity=0.154  Sum_probs=35.8

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      .|.+|+-+|.|...+...+++.+ .+|.++|+++..+..-+..+.
T Consensus        63 ~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ahiAln~lkla  106 (414)
T COG5379          63 IGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNPAHIALNRLKLA  106 (414)
T ss_pred             CCcEEEEecCCcchHHHHhhcCC-ceeEEEeCCHHHHHHHHHHHH
Confidence            57889999999888888887776 789999999998877655443

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=80.17  E-value=4.5  Score=33.92  Aligned_cols=39  Identities=21%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh------CCCEEEEEeCChHHH
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF------GAAMFVGVDIDPQVI   94 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~------~~~~v~gvD~s~~~l   94 (222)
                      +.+...++|+|||.|.++..++..      +...++.+|-.....
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~   60 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH   60 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence            566779999999999999988763      346799999866443

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
3grz_A	205	Crystal Structure Of Ribosomal Protein L11 Methylas		2e-17
1ufk_A	254	Crystal Structure Of Tt0836 Length = 254		6e-14
3cjt_A	254	Ribosomal Protein L11 Methyltransferase (prma) In C		8e-13

>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From Lactobacillus Delbrueckii Subsp. Bulgaricus Length = 205

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 36/202 (17%)
Query: 3   FHPVEVTKGLWIVPEWST-PPDVQATNII-LNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
           +H + +++ L IVPEW    P  +   II L+PGLAFGTG H TT+         +    
Sbjct: 3   YHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPL 62
Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
              D GTGSGIL IAA K GA   +  DI  + + +A +NAALN I    ++        
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQ-------- 114
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIAN----ILLNPLPQLADHIVSYAKPG 176
              S+   VDG                 ++D+++AN    ILL+ +PQL  H+    + G
Sbjct: 115 -KTSLLADVDG-----------------KFDLIVANILAEILLDLIPQLDSHL---NEDG 153
Query: 177 AVVGISGILSEQLPRIINRYSE 198
            V+  SGI   QLP+I    +E
Sbjct: 154 QVI-FSGIDYLQLPKIEQALAE 174

>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836 Length = 254

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 29  IILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVD 88
           +++ PG+AFGTG H TT+         ++ G+  LD GTGSG+L IAA K G    +GVD
Sbjct: 91  LVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKA-LGVD 149
Query: 89  IDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETE 148
           IDP V+  A  NA  N + P+ ++  L     F                           
Sbjct: 150 IDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGP------------------------- 184
Query: 149 EYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRI 192
            +D+++AN+       LA        PG    ++GIL ++ P +
Sbjct: 185 -FDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLV 227

>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex With Dimethylated Ribosomal Protein L11 Length = 254

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 29  IILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVD 88
           +++ PG+AFGTG   TT+         ++ G+  LD GTGSG+L IAA K G    +GVD
Sbjct: 91  LVIEPGMAFGTGHAETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKA-LGVD 149
Query: 89  IDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETE 148
           IDP V+  A  NA  N + P+ ++  L     F                           
Sbjct: 150 IDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGP------------------------- 184
Query: 149 EYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRI 192
            +D+++AN+       LA        PG    ++GIL ++ P +
Sbjct: 185 -FDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLV 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	1e-75
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	2e-67
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	1e-22
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	3e-13
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	2e-12
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-09
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	6e-09
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	9e-09
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	2e-08
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	6e-08
3lpm_A	259	Putative methyltransferase; structural genomics, p	7e-08
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	1e-07
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	1e-07
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	8e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-06
2h00_A	254	Methyltransferase 10 domain containing protein; st	3e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	3e-06
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	4e-06
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	7e-06
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-05
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	1e-05
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	3e-05
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	3e-05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	3e-05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	6e-05
3f4k_A	257	Putative methyltransferase; structural genomics, P	6e-05
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	7e-05
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	7e-05
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	9e-05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	9e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-04
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	1e-04
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	1e-04
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-04
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-04
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	2e-04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	2e-04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	3e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	3e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	3e-04
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	4e-04
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	4e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-04
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	5e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-04
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	5e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	6e-04
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	7e-04
2b3t_A	276	Protein methyltransferase HEMK; translation termin	7e-04
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	7e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	7e-04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-04
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	8e-04

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score =  225 bits (577), Expect = 1e-75
 Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 29/219 (13%)

Query: 3   FHPVEVTKGLWIVPEW--STPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           +H + +++ L IVPEW    P       I L+PGLAFGTG H TT+L +L ++  +    
Sbjct: 3   YHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPL 62

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
              D GTGSGIL IAA K GA   +  DI  + + +A +NAALN I    ++   +    
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA-- 120

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
                                       ++D+++ANIL   L  L   + S+      V 
Sbjct: 121 ------------------------DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVI 156

Query: 181 ISGILSEQLPRIINRYSE-FLEDILVSEKDDWRCVSGTK 218
            SGI   QLP+I    +E   +  L      W  ++ ++
Sbjct: 157 FSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISR 195

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score =  207 bits (528), Expect = 2e-67
 Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 30/219 (13%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
               P        ++  W T        +++ PG+AFGTG H TT+L L  L   ++ G+
Sbjct: 65  RDLKPALAPP-FVVLAPWHTWEG-AEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGD 122

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             LD GTGSG+L IAA K G    +GVDIDP V+  A  NA  N           V  R 
Sbjct: 123 KVLDLGTGSGVLAIAAEKLGGKA-LGVDIDPMVLPQAEANAKRNG----------VRPRF 171

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
              S+   +                    +D+++AN+       LA        PG    
Sbjct: 172 LEGSLEAAL----------------PFGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

Query: 181 ISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTK 218
           ++GIL ++ P +    +      +  + + +W  ++  +
Sbjct: 216 LTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 90.1 bits (223), Expect = 1e-22
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 33/163 (20%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS 96
           + T         + +      GG   +D GTG+GIL   +   GA      DIDP  I++
Sbjct: 30  YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET 89

Query: 97  AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIAN 156
           A +N    N                       +   V  +S           +YD  I N
Sbjct: 90  AKRNCGGVNF----------------------MVADVSEIS----------GKYDTWIMN 117

Query: 157 ILLNPLPQLAD-HIVSYAKPGAVVGISGILSEQLPRIINRYSE 198
                + + +D   +  A   ++   S   ++    +   +S 
Sbjct: 118 PPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSA 160

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 65.1 bits (158), Expect = 3e-13
 Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 30/164 (18%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS 96
           + T  +A ++L  L        G++  D G G+G+L   A+  GA   + V++D + +  
Sbjct: 28  YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV 87

Query: 97  AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIAN 156
             +N        K     +                                   D+VI N
Sbjct: 88  LIENLGEFKGKFKVFIGDVSEFN----------------------------SRVDIVIMN 119

Query: 157 ILLNPLPQLAD--HIVSYAKPGAVVGISGILSEQLPRIINRYSE 198
                  + AD   ++   +   VV    +   ++ R I ++S 
Sbjct: 120 PPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSW 163

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 21/152 (13%), Positives = 50/152 (32%), Gaps = 26/152 (17%)

Query: 47  LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
           L + L +      ++ +D G G+G + +        ++  +D +P+ I +   N   + +
Sbjct: 24  LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVRRVY-AIDRNPEAISTTEMNLQRHGL 80

Query: 107 GPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLA 166
           G                         V  +       + +  + D+ +       L ++ 
Sbjct: 81  GDN-----------------------VTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL 117

Query: 167 DHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198
             I    KPG  + ++ IL E     +    +
Sbjct: 118 RIIKDKLKPGGRIIVTAILLETKFEAMECLRD 149

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 16/157 (10%), Positives = 42/157 (26%), Gaps = 10/157 (6%)

Query: 56  IKGGELFLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH 114
                   D G G+G  G+A A +   A     +   ++ + A ++  L +      ++ 
Sbjct: 34  DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93

Query: 115 LV--------PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLA 166
           ++          R      +E    V+     ++       +        +         
Sbjct: 94  VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWI 153

Query: 167 DHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDI 203
               +    G  + +     + +  II         +
Sbjct: 154 RTASAIMVSGGQLSLI-SRPQSVAEIIAACGSRFGGL 189

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG 107
            + L++ ++GGE+ L+ GTG   +    A KF        ++D +  + A +N   NN  
Sbjct: 46  YIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSN 105

Query: 108 PKKIKLHLVPDRTFTASMNERVDGVVE---YLSSHEIR 142
              ++L           +    D +     Y      R
Sbjct: 106 ---VRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGR 140

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFV-GVDIDPQVIKSAHQNAALNNIG 107
           L  + S I   E   D G+    L   A+K   A F    ++     +SA +    + + 
Sbjct: 12  LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT 71

Query: 108 PKKIKLHLVPDRTFTASMNERVDGVV 133
            ++I +    +        + +D +V
Sbjct: 72  -EQIDVRKG-NGLAVIEKKDAIDTIV 95

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFV-GVDIDPQVIKSAHQNAALNNIG 107
           L  + + +  G   LD G+    L I  ++ G   F    ++     +SA +N + + + 
Sbjct: 12  LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT 71

Query: 108 PKKIKLHLVPDRTFTASMNERVDGVV 133
             KI + L  +        + +D + 
Sbjct: 72  -SKIDVRLA-NGLSAFEEADNIDTIT 95

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 50  LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP 108
           +L++++ +   +  LD G G G++GIA      +     DI+ + IK A +N  LNN+  
Sbjct: 43  ILVENVVVDKDDDILDLGCGYGVIGIALADEVKST-TMADINRRAIKLAKENIKLNNLDN 101

Query: 109 KKIKLHL------VPDRTF 121
             I++        V DR +
Sbjct: 102 YDIRVVHSDLYENVKDRKY 120

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 63  LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
           +D  +G+GI+ +       A  VGV+I  ++   A ++ A N +  +   +     +   
Sbjct: 54  IDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD 113

Query: 123 ASMNERVDGVVE---YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV 179
               ER D V     Y ++ +    +  E + +    ++   L        S  K G   
Sbjct: 114 LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMC-TLEDTIRVAASLLKQGGKA 172

Query: 180 GISGILSEQLPRIIN 194
                  E+L  II+
Sbjct: 173 NFV-HRPERLLDIID 186

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 50.3 bits (119), Expect = 1e-07
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG 107
           L +L+     G   LD G   G L ++ A K+G +  VG+DID ++I SA QN       
Sbjct: 37  LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSE 96

Query: 108 PKKIKLHLVPDRTFTASMN 126
             ++    +          
Sbjct: 97  ELRLPPQTLEGDPGAEGEE 115

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFV-GVDIDPQVIKSAHQNAALNNIG 107
           L L+ S +  G + LD G+    L I  ++ G        ++     +SA +N   + + 
Sbjct: 6   LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK 65

Query: 108 PK 109
            K
Sbjct: 66  EK 67

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 19/105 (18%)

Query: 50  LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK 109
           L  +  ++     L+  + +G   ++A+  G +  V VD   + +  A QN  LN +   
Sbjct: 213 LATRRYVENKR-VLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLS 271

Query: 110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVI 154
           K +               R D V + L ++  RG    E++DV++
Sbjct: 272 KAEFV-------------RDD-VFKLLRTYRDRG----EKFDVIV 298

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 26/148 (17%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS 96
            G G    T   L  + +L +   +  D G G+G   +           G+D     I  
Sbjct: 26  QGPGSPEVTLKALSFIDNLTEKSLI-ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDI 84

Query: 97  AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIAN 156
            ++NA  +           + +R         + G ++ L           EE D++ + 
Sbjct: 85  FNRNARQSG----------LQNRVTG------IVGSMDDLP-------FRNEELDLIWSE 121

Query: 157 --ILLNPLPQLADHIVSYAKPGAVVGIS 182
             I      +  +    Y K G  + +S
Sbjct: 122 GAIYNIGFERGLNEWRKYLKKGGYLAVS 149

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 25/123 (20%)

Query: 63  LDYGTGSGILGIAAIKFGAAMFV-GVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
           +D G G G L    +K  +   + GVD+   V++ A              K  L  DR  
Sbjct: 34  IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERA--------------KDRLKIDR-- 77

Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-----PLPQLADHIVSYAKPG 176
              + E     +    S  +        YD      ++       L      +  + +P 
Sbjct: 78  ---LPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ 134

Query: 177 AVV 179
            V+
Sbjct: 135 TVI 137

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 61  LFLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119
             +D GTG+  +            F+  ++D      A +N   NN+    IK+  VP +
Sbjct: 68  RGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQK 126

Query: 120 TF 121
           T 
Sbjct: 127 TL 128

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 25/123 (20%)

Query: 63  LDYGTGSGILGIAAIKFGAAMFV-GVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
           +D G G G L    +K      + GVD+  + ++ A +                      
Sbjct: 34  IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDR------------------ 75

Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-----PLPQLADHIVSYAKPG 176
              +       ++ +             YD      ++       L      +  +A+P 
Sbjct: 76  -LRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK 134

Query: 177 AVV 179
            V+
Sbjct: 135 IVI 137

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK 109
            L+  ++ G+  LD  T +G   I A   GA   +G+D  P+ I++A +NA LN +  +
Sbjct: 210 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDR 268

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 17  EWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL----FLDYGTGSGIL 72
            +S             PG+         + L L  LQ  +    +     LD G G G L
Sbjct: 188 AFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGAL 247

Query: 73  GIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
            +   + GA + VGV+ D   + S  +    N +
Sbjct: 248 TLPLARMGAEV-VGVEDDLASVLSLQKGLEANAL 280

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 32/153 (20%)

Query: 40  GEHATTKLCLLLLQSLIKGGELFLDYGTGSG--ILGIAAIKFGAAMFVGVDIDPQVIKSA 97
                       LQ  ++ G +      G    +L +          VG+D DP+ +  A
Sbjct: 100 ATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGA 159

Query: 98  HQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANI 157
            + AA                          + G +      +   +   E YD++ +N 
Sbjct: 160 TRLAA-----------------------GHALAGQITLHRQ-DAWKLDTREGYDLLTSNG 195

Query: 158 LLNPLP------QLADHIVSYAKPGAVVGISGI 184
           L    P      +L        KPG  +  S +
Sbjct: 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGILGI--AAIKFGAAMFVGVDIDPQVIKSAHQ 99
                  LL L +  + G   LD  TGSG + +  A+     +     D+D + +  A +
Sbjct: 188 TPVLAQALLRL-ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246

Query: 100 NA 101
            A
Sbjct: 247 AA 248

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 25/104 (24%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK 110
           L +++++ GE  LD  +  G   + A + GA   + VD D + +    Q A    +    
Sbjct: 207 LFEAMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRVDI 265

Query: 111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVI 154
                              +  +  L   E         +  V+
Sbjct: 266 R----------------HGE-ALPTLRGLE-------GPFHHVL 285

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 50  LLLQSLIKG-GELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNI 106
           LLL +L        LD G G+G+L +A  +          D+    ++++    A N +
Sbjct: 187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV 245

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 25/107 (23%)

Query: 51  LLQSLIKGGELFLD---YGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG 107
           L+     G    L+   Y T +    +AA   GA     VD+  +    +  +   N++ 
Sbjct: 206 LINGSAAGKT-VLNLFSY-TAA--FSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD 261

Query: 108 PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVI 154
               +L               V  V +Y              YD++I
Sbjct: 262 MANHQL--------------VVMDVFDYFK----YARRHHLTYDIII 290

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 33/173 (19%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP 108
           +L    ++K G+  LD G G+G   +     G  +    D +   I +  +  ++ N+  
Sbjct: 24  VLEAVKVVKPGKT-LDLGCGNGRNSLYLAANGYDV-DAWDKNAMSIANVERIKSIENL-- 79

Query: 109 KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-----PLP 163
                             + +   V  L++          +YD +++ ++L       +P
Sbjct: 80  ------------------DNLHTRVVDLNNLTF-----DRQYDFILSTVVLMFLEAKTIP 116

Query: 164 QLADHIVSYAKPGAVVGISGILS-EQLPRIINRYSEFLEDILVSEKDDWRCVS 215
            L  ++    KPG    I   +     P  +     F E  L    + W  V 
Sbjct: 117 GLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVK 169

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 38  GTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSA 97
           G G    T+  +  +  L    ++  D G G+G   +    +      G+D+ P  I+  
Sbjct: 27  GPGSPEATRKAVSFINELTDDAKI-ADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIF 85

Query: 98  HQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIAN- 156
           ++NA   N            DR         + G ++ L         + EE D++ +  
Sbjct: 86  NENAVKAN----------CADRVKG------ITGSMDNLP-------FQNEELDLIWSEG 122

Query: 157 -ILLNPLPQLADHIVSYAKPGAVVGIS 182
            I      +  +    Y K G  + +S
Sbjct: 123 AIYNIGFERGMNEWSKYLKKGGFIAVS 149

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
               ++ +D   G G   I     G  + + +DIDP  I  A  NA +  I
Sbjct: 76  SFKCDVVVDAFCGVGGNTIQFALTGMRV-IAIDIDPVKIALARNNAEVYGI 125

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 14  IVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILG 73
           IVPE           +  NP +           L L  L   +       D  + SGI  
Sbjct: 12  IVPEIPKTVSSDMP-VFYNPRMRV---NRDLAVLGLEYLCKKLGRPVKVADPLSASGIRA 67

Query: 74  IAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH 114
           I  +            DI  + I+   +N  LNNI   + ++H
Sbjct: 68  IRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIH 110

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 62  FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
             D GTGSG +G++  KF  A+    D+  + ++ A +NA  + +
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV 171

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 5/114 (4%)

Query: 21  PPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG 80
           P     +++ +   L+    E ++  +        I+ G   +D   G GI  IA +   
Sbjct: 59  PQWAGISSLYIPSRLSL---EQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKA 115

Query: 81  AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN-ERVDGVV 133
           +   + ++ + +   +A  N  L     K + +     + +   +     D + 
Sbjct: 116 SQG-IYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 25/124 (20%)

Query: 63  LDYGTGSGILGIAAIKFGAAM--FVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
           +D+G GSG L  + + +  ++   +GVDI P+ +  A +           + + L  +  
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK----------MLHVKLNKEAC 775

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIA-----NILLNPLPQLADHIVSYAKP 175
                    DG +           S   + D+        ++  +   +  + ++S   P
Sbjct: 776 -NVKSATLYDGSILEFD-------SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP 827

Query: 176 GAVV 179
             ++
Sbjct: 828 KLLI 831

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 27/125 (21%)

Query: 56  IKGGELFLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH 114
            + GE  +  G G   L    +          V+I+P + + + +      +    +   
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITG 179

Query: 115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAK 174
                                          +  E+DV++   L  P  ++  +I  Y  
Sbjct: 180 DETVI--------------------------DGLEFDVLMVAALAEPKRRVFRNIHRYVD 213

Query: 175 PGAVV 179
               +
Sbjct: 214 TETRI 218

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 56  IKGGELFLDYGTGSGILG-IAAIKFGAAMFV-GVDIDPQVIKSAHQNAALNNIGPKKIKL 113
              G   LD G G+G    +A+   G    V GVD+    ++ A +    +    K    
Sbjct: 81  SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYH--AEKFFGS 138

Query: 114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP---QLADHIV 170
               +  F       + G +E L++ E  G+ +    D+VI+N + N       L   I 
Sbjct: 139 PSRSNVRF-------LKGFIENLATAEPEGVPD-SSVDIVISNCVCNLSTNKLALFKEIH 190

Query: 171 SYAKPGAVVGISGILS 186
              + G  +  S + +
Sbjct: 191 RVLRDGGELYFSDVYA 206

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 45  TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN 104
           T   +  L+      ++ LD GT +G++     K      V  D++ + ++S      + 
Sbjct: 10  TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRK--RNTVVSTDLNIRALESHRGGNLVR 67

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA 102
           LL   +K     LD   G G        +G  + VGVDI   +I+ A + A 
Sbjct: 31  LLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEV-VGVDISEDMIRKAREYAK 81

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 41  EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQN 100
           +  +    +   +  +K     LD G G G       + G    VGVDI   +I+   + 
Sbjct: 36  DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKA-VGVDISEVMIQKGKER 94

Query: 101 AALNNI 106
               ++
Sbjct: 95  GEGPDL 100

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 63  LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
           LD G G G   I A + GA   +G+D+  +++  A +      +
Sbjct: 49  LDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVV 92

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 28/173 (16%)

Query: 56  IKGGELFLDYGTGSG-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA-----LNNIGPK 109
           +K G+ F+D G+G G  +  AA++ G A+  G +I                      G +
Sbjct: 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 299

Query: 110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHI 169
              +     ++F    N RV  ++               + DV++ N  L     L   +
Sbjct: 300 LNNVEFSLKKSFV--DNNRVAELI--------------PQCDVILVNNFLFD-EDLNKKV 342

Query: 170 VSYA---KPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWR--CVSGT 217
                  K G  +     L     +I     E + + L  ++ D +   VS T
Sbjct: 343 EKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWT 395

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 63  LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
           LD G GSGIL   A + GA     V+    + + A      NN+     ++ ++P +   
Sbjct: 55  LDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTD---RIVVIPGKVEE 110

Query: 123 ASMNERVDGVV 133
            S+ E+VD ++
Sbjct: 111 VSLPEQVDIII 121

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA 102
           LL+  ++  +  L  G G+  L       G      VD    V+ +     A
Sbjct: 35  LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA 86

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 50  LLLQSLIKG-GELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIG 107
             +Q L +      +D G G+G++G+  +     A  V VD  P  + S+  N   N   
Sbjct: 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 272

Query: 108 PKKIKLHLVPDRTFTASMNERVDGVV 133
               +   + +   +     R + V+
Sbjct: 273 ALD-RCEFMINNALSGVEPFRFNAVL 297

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101
           H    +   LL+ + K  +  LD G  SG LG A  + G  +  G++  P+  + A +  
Sbjct: 16  HYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRV-SGIEAFPEAAEQAKEKL 74

Query: 102 ALNNIGPKKIKLHLVPDRTF 121
               +G  +       +  F
Sbjct: 75  DHVVLGDIETMDMPYEEEQF 94

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 59  GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI 111
           GE  LD  + +G   +     G    V VD   + ++ A +NA LN +G  ++
Sbjct: 210 GERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRV 261

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 63  LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
           LD G GSGIL   A + GA     V+    + + A      NN+     ++ ++P +   
Sbjct: 163 LDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTD---RIVVIPGKVEE 218

Query: 123 ASMNERVDGVVEYLSSHEIRG---ISETEEYDVVIANILLNP 161
            S+ E+VD ++      E  G    +E      + A   L P
Sbjct: 219 VSLPEQVDIII-----SEPMGYMLFNERMLESYLHAKKYLKP 255

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
            L   +     +  LD G G  +  ++          G++I    +K A   +  NN 
Sbjct: 14  FLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF 71

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 69  SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNER 128
           +G+  + A   GA +   VD   + I  A +N  L  +    I+  +  D          
Sbjct: 164 TGVASLVAAAAGAEV-THVDASKKAIGWAKENQVLAGLEQAPIRW-ICED---------- 211

Query: 129 VDGVVEYLSSHEIRGISETEEYDVVI 154
               ++++   E RG      YD+++
Sbjct: 212 ---AMKFIQREERRG----STYDIIL 230

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 44  TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103
              +    L  ++    + +D   G+G    A +   +      D+  Q +    Q  + 
Sbjct: 8   PIHMSHDFLAEVLDDESIVVDATMGNGND-TAFLAGLSKKVYAFDVQEQALGKTSQRLSD 66

Query: 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVV 133
              G +  +L L         + E +   +
Sbjct: 67  L--GIENTELILDGHENLDHYVREPIRAAI 94

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 13/73 (17%)

Query: 31  LNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGI-AAIKFGAAMFVGVDI 89
           L   +A             ++  + + GG   LD   GSG + I  A++  +   +G++ 
Sbjct: 202 LKASIANA-----------MIELAELDGGS-VLDPMCGSGTILIELALRRYSGEIIGIEK 249

Query: 90  DPQVIKSAHQNAA 102
             + +  A  NA 
Sbjct: 250 YRKHLIGAEMNAL 262

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 26/114 (22%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK 110
           L+ ++   G   LD G G G +G    K G  + +G D+DP +I  A Q+          
Sbjct: 39  LIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDV-LGTDLDPILIDYAKQDF--------- 88

Query: 111 IKLHLVPDRTFT-ASM------NERVDGVVEYLSSHEIRGISETEEYDVVIANI 157
                 P+  +    +          D +V   +     G    +  +  +ANI
Sbjct: 89  ------PEARWVVGDLSVDQISETDFDLIVSAGNVM---GFLAEDGREPALANI 133

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-------- 107
           +   ++ +D G GSG + +   K    ++  +D     I+   QN A  NI         
Sbjct: 33  LNKDDVVVDVGCGSGGMTVEIAKRCKFVY-AIDYLDGAIEVTKQNLAKFNIKNCQIIKGR 91

Query: 108 -PKKIKLHLVPDRTF 121
               +   L  ++ F
Sbjct: 92  AEDVLD-KLEFNKAF 105

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 63  LDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106
           LD GTG+G + +A A +      + VD  P  +  A +NA    I
Sbjct: 114 LDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI 158

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 56  IKGGELFLDYGTGSG-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA 102
           +   +LF+D G+G G ++   A         GV+      K A     
Sbjct: 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDR 218

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL 115
           I  G   +D G+G G L IA  K        +D    + + A +N A  N+   +I++  
Sbjct: 42  ITAGTC-IDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN-DRIQIVQ 99

Query: 116 -------VPDRTF 121
                  + D   
Sbjct: 100 GDVHNIPIEDNYA 112

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGIL-GIAAIKFGAA-MFVGVDIDPQVIKSAHQ 99
             +       ++  +K G+  +D   G+G      A   G      G DI  + I +  +
Sbjct: 6   KNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK 65

Query: 100 NAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV---EYLSSHEIRGISETEEYDVVIAN 156
                N+   ++ L     +     ++  V  V+    YL S +    +  E     ++ 
Sbjct: 66  KLTDLNL-IDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSK 124

Query: 157 IL--LNP 161
            +  L  
Sbjct: 125 AMELLVT 131

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 63  LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
           LD GTGSGIL I + + GA     V+    +   A      NN+      + ++      
Sbjct: 68  LDVGTGSGILAIWSAQAGARKVYAVEATK-MADHARALVKANNLDH---IVEVIEGSVED 123

Query: 123 ASMNERVDGVV 133
            S+ E+VD ++
Sbjct: 124 ISLPEKVDVII 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.95
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.95
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.78
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.74
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.73
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.73
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.71
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.7
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.7
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.7
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.7
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.69
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.69
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.68
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.68
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.67
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.67
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.66
3ocj_A	305	Putative exported protein; structural genomics, PS	99.66
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.66
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.66
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.66
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.65
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.65
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.65
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.65
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.65
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.65
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.65
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.65
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.65
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.64
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.64
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.64
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.64
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.64
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.64
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.64
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.64
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.63
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.63
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.63
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.63
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.63
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.62
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.62
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.62
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.62
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.62
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.61
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.61
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.61
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.61
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.61
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.61
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.61
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.61
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.61
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.6
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.6
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.6
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.6
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.6
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.6
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.6
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.6
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.6
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.59
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.59
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.59
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.59
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.59
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.59
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.59
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.59
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.59
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.59
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.59
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.59
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.58
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.58
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.58
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.58
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.58
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.58
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.57
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.57
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.57
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.56
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.56
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.56
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.56
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.56
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.56
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.56
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.56
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.56
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.56
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.56
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.56
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.56
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.55
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.55
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.55
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.55
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.55
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.55
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.55
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.55
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.55
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.55
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.54
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.54
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.54
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.54
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.54
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.53
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.53
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.53
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.53
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.53
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.53
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.53
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.53
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.53
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.52
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.52
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.52
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.52
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.52
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.51
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.51
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.51
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.51
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.51
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.51
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.51
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.51
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.51
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.51
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.5
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.5
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.5
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.5
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.5
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.5
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.5
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.5
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.5
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.5
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.49
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.49
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.49
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.49
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.49
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.49
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.49
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.49
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.48
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.48
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.48
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.48
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.48
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.48
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.48
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.48
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.48
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.48
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.47
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.47
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.47
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.47
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.47
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.47
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.47
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.47
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.47
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.47
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.47
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.46
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.46
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.46
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.46
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.46
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.46
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.45
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.45
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.45
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.45
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.45
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.44
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.44
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.44
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.44
2o07_A	304	Spermidine synthase; structural genomics, structur	99.44
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.43
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.43
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.43
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.43
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.43
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.43
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.42
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.42
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.42
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.42
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.41
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.41
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.41
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.41
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.41
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.41
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.41
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.4
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.4
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.4
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.4
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.4
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.39
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.38
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.38
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.38
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.37
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.37
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.37
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.37
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.36
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.36
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.35
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.34
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.34
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.33
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.33
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.32
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.31
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.31
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.3
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.3
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.29
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.29
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.28
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.28
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.27
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.27
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.26
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.26
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.25
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.23
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.23
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.22
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.21
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.21
3lkd_A	542	Type I restriction-modification system methyltrans	99.18
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.17
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.17
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.17
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.15
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.15
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.11
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.09
3khk_A	544	Type I restriction-modification system methylation	99.08
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.06
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.03
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.03
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.02
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.01
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.01
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.01
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.0
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.0
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.95
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.95
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.93
3ufb_A	530	Type I restriction-modification system methyltran	98.93
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.93
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.9
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.88
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.83
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.78
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.75
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.73
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.73
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.71
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.67
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.57
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.43
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.32
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.29
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.28
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.27
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.25
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.23
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.17
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.13
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.07
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.06
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.06
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.02
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.94
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.77
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.6
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.51
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.39
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.24
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.15
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.05
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.03
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.83
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.76
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.52
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.43
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.23
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.23
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.18
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.13
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.1
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.98
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.93
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.93
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.92
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.9
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.86
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.82
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.79
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.78
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.77
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.76
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.75
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.72
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.57
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.55
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.53
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.52
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.52
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.43
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.42
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.39
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.3
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.22
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.22
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.18
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.14
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.11
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.08
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.03
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.85
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.76
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.74
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.71
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.69
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.65
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.61
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.49
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.42
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.41
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.31
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.31
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.27
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.26
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.19
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.99
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.98
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	93.96
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.89
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.75
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	93.68
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.66
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	93.56
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.52
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.47
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.41
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	93.38
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	93.36
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.13
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	92.87
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.85
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.84
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.82
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.81
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.67
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.58
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.17
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.15
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	92.08
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.9
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	91.89
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.85
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.81
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.78
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	91.7
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.67
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.42
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.4
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.17
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.85
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.82
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	90.78
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	90.68
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	90.59
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	90.5
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	90.26
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.25
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.95
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.81
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.74
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	89.67
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.58
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	89.52
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	89.4
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	89.33
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	89.19
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.97
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.92
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	88.92
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.65
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	88.37
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	88.18
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.09
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.04
1id1_A	153	Putative potassium channel protein; RCK domain, E.	87.92
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	87.89
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.74
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	87.45
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	87.39
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	87.36
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	87.34
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	87.25
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	86.86
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	86.84
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	86.57
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	86.21
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	86.04
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.75
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	85.69
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	85.68
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	85.67
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	85.64
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	85.54
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	85.44
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	85.42
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	85.34
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	85.31
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	85.3
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	85.03
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	85.0
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	84.95
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	84.9
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.8
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	84.73
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	84.54
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	84.42
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	84.1
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	83.98
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	83.78
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	83.72
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	83.69
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	83.66
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.58
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	83.54
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	83.51
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	83.12
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.07
4gua_A	670	Non-structural polyprotein; viral precursor polypr	82.93
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	82.82
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	82.67
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	82.51
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	82.42
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	82.37
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	82.05
3imf_A	257	Short chain dehydrogenase; structural genomics, in	81.33
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	81.31
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	81.28
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	81.22
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	81.17
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	80.92
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	80.85
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	80.76
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	80.75
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	80.5
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	80.38
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	80.31
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	80.1
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	80.05

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.95  E-value=8.7e-27  Score=185.94  Aligned_cols=194  Identities=34%  Similarity=0.443  Sum_probs=168.0

Q ss_pred             CCccceEeccceeeeecCCCCC--CCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHH
Q 047371            1 ESFHPVEVTKGLWIVPEWSTPP--DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK   78 (222)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~   78 (222)
                      ++|+|+.+....+++|.|.+..  ..+...+.++|+..|+++.++....+.+.+....+++.+|||+|||+|.++..+++
T Consensus         1 ~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~   80 (205)
T 3grz_A            1 KYYHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHK   80 (205)
T ss_dssp             CCCCCEEEETTEEEEETTCCCCCSSTTCEEEEESCC-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHH
T ss_pred             CCCCcEEECCcEEEeccccccccCCCCceeEEecCCcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHH
Confidence            5899999999999999999864  36678899999999999999999999999988888899999999999999999998


Q ss_pred             hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccc
Q 047371           79 FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus        79 ~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                      .+..+++|+|+++.+++.|++++..+++.  ++.+...|....                        ..++||+|+++.+
T Consensus        81 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~------------------------~~~~fD~i~~~~~  134 (205)
T 3grz_A           81 LGAKSVLATDISDESMTAAEENAALNGIY--DIALQKTSLLAD------------------------VDGKFDLIVANIL  134 (205)
T ss_dssp             TTCSEEEEEESCHHHHHHHHHHHHHTTCC--CCEEEESSTTTT------------------------CCSCEEEEEEESC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEecccccc------------------------CCCCceEEEECCc
Confidence            87779999999999999999999888875  488888876543                        4578999999999


Q ss_pred             cccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceEeecccCC
Q 047371          159 LNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTKFS  220 (222)
Q Consensus       159 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~~  220 (222)
                      ++++..+++++.++|||||.++++++...+..++.+.+.+. |........+.|.++..++..
T Consensus       135 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~~  197 (205)
T 3grz_A          135 AEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISRKH  197 (205)
T ss_dssp             HHHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEETTEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccCCEEEEEEeccc
Confidence            99889999999999999999999888888888898888875 888888899999999888754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.95  E-value=3e-27  Score=195.58  Aligned_cols=188  Identities=28%  Similarity=0.476  Sum_probs=161.3

Q ss_pred             CccceEeccceeeeecCCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCC
Q 047371            2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGA   81 (222)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~   81 (222)
                      +|+|+.++. .++.|+|..+ ......+.++|+..|++|.|++++++.+.+...++++.+|||+|||+|.+++.+++.+.
T Consensus        66 ~~~p~~~~~-~~i~~~w~~~-~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~  143 (254)
T 2nxc_A           66 DLKPALAPP-FVVLAPWHTW-EGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG  143 (254)
T ss_dssp             HCCCEEETT-EEEECTTCCC-CSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             hCCCEEEec-EEEeCCCCCC-CCCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC
Confidence            689999999 9999999984 66788999999999999999999999999988888899999999999999999988875


Q ss_pred             CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371           82 AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus        82 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                       +++|+|+++.+++.|++++..+++.   +.+...+....          +             +.++||+|++|.+.+.
T Consensus       144 -~v~gvDi~~~~v~~a~~n~~~~~~~---v~~~~~d~~~~----------~-------------~~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          144 -KALGVDIDPMVLPQAEANAKRNGVR---PRFLEGSLEAA----------L-------------PFGPFDLLVANLYAEL  196 (254)
T ss_dssp             -EEEEEESCGGGHHHHHHHHHHTTCC---CEEEESCHHHH----------G-------------GGCCEEEEEEECCHHH
T ss_pred             -eEEEEECCHHHHHHHHHHHHHcCCc---EEEEECChhhc----------C-------------cCCCCCEEEECCcHHH
Confidence             9999999999999999999887753   66666554321          0             3567999999998888


Q ss_pred             HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceEeeccc
Q 047371          162 LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTK  218 (222)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k  218 (222)
                      +..+++.+.++|||||+++++++...+..++.+.+... |...+....++|.++..+|
T Consensus       197 ~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~l~~~k  254 (254)
T 2nxc_A          197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccCCeEEEEEEC
Confidence            88999999999999999999988888999999999876 8888899999999998875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.78  E-value=6.4e-18  Score=140.19  Aligned_cols=118  Identities=17%  Similarity=0.249  Sum_probs=97.4

Q ss_pred             chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc
Q 047371           43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR  119 (222)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~  119 (222)
                      ....++..++..+++++.+|||+|||+|..+..+++.   +..+|+|+|+|+.+++.|++++...+.. .++++...|..
T Consensus        55 ~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~-~~v~~~~~D~~  133 (261)
T 4gek_A           55 NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIR  133 (261)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC-ceEEEeecccc
Confidence            3445556666677899999999999999999999875   3458999999999999999998877765 47899988876


Q ss_pred             ccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCC
Q 047371          120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                      .+                        +.++||+|+++..++++     ..+++++++.|||||.+++++..
T Consensus       134 ~~------------------------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          134 DI------------------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             TC------------------------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cc------------------------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            65                        55679999999888763     34799999999999999997543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.74  E-value=1.2e-16  Score=139.16  Aligned_cols=163  Identities=18%  Similarity=0.212  Sum_probs=125.6

Q ss_pred             eEEeCCCcccccCCcchhHHHHHHHHhhhc----CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           28 NIILNPGLAFGTGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        28 ~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~----~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      .+...|+..+..+..+.+..+.+.+.....    ++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++++..
T Consensus       199 ~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~  277 (381)
T 3dmg_A          199 TFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEA  277 (381)
T ss_dssp             EEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHH
T ss_pred             EEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHH
Confidence            566677777666677788888888876543    68899999999999999999885 5999999999999999999988


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccC
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKP  175 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~Lkp  175 (222)
                      +++   ++++...|......                      +.++||+|++|+++++        ...+++++.++|||
T Consensus       278 ~~~---~v~~~~~D~~~~~~----------------------~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lkp  332 (381)
T 3dmg_A          278 NAL---KAQALHSDVDEALT----------------------EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP  332 (381)
T ss_dssp             TTC---CCEEEECSTTTTSC----------------------TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE
T ss_pred             cCC---CeEEEEcchhhccc----------------------cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCc
Confidence            875   36777777755421                      3478999999999876        34689999999999


Q ss_pred             CeEEEEecCCCCcHHHHHHHHHhhhhcceecccCCceEeecccC
Q 047371          176 GAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF  219 (222)
Q Consensus       176 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~  219 (222)
                      ||.+++++......   ...+...|...+.....++..+...+.
T Consensus       333 GG~l~iv~n~~l~~---~~~l~~~f~~v~~l~~~gF~Vl~a~~~  373 (381)
T 3dmg_A          333 GGVFFLVSNPFLKY---EPLLEEKFGAFQTLKVAEYKVLFAEKR  373 (381)
T ss_dssp             EEEEEEEECTTSCH---HHHHHHHHSCCEEEEESSSEEEEEECC
T ss_pred             CcEEEEEEcCCCCh---HHHHHHhhccEEEEeCCCEEEEEEEEe
Confidence            99999975544433   333344444454446778887777664

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.73  E-value=1.4e-16  Score=124.43  Aligned_cols=138  Identities=19%  Similarity=0.250  Sum_probs=111.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|++++...++...++.+...+.....              
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------------  115 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV--------------  115 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--------------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc--------------
Confidence            47889999999999999998888 579999999999999999999887765213888887764431              


Q ss_pred             ccccccCCCCCCCeeEEEecccccc----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhccee-cccCCc
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILV-SEKDDW  211 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w  211 (222)
                               +.++||+|++++++++    ...+++.+.++|+|||.+++.........++.+.+.+.|..++. .....|
T Consensus       116 ---------~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  186 (194)
T 1dus_A          116 ---------KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGY  186 (194)
T ss_dssp             ---------TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTE
T ss_pred             ---------ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCCcE
Confidence                     4568999999998775    45689999999999999999877777777788888887655554 456778


Q ss_pred             eEeeccc
Q 047371          212 RCVSGTK  218 (222)
Q Consensus       212 ~~~~~~k  218 (222)
                      ..+..+|
T Consensus       187 ~~~~~~k  193 (194)
T 1dus_A          187 RVLKSKK  193 (194)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEee
Confidence            8877665

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.73  E-value=9.9e-17  Score=126.05  Aligned_cols=131  Identities=22%  Similarity=0.242  Sum_probs=98.3

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhh-----cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI-----KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~-----~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      ..+.+++ ..    .++++..+.+.+...+     .++.+|||+|||+|.++..++..+..+|+|+|+++.+++.|++++
T Consensus        13 ~~l~~~~-~~----~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~   87 (189)
T 3p9n_A           13 RRIAVPP-RG----TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNI   87 (189)
T ss_dssp             CEEECCS-CC----C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred             cEecCCC-CC----CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH
Confidence            4455555 22    3444444444433332     478899999999999999888877789999999999999999999


Q ss_pred             HhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----HHHHHHHHHH--cccC
Q 047371          102 ALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----LPQLADHIVS--YAKP  175 (222)
Q Consensus       102 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~--~Lkp  175 (222)
                      ..+++.  ++++...|...+..       ..             +.++||+|++++++++    ...+++.+.+  +|||
T Consensus        88 ~~~~~~--~v~~~~~d~~~~~~-------~~-------------~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~p  145 (189)
T 3p9n_A           88 EALGLS--GATLRRGAVAAVVA-------AG-------------TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTRE  145 (189)
T ss_dssp             HHHTCS--CEEEEESCHHHHHH-------HC-------------CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCT
T ss_pred             HHcCCC--ceEEEEccHHHHHh-------hc-------------cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCC
Confidence            888873  78898888755421       00             3678999999999886    4568899998  9999


Q ss_pred             CeEEEEecC
Q 047371          176 GAVVGISGI  184 (222)
Q Consensus       176 gG~l~~~~~  184 (222)
                      ||.+++...
T Consensus       146 gG~l~~~~~  154 (189)
T 3p9n_A          146 GTVAVVERA  154 (189)
T ss_dssp             TCEEEEEEE
T ss_pred             CeEEEEEec
Confidence            999999643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.71  E-value=5.1e-16  Score=123.26  Aligned_cols=120  Identities=14%  Similarity=0.151  Sum_probs=101.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++.  ++++...+......           
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----------  104 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR--NVTLVEAFAPEGLD-----------  104 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT--TEEEEECCTTTTCT-----------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeCChhhhhh-----------
Confidence            567899999999999999999887 3579999999999999999999888874  78888887643311           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                 ..++||+|+++.+.+....+++++.+.|||||.+++.+.......++.+.+.+.
T Consensus       105 -----------~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  158 (204)
T 3e05_A          105 -----------DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDH  158 (204)
T ss_dssp             -----------TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHT
T ss_pred             -----------cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHC
Confidence                       346799999999888888999999999999999999877767777777777664

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.70  E-value=3.5e-16  Score=126.26  Aligned_cols=124  Identities=23%  Similarity=0.344  Sum_probs=97.5

Q ss_pred             HHhhhcCCCcEEEEccC-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           52 LQSLIKGGELFLDYGTG-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        52 l~~~~~~~~~vLD~G~G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      +...++++.+|||+||| +|.++..+++....+|+|+|+++.+++.|++++..+++   ++++...|...+.        
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~--------  117 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS---NVRLVKSNGGIIK--------  117 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEEECSSCSST--------
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEeCCchhhh--------
Confidence            34556789999999999 99999999887347999999999999999999988876   6778887753321        


Q ss_pred             cchhccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEEecC-CCC
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGISGI-LSE  187 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~-~~~  187 (222)
                      ++             +.++||+|++|+|+.+                      +..+++.+.++|||||.+++... ...
T Consensus       118 ~~-------------~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  184 (230)
T 3evz_A          118 GV-------------VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK  184 (230)
T ss_dssp             TT-------------CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH
T ss_pred             hc-------------ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh
Confidence            11             4578999999998754                      36689999999999999998533 234


Q ss_pred             cHHHHHHHHHhh
Q 047371          188 QLPRIINRYSEF  199 (222)
Q Consensus       188 ~~~~~~~~~~~~  199 (222)
                      ...++.+.+.+.
T Consensus       185 ~~~~~~~~l~~~  196 (230)
T 3evz_A          185 LLNVIKERGIKL  196 (230)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            566777777664

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.70  E-value=8.2e-16  Score=122.73  Aligned_cols=118  Identities=14%  Similarity=0.154  Sum_probs=99.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++. +++.+...|......            
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~~------------  118 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS-PRMRAVQGTAPAALA------------  118 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCTTGGGT------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEeCchhhhcc------------
Confidence            467889999999999999999988 579999999999999999999888875 378888888755211            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                ...+||+|+++.... .. +++.+.+.|||||.+++.....++..++.+.+.+.
T Consensus       119 ----------~~~~~D~v~~~~~~~-~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  170 (204)
T 3njr_A          119 ----------DLPLPEAVFIGGGGS-QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH  170 (204)
T ss_dssp             ----------TSCCCSEEEECSCCC-HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred             ----------cCCCCCEEEECCccc-HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence                      345799999988664 45 99999999999999999887777788887777765

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.70  E-value=4.3e-16  Score=124.00  Aligned_cols=101  Identities=21%  Similarity=0.214  Sum_probs=87.3

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      .+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...++. .++.+...+...+..                
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~----------------  107 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN-DRIQIVQGDVHNIPI----------------  107 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECBTTBCSS----------------
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc-CceEEEEcCHHHCCC----------------
Confidence            399999999999999998875579999999999999999999888775 478898888766532                


Q ss_pred             cccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEec
Q 047371          140 EIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~  183 (222)
                            +.++||+|+++.++++.   ..+++++.++|||||.+++.+
T Consensus       108 ------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          108 ------EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             ------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence                  56789999999888764   678999999999999999864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.70  E-value=3.2e-16  Score=122.37  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      .......++...++++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++.  ++++...+...+. 
T Consensus         8 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~~~~~l~-   83 (185)
T 3mti_A            8 PIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIE--NTELILDGHENLD-   83 (185)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCC--CEEEEESCGGGGG-
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCcHHHHH-
Confidence            455666777777888999999999999999999988 579999999999999999999888874  7888775544321 


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecCC
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                             .            + ..++||+|++++++.+            ....++++.+.|||||.+++..+.
T Consensus        84 -------~------------~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           84 -------H------------Y-VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             -------G------------T-CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             -------h------------h-ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence                   0            1 4668999999854321            235689999999999999986543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.69  E-value=2.3e-15  Score=125.24  Aligned_cols=150  Identities=14%  Similarity=0.146  Sum_probs=110.8

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhh-cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~-~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ..+.++|+...   ..+.+..+.+.+...+ .++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++..+
T Consensus        80 ~~~~~~~~~~i---pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~  156 (276)
T 2b3t_A           80 LPLFVSPATLI---PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL  156 (276)
T ss_dssp             EEEECCTTSCC---CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEeCCCCcc---cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            34556665433   2333444444444443 56789999999999999998864 5679999999999999999999888


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------  161 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------  161 (222)
                      ++.  ++.+...|.....                       +.++||+|++|+|+..                       
T Consensus       157 ~~~--~v~~~~~d~~~~~-----------------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~  211 (276)
T 2b3t_A          157 AIK--NIHILQSDWFSAL-----------------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAAD  211 (276)
T ss_dssp             TCC--SEEEECCSTTGGG-----------------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHH
T ss_pred             CCC--ceEEEEcchhhhc-----------------------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCC
Confidence            875  6888887764321                       3568999999988742                       


Q ss_pred             -----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhccee
Q 047371          162 -----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILV  205 (222)
Q Consensus       162 -----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (222)
                           +..+++.+.++|||||.+++. ....+..++.+.+... |..++.
T Consensus       212 ~g~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~l~~~Gf~~v~~  260 (276)
T 2b3t_A          212 SGMADIVHIIEQSRNALVSGGFLLLE-HGWQQGEAVRQAFILAGYHDVET  260 (276)
T ss_dssp             HHTHHHHHHHHHHGGGEEEEEEEEEE-CCSSCHHHHHHHHHHTTCTTCCE
T ss_pred             cHHHHHHHHHHHHHHhcCCCCEEEEE-ECchHHHHHHHHHHHCCCcEEEE
Confidence                 356789999999999999986 4556677777777664 655543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.69  E-value=1.1e-15  Score=128.14  Aligned_cols=144  Identities=19%  Similarity=0.299  Sum_probs=106.6

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ..+.++|+...   ..+.+..+.+.+...+  .++.+|||+|||+|.+++.+++.+..+++|+|+|+.+++.|++++..+
T Consensus        93 ~~~~v~~~~li---pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~  169 (284)
T 1nv8_A           93 LSFLVEEGVFV---PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH  169 (284)
T ss_dssp             EEEECCTTSCC---CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEeCCCcee---cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            55667776543   2333333433333332  367899999999999999988775679999999999999999999988


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCe---eEEEeccccccHH------------------
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEY---DVVIANILLNPLP------------------  163 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---D~v~~~~~~~~~~------------------  163 (222)
                      ++. .++.+...|....                        ..++|   |+|++|+|+....                  
T Consensus       170 ~l~-~~v~~~~~D~~~~------------------------~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~  224 (284)
T 1nv8_A          170 GVS-DRFFVRKGEFLEP------------------------FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGG  224 (284)
T ss_dssp             TCT-TSEEEEESSTTGG------------------------GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCT
T ss_pred             CCC-CceEEEECcchhh------------------------cccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCC
Confidence            876 3588988877542                        11357   9999999875321                  


Q ss_pred             ----HHHHHHH-HcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          164 ----QLADHIV-SYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       164 ----~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                          .+++.+. +.++|||.+++. +...+..++.+.+...
T Consensus       225 ~dgl~~~~~i~~~~l~pgG~l~~e-~~~~q~~~v~~~~~~~  264 (284)
T 1nv8_A          225 EDGLDFYREFFGRYDTSGKIVLME-IGEDQVEELKKIVSDT  264 (284)
T ss_dssp             TTSCHHHHHHHHHCCCTTCEEEEE-CCTTCHHHHTTTSTTC
T ss_pred             CcHHHHHHHHHHhcCCCCCEEEEE-ECchHHHHHHHHHHhC
Confidence                5789999 999999999985 5666666766665544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.68  E-value=8e-16  Score=128.51  Aligned_cols=146  Identities=18%  Similarity=0.246  Sum_probs=109.3

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ...+.+++...   +.++........+...++++.+|||+|||+|.+++.+++.+..+|+|+|+++.+++.|++++..++
T Consensus        96 g~~f~~d~~~~---~f~~~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~  172 (278)
T 2frn_A           96 GIKYKLDVAKI---MFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK  172 (278)
T ss_dssp             TEEEEEETTTS---CCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEccce---eEcCCcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            44555554432   123333334445555677899999999999999999998865589999999999999999999988


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                      +. .++++...|...+.                       ..++||+|+++++.. ...+++.+.++|||||.+++.+..
T Consensus       173 ~~-~~v~~~~~D~~~~~-----------------------~~~~fD~Vi~~~p~~-~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          173 VE-DRMSAYNMDNRDFP-----------------------GENIADRILMGYVVR-THEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             CT-TTEEEECSCTTTCC-----------------------CCSCEEEEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CC-ceEEEEECCHHHhc-----------------------ccCCccEEEECCchh-HHHHHHHHHHHCCCCeEEEEEEee
Confidence            86 35888888876552                       356899999998865 467889999999999999985443


Q ss_pred             ------CCcHHHHHHHHHhh
Q 047371          186 ------SEQLPRIINRYSEF  199 (222)
Q Consensus       186 ------~~~~~~~~~~~~~~  199 (222)
                            .....++.+.+...
T Consensus       228 ~~~~~~~~~~~~i~~~~~~~  247 (278)
T 2frn_A          228 PEKLMPREPFETFKRITKEY  247 (278)
T ss_dssp             EGGGTTTTTHHHHHHHHHHT
T ss_pred             ccccccccHHHHHHHHHHHc
Confidence                  34455666655553

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.68  E-value=8.9e-16  Score=131.46  Aligned_cols=156  Identities=15%  Similarity=0.104  Sum_probs=115.7

Q ss_pred             CcceeEEeCCCcccccCCcchhHHHHHHHHhhhc---CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHH
Q 047371           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQN  100 (222)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~---~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~  100 (222)
                      +....+.+++...+.+|.++.++....++...+.   ++.+|||+|||+|.+++.+++.+. +|+++|+|+.+++.|+++
T Consensus       116 e~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n  194 (332)
T 2igt_A          116 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKEN  194 (332)
T ss_dssp             ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred             ECCEEEEEecCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHH
Confidence            3456788888887778888877766666666553   578999999999999999998865 999999999999999999


Q ss_pred             HHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------HHHHHH
Q 047371          101 AALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------LPQLAD  167 (222)
Q Consensus       101 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------~~~~l~  167 (222)
                      +..+++...++.+...|...+..       ..           ....++||+|++|+|...             +..++.
T Consensus       195 ~~~~gl~~~~v~~i~~D~~~~l~-------~~-----------~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~  256 (332)
T 2igt_A          195 QVLAGLEQAPIRWICEDAMKFIQ-------RE-----------ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD  256 (332)
T ss_dssp             HHHHTCTTSCEEEECSCHHHHHH-------HH-----------HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred             HHHcCCCccceEEEECcHHHHHH-------HH-----------HhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHH
Confidence            99888763348888877654311       00           001467999999998422             457899


Q ss_pred             HHHHcccCCeEEEEecCC--CCcHHHHHHHHHh
Q 047371          168 HIVSYAKPGAVVGISGIL--SEQLPRIINRYSE  198 (222)
Q Consensus       168 ~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~  198 (222)
                      .+.++|||||.+++.+..  ......+.+.+.+
T Consensus       257 ~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~  289 (332)
T 2igt_A          257 ICREILSPKALGLVLTAYSIRASFYSMHELMRE  289 (332)
T ss_dssp             HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHH
Confidence            999999999997774332  3344555555553

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.67  E-value=1e-15  Score=126.30  Aligned_cols=120  Identities=21%  Similarity=0.231  Sum_probs=97.9

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|++++..+++. .++.+...|...+..       .      
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~~v~~~~~D~~~~~~-------~------  114 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE-DQIEIIEYDLKKITD-------L------  114 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT-TTEEEECSCGGGGGG-------T------
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc-ccEEEEECcHHHhhh-------h------
Confidence            68899999999999999999876569999999999999999999988886 478898888765421       0      


Q ss_pred             cccccCCCCCCCeeEEEeccccccH-----------------------HHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNPL-----------------------PQLADHIVSYAKPGAVVGISGILSEQLPRIIN  194 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----------------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (222)
                             .+.++||+|++|+|+...                       ..+++.+.++|||||.+++. .......++..
T Consensus       115 -------~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~  186 (259)
T 3lpm_A          115 -------IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV-HRPERLLDIID  186 (259)
T ss_dssp             -------SCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE-ECTTTHHHHHH
T ss_pred             -------hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE-EcHHHHHHHHH
Confidence                   146789999999997432                       45899999999999999995 45667777777


Q ss_pred             HHHhh
Q 047371          195 RYSEF  199 (222)
Q Consensus       195 ~~~~~  199 (222)
                      .+...
T Consensus       187 ~l~~~  191 (259)
T 3lpm_A          187 IMRKY  191 (259)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            77764

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.67  E-value=1.7e-15  Score=121.12  Aligned_cols=140  Identities=15%  Similarity=0.124  Sum_probs=110.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|++++...++.  ++.+...+...+..          
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~----------  102 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK--NVEVLKSEENKIPL----------  102 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEECBTTBCSS----------
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEecccccCCC----------
Confidence            457889999999999999988875  3569999999999999999999888775  78888888765432          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCC------------CCcHHHHHHHHHh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGIL------------SEQLPRIINRYSE  198 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~------------~~~~~~~~~~~~~  198 (222)
                                  +.++||+|+++..+++.   ..+++++.++|||||.+++.++.            .....++.+.+++
T Consensus       103 ------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          103 ------------PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             ------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred             ------------CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence                        56789999998888764   67899999999999999996432            2245777777776


Q ss_pred             h-hhcceecc-cCCceEeecccC
Q 047371          199 F-LEDILVSE-KDDWRCVSGTKF  219 (222)
Q Consensus       199 ~-~~~~~~~~-~~~w~~~~~~k~  219 (222)
                      . |..+.... .+.|..+..+|.
T Consensus       171 ~Gf~~~~~~~~~~~~~~~~~~k~  193 (219)
T 3dh0_A          171 AGIRVGRVVEVGKYCFGVYAMIV  193 (219)
T ss_dssp             TTCEEEEEEEETTTEEEEEEECC
T ss_pred             CCCEEEEEEeeCCceEEEEEEec
Confidence            5 76665443 456666666664

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.67  E-value=1.4e-15  Score=119.97  Aligned_cols=117  Identities=14%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      .....++...++++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|++++..+++. .++.+...|...+..
T Consensus        10 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~   88 (197)
T 3eey_A           10 GQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI-DRVTLIKDGHQNMDK   88 (197)
T ss_dssp             HHHHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG-GGEEEECSCGGGGGG
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHhh
Confidence            3344445555778999999999999999998876  4569999999999999999999888764 478888888655421


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecC
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              .             ..++||+|++++++.+            ...+++.+.++|||||.+++..+
T Consensus        89 --------~-------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           89 --------Y-------------IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             --------T-------------CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --------h-------------ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence                    0             3578999999987621            34689999999999999998754

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.66  E-value=1.8e-15  Score=132.27  Aligned_cols=151  Identities=16%  Similarity=0.102  Sum_probs=116.4

Q ss_pred             CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ++...+.+++...+.+|.+...+....++..+.++|++|||+|||+|.+++.++..+.. |+++|+|+.+++.|++|+..
T Consensus       180 E~g~~f~vd~~~~~~tG~f~dqr~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~  258 (393)
T 4dmg_A          180 EDGLRFPIPLALAQKTGYYLDQRENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALR  258 (393)
T ss_dssp             ETTEEEEEETTTCCTTSSCGGGHHHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHH
T ss_pred             ECCEEEEEechhccccCcCCCHHHHHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHH
Confidence            34677888888888889998888888888888778999999999999999999988754 99999999999999999999


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc------------cHHHHHHHHHH
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN------------PLPQLADHIVS  171 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~------------~~~~~l~~~~~  171 (222)
                      +++. .  .+...|...+..                   .  ..+.||+|++++|..            .+..++..+.+
T Consensus       259 ng~~-~--~~~~~D~~~~l~-------------------~--~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~  314 (393)
T 4dmg_A          259 LGLR-V--DIRHGEALPTLR-------------------G--LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALR  314 (393)
T ss_dssp             HTCC-C--EEEESCHHHHHH-------------------T--CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHH
T ss_pred             hCCC-C--cEEEccHHHHHH-------------------H--hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8875 2  344555433210                   0  123499999999862            24578999999


Q ss_pred             cccCCeEEEE-ecCCCCcHHHHHHHHHhh
Q 047371          172 YAKPGAVVGI-SGILSEQLPRIINRYSEF  199 (222)
Q Consensus       172 ~LkpgG~l~~-~~~~~~~~~~~~~~~~~~  199 (222)
                      +|||||.+++ ++........+.+.+...
T Consensus       315 ~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a  343 (393)
T 4dmg_A          315 LLAEEGFLWLSSCSYHLRLEDLLEVARRA  343 (393)
T ss_dssp             TEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999985 555555555555555443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.66  E-value=1.3e-15  Score=128.42  Aligned_cols=146  Identities=21%  Similarity=0.183  Sum_probs=112.2

Q ss_pred             HHHHhhhcCCCcEEEEccCCCHHHHHHH--HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           50 LLLQSLIKGGELFLDYGTGSGILGIAAI--KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        50 ~~l~~~~~~~~~vLD~G~G~G~~~~~la--~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ..+...++++.+|||+|||+|.++..++  ..+..+++|+|+++.+++.|++++...++. .++++...|...+..    
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~----  184 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-GQITLHRQDAWKLDT----  184 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEECCGGGCCC----
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECchhcCCc----
Confidence            3444446789999999999999999884  445679999999999999999999887765 468899888765532    


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccccH------HHHHHHHHHcccCCeEEEEecCCC---------------
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------PQLADHIVSYAKPGAVVGISGILS---------------  186 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~---------------  186 (222)
                                        + ++||+|+++.++++.      ..+++++.+.|||||++++.++..               
T Consensus       185 ------------------~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~  245 (305)
T 3ocj_A          185 ------------------R-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAI  245 (305)
T ss_dssp             ------------------C-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGS
T ss_pred             ------------------c-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeecc
Confidence                              3 789999998887652      237999999999999999865321               


Q ss_pred             -----------------------CcHHHHHHHHHhh-hhcceec--ccCCceEeecccC
Q 047371          187 -----------------------EQLPRIINRYSEF-LEDILVS--EKDDWRCVSGTKF  219 (222)
Q Consensus       187 -----------------------~~~~~~~~~~~~~-~~~~~~~--~~~~w~~~~~~k~  219 (222)
                                             ....++.+.++.. |..+...  ..+.|.++.++|.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          246 DPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred             ccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence                                   2456677777665 6665554  5667777777764

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.66  E-value=7.7e-16  Score=127.13  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=91.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...++. .++.+...|...+..            
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------  110 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ-NRVTGIVGSMDDLPF------------  110 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCC------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC-cCcEEEEcChhhCCC------------
Confidence            3578999999999999999999887679999999999999999999888875 479999988866532            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +.++||+|+++.++++  ...+++++.++|||||.+++.+.
T Consensus       111 ----------~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          111 ----------RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             ----------CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ----------CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence                      5678999999988776  46689999999999999998643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.66  E-value=1.4e-15  Score=120.99  Aligned_cols=110  Identities=18%  Similarity=0.201  Sum_probs=86.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..+++...++++...|...+..       .      
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~-------~------  119 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK-------Q------  119 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT-------S------
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH-------h------
Confidence            688999999999999998777766799999999999999999998888731378888877644311       0      


Q ss_pred             cccccCCCCCCC-eeEEEeccccc--cHHHHHHHH--HHcccCCeEEEEecCCCC
Q 047371          138 SHEIRGISETEE-YDVVIANILLN--PLPQLADHI--VSYAKPGAVVGISGILSE  187 (222)
Q Consensus       138 ~~~~~~~~~~~~-~D~v~~~~~~~--~~~~~l~~~--~~~LkpgG~l~~~~~~~~  187 (222)
                             ...++ ||+|+++++++  ....+++.+  .++|||||.+++++....
T Consensus       120 -------~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          120 -------PQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             -------CCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             -------hccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence                   02467 99999999854  255677878  668999999999754433

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.66  E-value=4e-16  Score=121.03  Aligned_cols=110  Identities=16%  Similarity=0.141  Sum_probs=86.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...++. .++.+...|...+..        .    
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~--------~----   96 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAERAID--------C----   96 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHHHHH--------H----
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECcHHHhHH--------h----
Confidence            367899999999999999998887679999999999999999999887764 368888777644210        0    


Q ss_pred             ccccccCCCCCCCeeEEEeccccc--cHHHHHHHHH--HcccCCeEEEEecCCCCc
Q 047371          137 SSHEIRGISETEEYDVVIANILLN--PLPQLADHIV--SYAKPGAVVGISGILSEQ  188 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~--~~LkpgG~l~~~~~~~~~  188 (222)
                               ..++||+|+++++++  ...+.++.+.  ++|||||.+++.+.....
T Consensus        97 ---------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A           97 ---------LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             ---------BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             ---------hcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence                     235699999999874  3455677776  999999999997554443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.65  E-value=1e-15  Score=127.82  Aligned_cols=134  Identities=18%  Similarity=0.263  Sum_probs=106.1

Q ss_pred             CCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH
Q 047371           23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      ..+...+.+++...+......+.   ...+...+++|++|||+|||+|.+++.+++.+.++|+++|+|+.+++.+++|+.
T Consensus        93 ~E~G~~~~~D~~k~~f~~~~~~e---r~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~  169 (278)
T 3k6r_A           93 VENGIKYKLDVAKIMFSPANVKE---RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH  169 (278)
T ss_dssp             EETTEEEEEETTTSCCCGGGHHH---HHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHH
T ss_pred             EECCEEEEEeccceEEcCCcHHH---HHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHH
Confidence            34567788888754422222222   234455678999999999999999999999887899999999999999999999


Q ss_pred             hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          103 LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      .+++. +++++...|...+.                       +.+.||.|++|+|... .+++..+.++||+||.+.+.
T Consensus       170 ~N~v~-~~v~~~~~D~~~~~-----------------------~~~~~D~Vi~~~p~~~-~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          170 LNKVE-DRMSAYNMDNRDFP-----------------------GENIADRILMGYVVRT-HEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             HTTCT-TTEEEECSCTTTCC-----------------------CCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEEEEE
T ss_pred             HcCCC-CcEEEEeCcHHHhc-----------------------cccCCCEEEECCCCcH-HHHHHHHHHHcCCCCEEEEE
Confidence            99997 57899888876552                       4678999999988653 46788899999999998775


Q ss_pred             cC
Q 047371          183 GI  184 (222)
Q Consensus       183 ~~  184 (222)
                      ++
T Consensus       225 ~~  226 (278)
T 3k6r_A          225 NT  226 (278)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.65  E-value=7.1e-16  Score=127.58  Aligned_cols=109  Identities=21%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (222)
                      +..+.++|......+.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.|++.        .++.+...+++.+.. 
T Consensus        26 p~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~~--------~~v~~~~~~~e~~~~-   95 (257)
T 4hg2_A           26 PRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALRH--------PRVTYAVAPAEDTGL-   95 (257)
T ss_dssp             CHHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCCC--------TTEEEEECCTTCCCC-
T ss_pred             HHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhhc--------CCceeehhhhhhhcc-
Confidence            355667777777777899999999999999999875 6899999999999877532        378898888876643 


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecC
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                           ++++||+|++...+|+  ...+++++.|+|||||.+++.+.
T Consensus        96 ---------------------~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A           96 ---------------------PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             ---------------------CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------------------cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEEC
Confidence                                 6889999999988876  46689999999999999988544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.65  E-value=3.5e-15  Score=125.49  Aligned_cols=104  Identities=12%  Similarity=0.120  Sum_probs=89.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.+|||+|||+|.++..+++. + .+|+|+|+|+.+++.|++++...++. .++.+...|...+             
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------------  134 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVRIQGWEEF-------------  134 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCS-SCEEEEECCGGGC-------------
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECCHHHc-------------
Confidence            467889999999999999999886 6 79999999999999999999888875 4788888776432             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH------------HHHHHHHHHcccCCeEEEEecCCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL------------PQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~------------~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                  .++||+|+++.++++.            ..+++++.++|||||.+++.++..
T Consensus       135 ------------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          135 ------------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             ------------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             ------------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence                        5679999999888777            688999999999999999975543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.65  E-value=2.2e-15  Score=125.51  Aligned_cols=145  Identities=15%  Similarity=0.205  Sum_probs=107.6

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ....+.++|...|.........+.   +...++++.+|||+|||+|.+++.+++. +..+|+|+|+++.+++.|++++..
T Consensus        89 ~g~~f~~~~~~~f~~~~~~~e~~~---~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~  165 (272)
T 3a27_A           89 YGCLFKLDVAKIMWSQGNIEERKR---MAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL  165 (272)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHH---HHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCEEEEEechhEEECCCchHHHHH---HHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            345677777765433222222221   2233678899999999999999999987 456999999999999999999999


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      +++.  ++.+...|...+ .                      ..++||+|+++++. ....++..+.+.|||||.+++++
T Consensus       166 n~l~--~~~~~~~d~~~~-~----------------------~~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~  219 (272)
T 3a27_A          166 NKLN--NVIPILADNRDV-E----------------------LKDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHE  219 (272)
T ss_dssp             TTCS--SEEEEESCGGGC-C----------------------CTTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCCC--CEEEEECChHHc-C----------------------ccCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEE
Confidence            8875  677888776543 1                      24579999999987 46678999999999999999987


Q ss_pred             CCC-----CcHHHHHHHHHh
Q 047371          184 ILS-----EQLPRIINRYSE  198 (222)
Q Consensus       184 ~~~-----~~~~~~~~~~~~  198 (222)
                      ...     +...+..+.+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~  239 (272)
T 3a27_A          220 TVAEKIMYERPIERLKFYAE  239 (272)
T ss_dssp             EEEGGGTTTHHHHHHHHHHH
T ss_pred             cCccccccccHHHHHHHHHH
Confidence            755     334444445444

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.65  E-value=2.3e-15  Score=123.19  Aligned_cols=105  Identities=18%  Similarity=0.267  Sum_probs=91.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++.+|||+|||+|..+..+++....+++|+|+++.+++.|++++...++. .++.+...|...+..            
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------  110 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-DRVKGITGSMDNLPF------------  110 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCSS------------
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCC------------
Confidence            4578899999999999999999875569999999999999999999888876 468999988865532            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                +.++||+|+++.++++  ...+++++.++|||||++++.+
T Consensus       111 ----------~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          111 ----------QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             ----------CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ----------CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence                      5678999999988876  5678999999999999999965

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.65  E-value=3.2e-15  Score=116.34  Aligned_cols=133  Identities=17%  Similarity=0.204  Sum_probs=104.8

Q ss_pred             chhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           43 ATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        43 ~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      ++...+...+...  ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..+++. .++.+...+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~   93 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPE   93 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecCHHH
Confidence            3334444444333  4578899999999999999998876 89999999999999999999887763 377787776543


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                      ..                      ...++||+|+++.++++...+++.+.++|+|||.+++.........++.+.+.+.
T Consensus        94 ~~----------------------~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~  150 (192)
T 1l3i_A           94 AL----------------------CKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL  150 (192)
T ss_dssp             HH----------------------TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred             hc----------------------ccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHC
Confidence            10                      0225799999999888889999999999999999999877667777777777765

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.65  E-value=2.7e-15  Score=131.25  Aligned_cols=142  Identities=14%  Similarity=0.134  Sum_probs=112.3

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ....+.+++...+.+|.+...+....++..+ .++.+|||+|||+|.+++.+++.+..+|+|+|+++.+++.|++++..+
T Consensus       188 ~g~~f~v~~~~~~~tgff~~~~~~~~~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~n  266 (396)
T 3c0k_A          188 HGMKLLVDIQHGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN  266 (396)
T ss_dssp             TTEEEEECTTTSSTTSSCGGGHHHHHHHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeccccccCCcCcCHHHHHHHHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            4567788888767777777666666666665 578999999999999999999887779999999999999999999988


Q ss_pred             CC-CCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc------------ccHHHHHHHHHH
Q 047371          105 NI-GPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL------------NPLPQLADHIVS  171 (222)
Q Consensus       105 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~------------~~~~~~l~~~~~  171 (222)
                      ++ . .++++...|...+..       ..           .....+||+|++++|.            ..+..++..+.+
T Consensus       267 gl~~-~~v~~~~~D~~~~~~-------~~-----------~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~  327 (396)
T 3c0k_A          267 KLDL-SKAEFVRDDVFKLLR-------TY-----------RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQ  327 (396)
T ss_dssp             TCCG-GGEEEEESCHHHHHH-------HH-----------HHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHH
T ss_pred             CCCc-cceEEEECCHHHHHH-------HH-----------HhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence            87 4 378888887654311       00           0024679999999987            446788999999


Q ss_pred             cccCCeEEEEecCCC
Q 047371          172 YAKPGAVVGISGILS  186 (222)
Q Consensus       172 ~LkpgG~l~~~~~~~  186 (222)
                      .|+|||.+++++...
T Consensus       328 ~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          328 LLNEGGILLTFSCSG  342 (396)
T ss_dssp             TEEEEEEEEEEECCT
T ss_pred             hcCCCcEEEEEeCCC
Confidence            999999999975543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.65  E-value=2.4e-16  Score=125.08  Aligned_cols=156  Identities=13%  Similarity=0.092  Sum_probs=89.5

Q ss_pred             chhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           43 ATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        43 ~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      +.+..+.+.+...+   .++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|++++..++.   ++++...|.
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~   88 (215)
T 4dzr_A           12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA---VVDWAAADG   88 (215)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHHH
T ss_pred             ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC---ceEEEEcch
Confidence            33444444444443   578899999999999999998863 46999999999999999998876654   455555554


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----------------------------HHHHHHH
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----------------------------PQLADHI  169 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----------------------------~~~l~~~  169 (222)
                      .....       ..           ....++||+|++|+|+...                             ..+++.+
T Consensus        89 ~~~~~-------~~-----------~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  150 (215)
T 4dzr_A           89 IEWLI-------ER-----------AERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALP  150 (215)
T ss_dssp             HHHHH-------HH-----------HHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCC
T ss_pred             Hhhhh-------hh-----------hhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHH
Confidence            32100       00           0023789999999987531                             5678889


Q ss_pred             HHcccCCeEEEEecCCCCcHHHHHHHHH--hh-hhcceec--ccCCceEeecccC
Q 047371          170 VSYAKPGAVVGISGILSEQLPRIINRYS--EF-LEDILVS--EKDDWRCVSGTKF  219 (222)
Q Consensus       170 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~--~~~~w~~~~~~k~  219 (222)
                      .++|||||++++......+...+.+.+.  .. |..++..  ..+..+.+..+|+
T Consensus       151 ~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~  205 (215)
T 4dzr_A          151 PYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE  205 (215)
T ss_dssp             GGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred             HHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence            9999999995554456677778877777  43 4443332  2333345554443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.65  E-value=5.3e-15  Score=128.64  Aligned_cols=163  Identities=14%  Similarity=0.153  Sum_probs=111.2

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ..+...|+.....+....++++.+.+.  ..++.+|||+|||+|.+++.+++. +..+|+|+|+++.+++.|++++..++
T Consensus       193 ~~~~~~pg~Fs~~~~d~~~~~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ng  270 (375)
T 4dcm_A          193 WTIHNHANVFSRTGLDIGARFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM  270 (375)
T ss_dssp             EEEEECTTCTTCSSCCHHHHHHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             eEEEeCCCcccCCcccHHHHHHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcC
Confidence            445555555444444445555544432  234689999999999999999886 36799999999999999999998887


Q ss_pred             CCC-CceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCC
Q 047371          106 IGP-KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPG  176 (222)
Q Consensus       106 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~Lkpg  176 (222)
                      +.. .++.+...|.....                       +.++||+|++|++++.        ...+++.+.+.||||
T Consensus       271 l~~~~~v~~~~~D~~~~~-----------------------~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg  327 (375)
T 4dcm_A          271 PEALDRCEFMINNALSGV-----------------------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN  327 (375)
T ss_dssp             GGGGGGEEEEECSTTTTC-----------------------CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred             CCcCceEEEEechhhccC-----------------------CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence            641 24667777664321                       5678999999999874        235799999999999


Q ss_pred             eEEEEecCCCCcHHHHHHHHHhhhhcce-ecccCCceEeecc
Q 047371          177 AVVGISGILSEQLPRIINRYSEFLEDIL-VSEKDDWRCVSGT  217 (222)
Q Consensus       177 G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~  217 (222)
                      |.+++.+.......   ..+.+.|...+ ....+++..+...
T Consensus       328 G~l~iv~n~~~~~~---~~l~~~fg~~~~~a~~~~F~V~~~~  366 (375)
T 4dcm_A          328 GELYIVANRHLDYF---HKLKKIFGNCTTIATNNKFVVLKAV  366 (375)
T ss_dssp             EEEEEEEETTSCHH---HHHHHHHSCCEEEEECSSEEEEEEE
T ss_pred             cEEEEEEECCcCHH---HHHHHhcCCEEEEeeCCCEEEEEEc
Confidence            99999754433332   33344444443 3345556555443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.64  E-value=2.7e-15  Score=131.24  Aligned_cols=152  Identities=20%  Similarity=0.224  Sum_probs=112.7

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ....+.+++ ..+.+|.+...+....++....+++++|||+|||+|.+++.++..+..+|+|+|+++.+++.|++++..+
T Consensus       185 ~g~~~~~~~-~~~~tg~f~~~~~~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n  263 (396)
T 2as0_A          185 GRAKFIVDM-RGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN  263 (396)
T ss_dssp             TTEEEEEES-SSSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEec-cccccCccCCHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            346677777 5555566666666666776666578999999999999999999887779999999999999999999988


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc------------cHHHHHHHHHHc
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN------------PLPQLADHIVSY  172 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~------------~~~~~l~~~~~~  172 (222)
                      ++. .++.+...|...+...       +           ....++||+|++++|..            .+..++..+.++
T Consensus       264 ~~~-~~v~~~~~d~~~~~~~-------~-----------~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (396)
T 2as0_A          264 GVE-DRMKFIVGSAFEEMEK-------L-----------QKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL  324 (396)
T ss_dssp             TCG-GGEEEEESCHHHHHHH-------H-----------HHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT
T ss_pred             CCC-ccceEEECCHHHHHHH-------H-----------HhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            875 3788888876443110       0           00256899999999873            356688999999


Q ss_pred             ccCCeEEEEecC-CCCcHHHHHHHH
Q 047371          173 AKPGAVVGISGI-LSEQLPRIINRY  196 (222)
Q Consensus       173 LkpgG~l~~~~~-~~~~~~~~~~~~  196 (222)
                      |+|||.+++++. .......+.+.+
T Consensus       325 LkpgG~lv~~~~~~~~~~~~~~~~v  349 (396)
T 2as0_A          325 VKDGGILVTCSCSQHVDLQMFKDMI  349 (396)
T ss_dssp             EEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHH
Confidence            999998887543 333333344433

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.64  E-value=3.4e-15  Score=115.37  Aligned_cols=120  Identities=17%  Similarity=0.103  Sum_probs=95.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++. .++ +...+......        .  
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~-~~~~d~~~~~~--------~--   90 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS-DRI-AVQQGAPRAFD--------D--   90 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT-TSE-EEECCTTGGGG--------G--
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC-CCE-EEecchHhhhh--------c--
Confidence            457889999999999999998876 5689999999999999999999887765 366 65555422100        0  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                 ..++||+|+++.++++ ..+++.+.+.|||||.+++..........+.+.+...
T Consensus        91 -----------~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  143 (178)
T 3hm2_A           91 -----------VPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQF  143 (178)
T ss_dssp             -----------CCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred             -----------cCCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHc
Confidence                       2278999999998877 7799999999999999999877777777777776665

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.64  E-value=4e-15  Score=129.83  Aligned_cols=156  Identities=12%  Similarity=0.042  Sum_probs=113.4

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ....+.+++.....++....++....++...+.++++|||+|||+|.+++.+++.+..+|+|+|+++.+++.|++|+..+
T Consensus       179 ~g~~f~v~~~~~~~t~ff~~~~~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n  258 (385)
T 2b78_A          179 NGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN  258 (385)
T ss_dssp             TTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT
T ss_pred             CCEEEEEeccccccCCcCCcHHHHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            45778888875555555555555555555554678999999999999999999877679999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHc
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSY  172 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~  172 (222)
                      ++...++.+...|+..+..       ..           .....+||+|+++||...            +.+++..+.+.
T Consensus       259 ~~~~~~v~~~~~D~~~~l~-------~~-----------~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~  320 (385)
T 2b78_A          259 HLDMANHQLVVMDVFDYFK-------YA-----------RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI  320 (385)
T ss_dssp             TCCCTTEEEEESCHHHHHH-------HH-----------HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHT
T ss_pred             CCCccceEEEECCHHHHHH-------HH-----------HHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHh
Confidence            8852278888887654310       00           002457999999998731            34577888999


Q ss_pred             ccCCeEEEEecCCCC-cHHHHHHHHHh
Q 047371          173 AKPGAVVGISGILSE-QLPRIINRYSE  198 (222)
Q Consensus       173 LkpgG~l~~~~~~~~-~~~~~~~~~~~  198 (222)
                      |+|||.+++++.... ..+.+.+.+..
T Consensus       321 L~pgG~l~~~~~~~~~~~~~~~~~i~~  347 (385)
T 2b78_A          321 LSENGLIIASTNAANMTVSQFKKQIEK  347 (385)
T ss_dssp             EEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCcCCHHHHHHHHHH
Confidence            999999999765443 23444444443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.64  E-value=6.7e-15  Score=117.78  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=95.1

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++.  ++.+...+...+..            
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~------------  105 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP--NIKLLWVDGSDLTD------------  105 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS--SEEEEECCSSCGGG------------
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCC--CEEEEeCCHHHHHh------------
Confidence            45789999999999999998876 4579999999999999999999888874  88898888765420            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                              ..+.++||+|+++.+..+           ...+++.+.++|||||.+++.+........+.+.+.+.
T Consensus       106 --------~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  172 (214)
T 1yzh_A          106 --------YFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQY  172 (214)
T ss_dssp             --------TSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             --------hcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHC
Confidence                    014668999999877532           25799999999999999999754444455555555543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.64  E-value=1.6e-15  Score=116.41  Aligned_cols=110  Identities=20%  Similarity=0.266  Sum_probs=84.4

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|++++..+++   ++++...|......       ..     
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~-------~~-----  104 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL---GARVVALPVEVFLP-------EA-----  104 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC---CCEEECSCHHHHHH-------HH-----
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC---ceEEEeccHHHHHH-------hh-----
Confidence            788999999999999999998864 499999999999999999987765   56777776544210       00     


Q ss_pred             cccccCCCCCCCeeEEEecccc-ccHHHHHHHHH--HcccCCeEEEEecCCCCcH
Q 047371          138 SHEIRGISETEEYDVVIANILL-NPLPQLADHIV--SYAKPGAVVGISGILSEQL  189 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~-~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~~  189 (222)
                          .  ...++||+|++++++ ....+.++.+.  ++|||||.+++.+......
T Consensus       105 ----~--~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~  153 (171)
T 1ws6_A          105 ----K--AQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL  153 (171)
T ss_dssp             ----H--HTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred             ----h--ccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence                0  023479999999887 34556777777  9999999999976554443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.64  E-value=6.8e-15  Score=113.77  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=102.8

Q ss_pred             cchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc
Q 047371           42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR  119 (222)
Q Consensus        42 ~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~  119 (222)
                      .+....+...+...  ..++.+|||+|||+|.++..+++ +..+++|+|+++.+++.|++++..+++.  ++.+...+..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~   93 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK--NCQIIKGRAE   93 (183)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC--SEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEECCcc
Confidence            34444444444443  34678999999999999999988 6689999999999999999999888874  7888877654


Q ss_pred             ccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                      .. .                      +.++||+|+++.+ .....+++.+.+.  |||.+++.........++.+.+++.
T Consensus        94 ~~-~----------------------~~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~  147 (183)
T 2yxd_A           94 DV-L----------------------DKLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESR  147 (183)
T ss_dssp             HH-G----------------------GGCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             cc-c----------------------cCCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHc
Confidence            31 1                      3468999999988 7788899999988  9999999877777777888888775

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.64  E-value=3.3e-15  Score=122.74  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=87.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++...++.  ++.+...|...+..            
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~l~~------------   99 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPF------------   99 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCC-CCCS------------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEecHHhCCC------------
Confidence            3578899999999999999998875 59999999999999999998877764  78888888766532            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                ++++||+|+++..+++   ...++.++.++|||||.+++.+
T Consensus       100 ----------~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          100 ----------TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             ----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----------CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence                      5678999999988776   4578999999999999999864

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.64  E-value=1.8e-15  Score=117.79  Aligned_cols=127  Identities=17%  Similarity=0.161  Sum_probs=94.7

Q ss_pred             CcchhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371           41 EHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP  117 (222)
Q Consensus        41 ~~~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~  117 (222)
                      ..+++..+.+.+...+   .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++. .++++...|
T Consensus        24 ~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d  102 (187)
T 2fhp_A           24 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKMD  102 (187)
T ss_dssp             SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESC
T ss_pred             cCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cceEEEECc
Confidence            4455555555554443   368899999999999999888877679999999999999999999887764 478888887


Q ss_pred             CcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--cHHHHHHHH--HHcccCCeEEEEecCCC
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--PLPQLADHI--VSYAKPGAVVGISGILS  186 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~--~~~LkpgG~l~~~~~~~  186 (222)
                      .......     ...             ..++||+|+++++++  .....++.+  .++|+|||.+++.....
T Consensus       103 ~~~~~~~-----~~~-------------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          103 ANRALEQ-----FYE-------------EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             HHHHHHH-----HHH-------------TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHHHHHH-----HHh-------------cCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            6543100     000             256899999999864  245667777  88999999999864443

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.63  E-value=2.2e-15  Score=119.92  Aligned_cols=132  Identities=17%  Similarity=0.149  Sum_probs=93.8

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ..+...++..    .++++..+.+.+...+   .++.+|||+|||+|.+++.++..+..+|+|+|+++.+++.|++++..
T Consensus        24 ~~l~~~~~~~----~rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~   99 (202)
T 2fpo_A           24 RKLPVPDSPG----LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLAT   99 (202)
T ss_dssp             CEEECCCC----------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             cEecCCCCCC----CCCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHH
Confidence            4455544332    3444444444443332   26889999999999999987777667999999999999999999988


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--cHHHHHHHHHH--cccCCeEE
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--PLPQLADHIVS--YAKPGAVV  179 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~--~LkpgG~l  179 (222)
                      +++.  ++++...|...+..                     ...++||+|+++++++  ....+++.+.+  +|+|||.+
T Consensus       100 ~~~~--~v~~~~~D~~~~~~---------------------~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l  156 (202)
T 2fpo_A          100 LKAG--NARVVNSNAMSFLA---------------------QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALI  156 (202)
T ss_dssp             TTCC--SEEEECSCHHHHHS---------------------SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCC--cEEEEECCHHHHHh---------------------hcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEE
Confidence            8873  78888887644210                     0356899999999855  35567777765  59999999


Q ss_pred             EEecCC
Q 047371          180 GISGIL  185 (222)
Q Consensus       180 ~~~~~~  185 (222)
                      ++++..
T Consensus       157 ~i~~~~  162 (202)
T 2fpo_A          157 YVESEV  162 (202)
T ss_dssp             EEEEEG
T ss_pred             EEEECC
Confidence            987544

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.63  E-value=1.5e-15  Score=120.99  Aligned_cols=111  Identities=12%  Similarity=0.023  Sum_probs=83.4

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC----------CCCCceeEEec
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN----------IGPKKIKLHLV  116 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~v~~~~~  116 (222)
                      +.+++..+ ++++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.|+++.....          ....++++...
T Consensus        11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCC-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            44445444 4578999999999999999999886 489999999999999988754210          00136788888


Q ss_pred             CCcccccccccccccchhccccccccCCCCC-CCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEE
Q 047371          117 PDRTFTASMNERVDGVVEYLSSHEIRGISET-EEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~  181 (222)
                      |...+..                      .+ ++||+|+++..++++     ..++++++++|||||++++
T Consensus        90 d~~~l~~----------------------~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           90 DFFALTA----------------------RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             CCSSSTH----------------------HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             ccccCCc----------------------ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            8765532                      22 689999997777653     3478999999999998443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.63  E-value=2.5e-15  Score=121.30  Aligned_cols=122  Identities=12%  Similarity=0.142  Sum_probs=94.8

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++...++.  ++.+...|+..+.             
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~--nv~~~~~Da~~~l-------------   97 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS--NLRVMCHDAVEVL-------------   97 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS--SEEEECSCHHHHH-------------
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC--cEEEEECCHHHHH-------------
Confidence            36789999999999999998875 5578999999999999999999888875  7888888765431             


Q ss_pred             cccccccCCCCCCCeeEEEeccc--ccc---------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          136 LSSHEIRGISETEEYDVVIANIL--LNP---------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~--~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                            ....+.++||.|+++.+  ...         ...+++.+.+.|||||.+++.+......+.+.+.+...
T Consensus        98 ------~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~  166 (218)
T 3dxy_A           98 ------HKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSI  166 (218)
T ss_dssp             ------HHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred             ------HHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence                  00015788999999833  221         12589999999999999999876655566666666654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.63  E-value=5.5e-15  Score=119.74  Aligned_cols=144  Identities=14%  Similarity=0.162  Sum_probs=110.8

Q ss_pred             HHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        49 ~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ++.+..+++++.+|||+|||+|.+++.+++.+ ..+|+|+|+++.+++.|++|+..+++. +++++...|....      
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~i~~~~~d~l~~------   78 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK-EKIQVRLANGLAA------   78 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGG------
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEECchhhh------
Confidence            45667788899999999999999999999874 568999999999999999999999986 4788888876321      


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccc-cccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhccee
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANIL-LNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILV  205 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (222)
                                      +.+..+||+|++... -..+..+++.....|+++|+++++..  .....+.+.+.+. |.....
T Consensus        79 ----------------l~~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           79 ----------------FEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             ----------------CCGGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHHTTEEEEEE
T ss_pred             ----------------cccCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHHCCCEEEEE
Confidence                            102226998886433 23367899999999999999999754  5788888888775 655543


Q ss_pred             ---cccCCceEeecc
Q 047371          206 ---SEKDDWRCVSGT  217 (222)
Q Consensus       206 ---~~~~~w~~~~~~  217 (222)
                         ...+.|..+...
T Consensus       141 ~lv~e~~~~Yeii~~  155 (225)
T 3kr9_A          141 SILEEAGKFYEILVV  155 (225)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEECCEEEEEEEE
Confidence               345666555443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.63  E-value=5.2e-15  Score=120.13  Aligned_cols=144  Identities=13%  Similarity=0.144  Sum_probs=110.3

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      -++.+..+++++.+|+|+|||+|.+++.+++.+ ..+|+|+|+++.+++.|++|+..+++. +++++..+|.....    
T Consensus        11 RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~-~~I~~~~gD~l~~~----   85 (230)
T 3lec_A           11 RLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT-SKIDVRLANGLSAF----   85 (230)
T ss_dssp             HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGGC----
T ss_pred             HHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhcc----
Confidence            345667888999999999999999999999875 568999999999999999999999986 47999888764431    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEe-ccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIA-NILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                                        .+..+||+|++ +..-+-+.++++.....|+++|+++++..  .....+.+.+.+. |....
T Consensus        86 ------------------~~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~--~~~~~lr~~L~~~Gf~i~~  145 (230)
T 3lec_A           86 ------------------EEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN--NREDDLRKWLAANDFEIVA  145 (230)
T ss_dssp             ------------------CGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES--SCHHHHHHHHHHTTEEEEE
T ss_pred             ------------------ccccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC--CChHHHHHHHHHCCCEEEE
Confidence                              12336998764 44444577899999999999999999864  4577888887775 65554


Q ss_pred             ec---ccCCceEeec
Q 047371          205 VS---EKDDWRCVSG  216 (222)
Q Consensus       205 ~~---~~~~w~~~~~  216 (222)
                      ..   ..+.|..+..
T Consensus       146 E~lv~e~~~~Yeii~  160 (230)
T 3lec_A          146 EDILTENDKRYEILV  160 (230)
T ss_dssp             EEEEEC--CEEEEEE
T ss_pred             EEEEEECCEEEEEEE
Confidence            33   4555655544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.62  E-value=6.4e-15  Score=120.44  Aligned_cols=104  Identities=18%  Similarity=0.225  Sum_probs=87.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .++.+...+...+.             
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~-------------   99 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAGYV-------------   99 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTTCC-------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECChHhCC-------------
Confidence            4678999999999999999988764468999999999999999999888775 47889888876542             


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                ..++||+|++...+++   ...+++++.++|||||.+++.+
T Consensus       100 ----------~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          100 ----------ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             ----------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ----------cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence                      3568999999877765   4678999999999999999853

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=4.4e-15  Score=122.79  Aligned_cols=129  Identities=15%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh---cCCCCCceeEEecCCccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL---NNIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      ..++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|++++..   +++. +++.+...|...+....  ....
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~-~~v~~~~~D~~~~~~~~--~~~~  110 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS-ARIEVLEADVTLRAKAR--VEAG  110 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-GGEEEEECCTTCCHHHH--HHTT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-ceEEEEeCCHHHHhhhh--hhhc
Confidence            346789999999999999998876 457999999999999999999887   7765 46888888876541000  0000


Q ss_pred             chhccccccccCCCCCCCeeEEEecccccc---------------------HHHHHHHHHHcccCCeEEEEecCCCCcHH
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNP---------------------LPQLADHIVSYAKPGAVVGISGILSEQLP  190 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  190 (222)
                      +             +.++||+|++|+|+..                     +..+++.+.++|||||.+++. .......
T Consensus       111 ~-------------~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~  176 (260)
T 2ozv_A          111 L-------------PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI-SRPQSVA  176 (260)
T ss_dssp             C-------------CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE-ECGGGHH
T ss_pred             c-------------CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE-EcHHHHH
Confidence            1             4678999999998754                     456799999999999999986 3455677


Q ss_pred             HHHHHHHhhhh
Q 047371          191 RIINRYSEFLE  201 (222)
Q Consensus       191 ~~~~~~~~~~~  201 (222)
                      ++.+.+...|.
T Consensus       177 ~~~~~l~~~~~  187 (260)
T 2ozv_A          177 EIIAACGSRFG  187 (260)
T ss_dssp             HHHHHHTTTEE
T ss_pred             HHHHHHHhcCC
Confidence            77777766543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.62  E-value=1.1e-14  Score=118.37  Aligned_cols=104  Identities=13%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++...++.  ++.+...+...+..            
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~------------   83 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE--NVRFQQGTAESLPF------------   83 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCC--SEEEEECBTTBCCS------------
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC--CeEEEecccccCCC------------
Confidence            5678999999999999999998875 59999999999999999998877765  78888887765432            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ++++||+|+++..+++   ...++.++.++|||||.+++.+.
T Consensus        84 ----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           84 ----------PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             ----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                      5678999999877765   46789999999999999998644

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.62  E-value=4.6e-15  Score=127.36  Aligned_cols=132  Identities=14%  Similarity=0.171  Sum_probs=96.6

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.|++++..+++.   ..+...|....               
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~~~~~d~~~~---------------  257 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE---GEVFASNVFSE---------------  257 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC---CEEEECSTTTT---------------
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CEEEEcccccc---------------
Confidence            56799999999999999998874 358999999999999999999887763   44555554332               


Q ss_pred             ccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhcce-ecc
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDIL-VSE  207 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  207 (222)
                               ..++||+|++|+++++        ...+++++.++|||||.+++.........   ..+...|...+ ...
T Consensus       258 ---------~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~l~~~f~~~~~~~~  325 (343)
T 2pjd_A          258 ---------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP---DVLDETFGFHEVIAQ  325 (343)
T ss_dssp             ---------CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHH---HHHHHHHSCCEEEEE
T ss_pred             ---------ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcH---HHHHHhcCceEEEee
Confidence                     3568999999999874        35689999999999999998644333322   23333333333 345


Q ss_pred             cCCceEeecccC
Q 047371          208 KDDWRCVSGTKF  219 (222)
Q Consensus       208 ~~~w~~~~~~k~  219 (222)
                      ..++..+..+|.
T Consensus       326 ~~gf~v~~~~k~  337 (343)
T 2pjd_A          326 TGRFKVYRAIMT  337 (343)
T ss_dssp             CSSEEEEEEEC-
T ss_pred             CCCEEEEEEEeC
Confidence            677777666654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.62  E-value=4.7e-15  Score=120.86  Aligned_cols=141  Identities=16%  Similarity=0.102  Sum_probs=100.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++.+|||+|||+|..+..++.. +..+|+|+|+++.+++.|++++..+++.  ++++...+...+...           
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~-----------  135 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE--NTTFCHDRAETFGQR-----------  135 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTTC-----------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEeccHHHhccc-----------
Confidence            46789999999999999998864 5579999999999999999999888875  688888876554210           


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC--CCcHHHHHHHHHhh-hhcceec------
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL--SEQLPRIINRYSEF-LEDILVS------  206 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~-~~~~~~~------  206 (222)
                              ....++||+|++.. +..+..+++.+.++|||||.+++..-.  .....++.+.+... +......      
T Consensus       136 --------~~~~~~fD~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  206 (240)
T 1xdz_A          136 --------KDVRESYDIVTARA-VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPI  206 (240)
T ss_dssp             --------TTTTTCEEEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTT
T ss_pred             --------ccccCCccEEEEec-cCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCC
Confidence                    00146899999987 455788999999999999999885321  22233444444443 3332221      


Q ss_pred             ccCCceEeecccC
Q 047371          207 EKDDWRCVSGTKF  219 (222)
Q Consensus       207 ~~~~w~~~~~~k~  219 (222)
                      ..+.|..+..+|.
T Consensus       207 ~~~~~~l~~~~k~  219 (240)
T 1xdz_A          207 EESDRNIMVIRKI  219 (240)
T ss_dssp             TCCEEEEEEEEEC
T ss_pred             CCCceEEEEEEec
Confidence            1245665655554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.61  E-value=9.3e-15  Score=120.69  Aligned_cols=106  Identities=18%  Similarity=0.309  Sum_probs=89.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .++.+...+...+..            
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------  125 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAMDLPF------------  125 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCS------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECccccCCC------------
Confidence            3578899999999999999998764579999999999999999999887775 478888888765532            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ++++||+|+++.++++   ...+++++.++|||||.+++.++
T Consensus       126 ----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          126 ----------EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             ----------CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ----------CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                      5678999999888776   45689999999999999998654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.61  E-value=4.4e-15  Score=129.32  Aligned_cols=138  Identities=17%  Similarity=0.199  Sum_probs=108.6

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ....+.+++...+.+|.+...+.....+..+  ++.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|++++..+
T Consensus       178 ~g~~f~i~~~~~~~~g~f~~~~~~~~~~~~~--~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n  254 (382)
T 1wxx_A          178 GRVRYLVDLRAGQKTGAYLDQRENRLYMERF--RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLN  254 (382)
T ss_dssp             TTEEEEEECSTTSCCCCCGGGHHHHHHGGGC--CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEchhcccCccccchHHHHHHHHhc--CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            3466777887767777777666666666665  7889999999999999999988 679999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc------------cHHHHHHHHHHc
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN------------PLPQLADHIVSY  172 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~------------~~~~~l~~~~~~  172 (222)
                      ++.  ++.+...|+..+...       +           ....++||+|++++|..            .+..++..+.++
T Consensus       255 ~~~--~~~~~~~d~~~~~~~-------~-----------~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (382)
T 1wxx_A          255 GLG--NVRVLEANAFDLLRR-------L-----------EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKL  314 (382)
T ss_dssp             TCT--TEEEEESCHHHHHHH-------H-----------HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHT
T ss_pred             CCC--CceEEECCHHHHHHH-------H-----------HhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHh
Confidence            886  588888876543210       0           00256899999999872            246689999999


Q ss_pred             ccCCeEEEEecCC
Q 047371          173 AKPGAVVGISGIL  185 (222)
Q Consensus       173 LkpgG~l~~~~~~  185 (222)
                      |+|||.+++++..
T Consensus       315 LkpgG~l~~~~~~  327 (382)
T 1wxx_A          315 LKEGGILATASCS  327 (382)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             cCCCCEEEEEECC
Confidence            9999999987553

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.61  E-value=1.8e-14  Score=120.00  Aligned_cols=111  Identities=18%  Similarity=0.237  Sum_probs=90.3

Q ss_pred             HHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        50 ~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      .++..+..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++...++. .++.+...+...+..      
T Consensus        60 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------  131 (285)
T 4htf_A           60 RVLAEMGPQKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVS-DNMQFIHCAAQDVAS------  131 (285)
T ss_dssp             HHHHHTCSSCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCG-GGEEEEESCGGGTGG------
T ss_pred             HHHHhcCCCCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEEcCHHHhhh------
Confidence            3444444457899999999999999999885 68999999999999999999887764 478898888765420      


Q ss_pred             ccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          130 DGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                        .             ..++||+|+++.++++   ...+++++.++|||||.+++..
T Consensus       132 --~-------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          132 --H-------------LETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             --G-------------CSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --h-------------cCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEE
Confidence              0             5678999999988876   4678999999999999999864

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.61  E-value=8.8e-15  Score=136.48  Aligned_cols=140  Identities=16%  Similarity=0.149  Sum_probs=115.5

Q ss_pred             CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      +....+.+++...+.+|.+...+....++.... +|++|||+|||+|.+++.++..+..+|+++|+|+.+++.|++|+..
T Consensus       506 E~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~~-~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~  584 (703)
T 3v97_A          506 EYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMS-KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRL  584 (703)
T ss_dssp             ETTEEEEECSSSSSSCSCCGGGHHHHHHHHHHC-TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             ECCEEEEEeccccccCCCcccHHHHHHHHHHhc-CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            346778888888888888888888888877654 6899999999999999999988777899999999999999999999


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--------------cHHHHHHHH
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--------------PLPQLADHI  169 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--------------~~~~~l~~~  169 (222)
                      +++..+++++...|...+..        .             ..++||+|++++|..              .+.+++..+
T Consensus       585 ngl~~~~v~~i~~D~~~~l~--------~-------------~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a  643 (703)
T 3v97_A          585 NGLTGRAHRLIQADCLAWLR--------E-------------ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDL  643 (703)
T ss_dssp             TTCCSTTEEEEESCHHHHHH--------H-------------CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHH
T ss_pred             cCCCccceEEEecCHHHHHH--------h-------------cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHH
Confidence            99864578898887654310        0             356899999999852              145679999


Q ss_pred             HHcccCCeEEEEecCC
Q 047371          170 VSYAKPGAVVGISGIL  185 (222)
Q Consensus       170 ~~~LkpgG~l~~~~~~  185 (222)
                      .++|+|||.+++++..
T Consensus       644 ~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          644 KRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             HHHEEEEEEEEEEECC
T ss_pred             HHhcCCCcEEEEEECC
Confidence            9999999999997654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.61  E-value=6e-15  Score=117.11  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      ..+..++...++++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++...  .  .++.+...|...+..  
T Consensus        30 ~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~--~~i~~~~~d~~~~~~--  103 (215)
T 2pxx_A           30 SSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V--PQLRWETMDVRKLDF--  103 (215)
T ss_dssp             HHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C--TTCEEEECCTTSCCS--
T ss_pred             HHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C--CCcEEEEcchhcCCC--
Confidence            3466777777788999999999999999999988656899999999999999988753  1  367788877655422  


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEeccccccH------------------HHHHHHHHHcccCCeEEEEecCCC
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------------------PQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------------------~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                          +.++||+|+++.+++++                  ..+++++.++|||||.+++.....
T Consensus       104 --------------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          104 --------------------PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             --------------------CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             --------------------CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence                                56789999998876432                  468999999999999999976544

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.61  E-value=5.9e-15  Score=120.05  Aligned_cols=128  Identities=16%  Similarity=0.184  Sum_probs=98.4

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....+.  .++.+...+...+..              
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~--------------  142 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTP--------------  142 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCC--------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC--ceEEEEEcChhhcCC--------------
Confidence            4789999999999999998877667999999999999999998876542  367787777654422              


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCC--------------CcHHHHHHHHHh
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILS--------------EQLPRIINRYSE  198 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~~~~  198 (222)
                              +.++||+|+++..+++     +..+++++.++|||||++++.+...              ....++.+.+++
T Consensus       143 --------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  214 (241)
T 2ex4_A          143 --------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICS  214 (241)
T ss_dssp             --------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHH
T ss_pred             --------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHH
Confidence                    4568999999887765     3368999999999999999954321              146777777776


Q ss_pred             h-hhcceecccC
Q 047371          199 F-LEDILVSEKD  209 (222)
Q Consensus       199 ~-~~~~~~~~~~  209 (222)
                      . |..+......
T Consensus       215 aGf~~~~~~~~~  226 (241)
T 2ex4_A          215 AGLSLLAEERQE  226 (241)
T ss_dssp             TTCCEEEEEECC
T ss_pred             cCCeEEEeeecC
Confidence            5 7666654433

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.61  E-value=1.1e-14  Score=115.99  Aligned_cols=135  Identities=20%  Similarity=0.201  Sum_probs=100.7

Q ss_pred             hhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           54 SLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        54 ~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.   +     +.+...+...+.           
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~---~-----~~~~~~d~~~~~-----------   98 (211)
T 3e23_A           39 GELPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRL---G-----RPVRTMLFHQLD-----------   98 (211)
T ss_dssp             TTSCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH---T-----SCCEECCGGGCC-----------
T ss_pred             HhcCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhc---C-----CceEEeeeccCC-----------
Confidence            335678999999999999999999885 58999999999999999876   2     234555543331           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCC--------------CcHHHHHH
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILS--------------EQLPRIIN  194 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~  194 (222)
                                  ..++||+|+++.++++.     ..+++++.+.|||||++++.....              ....++.+
T Consensus        99 ------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (211)
T 3e23_A           99 ------------AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRA  166 (211)
T ss_dssp             ------------CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHH
T ss_pred             ------------CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHH
Confidence                        46789999999888764     368999999999999999863322              25677877


Q ss_pred             HHHh-h-hhcceeccc---------CCceEeecccCC
Q 047371          195 RYSE-F-LEDILVSEK---------DDWRCVSGTKFS  220 (222)
Q Consensus       195 ~~~~-~-~~~~~~~~~---------~~w~~~~~~k~~  220 (222)
                      .+++ + |..+.....         ..|..+..++.+
T Consensus       167 ~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~  203 (211)
T 3e23_A          167 RYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPE  203 (211)
T ss_dssp             HHHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             HHHhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCc
Confidence            7776 4 665554321         348777776654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.61  E-value=6.7e-15  Score=123.58  Aligned_cols=102  Identities=16%  Similarity=0.187  Sum_probs=87.3

Q ss_pred             hcCCCcEEEEccCCCHHH-HHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILG-IAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~-~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++++|||+|||+|.++ +.+++...++|+|+|+++.+++.|++++...++  .++++..+|+..+             
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl--~~v~~v~gDa~~l-------------  184 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV--DGVNVITGDETVI-------------  184 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC--CSEEEEESCGGGG-------------
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC--CCeEEEECchhhC-------------
Confidence            678999999999998765 556665568999999999999999999988887  3899998887554             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                 ++++||+|++.........+++++.+.|||||.+++..
T Consensus       185 -----------~d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          185 -----------DGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             -----------GGCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             -----------CCCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence                       46789999987766667889999999999999999853

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.61  E-value=1.5e-14  Score=127.94  Aligned_cols=157  Identities=16%  Similarity=0.125  Sum_probs=115.0

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ...+.++|+..|..+...+..++..++... ..++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~  331 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLN  331 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHc
Confidence            567888887655433333444444443333 346789999999999999999987 579999999999999999999988


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ++.  ++.+...|.......     .+.             ..++||+|++|+|+....++++.+.+ ++|++.++++|.
T Consensus       332 ~~~--~v~f~~~d~~~~l~~-----~~~-------------~~~~fD~Vv~dPPr~g~~~~~~~l~~-~~p~~ivyvsc~  390 (433)
T 1uwv_A          332 GLQ--NVTFYHENLEEDVTK-----QPW-------------AKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCN  390 (433)
T ss_dssp             TCC--SEEEEECCTTSCCSS-----SGG-------------GTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESC
T ss_pred             CCC--ceEEEECCHHHHhhh-----hhh-------------hcCCCCEEEECCCCccHHHHHHHHHh-cCCCeEEEEECC
Confidence            875  899998887553100     000             34579999999999877777776654 799999999988


Q ss_pred             CCCcHHHHHHHHHhhhhcce
Q 047371          185 LSEQLPRIINRYSEFLEDIL  204 (222)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~  204 (222)
                      +....+++....+.++....
T Consensus       391 p~tlard~~~l~~~Gy~~~~  410 (433)
T 1uwv_A          391 PATLARDSEALLKAGYTIAR  410 (433)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE
T ss_pred             hHHHHhhHHHHHHCCcEEEE
Confidence            77777777666555554433

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.60  E-value=1.6e-14  Score=118.08  Aligned_cols=98  Identities=19%  Similarity=0.321  Sum_probs=83.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++..     ..++.+...+...+..              
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~--------------  104 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAIEDIAI--------------  104 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-----CTTEEEEECCGGGCCC--------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-----cCCeEEEEcchhhCCC--------------
Confidence            688999999999999999998876699999999999999998765     1378888887765432              


Q ss_pred             cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              +.++||+|+++.++++   ...+++++.++|||||.++++
T Consensus       105 --------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          105 --------EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             --------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence                    5688999999888776   467899999999999999985

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.60  E-value=1.2e-14  Score=116.95  Aligned_cols=111  Identities=18%  Similarity=0.382  Sum_probs=90.5

Q ss_pred             HHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC---CceeEEecCCccccccccc
Q 047371           51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP---KKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        51 ~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~  127 (222)
                      .+...++++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++...++..   .++.+...+...+..    
T Consensus        23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----   97 (235)
T 3sm3_A           23 IIHNYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF----   97 (235)
T ss_dssp             THHHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS----
T ss_pred             HHHHhCCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC----
Confidence            444556789999999999999999999885 589999999999999999887766531   257788777765432    


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccccH---H---HHHHHHHHcccCCeEEEEecC
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL---P---QLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~---~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                        +.++||+|+++..+++.   .   .+++++.++|||||.+++.++
T Consensus        98 ------------------~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           98 ------------------HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             ------------------CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------------CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence                              56789999998887763   2   689999999999999998654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.60  E-value=1.3e-14  Score=116.53  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=93.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++.  ++.+...|+..+..            
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~--nv~~~~~d~~~l~~------------  102 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ--NVKLLNIDADTLTD------------  102 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS--SEEEECCCGGGHHH------------
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC--CEEEEeCCHHHHHh------------
Confidence            35789999999999999998875 5679999999999999999999888774  78888887754310            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                              ..+.+.||.|+++.+..+           ...+++.+.++|||||.+++.+........+.+.+...
T Consensus       103 --------~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  169 (213)
T 2fca_A          103 --------VFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEY  169 (213)
T ss_dssp             --------HCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             --------hcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence                    014677999998754321           35789999999999999999764444455555555543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.60  E-value=1.7e-14  Score=115.63  Aligned_cols=113  Identities=22%  Similarity=0.231  Sum_probs=90.4

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (222)
                      ...+...+...++++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++....+   .++.+...|...+.. 
T Consensus        25 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~-   99 (227)
T 1ve3_A           25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSF-   99 (227)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCS-
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCC-
Confidence            3444555555566789999999999999999988764 99999999999999999987665   378888887755422 


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEeccc--ccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANIL--LNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~--~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                           +.++||+|+++.+  +++   ...+++++.++|||||.+++..
T Consensus       100 ---------------------~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          100 ---------------------EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             ---------------------CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------------------CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                                 4678999999988  444   3468999999999999998853

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.60  E-value=1e-14  Score=126.97  Aligned_cols=113  Identities=20%  Similarity=0.239  Sum_probs=88.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhc-----C-CCCCceeEEecCCccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALN-----N-IGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~-----~-~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ..++.+|||+|||+|.++..+++.  +..+|+|+|+++.+++.|++++...     + ....++.+...+...+...   
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~---  157 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA---  157 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC---
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc---
Confidence            457889999999999999988875  4569999999999999999988654     3 3334788998887654100   


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ...++             +.++||+|+++.++++   ...+++++.++|||||.+++.+.
T Consensus       158 ~~~~~-------------~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          158 EPEGV-------------PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             BSCCC-------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCC-------------CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            00011             5678999999998876   46789999999999999999643

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.60  E-value=1.7e-14  Score=118.90  Aligned_cols=134  Identities=14%  Similarity=0.048  Sum_probs=94.9

Q ss_pred             HHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh----------cCC-----CCCc
Q 047371           48 CLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL----------NNI-----GPKK  110 (222)
Q Consensus        48 ~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~----------~~~-----~~~~  110 (222)
                      +.+++....  +++.+|||+|||+|..+..|++.+. +|+|+|+|+.+++.|++....          .+.     ...+
T Consensus        56 l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           56 LKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            344444332  4788999999999999999999874 899999999999999775431          000     1137


Q ss_pred             eeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC
Q 047371          111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                      +++...|...+..                     ...++||+|+++..+++     ...+++++.++|||||.+++.++.
T Consensus       135 i~~~~~D~~~l~~---------------------~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~  193 (252)
T 2gb4_A          135 ISLYCCSIFDLPR---------------------ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS  193 (252)
T ss_dssp             EEEEESCTTTGGG---------------------GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             eEEEECccccCCc---------------------ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence            8888888766532                     01378999998776654     345899999999999998643211


Q ss_pred             -----------CCcHHHHHHHHHhhhhcc
Q 047371          186 -----------SEQLPRIINRYSEFLEDI  203 (222)
Q Consensus       186 -----------~~~~~~~~~~~~~~~~~~  203 (222)
                                 .....++.+.+...|+..
T Consensus       194 ~~~~~~~g~~~~~~~~el~~~l~~~f~v~  222 (252)
T 2gb4_A          194 YDPTKHAGPPFYVPSAELKRLFGTKCSMQ  222 (252)
T ss_dssp             CCTTSCCCSSCCCCHHHHHHHHTTTEEEE
T ss_pred             cCCccCCCCCCCCCHHHHHHHhhCCeEEE
Confidence                       134567777777655443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.60  E-value=4.1e-14  Score=114.81  Aligned_cols=107  Identities=13%  Similarity=0.153  Sum_probs=90.0

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...++. +++.+...|......       ..   
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------~~---  138 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE-NQVRIIEGNALEQFE-------NV---  138 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCGGGCHH-------HH---
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHHHH-------hh---
Confidence            47899999999999999999874 4679999999999999999999888875 479999888754310       00   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ..++||+|+++.....+..+++.+.+.|||||++++...
T Consensus       139 ----------~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          139 ----------NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             ----------TTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             ----------ccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence                      257899999998888889999999999999999999543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.60  E-value=4.3e-14  Score=110.16  Aligned_cols=125  Identities=18%  Similarity=0.163  Sum_probs=94.9

Q ss_pred             HHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        50 ~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      .++..+++++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++..       ++.+...+......      
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~d~~~~~~------  103 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFP-------EARWVVGDLSVDQI------  103 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTSCC------
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCC-------CCcEEEcccccCCC------
Confidence            3555557789999999999999999998885 689999999999999988752       46677777654321      


Q ss_pred             ccchhccccccccCCCCCCCeeEEEec-ccccc-----HHHHHHHHHHcccCCeEEEEecCC--CCcHHHHHHHHHhh-h
Q 047371          130 DGVVEYLSSHEIRGISETEEYDVVIAN-ILLNP-----LPQLADHIVSYAKPGAVVGISGIL--SEQLPRIINRYSEF-L  200 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~-~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~-~  200 (222)
                                      +.++||+|+++ ..+++     ...+++.+.++|+|||.+++....  .....++.+.+... |
T Consensus       104 ----------------~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf  167 (195)
T 3cgg_A          104 ----------------SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGL  167 (195)
T ss_dssp             ----------------CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTE
T ss_pred             ----------------CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCC
Confidence                            46789999998 45544     256899999999999999986432  24567777777664 5


Q ss_pred             hcce
Q 047371          201 EDIL  204 (222)
Q Consensus       201 ~~~~  204 (222)
                      ....
T Consensus       168 ~~~~  171 (195)
T 3cgg_A          168 ELEN  171 (195)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            4443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.60  E-value=2.6e-14  Score=114.22  Aligned_cols=98  Identities=14%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..      .++.+...+...+..             
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~-------------  103 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEV-------------  103 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCC-------------
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCC-------------
Confidence            478899999999999999998885 689999999999999998764      266788877765532             


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEecC
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               + ++||+|+++.+++++.     .+++++.+.|||||.+++...
T Consensus       104 ---------~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A          104 ---------P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             ---------C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ---------C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence                     3 7899999998887743     289999999999999999743

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.59  E-value=2.4e-14  Score=114.49  Aligned_cols=104  Identities=16%  Similarity=0.192  Sum_probs=84.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCC---CceeEEecCCcccccccccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGP---KKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++..   .++.+...+......         
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---------   98 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK---------   98 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG---------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc---------
Confidence            46889999999999999999886 44799999999999999999987666541   268888887644321         


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEe
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~  182 (222)
                                   ..++||+|+++.+++++     ..+++++.++|||||.+++.
T Consensus        99 -------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A           99 -------------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             -------------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             -------------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence                         35689999999888753     46799999999999987774

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.59  E-value=2.4e-14  Score=112.39  Aligned_cols=121  Identities=18%  Similarity=0.247  Sum_probs=94.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++...++.  ++.+...|...+.              
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~--------------   93 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLD--NLHTRVVDLNNLT--------------   93 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEECCGGGCC--------------
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCC--CcEEEEcchhhCC--------------
Confidence            367899999999999999999885 59999999999999999998877764  6888877765431              


Q ss_pred             ccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC-------------CCcHHHHHHHHHh
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL-------------SEQLPRIINRYSE  198 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~-------------~~~~~~~~~~~~~  198 (222)
                               ..++||+|+++.++++     ...+++.+.++|||||.+++....             .....++.+.+..
T Consensus        94 ---------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (199)
T 2xvm_A           94 ---------FDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG  164 (199)
T ss_dssp             ---------CCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT
T ss_pred             ---------CCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC
Confidence                     2567999999887765     456899999999999998764321             1245677777666


Q ss_pred             hhhcce
Q 047371          199 FLEDIL  204 (222)
Q Consensus       199 ~~~~~~  204 (222)
                       |+.++
T Consensus       165 -f~~~~  169 (199)
T 2xvm_A          165 -WERVK  169 (199)
T ss_dssp             -SEEEE
T ss_pred             -CeEEE
Confidence             54444

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.59  E-value=4.8e-14  Score=115.64  Aligned_cols=110  Identities=15%  Similarity=0.275  Sum_probs=90.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++. .++++...|......          
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~l~----------  129 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLREGPALQSLE----------  129 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH----------
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH----------
Confidence            347899999999999999999875 3 579999999999999999999988876 478998887654211          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                               .....++||+|+++.....+..+++.+.++|||||++++....
T Consensus       130 ---------~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          130 ---------SLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             ---------TCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             ---------hcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence                     0112458999999988878889999999999999999986554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.59  E-value=1.6e-14  Score=118.27  Aligned_cols=143  Identities=10%  Similarity=0.023  Sum_probs=109.1

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      -++.+..+++++.+|||+|||+|.+++.+++.+ ..+|+|+|+++.+++.|++|+..+++. +++++...|.....    
T Consensus        11 RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~I~v~~gD~l~~~----   85 (244)
T 3gnl_A           11 RLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT-EQIDVRKGNGLAVI----   85 (244)
T ss_dssp             HHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGGC----
T ss_pred             HHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEecchhhcc----
Confidence            355677888999999999999999999999875 568999999999999999999999986 47899888764331    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEe-ccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIA-NILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                                        .+..+||+|++ +..-.-+.++++.....|++++.++++..  .....+.+.+.+. |....
T Consensus        86 ------------------~~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~--~~~~~lr~~L~~~Gf~i~~  145 (244)
T 3gnl_A           86 ------------------EKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN--IAAWQLREWSEQNNWLITS  145 (244)
T ss_dssp             ------------------CGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES--SCHHHHHHHHHHHTEEEEE
T ss_pred             ------------------CccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC--CChHHHHHHHHHCCCEEEE
Confidence                              12235998875 44334477899999999999999999853  4677888888776 65533


Q ss_pred             e---cccCCceEee
Q 047371          205 V---SEKDDWRCVS  215 (222)
Q Consensus       205 ~---~~~~~w~~~~  215 (222)
                      .   ...+.+..+.
T Consensus       146 E~lv~e~~k~Yeii  159 (244)
T 3gnl_A          146 EAILREDNKVYEIM  159 (244)
T ss_dssp             EEEEEETTEEEEEE
T ss_pred             EEEEEECCEEEEEE
Confidence            2   3344444333

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.59  E-value=1.4e-14  Score=124.19  Aligned_cols=142  Identities=18%  Similarity=0.243  Sum_probs=107.3

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ....+.+++...|....+.+.++   .+...+.++.+|||+|||+|.+++. ++ +..+|+|+|+|+.+++.|++++..+
T Consensus       165 ~g~~f~~d~~~~~~~~~~~~er~---~i~~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n  239 (336)
T 2yx1_A          165 NGYRLWVDIAKVYFSPRLGGERA---RIMKKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLN  239 (336)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHH---HHHHHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEehHHhccCCccHHHHH---HHHHhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHc
Confidence            45677777875553333333332   3334556899999999999999999 87 5789999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ++. .++.+...|...+                        . ++||+|++++|... ..+++.+.++|+|||.+++.++
T Consensus       240 ~l~-~~v~~~~~D~~~~------------------------~-~~fD~Vi~dpP~~~-~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          240 KLE-HKIIPILSDVREV------------------------D-VKGNRVIMNLPKFA-HKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             TCT-TTEEEEESCGGGC------------------------C-CCEEEEEECCTTTG-GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCC-CcEEEEECChHHh------------------------c-CCCcEEEECCcHhH-HHHHHHHHHHcCCCCEEEEEEe
Confidence            885 3788888876543                        2 67999999987653 4789999999999999888655


Q ss_pred             CCCcHHHHHHHHHhh
Q 047371          185 LSEQLPRIINRYSEF  199 (222)
Q Consensus       185 ~~~~~~~~~~~~~~~  199 (222)
                      ... .....+.+.+.
T Consensus       293 ~~~-~~~~~~~l~~~  306 (336)
T 2yx1_A          293 GKD-FDKAIKLFEKK  306 (336)
T ss_dssp             ESS-SHHHHHHHHHH
T ss_pred             ecC-chHHHHHHHHh
Confidence            444 45555555543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.59  E-value=1.6e-14  Score=120.92  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=88.7

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....++. .++.+...+...++.             
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~-------------  146 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSFLEIPC-------------  146 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCSS-------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEEcCcccCCC-------------
Confidence            578899999999999999988762359999999999999999998877775 478898888765532             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ++++||+|++..++++   ...+++++.++|||||.+++.+.
T Consensus       147 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          147 ---------EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             ---------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                     5678999999887766   46789999999999999998643

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.59  E-value=1.5e-14  Score=118.08  Aligned_cols=129  Identities=16%  Similarity=0.120  Sum_probs=99.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....    .++.+...+...+..             
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~-------------  154 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATL-------------  154 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCC-------------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCC-------------
Confidence            467899999999999999888765678999999999999999887543    367888877655422             


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCC---------------CCcHHHHHHHH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGIL---------------SEQLPRIINRY  196 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~---------------~~~~~~~~~~~  196 (222)
                               +.++||+|++...++++     ..+++++.++|||||++++.+..               .....++.+.+
T Consensus       155 ---------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  225 (254)
T 1xtp_A          155 ---------PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             ---------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHH
T ss_pred             ---------CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHH
Confidence                     56789999998887764     45799999999999999996531               12346777777


Q ss_pred             Hhh-hhcceecccCCc
Q 047371          197 SEF-LEDILVSEKDDW  211 (222)
Q Consensus       197 ~~~-~~~~~~~~~~~w  211 (222)
                      +.. |..+.......|
T Consensus       226 ~~aGf~~~~~~~~~~~  241 (254)
T 1xtp_A          226 NESGVRVVKEAFQEEW  241 (254)
T ss_dssp             HHHTCCEEEEEECTTC
T ss_pred             HHCCCEEEEeeecCCC
Confidence            664 766666555444

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.59  E-value=1.7e-14  Score=111.67  Aligned_cols=126  Identities=18%  Similarity=0.146  Sum_probs=97.1

Q ss_pred             chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      +.+..+.+.+.....++.+|||+|||+|.++..+++.+  +++|+|+|+.+++.           ..++++...|.....
T Consensus         8 ~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~-----------~~~~~~~~~d~~~~~   74 (170)
T 3q87_B            8 EDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES-----------HRGGNLVRADLLCSI   74 (170)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT-----------CSSSCEEECSTTTTB
T ss_pred             ccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc-----------ccCCeEEECChhhhc
Confidence            44555666665433567899999999999999999876  99999999999887           125678888765421


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecCCCCcHH
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGILSEQLP  190 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  190 (222)
                                             +.++||+|++|+++++            ...++..+.+.+ |||.+++......+..
T Consensus        75 -----------------------~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~  130 (170)
T 3q87_B           75 -----------------------NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPK  130 (170)
T ss_dssp             -----------------------CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHH
T ss_pred             -----------------------ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHH
Confidence                                   4578999999999874            345778888888 9999999877778888


Q ss_pred             HHHHHHHhh-hhccee
Q 047371          191 RIINRYSEF-LEDILV  205 (222)
Q Consensus       191 ~~~~~~~~~-~~~~~~  205 (222)
                      ++.+.+++. |.....
T Consensus       131 ~l~~~l~~~gf~~~~~  146 (170)
T 3q87_B          131 EVLARLEERGYGTRIL  146 (170)
T ss_dssp             HHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHCCCcEEEE
Confidence            888888774 554443

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.59  E-value=2.7e-14  Score=114.70  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=89.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++. .++++...+......       .+  
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------~~--  132 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPAKDTLA-------EL--  132 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH-------HH--
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeCCHHHHHH-------Hh--
Confidence            46889999999999999999875 3 589999999999999999999888876 468888887643310       00  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                             ..-...++||+|+++.+...+..+++.+.++|||||++++....
T Consensus       133 -------~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          133 -------IHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             -------HTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             -------hhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence                   00001278999999988877889999999999999999996543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.59  E-value=1.3e-14  Score=118.98  Aligned_cols=103  Identities=19%  Similarity=0.201  Sum_probs=85.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+++....    .++.+...|...+..            
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~------------  116 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEF------------  116 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCC------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCC------------
Confidence            4578899999999999999988753469999999999999999876543    378888888765532            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +.++||+|+++.+++++     ..+++++.++|||||.+++.+.
T Consensus       117 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          117 ----------PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             ----------CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence                      57889999999888775     3479999999999999999654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.59  E-value=3.2e-14  Score=115.22  Aligned_cols=110  Identities=18%  Similarity=0.195  Sum_probs=90.9

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      ..+...+...++++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..     ..++.+...+...+..  
T Consensus        41 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~--  112 (242)
T 3l8d_A           41 STIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGE-----GPDLSFIKGDLSSLPF--  112 (242)
T ss_dssp             TTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTTC-----BTTEEEEECBTTBCSS--
T ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhcc-----cCCceEEEcchhcCCC--
Confidence            34566677777889999999999999999999885 589999999999999988741     1377888888765532  


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                          +.++||+|+++..+++   ...+++++.++|||||++++..
T Consensus       113 --------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          113 --------------------ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             --------------------CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------------------CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence                                5788999999888776   4578999999999999999864

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.59  E-value=2.8e-14  Score=114.16  Aligned_cols=104  Identities=18%  Similarity=0.264  Sum_probs=84.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCC---CceeEEecCCcccccccccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGP---KKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|++++...++..   .++++...+......         
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---------   98 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK---------   98 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG---------
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc---------
Confidence            468899999999999999998763 4799999999999999999987666541   168888887644321         


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEe
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~  182 (222)
                                   ..++||+|+++.+++++     ..+++++.+.|||||.++..
T Consensus        99 -------------~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           99 -------------RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             -------------GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             -------------ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence                         45789999998888763     36799999999999977764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.58  E-value=1.3e-14  Score=122.66  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=89.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++. .++.+...|...+..             
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------------  181 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID-DHVRSRVCNMLDTPF-------------  181 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCC-------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhcCCC-------------
Confidence            468899999999999999998863368999999999999999999988876 479999988866532             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEec
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                               +.++||+|+++..+++  ...+++++.++|||||.+++.+
T Consensus       182 ---------~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          182 ---------DKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             ---------CTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------CCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence                     5678999999887766  4678999999999999999854

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.58  E-value=2.2e-14  Score=116.08  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=100.4

Q ss_pred             HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .+..++.....++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++....+.. .++.+...|...+.    
T Consensus        55 ~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----  128 (235)
T 3lcc_A           55 LIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKA-EYFSFVKEDVFTWR----  128 (235)
T ss_dssp             HHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGG-GGEEEECCCTTTCC----
T ss_pred             HHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCC-cceEEEECchhcCC----
Confidence            3444554443345699999999999999887754 68999999999999999988754432 47888888876542    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCC----------CcHHH
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILS----------EQLPR  191 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~  191 (222)
                                         +.++||+|+++.++++     ...+++.+.++|||||.+++..+..          ....+
T Consensus       129 -------------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (235)
T 3lcc_A          129 -------------------PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVST  189 (235)
T ss_dssp             -------------------CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHH
T ss_pred             -------------------CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHH
Confidence                               4568999999887764     4568999999999999999854422          34567


Q ss_pred             HHHHHHhh-hhccee
Q 047371          192 IINRYSEF-LEDILV  205 (222)
Q Consensus       192 ~~~~~~~~-~~~~~~  205 (222)
                      +.+.+... |..++.
T Consensus       190 ~~~~l~~~Gf~~~~~  204 (235)
T 3lcc_A          190 FEEVLVPIGFKAVSV  204 (235)
T ss_dssp             HHHHHGGGTEEEEEE
T ss_pred             HHHHHHHcCCeEEEE
Confidence            77777764 655543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.58  E-value=8.9e-15  Score=120.95  Aligned_cols=131  Identities=11%  Similarity=0.019  Sum_probs=90.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC---------------------------C
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP---------------------------K  109 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------------------------~  109 (222)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.......                           .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            4678999999999988887777766789999999999999998875432110                           0


Q ss_pred             cee-EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-------HHHHHHHHHcccCCeEEEE
Q 047371          110 KIK-LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-------PQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       110 ~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-------~~~l~~~~~~LkpgG~l~~  181 (222)
                      ++. +...|.....        ++         .+ ...++||+|+++..+++.       ..++++++++|||||++++
T Consensus       134 ~i~~~~~~D~~~~~--------~~---------~~-~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~  195 (263)
T 2a14_A          134 AVKRVLKCDVHLGN--------PL---------AP-AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT  195 (263)
T ss_dssp             HEEEEEECCTTSSS--------TT---------TT-CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhheEEeccccCCC--------CC---------Cc-cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            121 4444443210        00         00 025689999999887653       4579999999999999999


Q ss_pred             ecCCC---------------CcHHHHHHHHHhh-hhccee
Q 047371          182 SGILS---------------EQLPRIINRYSEF-LEDILV  205 (222)
Q Consensus       182 ~~~~~---------------~~~~~~~~~~~~~-~~~~~~  205 (222)
                      ++...               -...++.+.+... |..++.
T Consensus       196 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~  235 (263)
T 2a14_A          196 TVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL  235 (263)
T ss_dssp             EEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             EEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEE
Confidence            75332               2566788888764 655554

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.58  E-value=2.9e-14  Score=119.64  Aligned_cols=119  Identities=14%  Similarity=0.215  Sum_probs=91.7

Q ss_pred             HHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHH--hCCCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeEEecCCccc
Q 047371           46 KLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIK--FGAAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        46 ~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~--~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~~~~~~  121 (222)
                      ..+.+.+..+ .+++.+|||+|||+|..+..+++  .+..+|+|+|+++.+++.|++++... +.. .++.+...+...+
T Consensus        23 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~v~~~~~d~~~~  101 (299)
T 3g5t_A           23 SDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY-KNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CC-TTEEEEECCTTCC
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCC-CceEEEEcCHHhC
Confidence            4455555555 45789999999999999999986  35789999999999999999998776 222 4889999988765


Q ss_pred             ccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEE
Q 047371          122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~  181 (222)
                      ...   .....             ..++||+|+++.++++  ...+++++.++|||||.+++
T Consensus       102 ~~~---~~~~~-------------~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          102 KFL---GADSV-------------DKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             GGG---CTTTT-------------TSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             Ccc---ccccc-------------cCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            320   00000             1378999999888776  45689999999999999988

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.58  E-value=2.9e-14  Score=118.77  Aligned_cols=103  Identities=17%  Similarity=0.205  Sum_probs=86.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.+|||+|||+|.++..+++ .+ .+++|+|+++.+++.|++++...++. .++.+...|...+             
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~-------------  126 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENL-RSKRVLLAGWEQF-------------  126 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEESCGGGC-------------
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCC-CCeEEEECChhhC-------------
Confidence            45788999999999999999884 55 59999999999999999998877765 4788887776433             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                 + ++||+|++..+++++     ..+++++.++|||||.+++..+.
T Consensus       127 -----------~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          127 -----------D-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             -----------C-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -----------C-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                       4 789999998887664     56899999999999999996543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.58  E-value=5.1e-14  Score=113.04  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=89.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++++...+......       .+. 
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------~~~-  127 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-DRVEVRTGLALDSLQ-------QIE-  127 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH-------HHH-
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-------HHH-
Confidence            47899999999999999999876 3 579999999999999999999888875 468898887643210       000 


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              . ...++||+|+++.+...+..+++.+.++|||||++++....
T Consensus       128 --------~-~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          128 --------N-EKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             --------H-TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             --------h-cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence                    0 01267999999998888889999999999999999986543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.57  E-value=1.8e-14  Score=110.76  Aligned_cols=121  Identities=12%  Similarity=0.140  Sum_probs=95.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++... +++|+|+++.+++.++++     .  .++.+...+ ..+              
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~--~~v~~~~~d-~~~--------------   71 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----F--DSVITLSDP-KEI--------------   71 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----C--TTSEEESSG-GGS--------------
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----C--CCcEEEeCC-CCC--------------
Confidence            45788999999999999999988764 999999999999999887     1  267777666 221              


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCC------------CcHHHHHHHHHhhh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILS------------EQLPRIINRYSEFL  200 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~~~~~~  200 (222)
                                +.++||+|+++.++++   ...+++++.+.|||||.+++..+..            ....++.+.++ +|
T Consensus        72 ----------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf  140 (170)
T 3i9f_A           72 ----------PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NF  140 (170)
T ss_dssp             ----------CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TE
T ss_pred             ----------CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-Cc
Confidence                      5778999999988876   4678999999999999999964422            24567777777 87


Q ss_pred             hcceecccCC
Q 047371          201 EDILVSEKDD  210 (222)
Q Consensus       201 ~~~~~~~~~~  210 (222)
                      ..++......
T Consensus       141 ~~~~~~~~~~  150 (170)
T 3i9f_A          141 VVEKRFNPTP  150 (170)
T ss_dssp             EEEEEECSST
T ss_pred             EEEEccCCCC
Confidence            7776665553

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.57  E-value=2.8e-14  Score=113.08  Aligned_cols=117  Identities=18%  Similarity=0.115  Sum_probs=92.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++...++.  ++.+...+...+.              
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~--------------  128 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE--NIEPVQSRVEEFP--------------  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEECCTTTSC--------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEecchhhCC--------------
Confidence            4789999999999999998875 5679999999999999999999888775  5888888775441              


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhc
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLED  202 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  202 (222)
                               +.++||+|+++. ++.+..+++.+.+.|+|||.+++.. ......++.+.+. .|..
T Consensus       129 ---------~~~~~D~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~-g~~~  182 (207)
T 1jsx_A          129 ---------SEPPFDGVISRA-FASLNDMVSWCHHLPGEQGRFYALK-GQMPEDEIALLPE-EYQV  182 (207)
T ss_dssp             ---------CCSCEEEEECSC-SSSHHHHHHHHTTSEEEEEEEEEEE-SSCCHHHHHTSCT-TEEE
T ss_pred             ---------ccCCcCEEEEec-cCCHHHHHHHHHHhcCCCcEEEEEe-CCCchHHHHHHhc-CCce
Confidence                     356899999876 4567889999999999999999863 3344455554443 4433

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=6e-14  Score=110.84  Aligned_cols=119  Identities=14%  Similarity=0.165  Sum_probs=94.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .+.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.       .++.+...+...+..              
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~--------------   98 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTH-------PSVTFHHGTITDLSD--------------   98 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHTT-CCEEEECCCHHHHHHHHHHC-------TTSEEECCCGGGGGG--------------
T ss_pred             CCCeEEEecCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------CCCeEEeCccccccc--------------
Confidence            48899999999999999999885 58999999999999998862       267788777655432              


Q ss_pred             cccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCC---------------CcHHHHHHHHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILS---------------EQLPRIINRYS  197 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~~  197 (222)
                              +.++||+|+++..++++     ..+++++.++|||||.+++.....               ....++.+.++
T Consensus        99 --------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (203)
T 3h2b_A           99 --------SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALE  170 (203)
T ss_dssp             --------SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHH
T ss_pred             --------CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHH
Confidence                    56889999998877664     568999999999999999865432               23677777777


Q ss_pred             hh-hhcceec
Q 047371          198 EF-LEDILVS  206 (222)
Q Consensus       198 ~~-~~~~~~~  206 (222)
                      +. |..+...
T Consensus       171 ~~Gf~~~~~~  180 (203)
T 3h2b_A          171 TAGFQVTSSH  180 (203)
T ss_dssp             HTTEEEEEEE
T ss_pred             HCCCcEEEEE
Confidence            65 6555544

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.56  E-value=1.4e-14  Score=117.59  Aligned_cols=105  Identities=14%  Similarity=0.130  Sum_probs=81.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++....+   .++.+...+...+.       .++   
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~-------~~~---  124 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVA-------PTL---  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHG-------GGS---
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHhh-------ccc---
Confidence            46788999999999999999987666699999999999999999887655   36888887765431       011   


Q ss_pred             cccccccCCCCCCCeeEEEe-cccc--c--c---HHHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIA-NILL--N--P---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~-~~~~--~--~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                ++++||+|++ ....  .  +   ...+++++.++|||||++++..
T Consensus       125 ----------~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          125 ----------PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             ----------CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ----------CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence                      5678999999 2221  1  1   2356899999999999999853

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.56  E-value=4.9e-14  Score=115.39  Aligned_cols=118  Identities=24%  Similarity=0.331  Sum_probs=97.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++...++. .++++...|.....           
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----------  158 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-DRVTIKLKDIYEGI-----------  158 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-TTEEEECSCGGGCC-----------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-CceEEEECchhhcc-----------
Confidence            567899999999999999998876 3 689999999999999999999888875 35888887764321           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                  +.++||+|+++++.  ...+++++.+.|+|||.+++......+..++.+.+.+.
T Consensus       159 ------------~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  210 (255)
T 3mb5_A          159 ------------EEENVDHVILDLPQ--PERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREF  210 (255)
T ss_dssp             ------------CCCSEEEEEECSSC--GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             ------------CCCCcCEEEECCCC--HHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence                        56779999998764  35689999999999999999876667777777777654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.56  E-value=7.8e-14  Score=112.59  Aligned_cols=105  Identities=21%  Similarity=0.286  Sum_probs=86.1

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++....+    ++.+...|...+.             
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~-------------  105 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSKYD-------------  105 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCTTTCC-------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCchhccC-------------
Confidence            46789999999999999998876 35799999999999999998875443    6888888876653             


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEecCCCCc
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGISGILSEQ  188 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~~~~~~~  188 (222)
                                ..++||+|+++.++++..     .+++++.++|||||.+++.+.....
T Consensus       106 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  153 (234)
T 3dtn_A          106 ----------FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE  153 (234)
T ss_dssp             ----------CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred             ----------CCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence                      237899999998887742     4899999999999999997654433

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.56  E-value=6.1e-14  Score=112.80  Aligned_cols=125  Identities=12%  Similarity=0.213  Sum_probs=95.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.|++++...++. +++++...|......       .+  
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~-------~~--  126 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-DKVTILNGASQDLIP-------QL--  126 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHGG-------GT--
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CceEEEECCHHHHHH-------HH--
Confidence            46889999999999999999974  3579999999999999999999988875 478898887643211       00  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHH---HHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQ---LADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~---~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                             ..-...++||+|+++...+++..   ++..+ ++|||||++++.........++.+.+...
T Consensus       127 -------~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  186 (221)
T 3u81_A          127 -------KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGS  186 (221)
T ss_dssp             -------TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHC
T ss_pred             -------HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhC
Confidence                   00001268999999987776654   45555 99999999999877666667777776654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.56  E-value=3.1e-14  Score=113.20  Aligned_cols=100  Identities=12%  Similarity=0.131  Sum_probs=83.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...++.  ++++...|......            
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~------------  139 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH--NVSTRHGDGWQGWQ------------  139 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCG------------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC--ceEEEECCcccCCc------------
Confidence            467899999999999999999988 479999999999999999999888875  78888887654321            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                ..++||+|+++..++++.   +.+.++|||||++++..
T Consensus       140 ----------~~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          140 ----------ARAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLPV  174 (210)
T ss_dssp             ----------GGCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEEE
T ss_pred             ----------cCCCccEEEEccchhhhh---HHHHHhcccCcEEEEEE
Confidence                      356899999988777654   36889999999999964

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.56  E-value=9.6e-14  Score=114.15  Aligned_cols=107  Identities=15%  Similarity=0.173  Sum_probs=86.3

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (222)
                      ...+..++....+++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..       ++.+...|...+.  
T Consensus        37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~--  106 (263)
T 3pfg_A           37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP-------DAVLHHGDMRDFS--  106 (263)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTCC--
T ss_pred             HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-------CCEEEECChHHCC--
Confidence            344555565556678999999999999999998875 589999999999999998742       5678888776542  


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecc-ccccH------HHHHHHHHHcccCCeEEEEe
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANI-LLNPL------PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~-~~~~~------~~~l~~~~~~LkpgG~l~~~  182 (222)
                                           ..++||+|+++. +++++      ..+++++.++|||||.+++.
T Consensus       107 ---------------------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          107 ---------------------LGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             ---------------------CSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             ---------------------ccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                                 357899999987 77664      34799999999999999995

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.56  E-value=2.6e-14  Score=114.00  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=87.1

Q ss_pred             HHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371           47 LCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        47 ~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (222)
                      ....++...  ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+    ++.+...|...+.  
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~--  110 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS----HISWAATDILQFS--  110 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS----SEEEEECCTTTCC--
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCC----CeEEEEcchhhCC--
Confidence            344444433  3456799999999999999998875 689999999999999999876432    7888888876542  


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEeccccccH------HHHHHHHHHcccCCeEEEEec
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                           +.++||+|+++.+++++      ..+++++.++|||||.++++.
T Consensus       111 ---------------------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          111 ---------------------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             ---------------------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---------------------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence                                 46789999999888763      356999999999999999954

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.56  E-value=3.7e-14  Score=122.15  Aligned_cols=105  Identities=20%  Similarity=0.199  Sum_probs=89.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|.+++.++..  +..+++|+|+++.+++.|++++...++.  ++++...|...+..          
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~--~i~~~~~D~~~~~~----------  268 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS--WIRFLRADARHLPR----------  268 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT--TCEEEECCGGGGGG----------
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC--ceEEEeCChhhCcc----------
Confidence            457889999999999999998875  3578999999999999999999998885  78899988866532          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  +.+.||+|++|+|+..           +..+++.+.+.|||||.+++.+.
T Consensus       269 ------------~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          269 ------------FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             ------------TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             ------------ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                        4566899999999853           35688999999999999998644

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.56  E-value=6.4e-14  Score=113.34  Aligned_cols=109  Identities=14%  Similarity=0.099  Sum_probs=85.5

Q ss_pred             HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .+.+++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+.   ++.+...+...+.    
T Consensus        26 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~----   97 (246)
T 1y8c_A           26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLN----   97 (246)
T ss_dssp             HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCC----
T ss_pred             HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCC---CeEEEecccccCC----
Confidence            3344443333467899999999999999998875 6899999999999999998876653   5677777665442    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecc-ccccH------HHHHHHHHHcccCCeEEEEe
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANI-LLNPL------PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~-~~~~~------~~~l~~~~~~LkpgG~l~~~  182 (222)
                                         ..++||+|+++. +++++      ..+++++.++|||||.+++.
T Consensus        98 -------------------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           98 -------------------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -------------------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -------------------ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                               237899999987 77664      45799999999999999984

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.56  E-value=4.6e-14  Score=116.76  Aligned_cols=113  Identities=20%  Similarity=0.275  Sum_probs=92.3

Q ss_pred             HHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           47 LCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        47 ~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      .+..++...  ++++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++.  ++.+...|...+..
T Consensus        24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~  101 (276)
T 3mgg_A           24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK--NVKFLQANIFSLPF  101 (276)
T ss_dssp             HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGCCS
T ss_pred             HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEcccccCCC
Confidence            344444433  467899999999999999998876 3579999999999999999999887775  78888887765432


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                            +.++||+|+++..+++   ...+++++.++|||||.+++..
T Consensus       102 ----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          102 ----------------------EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             ----------------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----------------------CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence                                  5678999999888766   4578999999999999999853

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.56  E-value=2.2e-14  Score=117.50  Aligned_cols=111  Identities=19%  Similarity=0.196  Sum_probs=89.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|++++...++. +++++..+|+.........   .-  
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~~~~~---~~--  132 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-HKIKLRLGPALDTLHSLLN---EG--  132 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-TTEEEEESCHHHHHHHHHH---HH--
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHhh---cc--
Confidence            46789999999999999999874 2 579999999999999999999988876 5899998887543110000   00  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 ..++||+|+++.....+..+++.+.++|||||++++...
T Consensus       133 -----------~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          133 -----------GEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             -----------CSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             -----------CCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECC
Confidence                       147899999998877788899999999999999999644

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.56  E-value=6.6e-14  Score=116.80  Aligned_cols=141  Identities=16%  Similarity=0.160  Sum_probs=105.1

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccch
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .++...++++...|+..+..          
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~----------  143 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA----------  143 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH----------
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh----------
Confidence            45789999999999999999887 568999999999999999998754  23433588999888754311          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEecCC----CCcHHHHHHHHHhhhhc
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISGIL----SEQLPRIINRYSEFLED  202 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~~  202 (222)
                               .  ..++||+|+++++...       ..++++.+.+.|||||.+++....    ......+.+.+.+.|..
T Consensus       144 ---------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  212 (275)
T 1iy9_A          144 ---------K--SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPI  212 (275)
T ss_dssp             ---------T--CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             ---------h--CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCC
Confidence                     0  3568999999876532       257999999999999999996322    23345666667766655


Q ss_pred             ceec-------ccCCceEeeccc
Q 047371          203 ILVS-------EKDDWRCVSGTK  218 (222)
Q Consensus       203 ~~~~-------~~~~w~~~~~~k  218 (222)
                      ....       ..+.|..+..+|
T Consensus       213 v~~~~~~vp~~~~g~w~~~~ask  235 (275)
T 1iy9_A          213 TKLYTANIPTYPSGLWTFTIGSK  235 (275)
T ss_dssp             EEEEEECCTTSGGGCEEEEEEES
T ss_pred             eEEEEEecCcccCcceEEEEeeC
Confidence            4432       257898877766

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.55  E-value=3.9e-14  Score=120.35  Aligned_cols=124  Identities=15%  Similarity=0.160  Sum_probs=92.9

Q ss_pred             ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      .|..|..........++...  .+++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.+++++..+++.  ++
T Consensus        94 ~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~--~v  171 (315)
T 1ixk_A           94 EFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL--NV  171 (315)
T ss_dssp             HHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC--SE
T ss_pred             hHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--eE
Confidence            34444443333333333222  467899999999999999999875  3479999999999999999999988875  68


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHH
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLA  166 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l  166 (222)
                      .+...|...+..                      ..++||+|++++|+..                         ...++
T Consensus       172 ~~~~~D~~~~~~----------------------~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L  229 (315)
T 1ixk_A          172 ILFHSSSLHIGE----------------------LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLL  229 (315)
T ss_dssp             EEESSCGGGGGG----------------------GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHH
T ss_pred             EEEECChhhccc----------------------ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHH
Confidence            888877655421                      2457999999887532                         14689


Q ss_pred             HHHHHcccCCeEEEEec
Q 047371          167 DHIVSYAKPGAVVGISG  183 (222)
Q Consensus       167 ~~~~~~LkpgG~l~~~~  183 (222)
                      +++.++|||||.+++++
T Consensus       230 ~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          230 EKGLEVLKPGGILVYST  246 (315)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhCCCCCEEEEEe
Confidence            99999999999999864

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.55  E-value=6.7e-14  Score=123.53  Aligned_cols=138  Identities=22%  Similarity=0.307  Sum_probs=102.9

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ...+.++|+..| +.+......+...+.. ..++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++++..++
T Consensus       260 g~~f~~~~~~F~-q~n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ng  336 (425)
T 2jjq_A          260 DVDYLIHPNSFF-QTNSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINN  336 (425)
T ss_dssp             TEEEEECTTSCC-CSBHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcccccc-ccCHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence            467778887544 3333344444444434 6778999999999999999999874 699999999999999999998887


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEEecC
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~~~~  184 (222)
                      +.   +.+...|...+.                        ..+||+|++++|...... +++.+. .|+|+|.+++++.
T Consensus       337 l~---v~~~~~d~~~~~------------------------~~~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvsc~  388 (425)
T 2jjq_A          337 VD---AEFEVASDREVS------------------------VKGFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVSCN  388 (425)
T ss_dssp             CC---EEEEECCTTTCC------------------------CTTCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred             Cc---EEEEECChHHcC------------------------ccCCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEECC
Confidence            63   788888775541                        227999999999765444 566554 5999999999986


Q ss_pred             CCCcHHHHHH
Q 047371          185 LSEQLPRIIN  194 (222)
Q Consensus       185 ~~~~~~~~~~  194 (222)
                      +....+++..
T Consensus       389 p~tlarDl~~  398 (425)
T 2jjq_A          389 PETFARDVKM  398 (425)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHhHHhh
Confidence            6555555543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.55  E-value=1.7e-13  Score=109.81  Aligned_cols=104  Identities=16%  Similarity=0.133  Sum_probs=75.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+.+.+...    .++.+...|......     ..+   
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~----~~v~~~~~d~~~~~~-----~~~---  122 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWK-----YSG---  122 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGG-----TTT---
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC----CCeEEEEcCCCCchh-----hcc---
Confidence            467899999999999999988875 4468999999999887766655432    256666665543200     000   


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHH-HHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLP-QLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (222)
                                 ..++||+|+++...+... .+++++.+.|||||.+++.
T Consensus       123 -----------~~~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          123 -----------IVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             -----------TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------cccceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence                       236899999986443323 3589999999999999986

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.55  E-value=5.7e-14  Score=118.37  Aligned_cols=141  Identities=14%  Similarity=0.100  Sum_probs=101.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccch
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .++...++++...|+..+..          
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~----------  158 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----------  158 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh----------
Confidence            45789999999999999999886 568999999999999999998754  33323478888887644310          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccc--------cHHHHHHHHHHcccCCeEEEEecCC----CCcHHHHHHHHHhhhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLN--------PLPQLADHIVSYAKPGAVVGISGIL----SEQLPRIINRYSEFLE  201 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~  201 (222)
                                 ...++||+|+++++..        ...++++.+.+.|||||.+++....    ......+.+.+.+.|.
T Consensus       159 -----------~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  227 (296)
T 1inl_A          159 -----------KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP  227 (296)
T ss_dssp             -----------GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCS
T ss_pred             -----------hCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCC
Confidence                       0356799999987543        1367899999999999999996322    2334556666666665


Q ss_pred             cceecc-------cCCceEeeccc
Q 047371          202 DILVSE-------KDDWRCVSGTK  218 (222)
Q Consensus       202 ~~~~~~-------~~~w~~~~~~k  218 (222)
                      .+....       .+.|..+.++|
T Consensus       228 ~v~~~~~~vp~~p~g~~~f~~as~  251 (296)
T 1inl_A          228 ITRVYLGFMTTYPSGMWSYTFASK  251 (296)
T ss_dssp             EEEEEEEECTTSTTSEEEEEEEES
T ss_pred             ceEEEEeecCccCCCceEEEEecC
Confidence            544322       56787776665

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.55  E-value=4e-14  Score=116.46  Aligned_cols=104  Identities=17%  Similarity=0.241  Sum_probs=85.8

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++.+|||+|||+|..++.++.. +..+|+++|+++.+++.|++++..+++.  ++++...+...+...           
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~--~v~~~~~d~~~~~~~-----------  145 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK--GARALWGRAEVLARE-----------  145 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEECCHHHHTTS-----------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--ceEEEECcHHHhhcc-----------
Confidence            35789999999999999998875 6689999999999999999999988886  688988887654210           


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              -...++||+|+++.. ..+..+++.+.++|||||++++.
T Consensus       146 --------~~~~~~fD~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~~  183 (249)
T 3g89_A          146 --------AGHREAYARAVARAV-APLCVLSELLLPFLEVGGAAVAM  183 (249)
T ss_dssp             --------TTTTTCEEEEEEESS-CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             --------cccCCCceEEEECCc-CCHHHHHHHHHHHcCCCeEEEEE
Confidence                    002478999999764 34788999999999999998874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.55  E-value=7.3e-14  Score=118.13  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=86.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+++....++. .++.+...|...+             
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------------  152 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTN-RSRQVLLQGWEDF-------------  152 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCGGGC-------------
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChHHC-------------
Confidence            457889999999999999998876 5 59999999999999999998877765 4688887765433             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                 + ++||+|+++.+++++     ..+++++.++|||||.+++.++..
T Consensus       153 -----------~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          153 -----------A-EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             -----------C-CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             -----------C-CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence                       3 679999998877664     568999999999999999965543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.55  E-value=9.2e-14  Score=115.73  Aligned_cols=98  Identities=17%  Similarity=0.217  Sum_probs=83.8

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++..+++   ++.+...|...+.               
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g-~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~---------------  180 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENSIAFLNETKEKENL---NISTALYDINAAN---------------  180 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCGGGCC---------------
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHcCC---ceEEEEecccccc---------------
Confidence            78899999999999999999886 4999999999999999999988775   6778877765442               


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              ..++||+|+++.++++     ...+++.+.++|||||.+++.
T Consensus       181 --------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          181 --------IQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             --------CCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --------ccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                    3678999999988875     346899999999999997774

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.55  E-value=8.2e-14  Score=116.07  Aligned_cols=108  Identities=21%  Similarity=0.211  Sum_probs=88.3

Q ss_pred             hhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           54 SLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        54 ~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....++. .++.+...|......          
T Consensus        60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~----------  128 (298)
T 1ri5_A           60 LYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHM----------  128 (298)
T ss_dssp             HHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCC----------
T ss_pred             HhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ccEEEEECCcccccc----------
Confidence            335788999999999999999888887679999999999999999998877654 478888887754421          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                 .+.++||+|+++..+++       ...+++++.++|||||.+++..
T Consensus       129 -----------~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          129 -----------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             -----------CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -----------CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                       13568999999877754       3468999999999999999864

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.55  E-value=2.3e-14  Score=119.39  Aligned_cols=124  Identities=13%  Similarity=0.064  Sum_probs=92.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.+++++...++.  ++.+...|...+....     .  
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~~~~-----~--  151 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL--NTIIINADMRKYKDYL-----L--  151 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCHHHHHHHH-----H--
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC--cEEEEeCChHhcchhh-----h--
Confidence            457899999999999999998874  3479999999999999999999988875  7888888765442100     0  


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---------------------HHHHHHHHHHcccCCeEEEEecC--C-CCcH
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---------------------LPQLADHIVSYAKPGAVVGISGI--L-SEQL  189 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~--~-~~~~  189 (222)
                                 ...++||+|++++|+..                     ...+++.+.++|||||.+++++.  . .++.
T Consensus       152 -----------~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene  220 (274)
T 3ajd_A          152 -----------KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENE  220 (274)
T ss_dssp             -----------HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSH
T ss_pred             -----------hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhH
Confidence                       01567999999987643                     25689999999999999988633  2 2444


Q ss_pred             HHHHHHHHhh
Q 047371          190 PRIINRYSEF  199 (222)
Q Consensus       190 ~~~~~~~~~~  199 (222)
                      ..+...++.+
T Consensus       221 ~~v~~~l~~~  230 (274)
T 3ajd_A          221 EVIKYILQKR  230 (274)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            4444444443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.55  E-value=7.9e-14  Score=109.65  Aligned_cols=138  Identities=15%  Similarity=0.043  Sum_probs=97.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++..+|||+|||+|.++..++.. +..+|+|+|+|+.+++.++.++..++.. .++.+  .+.....            
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~-~~v~~--~d~~~~~------------  111 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT-IKYRF--LNKESDV------------  111 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS-SEEEE--ECCHHHH------------
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ccEEE--ecccccC------------
Confidence            567889999999999999998765 5569999999999999999999988875 24555  4332211            


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHH---HHHHHHHcccCCeEEEEec--C--------CCCcHHHHHHHHHhhhh
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQ---LADHIVSYAKPGAVVGISG--I--------LSEQLPRIINRYSEFLE  201 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~---~l~~~~~~LkpgG~l~~~~--~--------~~~~~~~~~~~~~~~~~  201 (222)
                                 +.++||+|++...+|.+.+   .+..+.+.|+|||+++...  .        .......+.+.+.+...
T Consensus       112 -----------~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~  180 (200)
T 3fzg_A          112 -----------YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIK  180 (200)
T ss_dssp             -----------TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSC
T ss_pred             -----------CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcce
Confidence                       6788999999999998854   4668999999999998743  1        12333444444444444


Q ss_pred             cceecccCCceEeecccC
Q 047371          202 DILVSEKDDWRCVSGTKF  219 (222)
Q Consensus       202 ~~~~~~~~~w~~~~~~k~  219 (222)
                      .++....+.=.....+|+
T Consensus       181 ~~~~~~~~nEl~y~~~~~  198 (200)
T 3fzg_A          181 ILDSKVIGNELVYITSGF  198 (200)
T ss_dssp             EEEEEEETTEEEEEECCC
T ss_pred             eeeeeeeCceEEEEEecc
Confidence            444444443333344443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.54  E-value=3.7e-14  Score=114.64  Aligned_cols=122  Identities=13%  Similarity=0.204  Sum_probs=94.3

Q ss_pred             chhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           43 ATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        43 ~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      +.....+..+....+  ++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.|++++...++..+++++..+++
T Consensus        39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda  118 (221)
T 3dr5_A           39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP  118 (221)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence            333444444444322  2349999999999999999874  357999999999999999999998887534788988876


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ..+..       .+             +.++||+|+++.....+..+++.+.++|||||++++...
T Consensus       119 ~~~l~-------~~-------------~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          119 LDVMS-------RL-------------ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             HHHGG-------GS-------------CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             HHHHH-------Hh-------------cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            54311       00             357899999998888888999999999999999999544

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.54  E-value=2.6e-14  Score=116.45  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=81.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..+|.+|||+|||+|..+..+++....+++++|+++.+++.|+++....+.   ++.+...+.....       ..+   
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~---~~~~~~~~a~~~~-------~~~---  124 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH---KVIPLKGLWEDVA-------PTL---  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS---EEEEEESCHHHHG-------GGS---
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC---ceEEEeehHHhhc-------ccc---
Confidence            467899999999999999999887657899999999999999998876653   5677776654331       111   


Q ss_pred             cccccccCCCCCCCeeEEEeccccc-----c---HHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLN-----P---LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~-----~---~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                ++++||.|+.+....     +   ...+++++.|+|||||++.+.
T Consensus       125 ----------~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          125 ----------PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             ----------CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ----------cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence                      677899998765432     1   456899999999999999874

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.54  E-value=6.8e-14  Score=118.21  Aligned_cols=113  Identities=16%  Similarity=0.130  Sum_probs=78.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC----CceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP----KKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....+...    -++++...+...-..     ...  
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~-----~~~--  120 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTF-----VSS--  120 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSH-----HHH--
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchh-----hhh--
Confidence            478999999999986666666656799999999999999999876554320    024455554411000     000  


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             +....+.++||+|+|...+++      ...++++++++|||||+++++..
T Consensus       121 -------l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          121 -------VREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             -------HHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------hhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence                   000014678999999776643      46789999999999999998654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.54  E-value=9.6e-14  Score=118.59  Aligned_cols=143  Identities=17%  Similarity=0.221  Sum_probs=99.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CC-CEEEEEeCChHHHHHHHHHHHhcC-------CC--CCceeEEecCCcccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMFVGVDIDPQVIKSAHQNAALNN-------IG--PKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~-------~~--~~~v~~~~~~~~~~~~~  124 (222)
                      +.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.|++++...+       +.  ..++++...|...... 
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-  181 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-  181 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-
Confidence            568899999999999999999875 43 799999999999999999987532       21  1378888887754310 


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh---h-
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF---L-  200 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---~-  200 (222)
                            ++             +.++||+|+++.+..  ..+++++.++|||||.+++......+..++.+.+...   + 
T Consensus       182 ------~~-------------~~~~fD~V~~~~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~  240 (336)
T 2b25_A          182 ------DI-------------KSLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALS  240 (336)
T ss_dssp             -------------------------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEE
T ss_pred             ------cc-------------CCCCeeEEEECCCCH--HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcc
Confidence                  01             355799999987543  3478999999999999998766666666666666542   2 


Q ss_pred             -hcceecccCCceEeecccCC
Q 047371          201 -EDILVSEKDDWRCVSGTKFS  220 (222)
Q Consensus       201 -~~~~~~~~~~w~~~~~~k~~  220 (222)
                       ........+.|..+.++|+.
T Consensus       241 ~~~~~~~~~~~w~~~~~~~~~  261 (336)
T 2b25_A          241 CEKISEVIVRDWLVCLAKQKN  261 (336)
T ss_dssp             EEEEECCCCCCEEECC-----
T ss_pred             cceEEEecccceEEEeecccc
Confidence             12234456889888766543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.54  E-value=2.4e-13  Score=108.12  Aligned_cols=99  Identities=14%  Similarity=0.196  Sum_probs=82.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++    .+.  .++.+...|...+ .            
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~----~~~--~~~~~~~~d~~~~-~------------  103 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR----HGL--DNVEFRQQDLFDW-T------------  103 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG----GCC--TTEEEEECCTTSC-C------------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh----cCC--CCeEEEecccccC-C------------
Confidence            4567899999999999999998885 699999999999999987    333  3788888877544 1            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +.++||+|+++..+++.     ..+++++.++|||||.+++.+.
T Consensus       104 ----------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          104 ----------PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             ----------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                      67889999999888763     5679999999999999998644

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.53  E-value=9.3e-14  Score=119.59  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=86.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++. .++++...+...+..            
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------  129 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD-HVVTIIKGKVEEVEL------------  129 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEEESCTTTCCC------------
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCC-CcEEEEECcHHHccC------------
Confidence            457899999999999999999998878999999995 999999999988886 469999998876532            


Q ss_pred             cccccccCCCCCCCeeEEEeccccc------cHHHHHHHHHHcccCCeEEEE
Q 047371          136 LSSHEIRGISETEEYDVVIANILLN------PLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~------~~~~~l~~~~~~LkpgG~l~~  181 (222)
                                +.++||+|+++.+.+      ....++..+.++|||||.++.
T Consensus       130 ----------~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          130 ----------PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             ----------SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ----------CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence                      567899999976432      256788999999999999874

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.53  E-value=2.1e-13  Score=110.34  Aligned_cols=140  Identities=13%  Similarity=0.069  Sum_probs=95.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++..+    .++.+...|......     ...   
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~-----~~~---  139 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQE-----YAN---  139 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGG-----GTT---
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCccc-----ccc---
Confidence            457889999999999999999876 5579999999999999999887544    378888887754200     000   


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEEe----cCCCC------cHHHHHHHHHh-hhhc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGIS----GILSE------QLPRIINRYSE-FLED  202 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~----~~~~~------~~~~~~~~~~~-~~~~  202 (222)
                                 ..++||+|+.+.+-.. ...+++++.+.|||||.+++.    +....      ..+++. .+.+ +|..
T Consensus       140 -----------~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~  207 (230)
T 1fbn_A          140 -----------IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKI  207 (230)
T ss_dssp             -----------TSCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEE
T ss_pred             -----------cCccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEE
Confidence                       1267999997643322 356799999999999999985    11111      114444 4444 3655


Q ss_pred             ceecccCC----ceEeecccC
Q 047371          203 ILVSEKDD----WRCVSGTKF  219 (222)
Q Consensus       203 ~~~~~~~~----w~~~~~~k~  219 (222)
                      ++......    +..+.++|+
T Consensus       208 ~~~~~~~~~~~~~~~v~~~k~  228 (230)
T 1fbn_A          208 VDEVDIEPFEKDHVMFVGIWE  228 (230)
T ss_dssp             EEEEECTTTSTTEEEEEEEEC
T ss_pred             EEEEccCCCccceEEEEEEeC
Confidence            55443333    455666654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.53  E-value=2e-13  Score=111.15  Aligned_cols=104  Identities=16%  Similarity=0.147  Sum_probs=81.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++||++|||+|||+|.++..+++.  +.++|+|+|+++.+++.+++++...+    ++..+..+......      .+. 
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V~~d~~~p~~------~~~-  143 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPILGDARFPEK------YRH-  143 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEEESCTTCGGG------GTT-
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEEEEeccCccc------ccc-
Confidence            689999999999999999999985  56899999999999999988765432    67777666544311      000 


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                  ..+.+|+|+++.+... ...++.++.+.|||||.++++
T Consensus       144 ------------~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          144 ------------LVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             ------------TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------------ccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence                        4567999998776654 345789999999999999985

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.53  E-value=6.4e-14  Score=114.69  Aligned_cols=101  Identities=20%  Similarity=0.323  Sum_probs=84.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++ ....  .++.+...+...+..            
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~~--~~~~~~~~d~~~~~~------------  100 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-AGVD--RKVQVVQADARAIPL------------  100 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-TTSC--TTEEEEESCTTSCCS------------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-hccC--CceEEEEcccccCCC------------
Confidence            4678899999999999999998874 68999999999999999887 2222  378888888765432            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~  182 (222)
                                ++++||+|+++..+++.   ..+++++.++|||||.+++.
T Consensus       101 ----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          101 ----------PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ----------CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----------CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence                      56789999999888764   67899999999999999986

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.53  E-value=7.7e-14  Score=113.77  Aligned_cols=122  Identities=13%  Similarity=0.117  Sum_probs=88.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh------cCCCCCceeEEecCCcc-ccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL------NNIGPKKIKLHLVPDRT-FTASMNE  127 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~v~~~~~~~~~-~~~~~~~  127 (222)
                      ..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..      .++  .++.+...|+.. +.     
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~--~nv~~~~~d~~~~l~-----  116 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF--QNIACLRSNAMKHLP-----  116 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC--TTEEEEECCTTTCHH-----
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC--CeEEEEECcHHHhhh-----
Confidence            346778999999999999998875 567999999999999999987653      233  378898888754 21     


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccccH-----------HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----------PQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                                     .+.+.++||.|+++.+-.+.           ..+++.+.++|||||.+++..........+.+.+
T Consensus       117 ---------------~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l  181 (235)
T 3ckk_A          117 ---------------NFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHF  181 (235)
T ss_dssp             ---------------HHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHH
T ss_pred             ---------------hhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHH
Confidence                           00156789999987654321           4689999999999999998654444444445555


Q ss_pred             Hhh
Q 047371          197 SEF  199 (222)
Q Consensus       197 ~~~  199 (222)
                      ...
T Consensus       182 ~~~  184 (235)
T 3ckk_A          182 EEH  184 (235)
T ss_dssp             HTS
T ss_pred             HHC
Confidence            443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.53  E-value=7.3e-14  Score=110.65  Aligned_cols=104  Identities=19%  Similarity=0.213  Sum_probs=81.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|..+..++.....+++|+|+++.+++.|++++...+.   ++.+...+...+..            
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~------------   85 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF---KLNISKGDIRKLPF------------   85 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC---CCCEEECCTTSCCS------------
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEECchhhCCC------------
Confidence            456889999999999875443333346999999999999999998876552   57777777755432            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +.++||+|+++.++++.     ..+++++.++|||||.+++..+
T Consensus        86 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           86 ----------KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             ----------CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                      56789999998776654     4579999999999999998643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.53  E-value=6e-14  Score=116.67  Aligned_cols=122  Identities=24%  Similarity=0.264  Sum_probs=96.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++..+ +..  ++.+...|.... .         
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~--~v~~~~~d~~~~-~---------  175 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG--NVRTSRSDIADF-I---------  175 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT--TEEEECSCTTTC-C---------
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCC--cEEEEECchhcc-C---------
Confidence            457889999999999999998875  4579999999999999999999877 643  788888776442 1         


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                                   +.++||+|+++.+-  ...+++.+.+.|||||.+++.+....+..++.+.+.+. |..++
T Consensus       176 -------------~~~~fD~Vi~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~  233 (275)
T 1yb2_A          176 -------------SDQMYDAVIADIPD--PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE  233 (275)
T ss_dssp             -------------CSCCEEEEEECCSC--GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred             -------------cCCCccEEEEcCcC--HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEE
Confidence                         45689999997652  45789999999999999999876665666777766653 44333

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.53  E-value=8.1e-14  Score=110.74  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=86.6

Q ss_pred             HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      ....++.....++.+|||+|||+|.++..+   +..+++|+|+++.+++.|+++.       .++.+...+...+..   
T Consensus        25 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~---   91 (211)
T 2gs9_A           25 EEERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPF---   91 (211)
T ss_dssp             HHHHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCS---
T ss_pred             HHHHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCC---
Confidence            344566666668899999999999998877   4448999999999999998875       256677777655432   


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCC
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSE  187 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (222)
                                         +.++||+|+++..+++   ...+++++.++|||||.+++......
T Consensus        92 -------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A           92 -------------------PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             -------------------CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             -------------------CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence                               5678999999888776   46789999999999999999765443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.53  E-value=1.3e-13  Score=112.79  Aligned_cols=123  Identities=17%  Similarity=0.187  Sum_probs=97.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..+ +.  .++.+...|......         
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~~~~---------  162 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFHLGKLEEAEL---------  162 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC--CCEEEEESCGGGCCC---------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCEEEEECchhhcCC---------
Confidence            567899999999999999998876 4 579999999999999999998876 63  478888877654311         


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                                   +.++||+|+++++-  ...+++++.++|+|||.+++......+..++.+.+.+. |..++
T Consensus       163 -------------~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~  220 (258)
T 2pwy_A          163 -------------EEAAYDGVALDLME--PWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLER  220 (258)
T ss_dssp             -------------CTTCEEEEEEESSC--GGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEE
T ss_pred             -------------CCCCcCEEEECCcC--HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEE
Confidence                         45689999997653  35789999999999999999866666667777777654 44333

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.52  E-value=1.1e-13  Score=120.61  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=87.7

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHH-------HhcCCCCCceeEEecCC
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNA-------ALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~-------~~~~~~~~~v~~~~~~~  118 (222)
                      +..++... ++++.+|||+|||+|.+++.++.. +..+++|+|+++.+++.|+++.       ...++...++.+..+|+
T Consensus       162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~  241 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  241 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence            34444433 578999999999999999988864 5557999999999999998754       34565334899999998


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecC
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ....+.     .               ....||+|++|.++..  ....+.++.+.|||||.+++...
T Consensus       242 ~~lp~~-----d---------------~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          242 LSEEWR-----E---------------RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             TSHHHH-----H---------------HHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             cCCccc-----c---------------ccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeec
Confidence            665320     0               0136999999887643  44567889999999999999644

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.52  E-value=1.1e-13  Score=111.87  Aligned_cols=107  Identities=12%  Similarity=0.048  Sum_probs=84.6

Q ss_pred             HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .+.+.+... .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++...      ++.+...+...+.    
T Consensus        32 ~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~~~~~----   99 (250)
T 2p7i_A           32 FMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKD------GITYIHSRFEDAQ----   99 (250)
T ss_dssp             HHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSCS------CEEEEESCGGGCC----
T ss_pred             HHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhhhC------CeEEEEccHHHcC----
Confidence            344444332 367899999999999999998875 4899999999999999987532      5677777664431    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHH-HcccCCeEEEEecC
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIV-SYAKPGAVVGISGI  184 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~-~~LkpgG~l~~~~~  184 (222)
                                         ++++||+|++...+++   ...+++++. ++|||||.+++...
T Consensus       100 -------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          100 -------------------LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             -------------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -------------------cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence                               5678999999888876   456899999 99999999999654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.52  E-value=1.6e-13  Score=111.06  Aligned_cols=109  Identities=16%  Similarity=0.236  Sum_probs=89.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ..++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...++. .++.+...+......        .  
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--------~--  120 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE-SRIELLFGDALQLGE--------K--  120 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCGGGSHH--------H--
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHHHH--------h--
Confidence            347889999999999999998876 4579999999999999999999888875 368888777644210        0  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ....++||+|+++.+...+..+++.+.++|+|||.+++..+
T Consensus       121 ---------~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          121 ---------LELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             ---------HTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             ---------cccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence                     00146899999999888888999999999999999999754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=2.2e-13  Score=113.10  Aligned_cols=100  Identities=24%  Similarity=0.263  Sum_probs=82.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|+++.       .++.+...+...+.             
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~-------------  113 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFR-------------  113 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCC-------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCC-------------
Confidence            357889999999999999999884 579999999999999998764       25667777775542             


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                ..++||+|+++.++++   ...+++++.++|||||.+++.....
T Consensus       114 ----------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          114 ----------VDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             ----------CSSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             ----------cCCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence                      3468999999988876   4578999999999999999865443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.52  E-value=2.4e-13  Score=110.48  Aligned_cols=118  Identities=18%  Similarity=0.233  Sum_probs=93.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++....++. .++.+...+......            
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------  154 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG-KNVKFFNVDFKDAEV------------  154 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC-TTEEEECSCTTTSCC------------
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-CcEEEEEcChhhccc------------
Confidence            357889999999999999999888 679999999999999999999887764 377787776644310            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                +.++||+|+++++  ....+++++.++|+|||.+++......+..++.+.+...
T Consensus       155 ----------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          155 ----------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY  206 (248)
T ss_dssp             ----------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred             ----------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence                      3457999999875  245788999999999999999766555666666665543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.51  E-value=2.2e-13  Score=107.46  Aligned_cols=101  Identities=21%  Similarity=0.193  Sum_probs=81.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++ +|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+.   ++.+...+...+..            
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~------------   90 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGV---KITTVQSNLADFDI------------   90 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTC---CEEEECCBTTTBSC------------
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcChhhcCC------------
Confidence            4567 99999999999999998875 5999999999999999999876654   57777777654422            


Q ss_pred             cccccccCCCCCCCeeEEEeccccc---cHHHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIANILLN---PLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                +.++||+|+++....   ....+++.+.++|||||.+++..
T Consensus        91 ----------~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A           91 ----------VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             ----------CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             ----------CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                      467899999964332   24568999999999999999964

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.51  E-value=7.7e-14  Score=117.07  Aligned_cols=108  Identities=27%  Similarity=0.329  Sum_probs=78.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCC-----------------------------
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIG-----------------------------  107 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----------------------------  107 (222)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            5889999999999999998875 5679999999999999999987654321                             


Q ss_pred             ---------------------------CCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc
Q 047371          108 ---------------------------PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN  160 (222)
Q Consensus       108 ---------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~  160 (222)
                                                 ..++.+...|......    ...+             ...++||+|+|..+++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~----~~~~-------------~~~~~fD~I~~~~vl~  188 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD----DLVE-------------AQTPEYDVVLCLSLTK  188 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSH----HHHT-------------TCCCCEEEEEEESCHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCcc----cccc-------------ccCCCcCEEEEChHHH
Confidence                                       0256666665532210    0000             1467899999988774


Q ss_pred             c---------HHHHHHHHHHcccCCeEEEEe
Q 047371          161 P---------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       161 ~---------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +         ...+++++.++|||||++++.
T Consensus       189 ~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~  219 (292)
T 3g07_A          189 WVHLNWGDEGLKRMFRRIYRHLRPGGILVLE  219 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhhhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            3         345899999999999999995

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.51  E-value=1.3e-13  Score=115.24  Aligned_cols=141  Identities=15%  Similarity=0.168  Sum_probs=101.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc--CC-------CCCceeEEecCCcccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN--NI-------GPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~-------~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .+++.+|||+|||+|.++..+++.+..+++++|+++.+++.|++++ ..  ++       ...++++...|+..+..   
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~---  148 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK---  148 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH---
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc---
Confidence            3567899999999999999998776679999999999999999987 33  32       23578888877643310   


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEec-CC---CCcHHHHHHH
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISG-IL---SEQLPRIINR  195 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~-~~---~~~~~~~~~~  195 (222)
                                         ..++||+|+++++...       ..++++.+.+.|+|||.+++.. ..   ......+.+.
T Consensus       149 -------------------~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~  209 (281)
T 1mjf_A          149 -------------------NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKE  209 (281)
T ss_dssp             -------------------HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHH
T ss_pred             -------------------ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHH
Confidence                               1457999999876421       3678999999999999999852 12   2233455555


Q ss_pred             HHhhhhcceecc------cCCceEeecccC
Q 047371          196 YSEFLEDILVSE------KDDWRCVSGTKF  219 (222)
Q Consensus       196 ~~~~~~~~~~~~------~~~w~~~~~~k~  219 (222)
                      +...|.......      .+.|..+.++|.
T Consensus       210 l~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          210 MKKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            555554443321      478887777664

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.51  E-value=1.8e-13  Score=113.50  Aligned_cols=118  Identities=18%  Similarity=0.196  Sum_probs=94.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhc-C-CCCCceeEEecCCccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALN-N-IGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      +.++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++... + +. .++.+...|......        
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~-~~v~~~~~d~~~~~~--------  167 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-DNWRLVVSDLADSEL--------  167 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC-TTEEEECSCGGGCCC--------
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC-CcEEEEECchHhcCC--------
Confidence            567899999999999999998874  3579999999999999999998776 4 22 378888777654321        


Q ss_pred             chhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                                    +.++||+|+++.+  ....+++++.++|+|||.+++......+..++.+.+..
T Consensus       168 --------------~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~  218 (280)
T 1i9g_A          168 --------------PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA  218 (280)
T ss_dssp             --------------CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             --------------CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence                          4568999999765  24578999999999999999987666677777777765

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.51  E-value=1.7e-13  Score=115.80  Aligned_cols=113  Identities=15%  Similarity=0.024  Sum_probs=85.1

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCC-----CCCceeEEecCCccccccccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI-----GPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      +++.+|||+|||+|..+..+++.+..+++|+|+++.+++.|+++....+.     ...++.+...|......     ..+
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~  107 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELL-----IDK  107 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCS-----TTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccch-----hhh
Confidence            36889999999999999988877667999999999999999998765421     11367888887765420     000


Q ss_pred             chhccccccccCCC-CCCCeeEEEeccccccH-------HHHHHHHHHcccCCeEEEEecCCC
Q 047371          132 VVEYLSSHEIRGIS-ETEEYDVVIANILLNPL-------PQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       132 ~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                  +. +.++||+|+++..+++.       ..++.++.++|||||.++++....
T Consensus       108 ------------~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          108 ------------FRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             ------------CSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             ------------cccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence                        00 24589999999888654       468999999999999999975543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.51  E-value=2.5e-13  Score=116.55  Aligned_cols=101  Identities=29%  Similarity=0.330  Sum_probs=84.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++. .++++...+...+..            
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~------------  127 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE-DTITLIKGKIEEVHL------------  127 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCC------------
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC-CcEEEEEeeHHHhcC------------
Confidence            457889999999999999999988767999999997 999999999888875 488999888765532            


Q ss_pred             cccccccCCCCCCCeeEEEeccc---cc---cHHHHHHHHHHcccCCeEEE
Q 047371          136 LSSHEIRGISETEEYDVVIANIL---LN---PLPQLADHIVSYAKPGAVVG  180 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~---~~---~~~~~l~~~~~~LkpgG~l~  180 (222)
                                +.++||+|+++..   +.   .+..++..+.+.|||||.++
T Consensus       128 ----------~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          128 ----------PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ----------SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence                      4578999999873   21   14568899999999999987

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.51  E-value=3e-13  Score=110.56  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             HHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           46 KLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        46 ~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      .....++... ..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.++++.       .++.+...|...+. 
T Consensus        20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~-   91 (259)
T 2p35_A           20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------PNTNFGKADLATWK-   91 (259)
T ss_dssp             HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------TTSEEEECCTTTCC-
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------CCcEEEECChhhcC-
Confidence            3344455444 456789999999999999988875 4578999999999999998871       26778887765441 


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecC
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                            +.++||+|+++.++++.   ..+++++.++|||||.+++...
T Consensus        92 ----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           92 ----------------------PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             ----------------------CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ----------------------ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence                                  45689999999888764   5689999999999999999753

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.51  E-value=2.1e-13  Score=113.39  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=96.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++...++. .++.+...|.... .          
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~----------  177 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISEG-F----------  177 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGGC-C----------
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHc-c----------
Confidence            457889999999999999998876 3 579999999999999999999887763 3677877765432 1          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                                  +.++||+|+++++.  ...+++.+.++|+|||.+++......+..++.+.+.+. |..++
T Consensus       178 ------------~~~~~D~V~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~  235 (277)
T 1o54_A          178 ------------DEKDVDALFLDVPD--PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIE  235 (277)
T ss_dssp             ------------SCCSEEEEEECCSC--GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEE
T ss_pred             ------------cCCccCEEEECCcC--HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeE
Confidence                        45689999998754  35788999999999999999866556667777776653 44333

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.51  E-value=1.6e-13  Score=111.43  Aligned_cols=99  Identities=21%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|+++          +.+...+...+.       .++   
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~-------~~~---   97 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDMIKFCEGK----------FNVVKSDAIEYL-------KSL---   97 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHT-CCEEEECSCHHHHHHHHTT----------SEEECSCHHHHH-------HTS---
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCC-CcEEEEECCHHHHHHHHhh----------cceeeccHHHHh-------hhc---
Confidence            4578999999999999999998875 5799999999999999875          335555443320       011   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                ++++||+|+++..++++     ..+++++.++|||||.+++....
T Consensus        98 ----------~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A           98 ----------PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             ----------CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             ----------CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence                      56889999998888763     57899999999999999996543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.51  E-value=1.6e-13  Score=113.58  Aligned_cols=113  Identities=16%  Similarity=0.080  Sum_probs=81.9

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc-cccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT-FTAS  124 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~-~~~~  124 (222)
                      ....++... ++++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++....     +.....+... ..  
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~~-----v~~~~~~~~~~~~--  104 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADRC-----VTIDLLDITAEIP--  104 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSSC-----CEEEECCTTSCCC--
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcc-----ceeeeeecccccc--
Confidence            334444433 5678999999999999999999886 689999999999999999875431     2222222211 00  


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCCC
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILSE  187 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (222)
                                         ....++||+|+++.++++     ....+..+.++| |||.+++++....
T Consensus       105 -------------------~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~  152 (261)
T 3iv6_A          105 -------------------KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGF  152 (261)
T ss_dssp             -------------------GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred             -------------------cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence                               002568999999988765     345789999999 9999999865443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.50  E-value=2.4e-13  Score=115.42  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=103.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh--cC-CCCCceeEEecCCccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL--NN-IGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~-~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .+ +...++++...|+..+..        
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~--------  146 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE--------  146 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH--------
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH--------
Confidence            356789999999999999999876 467999999999999999998754  22 223478888887654310        


Q ss_pred             chhccccccccCCCCCCCeeEEEecccccc----------HHHHHHHHHHcccCCeEEEEecC-----CCCcHHHHHHHH
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNP----------LPQLADHIVSYAKPGAVVGISGI-----LSEQLPRIINRY  196 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~  196 (222)
                      .             ..++||+|+++.+.+.          ...+++.+.+.|||||.+++...     .......+.+.+
T Consensus       147 ~-------------~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l  213 (314)
T 1uir_A          147 R-------------TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTV  213 (314)
T ss_dssp             H-------------CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHH
T ss_pred             h-------------cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHH
Confidence            0             3568999999876543          46889999999999999998521     124456666777


Q ss_pred             Hhhhhcceec------ccCCceEeecccC
Q 047371          197 SEFLEDILVS------EKDDWRCVSGTKF  219 (222)
Q Consensus       197 ~~~~~~~~~~------~~~~w~~~~~~k~  219 (222)
                      ...|......      ..+.|..+.++|.
T Consensus       214 ~~~F~~v~~~~~~vP~~~g~~~~~~as~~  242 (314)
T 1uir_A          214 REAFRYVRSYKNHIPGFFLNFGFLLASDA  242 (314)
T ss_dssp             HTTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             HHHCCceEEEEEecCCCCCeEEEEEEECC
Confidence            7666544322      2457876666653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.50  E-value=9.2e-14  Score=115.91  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=81.1

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC--CceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP--KKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++....+...  .++.+...+...+..           
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------  123 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-----------  123 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-----------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc-----------
Confidence            467899999999999999999886 499999999999999998764433221  245566665544320           


Q ss_pred             ccccccccCCCCCCCeeEEEec-ccccc----------HHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIAN-ILLNP----------LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~-~~~~~----------~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              .+.+.++||+|+++ ..+++          ...+++++.++|||||++++..
T Consensus       124 --------~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          124 --------DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             --------HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --------ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence                    00156789999997 56644          4568999999999999999864

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.50  E-value=3.6e-13  Score=107.29  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=86.4

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++++...+......           
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-----------  122 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDPLGIAA-----------  122 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG-GGEEEEESCHHHHHT-----------
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-ceEEEEEecHHHHhc-----------
Confidence            36789999999999999999875 3 579999999999999999999887764 468888877643210           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              .  ..+ ||+|+++.....+..+++.+.++|||||++++...
T Consensus       123 --------~--~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          123 --------G--QRD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             --------T--CCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             --------c--CCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence                    0  235 99999988777788999999999999999998543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.50  E-value=1.5e-13  Score=111.27  Aligned_cols=99  Identities=19%  Similarity=0.299  Sum_probs=81.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++...     .++.+...+...+..              
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~--------------  103 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHL--------------  103 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCC--------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccC--------------
Confidence            6889999999999999999888655999999999999999887542     257777777654421              


Q ss_pred             cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              +.++||+|+++.++++   ...+++++.++|||||.+++..
T Consensus       104 --------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          104 --------PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             --------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence                    5678999999888766   4678999999999999999853

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.50  E-value=3.3e-13  Score=114.07  Aligned_cols=144  Identities=16%  Similarity=0.158  Sum_probs=102.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .+....++++...|...+..       . 
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------~-  164 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR-------Q-  164 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH-------S-
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH-------h-
Confidence            356789999999999999999876 457999999999999999998742  12223478888887654421       0 


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccH-------HHHHHHHHHcccCCeEEEEecCC----CCcHHHHHHHHHhh-h
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPL-------PQLADHIVSYAKPGAVVGISGIL----SEQLPRIINRYSEF-L  200 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~-~  200 (222)
                                  ...++||+|+++.+....       ..+++.+.++|||||.+++....    .....++.+.+.+. |
T Consensus       165 ------------~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF  232 (304)
T 3bwc_A          165 ------------TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGF  232 (304)
T ss_dssp             ------------SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTC
T ss_pred             ------------ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCC
Confidence                        025689999998765331       57899999999999999985322    13445666677666 6


Q ss_pred             hcceec-------ccCCceEeecccC
Q 047371          201 EDILVS-------EKDDWRCVSGTKF  219 (222)
Q Consensus       201 ~~~~~~-------~~~~w~~~~~~k~  219 (222)
                      ..+...       ..+.|.-+.++|.
T Consensus       233 ~~v~~~~~~vP~yp~g~w~f~~as~~  258 (304)
T 3bwc_A          233 ASVQYALMHVPTYPCGSIGTLVCSKK  258 (304)
T ss_dssp             SEEEEEECCCTTSTTSCCEEEEEESS
T ss_pred             CcEEEEEeecccccCcceEEEEEeCC
Confidence            554332       3578877776664

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.50  E-value=3.3e-13  Score=112.58  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=85.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.|++++...+.   ++.+...|...+.           
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~-----------   85 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIE-----------   85 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS---EEEEEESCTTTCC-----------
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcchhhcC-----------
Confidence            356889999999999999998875 3 37999999999999999999876553   7888888876542           


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  ..++||+|+++..+++   ...+++++.++|||||.+++...
T Consensus        86 ------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  127 (284)
T 3gu3_A           86 ------------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  127 (284)
T ss_dssp             ------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ------------cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEec
Confidence                        2468999999888776   46789999999999999998643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.50  E-value=2.2e-13  Score=110.19  Aligned_cols=107  Identities=19%  Similarity=0.251  Sum_probs=85.4

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ....+...++++.+|||+|||+|.++..+++.  .+++|+|+++.+++.|+++....+   .++.+...+...+.     
T Consensus        23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~-----   92 (243)
T 3d2l_A           23 WVAWVLEQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDMRELE-----   92 (243)
T ss_dssp             HHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCGGGCC-----
T ss_pred             HHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcChhhcC-----
Confidence            44455566778899999999999999988877  699999999999999999887655   25777777765432     


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecc-ccccH------HHHHHHHHHcccCCeEEEEe
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANI-LLNPL------PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~-~~~~~------~~~l~~~~~~LkpgG~l~~~  182 (222)
                                        ..++||+|+++. +++++      ..+++++.++|||||.+++.
T Consensus        93 ------------------~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           93 ------------------LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             ------------------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------------------CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                              236899999975 55543      45799999999999999984

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.50  E-value=1.3e-13  Score=111.29  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=91.5

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc-ccc
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR-TFT  122 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~-~~~  122 (222)
                      ...++..++....+++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++.       .++.+...|.. .++
T Consensus        34 ~~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~  105 (226)
T 3m33_A           34 PELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANA-------PHADVYEWNGKGELP  105 (226)
T ss_dssp             TTHHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHC-------TTSEEEECCSCSSCC
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhC-------CCceEEEcchhhccC
Confidence            3445555555556789999999999999999999885 69999999999999999871       26778888773 332


Q ss_pred             cccccccccchhccccccccCCCC-CCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISE-TEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                      .                      + .++||+|+++.   ....+++++.++|||||.++.. .......++.+.+..
T Consensus       106 ~----------------------~~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~l~~  156 (226)
T 3m33_A          106 A----------------------GLGAPFGLIVSRR---GPTSVILRLPELAAPDAHFLYV-GPRLNVPEVPERLAA  156 (226)
T ss_dssp             T----------------------TCCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEEEE-ESSSCCTHHHHHHHH
T ss_pred             C----------------------cCCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEEEe-CCcCCHHHHHHHHHH
Confidence            1                      3 67899999983   3557888999999999999843 223344566666655

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.50  E-value=1.5e-13  Score=112.56  Aligned_cols=132  Identities=15%  Similarity=0.135  Sum_probs=93.0

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC---------------------------C
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP---------------------------K  109 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------------------------~  109 (222)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|++++...+...                           .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            3567999999999999998887765689999999999999998875432100                           0


Q ss_pred             ce-eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc----c---HHHHHHHHHHcccCCeEEEE
Q 047371          110 KI-KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN----P---LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       110 ~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~----~---~~~~l~~~~~~LkpgG~l~~  181 (222)
                      ++ .+...+......     ..+.             ..++||+|+++..++    +   ...+++++.++|||||.+++
T Consensus       135 ~v~~~~~~d~~~~~~-----~~~~-------------~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~  196 (265)
T 2i62_A          135 AIKQVLKCDVTQSQP-----LGGV-------------SLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM  196 (265)
T ss_dssp             HEEEEEECCTTSSST-----TTTC-------------CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hheeEEEeeeccCCC-----CCcc-------------ccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Confidence            25 676666644310     0000             227899999988877    3   55689999999999999998


Q ss_pred             ecCC---------------CCcHHHHHHHHHhh-hhcceec
Q 047371          182 SGIL---------------SEQLPRIINRYSEF-LEDILVS  206 (222)
Q Consensus       182 ~~~~---------------~~~~~~~~~~~~~~-~~~~~~~  206 (222)
                      ....               .-...++.+.+... |..+...
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  237 (265)
T 2i62_A          197 VDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE  237 (265)
T ss_dssp             EEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             EecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEE
Confidence            6432               12445777777664 6555543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.50  E-value=3.2e-13  Score=110.43  Aligned_cols=109  Identities=17%  Similarity=0.085  Sum_probs=83.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhc--------CCCCCceeEEecCCcccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALN--------NIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .+++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|++++..+        ++.  ++.+...|+....    
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--nv~~~~~D~~~~l----  120 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ--NINVLRGNAMKFL----  120 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT--TEEEEECCTTSCG----
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC--cEEEEeccHHHHH----
Confidence            3467899999999999999998864 468999999999999999988765        553  7888888875421    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEeccccccH-----------HHHHHHHHHcccCCeEEEEecCC
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----------PQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                     ....+.+.+|.|+++.+-.+.           ..++..+.++|+|||.+++.+..
T Consensus       121 ---------------~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          121 ---------------PNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             ---------------GGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             ---------------HHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence                           001146789999876443321           47999999999999999985433

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.49  E-value=3.6e-13  Score=114.71  Aligned_cols=142  Identities=17%  Similarity=0.175  Sum_probs=100.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .++...++++...|...+..        .
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~--------~  185 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE--------N  185 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH--------H
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh--------h
Confidence            346789999999999999999876 567999999999999999998764  23323478888887644310        0


Q ss_pred             hhccccccccCCCCCCCeeEEEeccc--ccc----H-HHHHHHHHHcccCCeEEEEecC-CC---CcHHHHHHHHHhhhh
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANIL--LNP----L-PQLADHIVSYAKPGAVVGISGI-LS---EQLPRIINRYSEFLE  201 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~--~~~----~-~~~l~~~~~~LkpgG~l~~~~~-~~---~~~~~~~~~~~~~~~  201 (222)
                                   ..++||+|+++++  ...    + .++++.+.+.|||||.+++... ..   ....++.+.+.+.|.
T Consensus       186 -------------~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  252 (321)
T 2pt6_A          186 -------------VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFK  252 (321)
T ss_dssp             -------------CCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCS
T ss_pred             -------------cCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCC
Confidence                         3567999999873  211    1 6889999999999999998522 21   234555666666555


Q ss_pred             ccee-------cccCCceEeeccc
Q 047371          202 DILV-------SEKDDWRCVSGTK  218 (222)
Q Consensus       202 ~~~~-------~~~~~w~~~~~~k  218 (222)
                      ....       ...|.|.-+.++|
T Consensus       253 ~v~~~~~~vp~~~~g~w~f~~as~  276 (321)
T 2pt6_A          253 KVEYANISIPTYPCGCIGILCCSK  276 (321)
T ss_dssp             EEEEEEEECTTSGGGEEEEEEEES
T ss_pred             CeEEEEEEeccccCceEEEEEeeC
Confidence            4433       2346787666554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.49  E-value=2.5e-13  Score=118.06  Aligned_cols=101  Identities=24%  Similarity=0.261  Sum_probs=85.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.+++.+++.+..+|+|+|++ .+++.|++++..+++. .++++...+...+.             
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-------------  125 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD-HIVEVIEGSVEDIS-------------  125 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT-TTEEEEESCGGGCC-------------
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC-CeEEEEECchhhcC-------------
Confidence            35688999999999999999999877799999999 9999999999988886 47899988876653             


Q ss_pred             cccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEE
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~  181 (222)
                                ..++||+|+++.+.+.      ...++..+.++|||||.+++
T Consensus       126 ----------~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          126 ----------LPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             ----------CSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             ----------cCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence                      2378999999774432      45689999999999999987

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.49  E-value=2e-13  Score=104.54  Aligned_cols=123  Identities=14%  Similarity=0.159  Sum_probs=90.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|.++..+++. + ..+++|+|+++ +++.            .++.+...+....... ....... 
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~-~~~~~~~-   84 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVM-KALLERV-   84 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHH-HHHHHHH-
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhh-hhhhccC-
Confidence            467889999999999999998876 4 47999999999 6421            2677777776543200 0000001 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccH--------------HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPL--------------PQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~--------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                  +.++||+|+++.++++.              ..+++.+.++|+|||.+++..........+.+.+...
T Consensus        85 ------------~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  152 (180)
T 1ej0_A           85 ------------GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL  152 (180)
T ss_dssp             ------------TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH
T ss_pred             ------------CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh
Confidence                        56789999998876531              5789999999999999999877777888888888777


Q ss_pred             hhccee
Q 047371          200 LEDILV  205 (222)
Q Consensus       200 ~~~~~~  205 (222)
                      +..+..
T Consensus       153 ~~~~~~  158 (180)
T 1ej0_A          153 FTKVKV  158 (180)
T ss_dssp             EEEEEE
T ss_pred             hhhEEe
Confidence            655543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.49  E-value=2.1e-13  Score=110.91  Aligned_cols=109  Identities=9%  Similarity=0.113  Sum_probs=84.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++..     ..++.+...|...+...     ...   
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~-----~~~---  119 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT-----AANISYRLLDGLVPEQA-----AQI---  119 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC-----CTTEEEEECCTTCHHHH-----HHH---
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc-----ccCceEEECcccccccc-----ccc---
Confidence            56788999999999999999998864 89999999999999998762     13788888887654210     000   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILSE  187 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~~  187 (222)
                               .....||+|+++..++++     ..+++++.++|||||++++.++...
T Consensus       120 ---------~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          120 ---------HSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             ---------HHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             ---------ccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence                     011348999998877764     4789999999999999888765443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.49  E-value=4.2e-13  Score=114.54  Aligned_cols=102  Identities=25%  Similarity=0.319  Sum_probs=84.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|++++..+++. .++++...+...+..            
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~------------  101 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS-DKITLLRGKLEDVHL------------  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT-TTEEEEESCTTTSCC------------
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC-CCEEEEECchhhccC------------
Confidence            35789999999999999999998877799999999 5999999999888875 478898888765532            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEE
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~  181 (222)
                                +.++||+|+++.+.+.      +..++..+.++|||||.++.
T Consensus       102 ----------~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          102 ----------PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ----------SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ----------CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence                      4578999999865432      46788999999999999973

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.49  E-value=8.7e-13  Score=111.86  Aligned_cols=159  Identities=11%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             ceeEEeCCCccccc-------CCcchhHHHHHHHHh---hhcCCC--cEEEEccCCCHHHHHHHH-hCCCEEEEEeCChH
Q 047371           26 ATNIILNPGLAFGT-------GEHATTKLCLLLLQS---LIKGGE--LFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQ   92 (222)
Q Consensus        26 ~~~~~~~~~~~f~~-------~~~~~~~~~~~~l~~---~~~~~~--~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~   92 (222)
                      .+.+.++-......       ..+.+.+.+...+..   ..+.++  +|||+|||+|.++..+++ ++..+++++|+++.
T Consensus        45 g~~L~lDG~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~  124 (317)
T 3gjy_A           45 GWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAE  124 (317)
T ss_dssp             EEEEEETTEEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHH
T ss_pred             eEEEEECCEeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHH
Confidence            45666665544432       244566666665544   234444  999999999999999988 56679999999999


Q ss_pred             HHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHH
Q 047371           93 VIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQL  165 (222)
Q Consensus        93 ~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~  165 (222)
                      +++.|++++....  ..++++...|+..+..       ..             +.++||+|+++.....       ..++
T Consensus       125 vi~~Ar~~~~~~~--~~rv~v~~~Da~~~l~-------~~-------------~~~~fDvIi~D~~~~~~~~~~L~t~ef  182 (317)
T 3gjy_A          125 LARLSREWFDIPR--APRVKIRVDDARMVAE-------SF-------------TPASRDVIIRDVFAGAITPQNFTTVEF  182 (317)
T ss_dssp             HHHHHHHHSCCCC--TTTEEEEESCHHHHHH-------TC-------------CTTCEEEEEECCSTTSCCCGGGSBHHH
T ss_pred             HHHHHHHhccccC--CCceEEEECcHHHHHh-------hc-------------cCCCCCEEEECCCCccccchhhhHHHH
Confidence            9999999875432  2478898888754421       00             3578999999753321       2679


Q ss_pred             HHHHHHcccCCeEEEEecCCC---CcHHHHHHHHHhhhhcceec
Q 047371          166 ADHIVSYAKPGAVVGISGILS---EQLPRIINRYSEFLEDILVS  206 (222)
Q Consensus       166 l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~  206 (222)
                      ++.+.++|+|||++++.....   .....+.+.+.+.|......
T Consensus       183 l~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~  226 (317)
T 3gjy_A          183 FEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVI  226 (317)
T ss_dssp             HHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEE
T ss_pred             HHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEE
Confidence            999999999999999864322   22356777777777665543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.49  E-value=7.3e-14  Score=114.39  Aligned_cols=109  Identities=19%  Similarity=0.233  Sum_probs=78.8

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhc---CCCCCc---------------------
Q 047371           58 GGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALN---NIGPKK---------------------  110 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~---------------------  110 (222)
                      ++.+|||+|||+|.++..+++.   +..+|+|+|+|+.+++.|++++...   ++. .+                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT-ARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc-ccchhhhhhhhhcccccchhhhh
Confidence            4679999999999999988875   3468999999999999999988755   432 11                     


Q ss_pred             ----ee-------------EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------
Q 047371          111 ----IK-------------LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------  161 (222)
Q Consensus       111 ----v~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------  161 (222)
                          +.             +...|......     ...            ....++||+|++|+++..            
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~------------~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~  192 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRA-----LSA------------VLAGSAPDVVLTDLPYGERTHWEGQVPGQP  192 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGG-----HHH------------HHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred             hhhhhhhhccccccccccceeecccccccc-----ccc------------ccCCCCceEEEeCCCeeccccccccccccH
Confidence                44             66555433210     000            002347999999988653            


Q ss_pred             HHHHHHHHHHcccCCeEEEEecC
Q 047371          162 LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      +..+++++.++|||||++++.+.
T Consensus       193 ~~~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          193 VAGLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEES
T ss_pred             HHHHHHHHHHhcCCCcEEEEeCc
Confidence            23689999999999999998533

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.49  E-value=8.7e-13  Score=107.37  Aligned_cols=130  Identities=18%  Similarity=0.131  Sum_probs=89.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|.+|||+|||+|..+..+++.  +.++|+|+|+++.+++...+.+...    .++.+...|+.....     ...  
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i~~Da~~~~~-----~~~--  142 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPLLADARFPQS-----YKS--  142 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEEECCTTCGGG-----TTT--
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEEEcccccchh-----hhc--
Confidence            568999999999999999999875  4679999999999876554444332    278888887754310     000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHH-HHHHHcccCCeEEEEecC---------CCCcHHHHHHHHHhh-hhc
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLA-DHIVSYAKPGAVVGISGI---------LSEQLPRIINRYSEF-LED  202 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~---------~~~~~~~~~~~~~~~-~~~  202 (222)
                                  ..++||+|+++.+.......+ ..+.+.|||||.++++.-         ..+...+..+.+.+. |..
T Consensus       143 ------------~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~  210 (232)
T 3id6_C          143 ------------VVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFET  210 (232)
T ss_dssp             ------------TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEE
T ss_pred             ------------cccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEE
Confidence                        245799999998775555554 556669999999998521         122334555666553 766


Q ss_pred             ceeccc
Q 047371          203 ILVSEK  208 (222)
Q Consensus       203 ~~~~~~  208 (222)
                      ++....
T Consensus       211 ~~~~~l  216 (232)
T 3id6_C          211 IQIINL  216 (232)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            665544

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.48  E-value=3.2e-13  Score=117.23  Aligned_cols=99  Identities=21%  Similarity=0.330  Sum_probs=83.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +|++|||+|||+|.+++.+++.|+.+|+|+|.++ +++.|++++..+++. +++++...+.+.+.               
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~-~~i~~i~~~~~~~~---------------  145 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE-DRVHVLPGPVETVE---------------  145 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT-TTEEEEESCTTTCC---------------
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC-ceEEEEeeeeeeec---------------
Confidence            6999999999999999999999989999999986 889999999999987 58999998876653               


Q ss_pred             cccccCCCCCCCeeEEEeccccc------cHHHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLN------PLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~------~~~~~l~~~~~~LkpgG~l~~  181 (222)
                              ..++||+|++...-+      .+..++....++|||||.++-
T Consensus       146 --------lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          146 --------LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             --------CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             --------CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence                    346899999865322      256678888899999999874

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.48  E-value=4.1e-13  Score=106.11  Aligned_cols=133  Identities=14%  Similarity=0.219  Sum_probs=92.8

Q ss_pred             HHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           48 CLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        48 ~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      +.+++.++  ++++.+|||+|||+|.++..+++. ..+|+|+|+++..           .+  .++.+...|......  
T Consensus        13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~--~~v~~~~~D~~~~~~--   76 (191)
T 3dou_A           13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI--AGVRFIRCDIFKETI--   76 (191)
T ss_dssp             HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC--TTCEEEECCTTSSSH--
T ss_pred             HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC--CCeEEEEccccCHHH--
Confidence            44555554  578999999999999999999988 5799999999841           22  367888888754311  


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCCcHHH
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSEQLPR  191 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  191 (222)
                      ........        .. ...++||+|+++++...              ...+++.+.++|||||.+++..+......+
T Consensus        77 ~~~~~~~~--------~~-~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~  147 (191)
T 3dou_A           77 FDDIDRAL--------RE-EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTND  147 (191)
T ss_dssp             HHHHHHHH--------HH-HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHH
T ss_pred             HHHHHHHh--------hc-ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHH
Confidence            00000000        00 00148999999875321              234688899999999999998777777788


Q ss_pred             HHHHHHhhhhccee
Q 047371          192 IINRYSEFLEDILV  205 (222)
Q Consensus       192 ~~~~~~~~~~~~~~  205 (222)
                      +...+...|..+..
T Consensus       148 ~~~~l~~~F~~v~~  161 (191)
T 3dou_A          148 FIAIWRKNFSSYKI  161 (191)
T ss_dssp             HHHHHGGGEEEEEE
T ss_pred             HHHHHHHhcCEEEE
Confidence            88888888766654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.48  E-value=2.7e-13  Score=108.11  Aligned_cols=102  Identities=15%  Similarity=0.188  Sum_probs=82.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++.+|||+|||+|.++..+++..  ..+++++|+++.+++.|+++....++.  ++.+...+.....           
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~-----------  141 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD--NVIVIVGDGTLGY-----------  141 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEESCGGGCC-----------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCC-----------
Confidence            4578899999999999999988763  279999999999999999998877764  6777777653210           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 ...++||+|+++.+++++.   +.+.++|||||.+++...
T Consensus       142 -----------~~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          142 -----------EPLAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             -----------GGGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEES
T ss_pred             -----------CCCCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEEEC
Confidence                       0256799999998887654   588999999999998743

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.48  E-value=3e-13  Score=109.02  Aligned_cols=99  Identities=22%  Similarity=0.200  Sum_probs=80.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+    ++.+...|.....             
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~~-------------  129 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLGY-------------  129 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGCC-------------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCccccc-------------
Confidence            4578899999999999999999886 799999999999999999886554    5777777654311             


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ...++||+|+++.+++++.   +.+.+.|||||.+++...
T Consensus       130 ---------~~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          130 ---------EEEKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             ---------GGGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEEC
T ss_pred             ---------ccCCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEEc
Confidence                     0356899999998887654   478899999999998743

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.48  E-value=3.5e-13  Score=109.12  Aligned_cols=106  Identities=17%  Similarity=0.093  Sum_probs=81.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.+.+++..+    .++.+...|......      .+. 
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~~------~~~-  143 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPHK------YRM-  143 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGGG------GGG-
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChhh------hcc-
Confidence            467889999999999999999876  4579999999999888888777654    278888887754210      000 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccH-HHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPL-PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  ..++||+|+++.+.... ..++.++.+.|||||.++++..
T Consensus       144 ------------~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          144 ------------LIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             ------------GCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------cCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence                        35689999998873322 4468889999999999999643

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=7e-13  Score=108.10  Aligned_cols=99  Identities=23%  Similarity=0.313  Sum_probs=79.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|+++....+.   ++.+...|...+.              
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~--------------  101 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLEIA--------------  101 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGGCC--------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCC---ceEEEECChhhcc--------------
Confidence            467899999999999999999875 5899999999999999999876654   5777777765442              


Q ss_pred             ccccccCCCCCCCeeEEEeccc-cc-----cHHHHHHHHHHcccCCeEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANIL-LN-----PLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~-~~-----~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                               ..++||+|++... .+     ....+++.+.++|||||.+++.
T Consensus       102 ---------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          102 ---------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             ---------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                     2467999997532 22     2456899999999999999874

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.48  E-value=1.7e-13  Score=127.84  Aligned_cols=124  Identities=18%  Similarity=0.255  Sum_probs=92.8

Q ss_pred             cccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhc------
Q 047371           35 LAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALN------  104 (222)
Q Consensus        35 ~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~------  104 (222)
                      ...+....+......+.+...+  .++.+|||+|||+|.++..+++.+  ..+|+|+|+++.+++.|++++...      
T Consensus       696 me~gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~  775 (950)
T 3htx_A          696 MEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEAC  775 (950)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCS
T ss_pred             HhhCcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhc
Confidence            3333334454444444444442  378999999999999999999875  269999999999999999866532      


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-----HHHHHHHHcccCCeEE
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVV  179 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l  179 (222)
                      ++  .++.+...|...+..                      ..++||+|+++.+++++.     .+++.+.++|||| .+
T Consensus       776 gl--~nVefiqGDa~dLp~----------------------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~L  830 (950)
T 3htx_A          776 NV--KSATLYDGSILEFDS----------------------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LL  830 (950)
T ss_dssp             SC--SEEEEEESCTTSCCT----------------------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EE
T ss_pred             CC--CceEEEECchHhCCc----------------------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EE
Confidence            33  378899988876543                      567899999999888743     4789999999999 76


Q ss_pred             EEec
Q 047371          180 GISG  183 (222)
Q Consensus       180 ~~~~  183 (222)
                      +++.
T Consensus       831 IIST  834 (950)
T 3htx_A          831 IVST  834 (950)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.48  E-value=9.5e-13  Score=109.92  Aligned_cols=155  Identities=16%  Similarity=0.054  Sum_probs=96.9

Q ss_pred             chhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeC-ChHHHHHHHHHHHh-----cCCC---CCce
Q 047371           43 ATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDI-DPQVIKSAHQNAAL-----NNIG---PKKI  111 (222)
Q Consensus        43 ~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~-s~~~l~~a~~~~~~-----~~~~---~~~v  111 (222)
                      +.+..+.+++....  .++.+|||+|||+|.+++.+++.+..+|+|+|+ ++.+++.|++++..     +++.   ..++
T Consensus        62 ~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v  141 (281)
T 3bzb_A           62 SGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP  141 (281)
T ss_dssp             CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred             cHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence            44666666666553  468899999999999999999887669999999 89999999999843     3321   0145


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHccc---C--CeEEEEec
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAK---P--GAVVGISG  183 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk---p--gG~l~~~~  183 (222)
                      .+...+......   .....+             ..++||+|++..++++   ...+++.+.++|+   |  ||.+++..
T Consensus       142 ~~~~~~~~~~~~---~~~~~~-------------~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          142 KVVPYRWGDSPD---SLQRCT-------------GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             EEEECCTTSCTH---HHHHHH-------------SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             EEEEecCCCccH---HHHhhc-------------cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            555333221100   000000             2467999998554443   5678999999999   9  99877642


Q ss_pred             CCC-----CcHHHHHHHHHh-h-hhcceecccCCceE
Q 047371          184 ILS-----EQLPRIINRYSE-F-LEDILVSEKDDWRC  213 (222)
Q Consensus       184 ~~~-----~~~~~~~~~~~~-~-~~~~~~~~~~~w~~  213 (222)
                      ...     ....++.+.+.+ + |..........|..
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~~  242 (281)
T 3bzb_A          206 THHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDP  242 (281)
T ss_dssp             CC--------CTHHHHHHHHSTTEEEEEEECCC----
T ss_pred             EeeecccchhHHHHHHHHHhcCCEEEEEecccccccc
Confidence            221     223455555554 3 66666656666743

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.48  E-value=9.1e-13  Score=106.04  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=80.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.+++++...    .++.+...|......     ...  
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~-----~~~--  139 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEE-----YRA--  139 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGG-----GTT--
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcch-----hhc--
Confidence            457889999999999999999875 3 479999999999999999887654    378888887754210     000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHH-HHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLP-QLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (222)
                                  ..++||+|+++.+..... .++.++.+.|||||.+++.
T Consensus       140 ------------~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          140 ------------LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ------------TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------------ccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence                        235799999988754443 3499999999999999985

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.48  E-value=3.8e-13  Score=110.36  Aligned_cols=111  Identities=14%  Similarity=0.195  Sum_probs=87.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++. .++++..++..........  .+.  
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~~l~~--~~~--  152 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALPVLDEMIK--DEK--  152 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHH--SGG--
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHHHHHHh--ccC--
Confidence            46789999999999999999875 3 579999999999999999999888874 5788888876433100000  000  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                 +.++||+|+++.....+..+++.+.++|||||++++..
T Consensus       153 -----------~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          153 -----------NHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             -----------GTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             -----------CCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence                       14689999998877778899999999999999999853

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=2.1e-13  Score=112.26  Aligned_cols=95  Identities=13%  Similarity=0.165  Sum_probs=78.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++.        ++.+...+...+..             
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~-------------   90 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP--------QVEWFTGYAENLAL-------------   90 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT--------TEEEECCCTTSCCS-------------
T ss_pred             CCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc--------CCEEEECchhhCCC-------------
Confidence            57899999999999999999885 479999999999988776543        57788887765532             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                               +.++||+|+++.++++   ...+++++.++|| ||.+++.+
T Consensus        91 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A           91 ---------PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             ---------CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             ---------CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEE
Confidence                     5688999999988766   4678999999999 99777743

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.47  E-value=7.3e-13  Score=109.34  Aligned_cols=113  Identities=21%  Similarity=0.293  Sum_probs=86.1

Q ss_pred             HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChH------HHHHHHHHHHhcCCCCCceeEEecC--
Q 047371           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQ------VIKSAHQNAALNNIGPKKIKLHLVP--  117 (222)
Q Consensus        49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~------~l~~a~~~~~~~~~~~~~v~~~~~~--  117 (222)
                      ..++... ++++.+|||+|||+|.++..+++. + ..+++|+|+++.      +++.|++++...++. .++++...|  
T Consensus        33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~  111 (275)
T 3bkx_A           33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG-DRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG-GGEEEECSCCT
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC-CceEEEECChh
Confidence            3344433 567899999999999999998876 3 379999999997      999999998877764 478888876  


Q ss_pred             -CcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecC
Q 047371          118 -DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                       ......                      +.++||+|+++.++++.   ..+++.+.++++|||++++.++
T Consensus       112 ~~~~~~~----------------------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          112 SDDLGPI----------------------ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             TTCCGGG----------------------TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             hhccCCC----------------------CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence             222111                      46789999998888763   4467777777788999999644

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.47  E-value=1.9e-12  Score=102.52  Aligned_cols=111  Identities=22%  Similarity=0.233  Sum_probs=83.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++   ++.+...|...+               
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~---------------  109 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIGDVSEF---------------  109 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEESCGGGC---------------
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC---CEEEEECchHHc---------------
Confidence            36889999999999999999988767899999999999999999887765   577877776443               


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC-CCCcHHHHHHHHHh
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI-LSEQLPRIINRYSE  198 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~  198 (222)
                               + ++||+|++|+|++..     ..+++.+.+.+  | .+++.+. .......+.+.+.+
T Consensus       110 ---------~-~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~  164 (207)
T 1wy7_A          110 ---------N-SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--D-VVYSIHLAKPEVRRFIEKFSWE  164 (207)
T ss_dssp             ---------C-CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--S-EEEEEEECCHHHHHHHHHHHHH
T ss_pred             ---------C-CCCCEEEEcCCCccccCCchHHHHHHHHHhc--C-cEEEEEeCCcCCHHHHHHHHHH
Confidence                     2 379999999997653     46788888888  4 4555443 23334444455444

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.47  E-value=1.3e-13  Score=111.74  Aligned_cols=108  Identities=11%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             HHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCC-hHHHHHH---HHHHHhcCCCCCceeEEecCCccccccc
Q 047371           51 LLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDID-PQVIKSA---HQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        51 ~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s-~~~l~~a---~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      ++....+++.+|||+|||+|.++..+++. +..+|+|+|+| +.+++.|   ++++...++.  ++.+...+...++.  
T Consensus        17 ~~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~--~v~~~~~d~~~l~~--   92 (225)
T 3p2e_A           17 LTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS--NVVFVIAAAESLPF--   92 (225)
T ss_dssp             HHHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS--SEEEECCBTTBCCG--
T ss_pred             HHHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEcCHHHhhh--
Confidence            33334567889999999999999998863 55789999999 6666665   7777666764  78888887765521  


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCeEEEE
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~  181 (222)
                           .              ....+|.+.++.+...        ...+++++.++|||||.+++
T Consensus        93 -----~--------------~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           93 -----E--------------LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             -----G--------------GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             -----h--------------ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence                 0              1256888888876543        24578999999999999998

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.47  E-value=6.2e-13  Score=118.16  Aligned_cols=142  Identities=17%  Similarity=0.123  Sum_probs=100.8

Q ss_pred             ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-CC-CEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      .|..|..........++...  .+++.+|||+|||+|..+..+++. +. .+++|+|+++.+++.+++++...++.  ++
T Consensus       235 ~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~--~v  312 (450)
T 2yxl_A          235 AFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK--IV  312 (450)
T ss_dssp             HHHTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC--SE
T ss_pred             hhhCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cE
Confidence            44455544333333333332  457889999999999999998875 33 79999999999999999999988875  78


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-------------------------HHHH
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-------------------------PQLA  166 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-------------------------~~~l  166 (222)
                      .+...|...+..                    ..+.++||+|++++|+...                         ..++
T Consensus       313 ~~~~~D~~~~~~--------------------~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL  372 (450)
T 2yxl_A          313 KPLVKDARKAPE--------------------IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELL  372 (450)
T ss_dssp             EEECSCTTCCSS--------------------SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHH
T ss_pred             EEEEcChhhcch--------------------hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHH
Confidence            888877654420                    0033679999998876431                         4679


Q ss_pred             HHHHHcccCCeEEEEecCC---CCcHHHHHHHHHhh
Q 047371          167 DHIVSYAKPGAVVGISGIL---SEQLPRIINRYSEF  199 (222)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~~~~~  199 (222)
                      +.+.++|||||.+++++..   .++...+...+..+
T Consensus       373 ~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~  408 (450)
T 2yxl_A          373 ESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVH  408 (450)
T ss_dssp             HHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             HHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence            9999999999999986432   23334455555553

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.47  E-value=3.6e-13  Score=114.30  Aligned_cols=102  Identities=19%  Similarity=0.259  Sum_probs=84.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|++++...++.  ++.+...|......          
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~--~v~~~~~d~~~~~~----------  140 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE--NVIFVCGDGYYGVP----------  140 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCG----------
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CeEEEECChhhccc----------
Confidence            467899999999999999998876 3 357999999999999999999888875  68888877654311          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  ..++||+|+++.+++++.   +.+.+.|||||.+++...
T Consensus       141 ------------~~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          141 ------------EFSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             ------------GGCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEBC
T ss_pred             ------------cCCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEEC
Confidence                        346799999999888765   578889999999999754

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.47  E-value=7.8e-13  Score=114.80  Aligned_cols=115  Identities=18%  Similarity=0.130  Sum_probs=88.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|.+++.++..+. .+++|+|+++.+++.|++++..+++. +++++...|...+..           
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~-~~i~~~~~D~~~~~~-----------  282 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL-DKIKFIQGDATQLSQ-----------  282 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG-GGCEEEECCGGGGGG-----------
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCc-----------
Confidence            56789999999999999999998753 48999999999999999999988875 478999988866532           


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                                 +.++||+|++|+|+..           +..+++.+.+.| .|+.+++++    +...+.+.+..
T Consensus       283 -----------~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~----~~~~~~~~~~~  341 (373)
T 3tm4_A          283 -----------YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT----EKKAIEEAIAE  341 (373)
T ss_dssp             -----------TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEES----CHHHHHHHHHH
T ss_pred             -----------ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC----CHHHHHHHHHH
Confidence                       4578999999999753           356788888888 444444432    33444445543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.47  E-value=4.5e-14  Score=114.71  Aligned_cols=100  Identities=21%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++..+++. .++.+...|...+.               
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~---------------  140 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIA-DKIEFICGDFLLLA---------------  140 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHG---------------
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCC-cCeEEEECChHHhc---------------
Confidence            78999999999999999999886 79999999999999999999888874 37889888875542               


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHH---HHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQ---LADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~---~l~~~~~~LkpgG~l~~~  182 (222)
                              +.++||+|++++++++...   .+.++.++|+|||.+++.
T Consensus       141 --------~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          141 --------SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             --------GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             --------ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence                    3568999999999887433   456788999999986663

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.47  E-value=5.1e-13  Score=108.34  Aligned_cols=102  Identities=20%  Similarity=0.236  Sum_probs=81.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++....+++++|+++.+++.|++++...++.  ++.+...+....              
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~--------------  152 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK--NVHVILGDGSKG--------------  152 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGC--------------
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEECCcccC--------------
Confidence            4578899999999999999988763278999999999999999999888775  577877765111              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              +....+||+|+++.+++++.   +.+.+.|||||.+++...
T Consensus       153 --------~~~~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          153 --------FPPKAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             --------CGGGCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEEC
T ss_pred             --------CCCCCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEEe
Confidence                    11234699999988876543   478899999999999744

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.47  E-value=1.6e-13  Score=121.86  Aligned_cols=121  Identities=14%  Similarity=0.088  Sum_probs=91.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++++...++.  ++.+...|...+..        . 
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~--nv~v~~~Da~~l~~--------~-  171 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS--NAIVTNHAPAELVP--------H-  171 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS--SEEEECCCHHHHHH--------H-
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhh--------h-
Confidence            457899999999999999998875  3479999999999999999999999986  78887777654320        0 


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC--CC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI--LS  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~--~~  186 (222)
                                  ..++||+|++++|+..                         ...++..+.++|||||.+++++.  ..
T Consensus       172 ------------~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  239 (456)
T 3m4x_A          172 ------------FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP  239 (456)
T ss_dssp             ------------HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred             ------------ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence                        2467999999998532                         12679999999999999988533  23


Q ss_pred             -CcHHHHHHHHHhh
Q 047371          187 -EQLPRIINRYSEF  199 (222)
Q Consensus       187 -~~~~~~~~~~~~~  199 (222)
                       ++...+...+..+
T Consensus       240 eEne~vv~~~l~~~  253 (456)
T 3m4x_A          240 EENEEIISWLVENY  253 (456)
T ss_dssp             GGTHHHHHHHHHHS
T ss_pred             ccCHHHHHHHHHhC
Confidence             3334444444443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.47  E-value=3.4e-13  Score=113.15  Aligned_cols=114  Identities=13%  Similarity=0.108  Sum_probs=86.8

Q ss_pred             HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-CCceeEEecCCccccccc
Q 047371           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-PKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~~~~~~~~~~  125 (222)
                      ....++..+..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...++. ..++.+...|...+.   
T Consensus        71 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~---  146 (299)
T 3g2m_A           71 EAREFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA---  146 (299)
T ss_dssp             HHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC---
T ss_pred             HHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC---
Confidence            3344444443445699999999999999999885 68999999999999999998765531 026888888876552   


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEec-ccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIAN-ILLNP-----LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~-~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                          ..++||+|++. ..+++     ...+++++.++|||||.+++...
T Consensus       147 --------------------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          147 --------------------LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             --------------------CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------------------cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence                                36789998864 43443     35689999999999999999644

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.46  E-value=8.8e-13  Score=103.93  Aligned_cols=143  Identities=10%  Similarity=0.120  Sum_probs=89.0

Q ss_pred             HHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-C--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           48 CLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-G--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        48 ~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      +.+++..+  ++++.+|||+|||+|.++..+++. +  ..+|+|+|+++..           ..  .++.+...|.....
T Consensus        10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~--~~v~~~~~d~~~~~   76 (201)
T 2plw_A           10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI--PNVYFIQGEIGKDN   76 (201)
T ss_dssp             HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC--TTCEEEECCTTTTS
T ss_pred             HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC--CCceEEEccccchh
Confidence            44455544  567899999999999999999875 4  4799999999831           11  25677777665432


Q ss_pred             cccccccccchhcccc----ccccCCCCCCCeeEEEecccccc-----H---------HHHHHHHHHcccCCeEEEEecC
Q 047371          123 ASMNERVDGVVEYLSS----HEIRGISETEEYDVVIANILLNP-----L---------PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~v~~~~~~~~-----~---------~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ... -...+.++....    ..+....+.++||+|+++.+.+.     .         ..+++.+.++|||||.+++..+
T Consensus        77 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A           77 MNN-IKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             SCC-C-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhh-hccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence            000 000000000000    00000014568999999876543     1         1368889999999999999766


Q ss_pred             CCCcHHHHHHHHHhhhhcce
Q 047371          185 LSEQLPRIINRYSEFLEDIL  204 (222)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~  204 (222)
                      ......++...+...|..+.
T Consensus       156 ~~~~~~~l~~~l~~~f~~v~  175 (201)
T 2plw_A          156 LGSQTNNLKTYLKGMFQLVH  175 (201)
T ss_dssp             CSTTHHHHHHHHHTTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHheEE
Confidence            66667777777776654443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.46  E-value=3.4e-13  Score=108.51  Aligned_cols=116  Identities=17%  Similarity=0.190  Sum_probs=86.2

Q ss_pred             HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC------CCEEEEEeCChHHHHHHHHHHHhcCC---CCCceeEEecC
Q 047371           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG------AAMFVGVDIDPQVIKSAHQNAALNNI---GPKKIKLHLVP  117 (222)
Q Consensus        47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~~  117 (222)
                      .+.+.+...++++.+|||+|||+|.++..+++..      ..+|+++|+++.+++.|++++...++   ...++.+...|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            3444443345678999999999999999988763      25999999999999999999887762   11378888777


Q ss_pred             CcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      ......   .  ..             ...++||+|+++.+.++   +++.+.++|||||.+++..
T Consensus       149 ~~~~~~---~--~~-------------~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          149 IYQVNE---E--EK-------------KELGLFDAIHVGASASE---LPEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             GGGCCH---H--HH-------------HHHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEEE
T ss_pred             hHhccc---c--cC-------------ccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEE
Confidence            643210   0  00             03467999999988774   4578899999999999863

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.46  E-value=8.5e-13  Score=113.50  Aligned_cols=100  Identities=23%  Similarity=0.245  Sum_probs=83.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++. +++++...+...+.              
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~--------------  112 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVS--------------  112 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEEESCTTTCC--------------
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC-CcEEEEEcchhhCC--------------
Confidence            47889999999999999999988777999999996 889999999888875 47889888876542              


Q ss_pred             ccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~  181 (222)
                               ..++||+|+++.+.++     +...+..+.++|||||.+++
T Consensus       113 ---------~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  153 (348)
T 2y1w_A          113 ---------LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  153 (348)
T ss_dssp             ---------CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             ---------CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence                     2357999999876543     45677888999999999985

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.46  E-value=7.5e-13  Score=107.85  Aligned_cols=111  Identities=11%  Similarity=0.115  Sum_probs=88.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++++..++......       .+.+
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~-------~l~~  140 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-HKINFIESDAMLALD-------NLLQ  140 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHH-------HHHH
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-------HHHh
Confidence            46789999999999999998875 3 579999999999999999999888874 478888887643310       0000


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              .-.+.++||+|+++.....+..+++.+.++|+|||++++..
T Consensus       141 --------~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          141 --------GQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             --------STTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             --------ccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence                    00014689999999877778899999999999999999854

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.46  E-value=6.2e-13  Score=108.11  Aligned_cols=121  Identities=16%  Similarity=0.155  Sum_probs=88.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++.+...+..........   .  
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~~~~~~---~--  131 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-NKIFLKLGSALETLQVLID---S--  131 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHH---C--
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHHHHHHHh---h--
Confidence            347889999999999999999876 3 579999999999999999999887765 3588888775432100000   0  


Q ss_pred             hccccccccCCCCC--CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISET--EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~--~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                        ..........+.  ++||+|+++.....+..+++.+.++|+|||.+++...
T Consensus       132 --~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          132 --KSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             --SSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             --cccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence              000000000022  7899999998877788999999999999999999653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.46  E-value=9.3e-13  Score=112.76  Aligned_cols=143  Identities=16%  Similarity=0.165  Sum_probs=98.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhc--CCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALN--NIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...  ++...++++...|+..+..       ..
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~-------~~  190 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK-------NA  190 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH-------TS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH-------hc
Confidence            356789999999999999999876 4579999999999999999987642  4433478888887644310       00


Q ss_pred             hhccccccccCCCCCCCeeEEEecccc--cc-----HHHHHHHHHHcccCCeEEEEe-cCCCCcH---HHHHHHHHhhhh
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILL--NP-----LPQLADHIVSYAKPGAVVGIS-GILSEQL---PRIINRYSEFLE  201 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~--~~-----~~~~l~~~~~~LkpgG~l~~~-~~~~~~~---~~~~~~~~~~~~  201 (222)
                                   +.++||+|+++++.  +.     ...+++.+.++|+|||.+++. +......   .++.+.+...|.
T Consensus       191 -------------~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  257 (334)
T 1xj5_A          191 -------------AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK  257 (334)
T ss_dssp             -------------CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             -------------cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCc
Confidence                         35689999997652  11     367899999999999999995 3332222   334444454454


Q ss_pred             c--------ceecccCCceEeeccc
Q 047371          202 D--------ILVSEKDDWRCVSGTK  218 (222)
Q Consensus       202 ~--------~~~~~~~~w~~~~~~k  218 (222)
                      .        ++....+.|.-+.+.|
T Consensus       258 ~~~~~~~~~vP~y~~g~~gf~~as~  282 (334)
T 1xj5_A          258 GSVNYAWTSVPTYPSGVIGFMLCST  282 (334)
T ss_dssp             SCEEEEEEECTTSGGGEEEEEEEEC
T ss_pred             cccceEEEeCCcccCCceEEEEccc
Confidence            1        2223336676555444

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.45  E-value=4.5e-13  Score=116.13  Aligned_cols=156  Identities=14%  Similarity=0.097  Sum_probs=97.5

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhh-cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~-~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ..+.++|+..|..+ ......+...+.... ..+.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..++
T Consensus       182 ~~~~~~~~~F~Q~n-~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng  259 (369)
T 3bt7_A          182 MIYRQVENSFTQPN-AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANH  259 (369)
T ss_dssp             CEEEEETTSCCCSB-HHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCeecCC-HHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcC
Confidence            55677787666443 333344444443333 23678999999999999998875 5799999999999999999999988


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCC-CCCCCeeEEEeccccccHHHHHHHHHHcccCCeEE-EEec
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGI-SETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV-GISG  183 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l-~~~~  183 (222)
                      +.  ++++...|+..+........    +++.   +... ....+||+|+++||...+   ...+.+.|+++|.+ +++|
T Consensus       260 ~~--~v~~~~~d~~~~~~~~~~~~----~~~~---l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          260 ID--NVQIIRMAAEEFTQAMNGVR----EFNR---LQGIDLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CC--SEEEECCCSHHHHHHHSSCC----CCTT---GGGSCGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred             CC--ceEEEECCHHHHHHHHhhcc----cccc---ccccccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence            85  88898888755421000000    0000   0000 011379999999987643   22334444566655 4566


Q ss_pred             CCCCcHHHHHHHH
Q 047371          184 ILSEQLPRIINRY  196 (222)
Q Consensus       184 ~~~~~~~~~~~~~  196 (222)
                      .+....+++....
T Consensus       328 ~p~t~ard~~~l~  340 (369)
T 3bt7_A          328 NPETLCKNLETLS  340 (369)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            5555555555443

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.45  E-value=8.3e-13  Score=106.53  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      ..+..++....+++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.       .++.+...+...+.   
T Consensus        28 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~---   96 (239)
T 3bxo_A           28 SDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFR---   96 (239)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCC---
T ss_pred             HHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHcc---
Confidence            34555565555678999999999999999998875 38999999999999998864       25667777765442   


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEe-ccccccH------HHHHHHHHHcccCCeEEEEecC
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIA-NILLNPL------PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~-~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                          ..++||+|++ ...++++      ..+++++.++|||||.+++...
T Consensus        97 --------------------~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A           97 --------------------LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             --------------------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             --------------------cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence                                3567999995 4355443      4689999999999999999643

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.45  E-value=1.2e-12  Score=117.09  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.+++++...++.  ++.+...|+..+..        .   
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~--nv~~~~~D~~~~~~--------~---  183 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS--NVALTHFDGRVFGA--------A---  183 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEECCCSTTHHH--------H---
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHhhh--------h---
Confidence            7899999999999999999875  3479999999999999999999988875  78888887765421        0   


Q ss_pred             cccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ..++||+|++++|+..                         ...++..+.++|||||.+++++.
T Consensus       184 ----------~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          184 ----------VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             ----------STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ----------ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence                      2467999999988631                         13578999999999999998643

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.45  E-value=5.9e-13  Score=107.15  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=88.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++++...+......       .+ 
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~~-------~~-  137 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALETLD-------EL-  137 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH-------HH-
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CeEEEEEcCHHHHHH-------HH-
Confidence            346889999999999999999875 3 579999999999999999999888874 478888877643210       00 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              ..-...++||+|+++++...+..+++.+.++|+|||.+++...
T Consensus       138 --------~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          138 --------LAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             --------HHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             --------HhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence                    0000116799999998877788999999999999999999544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.45  E-value=7.6e-13  Score=108.83  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=83.1

Q ss_pred             HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      .+..++...++++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..    .  +  +...+...+..   
T Consensus        43 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~----~--~--~~~~d~~~~~~---  110 (260)
T 2avn_A           43 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV----K--N--VVEAKAEDLPF---  110 (260)
T ss_dssp             HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC----S--C--EEECCTTSCCS---
T ss_pred             HHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcC----C--C--EEECcHHHCCC---
Confidence            3455566666678999999999999999998875 589999999999999988753    1  1  55555544322   


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc----HHHHHHHHHHcccCCeEEEEecC
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                         +.++||+|++...+.+    ...+++++.++|||||.+++...
T Consensus       111 -------------------~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          111 -------------------PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             -------------------CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------------CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence                               5678999999764433    46789999999999999998643

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.44  E-value=1.5e-12  Score=114.87  Aligned_cols=121  Identities=20%  Similarity=0.235  Sum_probs=87.2

Q ss_pred             hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHH-------HHHHHhcCCCCCceeEEe
Q 047371           45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSA-------HQNAALNNIGPKKIKLHL  115 (222)
Q Consensus        45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~~~~v~~~~  115 (222)
                      ...+..++... ++++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|       ++++...++...++.+..
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~  307 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence            34444444433 567899999999999999999885 667899999999999998       888887775324788877


Q ss_pred             cCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--cHHHHHHHHHHcccCCeEEEEec
Q 047371          116 VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--PLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      ++.....+.     ...             ..++||+|+++..+.  .....+.++.+.|||||.+++..
T Consensus       308 gD~~~~~~~-----~~~-------------~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          308 KKSFVDNNR-----VAE-------------LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             SSCSTTCHH-----HHH-------------HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cCccccccc-----ccc-------------ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            643211000     000             135799999975442  35567899999999999999963

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.44  E-value=1.1e-12  Score=106.34  Aligned_cols=109  Identities=17%  Similarity=0.258  Sum_probs=87.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++++...+......       .+  
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~l~-------~l--  140 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLRLGPALATLE-------QL--  140 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHHH-------HH--
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-------HH--
Confidence            46789999999999999999875 3 469999999999999999999887775 468888877533210       00  


Q ss_pred             ccccccccCCCCC--CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISET--EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~--~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             .  ...  ++||+|+++.....+..+++.+.++|+|||++++...
T Consensus       141 -------~--~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          141 -------T--QGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             -------H--TSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             -------H--hcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence                   0  012  6899999988877788999999999999999999644

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.44  E-value=4.1e-12  Score=110.18  Aligned_cols=116  Identities=14%  Similarity=0.085  Sum_probs=89.4

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc-cccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT-FTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~  135 (222)
                      ++.+|||+| |+|.++..++..+. .+++|+|+++.+++.|++++..+++.  ++++...|... +..            
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~--~v~~~~~D~~~~l~~------------  236 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE--DIEIFTFDLRKPLPD------------  236 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC--CEEEECCCTTSCCCT------------
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEEChhhhhchh------------
Confidence            578999999 99999999988754 79999999999999999999988875  78888888755 210            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeE-EEEecCC-CCcH---HHHHHHHH
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAV-VGISGIL-SEQL---PRIINRYS  197 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~-l~~~~~~-~~~~---~~~~~~~~  197 (222)
                               ...++||+|++|+|++.  ...+++.+.+.|||||. ++++... ..+.   ..+.+.+.
T Consensus       237 ---------~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~  296 (373)
T 2qm3_A          237 ---------YALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLL  296 (373)
T ss_dssp             ---------TTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHH
T ss_pred             ---------hccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHH
Confidence                     02357999999998864  45688999999999994 3554333 2334   45555554

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.44  E-value=1.3e-12  Score=111.00  Aligned_cols=143  Identities=14%  Similarity=0.125  Sum_probs=96.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhc--CCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALN--NIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...  ++...++++...|+..+..         
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~---------  176 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK---------  176 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH---------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH---------
Confidence            356789999999999999999876 4579999999999999999987643  3323478888877644310         


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc------H-HHHHHHHHHcccCCeEEEEecC-C---CCcHHHHHHHHHhhhh
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP------L-PQLADHIVSYAKPGAVVGISGI-L---SEQLPRIINRYSEFLE  201 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------~-~~~l~~~~~~LkpgG~l~~~~~-~---~~~~~~~~~~~~~~~~  201 (222)
                                .  ..++||+|+++.+...      + ..+++.+.++|+|||.+++... .   ......+.+.+...|.
T Consensus       177 ----------~--~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~  244 (314)
T 2b2c_A          177 ----------N--HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFP  244 (314)
T ss_dssp             ----------H--CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             ----------h--cCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCC
Confidence                      0  3568999999874321      1 5789999999999999999631 1   1233455555655554


Q ss_pred             ccee-------cccCCceEeecccC
Q 047371          202 DILV-------SEKDDWRCVSGTKF  219 (222)
Q Consensus       202 ~~~~-------~~~~~w~~~~~~k~  219 (222)
                      ....       ...|.|.-+...|.
T Consensus       245 ~v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          245 AVTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             cceEEEEEecCcCCCceEEEEEeCC
Confidence            4332       22355555555443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.44  E-value=1.1e-12  Score=110.96  Aligned_cols=141  Identities=15%  Similarity=0.139  Sum_probs=97.8

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccch
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .++...++++...|+..+..          
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~----------  163 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK----------  163 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----------
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh----------
Confidence            46789999999999999999876 457999999999999999998764  34433578888887644310          


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEec-CCC---CcHHHHHHHHHhhhhc
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISG-ILS---EQLPRIINRYSEFLED  202 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~-~~~---~~~~~~~~~~~~~~~~  202 (222)
                                 ...++||+|+++.+...       ..++++.+.++|+|||.+++.. ...   .....+.+.+...|..
T Consensus       164 -----------~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~  232 (304)
T 2o07_A          164 -----------QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV  232 (304)
T ss_dssp             -----------TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred             -----------hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCC
Confidence                       03568999999876431       2468999999999999999853 221   1234555555555543


Q ss_pred             cee-------cccCCceEeeccc
Q 047371          203 ILV-------SEKDDWRCVSGTK  218 (222)
Q Consensus       203 ~~~-------~~~~~w~~~~~~k  218 (222)
                      ...       ...+.|.-+..+|
T Consensus       233 v~~~~~~vP~~~~g~~g~~~as~  255 (304)
T 2o07_A          233 VAYAYCTIPTYPSGQIGFMLCSK  255 (304)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEES
T ss_pred             ceeEEEEeccccCcceEEEEEeC
Confidence            322       2235676555554

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.43  E-value=8.9e-13  Score=118.01  Aligned_cols=100  Identities=23%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.+++.+++.+..+|+|+|+++ +++.|++++..+++. +++++...+...+.              
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~-~~v~~~~~d~~~~~--------------  220 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVS--------------  220 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT-TTEEEEESCTTTCC--------------
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC-CcEEEEECchhhCc--------------
Confidence            46789999999999999999988778999999998 999999999988885 48999988875542              


Q ss_pred             ccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~  181 (222)
                               ..++||+|+++++.++     +...+..+.++|||||.+++
T Consensus       221 ---------~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          221 ---------LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             ---------CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             ---------cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence                     2357999999987543     34466788999999999985

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.43  E-value=5e-13  Score=107.42  Aligned_cols=112  Identities=22%  Similarity=0.326  Sum_probs=84.7

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCC---CCCceeEEecCCcccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNI---GPKKIKLHLVPDRTFT  122 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~~~~~~~  122 (222)
                      +.+.+....+++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+.   ...++.+...|.....
T Consensus        67 ~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (226)
T 1i1n_A           67 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  146 (226)
T ss_dssp             HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence            34444333567899999999999999998875 3 35999999999999999999877553   0136778777654321


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      .                      ..++||+|+++.+++.   +++.+.++|||||.++++..
T Consensus       147 ~----------------------~~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          147 A----------------------EEAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             G----------------------GGCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEES
T ss_pred             c----------------------cCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEEe
Confidence            1                      3567999999887764   45688999999999999643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.43  E-value=1.2e-12  Score=115.64  Aligned_cols=141  Identities=17%  Similarity=0.137  Sum_probs=99.6

Q ss_pred             ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCcee
Q 047371           36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK  112 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~  112 (222)
                      .|..|..........++...  .+++.+|||+|||+|..+..+++.. ..+++|+|+++.+++.+++++...++   ++.
T Consensus       222 ~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~---~~~  298 (429)
T 1sqg_A          222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KAT  298 (429)
T ss_dssp             TGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCE
T ss_pred             HHhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC---CeE
Confidence            34455544333333333322  4578999999999999999998863 37999999999999999999988876   356


Q ss_pred             EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHH
Q 047371          113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLAD  167 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~  167 (222)
                      +...|...+..       ..             +.++||+|++++|+..                         ...+++
T Consensus       299 ~~~~D~~~~~~-------~~-------------~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~  358 (429)
T 1sqg_A          299 VKQGDGRYPSQ-------WC-------------GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILD  358 (429)
T ss_dssp             EEECCTTCTHH-------HH-------------TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHH
T ss_pred             EEeCchhhchh-------hc-------------ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHH
Confidence            77777654320       00             3468999999988643                         136799


Q ss_pred             HHHHcccCCeEEEEecC---CCCcHHHHHHHHHhh
Q 047371          168 HIVSYAKPGAVVGISGI---LSEQLPRIINRYSEF  199 (222)
Q Consensus       168 ~~~~~LkpgG~l~~~~~---~~~~~~~~~~~~~~~  199 (222)
                      .+.++|||||.+++++.   ..++...+...+..+
T Consensus       359 ~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~  393 (429)
T 1sqg_A          359 AIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT  393 (429)
T ss_dssp             HHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             HHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhC
Confidence            99999999999998643   234444555566554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.43  E-value=3.5e-13  Score=110.36  Aligned_cols=85  Identities=24%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++. .++.+...|......      ..     
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------~~-----  132 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLM------DA-----  132 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSST------TT-----
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC-ccEEEEEcchhhhhh------hh-----
Confidence            5779999999999999888764 4579999999999999999999988875 368898887643100      00     


Q ss_pred             ccccccCCCC--CCCeeEEEecccccc
Q 047371          137 SSHEIRGISE--TEEYDVVIANILLNP  161 (222)
Q Consensus       137 ~~~~~~~~~~--~~~~D~v~~~~~~~~  161 (222)
                             +..  +++||+|++|+|++.
T Consensus       133 -------~~~~~~~~fD~i~~npp~~~  152 (254)
T 2h00_A          133 -------LKEESEIIYDFCMCNPPFFA  152 (254)
T ss_dssp             -------STTCCSCCBSEEEECCCCC-
T ss_pred             -------hhcccCCcccEEEECCCCcc
Confidence                   001  258999999988764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.43  E-value=4.8e-13  Score=111.64  Aligned_cols=130  Identities=11%  Similarity=0.081  Sum_probs=85.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC----------------------------C
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP----------------------------K  109 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----------------------------~  109 (222)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++++.......                            .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            678999999999996555555445799999999999999988654321000                            0


Q ss_pred             ceeEEecCCcc-cccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEE
Q 047371          110 KIKLHLVPDRT-FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       110 ~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      .+.+...|... .+.      .           ....+.++||+|+++..+++       ...+++++.++|||||++++
T Consensus       151 ~~~~~~~D~~~~~~~------~-----------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~  213 (289)
T 2g72_A          151 VKRVLPIDVHQPQPL------G-----------AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL  213 (289)
T ss_dssp             EEEEECCCTTSSSTT------C-----------SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hceEEecccCCCCCc------c-----------ccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            02233334332 100      0           00013567999999988876       34579999999999999998


Q ss_pred             ecC---------------CCCcHHHHHHHHHhh-hhcce
Q 047371          182 SGI---------------LSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       182 ~~~---------------~~~~~~~~~~~~~~~-~~~~~  204 (222)
                      ...               ......++.+.+.+. |..+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~  252 (289)
T 2g72_A          214 IGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRD  252 (289)
T ss_dssp             EEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred             EEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEE
Confidence            532               123567777777664 55444

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.43  E-value=8.4e-13  Score=110.59  Aligned_cols=108  Identities=15%  Similarity=0.285  Sum_probs=82.5

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      .+..++... ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++....+.. .++++...|...+    
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~D~~~~----   89 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKT----   89 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTS----
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcceecc----
Confidence            333444333 4578899999999999999999885 68999999999999999988665543 3788888887654    


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHH--------------------HHcccCCeEEE
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHI--------------------VSYAKPGAVVG  180 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~--------------------~~~LkpgG~l~  180 (222)
                                          +...||+|++|+|++....++..+                    ++.++|||.++
T Consensus        90 --------------------~~~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           90 --------------------DLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             --------------------CCCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             --------------------cchhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence                                233799999999998765544333                    25789998764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.42  E-value=6.1e-13  Score=118.34  Aligned_cols=119  Identities=15%  Similarity=0.159  Sum_probs=89.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+|||+|||+|..+..+++.  +.++|+|+|+++.+++.+++++...++.   +.+...|...+..        . 
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~---v~~~~~Da~~l~~--------~-  166 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP---LAVTQAPPRALAE--------A-  166 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC---CEEECSCHHHHHH--------H-
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe---EEEEECCHHHhhh--------h-
Confidence            457899999999999999999875  3468999999999999999999988863   6677766544310        0 


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC--CC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI--LS  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~--~~  186 (222)
                                  ..++||+|++|+|+..                         ...+++.+.++|||||.+++++.  ..
T Consensus       167 ------------~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~  234 (464)
T 3m6w_A          167 ------------FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP  234 (464)
T ss_dssp             ------------HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             ------------ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence                        2467999999988631                         15689999999999999988533  23


Q ss_pred             C-cHHHHHHHHHh
Q 047371          187 E-QLPRIINRYSE  198 (222)
Q Consensus       187 ~-~~~~~~~~~~~  198 (222)
                      . +...+...+..
T Consensus       235 eEne~vv~~~l~~  247 (464)
T 3m6w_A          235 EENEGVVAHFLKA  247 (464)
T ss_dssp             GGTHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHH
Confidence            3 33444444443

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.42  E-value=9.8e-13  Score=112.82  Aligned_cols=116  Identities=20%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CC-----CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GA-----AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~-----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      ++.+|||+|||+|.++..+++. +.     .+++|+|+++.+++.|+.++...++   ++.+...|.....         
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~---~~~i~~~D~l~~~---------  197 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---KMTLLHQDGLANL---------  197 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---CCEEEESCTTSCC---------
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC---CceEEECCCCCcc---------
Confidence            4679999999999999988764 21     6899999999999999999887775   4566666653220         


Q ss_pred             chhccccccccCCCCCCCeeEEEeccccccH---------------------HHHHHHHHHcccCCeEEEEec----CCC
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNPL---------------------PQLADHIVSYAKPGAVVGISG----ILS  186 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---------------------~~~l~~~~~~LkpgG~l~~~~----~~~  186 (222)
                                    ..++||+|++|||+...                     ..+++++.+.|||||++++..    +..
T Consensus       198 --------------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~  263 (344)
T 2f8l_A          198 --------------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT  263 (344)
T ss_dssp             --------------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS
T ss_pred             --------------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCC
Confidence                          35689999999996432                     247999999999999988853    234


Q ss_pred             CcHHHHHHHHHhh
Q 047371          187 EQLPRIINRYSEF  199 (222)
Q Consensus       187 ~~~~~~~~~~~~~  199 (222)
                      .+...+.+.+.+.
T Consensus       264 ~~~~~ir~~l~~~  276 (344)
T 2f8l_A          264 SDFAKVDKFIKKN  276 (344)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhC
Confidence            5556777766654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.42  E-value=6e-12  Score=107.83  Aligned_cols=140  Identities=16%  Similarity=0.156  Sum_probs=102.6

Q ss_pred             cC-CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KG-GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~-~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+ +.+|||+|||+|.++..+++. +..+++++|+ +.+++.|+++....++. +++++...|......        .  
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--------~--  244 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG-GRVEFFEKNLLDARN--------F--  244 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG-GGEEEEECCTTCGGG--------G--
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC-CceEEEeCCcccCcc--------c--
Confidence            45 789999999999999988875 5679999999 88999999998877765 478898888754310        0  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCC------------------------
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGIL------------------------  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~------------------------  185 (222)
                                 ..+.||+|++...+++.     ..+++++.+.|||||.+++.+..                        
T Consensus       245 -----------~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (352)
T 3mcz_A          245 -----------EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNH  313 (352)
T ss_dssp             -----------TTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTT
T ss_pred             -----------CCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCC
Confidence                       24569999998888752     46899999999999999985421                        


Q ss_pred             --CCcHHHHHHHHHhh-hhcceecccCCceEeecccCC
Q 047371          186 --SEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTKFS  220 (222)
Q Consensus       186 --~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~~  220 (222)
                        .....++.+.+++. |..++ ...+.|..+.++|.+
T Consensus       314 ~~~~t~~e~~~ll~~aGf~~~~-~~~g~~~l~~a~kp~  350 (352)
T 3mcz_A          314 GELHPTPWIAGVVRDAGLAVGE-RSIGRYTLLIGQRSS  350 (352)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEE-EEETTEEEEEEECCC
T ss_pred             CCcCCHHHHHHHHHHCCCceee-eccCceEEEEEecCC
Confidence              11233444444443 55554 345678777777754

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.42  E-value=3.5e-12  Score=100.64  Aligned_cols=106  Identities=24%  Similarity=0.359  Sum_probs=76.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++.       ++++...|...+               
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~---------------  107 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEI---------------  107 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGC---------------
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHC---------------
Confidence            3678999999999999999988876689999999999999998864       456777765433               


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                               + ++||+|++|+++++..     .+++.+.+.+   |.+++.+.. .....+.+.+..
T Consensus       108 ---------~-~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~-~~~~~~~~~~~~  160 (200)
T 1ne2_A          108 ---------S-GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNA-KARDFLRREFSA  160 (200)
T ss_dssp             ---------C-CCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEEG-GGHHHHHHHHHH
T ss_pred             ---------C-CCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEcC-chHHHHHHHHHH
Confidence                     3 5799999999987643     4788888887   455554322 333444444433

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.41  E-value=1.2e-11  Score=107.05  Aligned_cols=102  Identities=16%  Similarity=0.123  Sum_probs=83.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++++...|.... .            
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~-~------------  265 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA-DRCEILPGDFFET-I------------  265 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTTC-C------------
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC-CceEEeccCCCCC-C------------
Confidence            45789999999999999988875 5678999999 99999999999887775 5899988876421 0            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +. .||+|++...+++.     ..+++++.+.|||||++++.+.
T Consensus       266 ----------p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  308 (369)
T 3gwz_A          266 ----------PD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN  308 (369)
T ss_dssp             ----------CS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             ----------CC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence                      33 79999998887653     2589999999999999998543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.41  E-value=6.5e-12  Score=106.66  Aligned_cols=103  Identities=21%  Similarity=0.256  Sum_probs=84.1

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|.++..+++. +..+++++|++ .+++.|++++...++. .++++...|.....             
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-------------  228 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA-SRYHTIAGSAFEVD-------------  228 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG-GGEEEEESCTTTSC-------------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC-cceEEEecccccCC-------------
Confidence            56789999999999999988875 55799999999 9999999998877765 47889888765432             


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ..+.||+|++..++++.     ..+++++.+.|+|||++++.+.
T Consensus       229 ----------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          229 ----------YGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             ----------CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ----------CCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence                      12349999998777653     4689999999999999888644

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.41  E-value=9.3e-12  Score=107.10  Aligned_cols=102  Identities=19%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. .++++...|....             
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------------  252 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKE-------------  252 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT-TTEEEEECCTTTS-------------
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC-CCEEEEeCccccC-------------
Confidence            356789999999999999998875 4569999999 99999999999887765 3688988877543             


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                 +...+|+|++...+++     ...+++++.+.|||||.+++.+
T Consensus       253 -----------~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          253 -----------SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             -----------CCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             -----------CCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                       2223499999888865     3557999999999999998754

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.41  E-value=7.7e-12  Score=107.92  Aligned_cols=103  Identities=16%  Similarity=0.046  Sum_probs=83.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++++...|.... .           
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~-----------  245 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGDFFKP-L-----------  245 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTSC-C-----------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCCc-C-----------
Confidence            346789999999999999998875 4579999999 99999999999887765 4788888876431 0           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 +. .||+|+++..+++.     ..+++++.+.|||||++++.+.
T Consensus       246 -----------~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          246 -----------PV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             -----------SC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -----------CC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                       32 39999998888652     3689999999999999998655

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.41  E-value=8.8e-13  Score=110.36  Aligned_cols=108  Identities=15%  Similarity=0.190  Sum_probs=75.0

Q ss_pred             CCCcEEEEccCCCHHHHHHH----H-hCCCE--EEEEeCChHHHHHHHHHHHhc-CCCCCceeEEecCCc--cccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAI----K-FGAAM--FVGVDIDPQVIKSAHQNAALN-NIGPKKIKLHLVPDR--TFTASMNE  127 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la----~-~~~~~--v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~~~~--~~~~~~~~  127 (222)
                      ++.+|||+|||+|.++..++    . .+...  ++|+|.|+.|++.|++++... ++.  ++.+...+..  .+..   .
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~--~v~~~~~~~~~~~~~~---~  126 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE--NVKFAWHKETSSEYQS---R  126 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT--TEEEEEECSCHHHHHH---H
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC--cceEEEEecchhhhhh---h
Confidence            46799999999998765332    2 23454  499999999999999987643 443  5555443322  1100   0


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      ...+.             ++++||+|+++..+++   ....+++++++|||||.+++..
T Consensus       127 ~~~~~-------------~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          127 MLEKK-------------ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             HHTTT-------------CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hcccc-------------CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            00001             4678999999998887   4568999999999999999863

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.41  E-value=1.8e-13  Score=114.86  Aligned_cols=109  Identities=11%  Similarity=0.079  Sum_probs=78.6

Q ss_pred             HHHHHHhh-h-cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE-EecCCcccccc
Q 047371           48 CLLLLQSL-I-KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL-HLVPDRTFTAS  124 (222)
Q Consensus        48 ~~~~l~~~-~-~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~-~~~~~~~~~~~  124 (222)
                      +..++..+ + .++.+|||+|||+|.++..+++.+..+|+|+|+++.|++.+.++-       .++.. ...+...+.. 
T Consensus        73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-------~rv~~~~~~ni~~l~~-  144 (291)
T 3hp7_A           73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-------DRVRSMEQYNFRYAEP-  144 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-------TTEEEECSCCGGGCCG-
T ss_pred             HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cccceecccCceecch-
Confidence            44455444 2 357899999999999999999888789999999999998854421       12211 1112211110 


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                           ..+             +..+||+++++..++++..++.++.++|||||.+++.
T Consensus       145 -----~~l-------------~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          145 -----VDF-------------TEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             -----GGC-------------TTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             -----hhC-------------CCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence                 001             3445999999999999999999999999999999885

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.41  E-value=1.1e-12  Score=104.77  Aligned_cols=102  Identities=15%  Similarity=0.232  Sum_probs=75.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHH----HHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQ----NAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      .+++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.+.+    +....++.  ++.+...|...+..       
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~--~v~~~~~d~~~l~~-------   95 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP--NLLYLWATAERLPP-------   95 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT--TEEEEECCSTTCCS-------
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC--ceEEEecchhhCCC-------
Confidence            457889999999999999999886 35899999999998886433    33334443  78898888866532       


Q ss_pred             cchhccccccccCCCCCCCeeEEEeccccccH--------HHHHHHHHHcccCCeEEEEe
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNPL--------PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~--------~~~l~~~~~~LkpgG~l~~~  182 (222)
                                     +.+. |.+++..+....        ..+++++.++|||||.+++.
T Consensus        96 ---------------~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           96 ---------------LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             ---------------CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             ---------------CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence                           3444 666654433221        57899999999999999984

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.40  E-value=5.7e-13  Score=107.41  Aligned_cols=110  Identities=17%  Similarity=0.285  Sum_probs=83.9

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CC------CEEEEEeCChHHHHHHHHHHHhcC-----CCCCceeEEe
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GA------AMFVGVDIDPQVIKSAHQNAALNN-----IGPKKIKLHL  115 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~------~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~v~~~~  115 (222)
                      +.+.+...++++.+|||+|||+|.++..+++. +.      .+|+++|+++.+++.|++++...+     ..  ++.+..
T Consensus        74 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~--~v~~~~  151 (227)
T 1r18_A           74 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG--QLLIVE  151 (227)
T ss_dssp             HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT--SEEEEE
T ss_pred             HHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC--ceEEEE
Confidence            34444333567899999999999999988874 32      589999999999999999887654     32  677877


Q ss_pred             cCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          116 VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      .|....                      +...++||+|+++.+++++   .+.+.++|||||.+++...
T Consensus       152 ~d~~~~----------------------~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          152 GDGRKG----------------------YPPNAPYNAIHVGAAAPDT---PTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             SCGGGC----------------------CGGGCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEEES
T ss_pred             CCcccC----------------------CCcCCCccEEEECCchHHH---HHHHHHHhcCCCEEEEEEe
Confidence            766431                      1123689999998887753   4788999999999999743

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.40  E-value=2.1e-12  Score=114.51  Aligned_cols=137  Identities=20%  Similarity=0.215  Sum_probs=100.0

Q ss_pred             cCCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh--------------CCCEEEEEeCChHHHHHHHHHHH
Q 047371           39 TGEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF--------------GAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~--------------~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      .|.+.+++.+.+++.+.+.  ++.+|+|+|||+|.++..+++.              ...+++|+|+++.+++.|+.++.
T Consensus       150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~  229 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  229 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence            4566777777777766643  4679999999999999887753              23579999999999999999998


Q ss_pred             hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH--------------------
Q 047371          103 LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL--------------------  162 (222)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~--------------------  162 (222)
                      .+++...+..+..+|.....                       ...+||+|++|||+...                    
T Consensus       230 l~g~~~~~~~i~~gD~l~~~-----------------------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~  286 (445)
T 2okc_A          230 LHGIGTDRSPIVCEDSLEKE-----------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQ  286 (445)
T ss_dssp             HTTCCSSCCSEEECCTTTSC-----------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHH
T ss_pred             HhCCCcCCCCEeeCCCCCCc-----------------------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchH
Confidence            88874224566666654321                       23489999999998641                    


Q ss_pred             HHHHHHHHHcccCCeEEEEecC-----CCCcHHHHHHHHHh
Q 047371          163 PQLADHIVSYAKPGAVVGISGI-----LSEQLPRIINRYSE  198 (222)
Q Consensus       163 ~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~~~  198 (222)
                      ..+++++.+.|||||++++...     .......+++.+.+
T Consensus       287 ~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~  327 (445)
T 2okc_A          287 LNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQ  327 (445)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHh
Confidence            2579999999999999887421     12234566665544

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.40  E-value=2.4e-12  Score=102.67  Aligned_cols=101  Identities=26%  Similarity=0.354  Sum_probs=77.4

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++   .     ++.+...+...+..             
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~---~-----~~~~~~~~~~~~~~-------------  108 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAA---G-----AGEVHLASYAQLAE-------------  108 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHT---C-----SSCEEECCHHHHHT-------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCC-CEEEEEcCCHHHHHHHHHh---c-----ccccchhhHHhhcc-------------
Confidence            467999999999999999998885 5899999999999999886   1     34455555433310             


Q ss_pred             ccccccCCCCCCCeeEEEeccccc--cHHHHHHHHHHcccCCeEEEEecC
Q 047371          137 SSHEIRGISETEEYDVVIANILLN--PLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                           .......+||+|+++.+++  ....+++++.++|||||++++...
T Consensus       109 -----~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          109 -----AKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             -----TCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             -----cccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence                 0011455699999987766  256789999999999999999643

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.40  E-value=9.8e-12  Score=105.81  Aligned_cols=101  Identities=15%  Similarity=0.044  Sum_probs=83.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++++...|.... .             
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~-------------  232 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS-GRAQVVVGSFFDP-L-------------  232 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTSC-C-------------
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC-cCeEEecCCCCCC-C-------------
Confidence            4579999999999999988864 5678999999 99999999998887775 4899988876421 0             


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               +. +||+|++...+++.     ..+++++++.|||||++++.+.
T Consensus       233 ---------p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          233 ---------PA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             ---------CC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             ---------CC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence                     33 79999998888752     4589999999999999998654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.40  E-value=3.6e-12  Score=104.98  Aligned_cols=116  Identities=17%  Similarity=0.198  Sum_probs=86.8

Q ss_pred             hHHHHHHHHhhh-cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           45 TKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        45 ~~~~~~~l~~~~-~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      ...+..++...+ .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++.       .++.+...+...+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~  143 (269)
T 1p91_A           71 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLP  143 (269)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCS
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcchhhCC
Confidence            334444554443 57889999999999999998876 4579999999999999998764       25667777765442


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHH
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRII  193 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (222)
                      .                      ++++||+|+++...    ..++++.++|||||.+++.........++.
T Consensus       144 ~----------------------~~~~fD~v~~~~~~----~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~  188 (269)
T 1p91_A          144 F----------------------SDTSMDAIIRIYAP----CKAEELARVVKPGGWVITATPGPRHLMELK  188 (269)
T ss_dssp             B----------------------CTTCEEEEEEESCC----CCHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred             C----------------------CCCceeEEEEeCCh----hhHHHHHHhcCCCcEEEEEEcCHHHHHHHH
Confidence            2                      56789999986653    357889999999999999766555544443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.39  E-value=4e-12  Score=99.64  Aligned_cols=123  Identities=17%  Similarity=0.233  Sum_probs=84.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CC---------CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE-ecCCcccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GA---------AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH-LVPDRTFTAS  124 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~---------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~-~~~~~~~~~~  124 (222)
                      ++++.+|||+|||+|.++..+++. +.         .+++|+|+++..           .+  .++.+. ..|...... 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~--~~~~~~~~~d~~~~~~-   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL--EGATFLCPADVTDPRT-   85 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC--TTCEEECSCCTTSHHH-
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC--CCCeEEEeccCCCHHH-
Confidence            578899999999999999999876 43         789999999831           12  255666 555433210 


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCCcHH
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSEQLP  190 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  190 (222)
                       ......            ..+.++||+|+++.+.+.              ...+++.+.++|||||.+++..+......
T Consensus        86 -~~~~~~------------~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~  152 (196)
T 2nyu_A           86 -SQRILE------------VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSR  152 (196)
T ss_dssp             -HHHHHH------------HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGH
T ss_pred             -HHHHHH------------hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHH
Confidence             000000            003457999999764432              13678999999999999999877666777


Q ss_pred             HHHHHHHhhhhccee
Q 047371          191 RIINRYSEFLEDILV  205 (222)
Q Consensus       191 ~~~~~~~~~~~~~~~  205 (222)
                      ++...+...|..+..
T Consensus       153 ~~~~~l~~~f~~v~~  167 (196)
T 2nyu_A          153 RLQRRLTEEFQNVRI  167 (196)
T ss_dssp             HHHHHHHHHEEEEEE
T ss_pred             HHHHHHHHHhcceEE
Confidence            777777776544443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.38  E-value=5.4e-12  Score=105.56  Aligned_cols=127  Identities=17%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC--CCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN--IGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...+  +...++++...|+..+..        .
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~--------~  147 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE--------N  147 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH--------H
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH--------h
Confidence            356789999999999999999876 45799999999999999999875432  222478888887654311        0


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc-----H--HHHHHHHHHcccCCeEEEEecCC----CCcHHHHHHHHHhhhh
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP-----L--PQLADHIVSYAKPGAVVGISGIL----SEQLPRIINRYSEFLE  201 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~--~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~  201 (222)
                                   ..++||+|+++.+...     +  ..+++.+.+.|+|||.+++....    ......+.+.+.+.|.
T Consensus       148 -------------~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  214 (283)
T 2i7c_A          148 -------------VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFK  214 (283)
T ss_dssp             -------------CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCS
T ss_pred             -------------CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCC
Confidence                         2567999999764221     1  68899999999999999986321    1233455566666555


Q ss_pred             cc
Q 047371          202 DI  203 (222)
Q Consensus       202 ~~  203 (222)
                      ..
T Consensus       215 ~v  216 (283)
T 2i7c_A          215 KV  216 (283)
T ss_dssp             EE
T ss_pred             ce
Confidence            43

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.38  E-value=5.9e-12  Score=100.81  Aligned_cols=98  Identities=11%  Similarity=0.147  Sum_probs=76.5

Q ss_pred             HHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        50 ~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      ..+.... ++.+|||+|||+|.++..++..     +|+|+++.+++.++++         ++.+...+...+..      
T Consensus        40 ~~l~~~~-~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~------   98 (219)
T 1vlm_A           40 QAVKCLL-PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR---------GVFVLKGTAENLPL------   98 (219)
T ss_dssp             HHHHHHC-CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT---------TCEEEECBTTBCCS------
T ss_pred             HHHHHhC-CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc---------CCEEEEcccccCCC------
Confidence            3444444 4889999999999999877543     9999999999999876         34566666544321      


Q ss_pred             ccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          130 DGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                      +.++||+|+++..+++   ...+++++.++|+|||.+++...
T Consensus        99 ----------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A           99 ----------------KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             ----------------CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------------CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                            4678999999888765   46789999999999999998643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.38  E-value=1.4e-11  Score=105.90  Aligned_cols=103  Identities=13%  Similarity=0.094  Sum_probs=83.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++++...|.....             
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-------------  246 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFEPL-------------  246 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTSCC-------------
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCCCC-------------
Confidence            46789999999999999988875 4578999999 99999999999887765 47888888764310             


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                +. .||+|+++..+++.     ..+++++.+.|||||.+++.+..
T Consensus       247 ----------~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          247 ----------PR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             ----------SS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----------CC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence                      22 49999998887652     36899999999999999986543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.37  E-value=1.8e-12  Score=105.58  Aligned_cols=102  Identities=12%  Similarity=0.009  Sum_probs=77.6

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-----CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-----GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      ++.+|||+|||+|..+..+++.     +..+|+|+|+++.+++.|+.      +. .++++..+|......      .+.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~-~~v~~~~gD~~~~~~------l~~  147 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DM-ENITLHQGDCSDLTT------FEH  147 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GC-TTEEEEECCSSCSGG------GGG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cC-CceEEEECcchhHHH------HHh
Confidence            5789999999999999998875     45799999999999888761      11 378888888754310      000


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHH-cccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVS-YAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~  184 (222)
                                  ....+||+|+++..-..+..++.++.+ +|||||++++...
T Consensus       148 ------------~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          148 ------------LREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             ------------GSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             ------------hccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence                        023479999987654456778999997 9999999999643

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.37  E-value=4.3e-13  Score=109.22  Aligned_cols=110  Identities=12%  Similarity=0.119  Sum_probs=72.9

Q ss_pred             HHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           48 CLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        48 ~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      +..++..+  ..++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|+++....... .+..+.......+    
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~-~~~~~~~~~~~~~----   99 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM-EQFNFRNAVLADF----   99 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE-CSCCGGGCCGGGC----
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc-ccceEEEeCHhHc----
Confidence            34444444  2346799999999999999999887679999999999999887653221100 0001111110000    


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                          +...+|.+.++..+..+..+++++.++|||||.+++.
T Consensus       100 --------------------~~~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          100 --------------------EQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             --------------------CSCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             --------------------CcCCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence                                1222455666655656688999999999999999885

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.37  E-value=4.6e-12  Score=110.16  Aligned_cols=102  Identities=18%  Similarity=0.163  Sum_probs=83.9

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhc---------------CCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALN---------------NIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~v~~~~~~~~~~  121 (222)
                      ++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.+++|+..+               ++.  ++++...|+..+
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~--~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK--TIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS--EEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC--ceEEEcCcHHHH
Confidence            6899999999999999998886 6678999999999999999999988               664  477877776544


Q ss_pred             ccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      ..                   .  ..++||+|+++|+. ...++++.+.+.||+||.+++++
T Consensus       125 ~~-------------------~--~~~~fD~I~lDP~~-~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          125 MA-------------------E--RHRYFHFIDLDPFG-SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HH-------------------H--STTCEEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HH-------------------h--ccCCCCEEEeCCCC-CHHHHHHHHHHhcCCCCEEEEEe
Confidence            21                   0  13579999988754 35789999999999999988864

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.37  E-value=4e-12  Score=101.25  Aligned_cols=120  Identities=13%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..++    .+++|+|+++.                 ++.+...+......             
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~-----------------~~~~~~~d~~~~~~-------------  111 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL-----------------DPRVTVCDMAQVPL-------------  111 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS-----------------STTEEESCTTSCSC-------------
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC-----------------CceEEEeccccCCC-------------
Confidence            467899999999999988762    68999999986                 23355566544321             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecCCC--CcHHHHHHHHHhh-hhcceec-ccCC
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGILS--EQLPRIINRYSEF-LEDILVS-EKDD  210 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~  210 (222)
                               +.++||+|+++..+++  ...+++++.++|+|||.+++.+...  ....++.+.++.. |..+... ..+.
T Consensus       112 ---------~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  182 (215)
T 2zfu_A          112 ---------EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSH  182 (215)
T ss_dssp             ---------CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTT
T ss_pred             ---------CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCe
Confidence                     5678999999887764  5678999999999999999975543  4667788888775 6655543 3456


Q ss_pred             ceEeecccC
Q 047371          211 WRCVSGTKF  219 (222)
Q Consensus       211 w~~~~~~k~  219 (222)
                      |..+..+|.
T Consensus       183 ~~~~~~~k~  191 (215)
T 2zfu_A          183 FFLFDFQKT  191 (215)
T ss_dssp             CEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            777777764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.36  E-value=4.2e-12  Score=105.17  Aligned_cols=134  Identities=10%  Similarity=-0.079  Sum_probs=93.2

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +.+++|||+|||+|.++..+++.+ .+++++|+++.+++.|++++..  .++...++++...|+..+             
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-------------  136 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-------------  136 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-------------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-------------
Confidence            456899999999999999888776 8999999999999999887643  122234777877765433             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec-CCCC---cHHHHHHHHHhhhhcceecc---
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG-ILSE---QLPRIINRYSEFLEDILVSE---  207 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~---  207 (222)
                                 . ++||+|+++..- + ..+++.+.+.|+|||.+++.. ....   ....+.+.+...|.......   
T Consensus       137 -----------~-~~fD~Ii~d~~d-p-~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~v  202 (262)
T 2cmg_A          137 -----------I-KKYDLIFCLQEP-D-IHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPL  202 (262)
T ss_dssp             -----------C-CCEEEEEESSCC-C-HHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTT
T ss_pred             -----------H-hhCCEEEECCCC-h-HHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEcc
Confidence                       2 679999998532 2 348999999999999999852 2211   23444555555554433222   


Q ss_pred             --cCCceEeeccc
Q 047371          208 --KDDWRCVSGTK  218 (222)
Q Consensus       208 --~~~w~~~~~~k  218 (222)
                        .+.|.-+.++|
T Consensus       203 P~~g~~~~~~as~  215 (262)
T 2cmg_A          203 RILSNKGYIYASF  215 (262)
T ss_dssp             CTTCCEEEEEEES
T ss_pred             CCCcccEEEEeeC
Confidence              45666545554

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.36  E-value=6.2e-12  Score=100.42  Aligned_cols=98  Identities=26%  Similarity=0.273  Sum_probs=77.4

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++..         .+...+.....       .+.    
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~---------~~~~~d~~~~~-------~~~----   89 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLD---------HVVLGDIETMD-------MPY----   89 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSS---------EEEESCTTTCC-------CCS----
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCC---------cEEEcchhhcC-------CCC----
Confidence            478899999999999999998885 899999999999999987531         35555553321       001    


Q ss_pred             ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ++++||+|+++..+++   ...+++++.+.|+|||.+++...
T Consensus        90 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           90 ---------EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             ---------CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             ---------CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence                     4578999999888766   46789999999999999999643

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.35  E-value=5.6e-12  Score=106.28  Aligned_cols=84  Identities=20%  Similarity=0.333  Sum_probs=66.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...++.  ++++...|...+              
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~--~v~~~~~D~~~~--------------  102 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYN--NLEVYEGDAIKT--------------  102 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCC--CEEC----CCSS--------------
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEECchhhC--------------
Confidence            4578899999999999999998874 69999999999999999998766653  788888877554              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHH
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLA  166 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l  166 (222)
                                +..+||+|++|+|++.....+
T Consensus       103 ----------~~~~~D~Vv~n~py~~~~~~~  123 (299)
T 2h1r_A          103 ----------VFPKFDVCTANIPYKISSPLI  123 (299)
T ss_dssp             ----------CCCCCSEEEEECCGGGHHHHH
T ss_pred             ----------CcccCCEEEEcCCcccccHHH
Confidence                      344799999999998755543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.34  E-value=5.9e-12  Score=109.77  Aligned_cols=104  Identities=19%  Similarity=0.175  Sum_probs=85.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCc-eeEEecCCcccccccccccccch
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKK-IKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++.+|||++||+|.+++.+++.  +..+|+++|+++.+++.+++|+..+++. .+ +.+...|+..+.           
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~-~~~v~v~~~Da~~~l-----------  118 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP-EDRYEIHGMEANFFL-----------  118 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHH-----------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CceEEEEeCCHHHHH-----------
Confidence            36889999999999999998875  4478999999999999999999999986 24 888887764431           


Q ss_pred             hcccccccc-CCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIR-GISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~-~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              . .  ..++||+|+++| +....++++.+.+.|++||.+++++
T Consensus       119 --------~~~--~~~~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          119 --------RKE--WGFGFDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             --------HSC--CSSCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------HHh--hCCCCcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence                    0 0  135799999998 4445679999999999999999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.34  E-value=1.4e-11  Score=106.38  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=83.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++++...|......       ++   
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------~~---  245 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS-ERIHGHGANLLDRDV-------PF---  245 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG-GGEEEEECCCCSSSC-------CC---
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc-cceEEEEccccccCC-------CC---
Confidence            46789999999999999988874 5679999999 99999999998877764 478898887654210       00   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                + ++||+|++...+++.     ..+++++.+.|||||.+++.+.
T Consensus       246 ----------p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          246 ----------P-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             ----------C-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ----------C-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence                      3 679999998888642     3579999999999999988543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.33  E-value=4.3e-11  Score=99.62  Aligned_cols=111  Identities=19%  Similarity=0.180  Sum_probs=82.3

Q ss_pred             CCcEEEEccCC---CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc--cccccc
Q 047371           59 GELFLDYGTGS---GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN--ERVDGV  132 (222)
Q Consensus        59 ~~~vLD~G~G~---G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~  132 (222)
                      ..+|||+|||+   |.++..+.+. +..+|+++|+|+.+++.|++++...    .++.+...|.....+-..  +....+
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~----~~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD----PNTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC----TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC----CCeEEEEeeCCCchhhhccchhhccC
Confidence            47999999999   9887766654 5579999999999999999987431    378888888754311000  000001


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                   +..+||+|+++..++++     ..+++++.+.|||||+++++....
T Consensus       154 -------------d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          154 -------------DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             -------------CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             -------------CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence                         33579999999888763     568999999999999999976554

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.33  E-value=5.4e-12  Score=103.65  Aligned_cols=135  Identities=15%  Similarity=0.154  Sum_probs=98.6

Q ss_pred             CCcchhHHHHHHHHhh-------hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           40 GEHATTKLCLLLLQSL-------IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        40 ~~~~~~~~~~~~l~~~-------~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      +.|.+++..+..++.+       +.+..+|||+|||.|-++..++.. +..+|+++|+++.+++.++.++..+++.   .
T Consensus       107 ~~H~STreRLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~---~  183 (281)
T 3lcv_B          107 SVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP---H  183 (281)
T ss_dssp             TTSHHHHHHGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC---E
T ss_pred             hcCCCHHHHhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---c
Confidence            4567777766666644       345789999999999999988765 7789999999999999999999988864   4


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHH----HHHHHHHcccCCeEEEEecC--C
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ----LADHIVSYAKPGAVVGISGI--L  185 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~----~l~~~~~~LkpgG~l~~~~~--~  185 (222)
                      .+...|...-.                       +.+++|+++++-.++++.+    .+-.+...|+++|.++....  .
T Consensus       184 ~~~v~D~~~~~-----------------------p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl  240 (281)
T 3lcv_B          184 RTNVADLLEDR-----------------------LDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSL  240 (281)
T ss_dssp             EEEECCTTTSC-----------------------CCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC--
T ss_pred             eEEEeeecccC-----------------------CCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhh
Confidence            55555543221                       6788999999999988754    23389999999999988544  4


Q ss_pred             CCcHHHHHHHHHhhh
Q 047371          186 SEQLPRIINRYSEFL  200 (222)
Q Consensus       186 ~~~~~~~~~~~~~~~  200 (222)
                      .....-+.+.|+..|
T Consensus       241 ~Grs~gm~~~Y~~~~  255 (281)
T 3lcv_B          241 GQRSKGMFQNYSQSF  255 (281)
T ss_dssp             -----CHHHHHHHHH
T ss_pred             cCCCcchhhHHHHHH
Confidence            444444555555554

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.32  E-value=1.3e-11  Score=102.78  Aligned_cols=104  Identities=13%  Similarity=0.158  Sum_probs=72.4

Q ss_pred             CCCcEEEEccCCCH----HHHHHHHh-C----CCEEEEEeCChHHHHHHHHHHHhc----CCC---------------C-
Q 047371           58 GGELFLDYGTGSGI----LGIAAIKF-G----AAMFVGVDIDPQVIKSAHQNAALN----NIG---------------P-  108 (222)
Q Consensus        58 ~~~~vLD~G~G~G~----~~~~la~~-~----~~~v~gvD~s~~~l~~a~~~~~~~----~~~---------------~-  108 (222)
                      ++.+|||+|||+|.    +++.+++. +    ..+|+|+|+|+.+++.|++++...    ++.               . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45789999999997    56666654 3    258999999999999999875210    000               0 


Q ss_pred             ---------CceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHccc
Q 047371          109 ---------KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAK  174 (222)
Q Consensus       109 ---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk  174 (222)
                               .++.|...+....+                     +...++||+|+|...+.+     ...+++.+++.|+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~---------------------~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~  243 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQ---------------------YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK  243 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSS---------------------CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE
T ss_pred             ceeechhhcccCeEEecccCCCC---------------------CCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC
Confidence                     13445544443211                     112468999999766544     2568999999999


Q ss_pred             CCeEEEEe
Q 047371          175 PGAVVGIS  182 (222)
Q Consensus       175 pgG~l~~~  182 (222)
                      |||++++.
T Consensus       244 pgG~L~lg  251 (274)
T 1af7_A          244 PDGLLFAG  251 (274)
T ss_dssp             EEEEEEEC
T ss_pred             CCcEEEEE
Confidence            99999983

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.31  E-value=3.9e-11  Score=101.60  Aligned_cols=122  Identities=11%  Similarity=0.021  Sum_probs=88.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++|.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++++..+++.  ++.+...|...+...         
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~--~v~~~~~D~~~~~~~---------  168 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS--CCELAEEDFLAVSPS---------  168 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGSCTT---------
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCChHhcCcc---------
Confidence            467899999999999999998874  4579999999999999999999998875  788888876544210         


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---------------------------HHHHHHHHHHcccCCeEEEEecC--
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---------------------------LPQLADHIVSYAKPGAVVGISGI--  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~~~--  184 (222)
                                .....+||.|++++|+..                           ..+++..+.++++ ||.+++++.  
T Consensus       169 ----------~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          169 ----------DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             ----------CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             ----------ccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence                      001246999999887621                           1135777888887 888887533  


Q ss_pred             C-CCcHHHHHHHHHhh
Q 047371          185 L-SEQLPRIINRYSEF  199 (222)
Q Consensus       185 ~-~~~~~~~~~~~~~~  199 (222)
                      . .++...+...+.++
T Consensus       238 ~~~Ene~~v~~~l~~~  253 (309)
T 2b9e_A          238 CQEENEDVVRDALQQN  253 (309)
T ss_dssp             CGGGTHHHHHHHHTTS
T ss_pred             ChHHhHHHHHHHHHhC
Confidence            2 23344444555443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.31  E-value=3e-11  Score=101.61  Aligned_cols=115  Identities=16%  Similarity=0.218  Sum_probs=80.8

Q ss_pred             EeCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC
Q 047371           30 ILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP  108 (222)
Q Consensus        30 ~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~  108 (222)
                      -+.|...|++........+..++... ..++++|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++..  .  
T Consensus        21 ~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~--~--   95 (295)
T 3gru_A           21 MFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKEL--Y--   95 (295)
T ss_dssp             ---------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHH--C--
T ss_pred             CCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhcc--C--
Confidence            45566667664444444444555444 4578899999999999999999884 7999999999999999998762  2  


Q ss_pred             CceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHH
Q 047371          109 KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVS  171 (222)
Q Consensus       109 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~  171 (222)
                      .++++...|+..+.+                      +..+||+|++|+|++....++..+.+
T Consensus        96 ~~v~vi~gD~l~~~~----------------------~~~~fD~Iv~NlPy~is~pil~~lL~  136 (295)
T 3gru_A           96 NNIEIIWGDALKVDL----------------------NKLDFNKVVANLPYQISSPITFKLIK  136 (295)
T ss_dssp             SSEEEEESCTTTSCG----------------------GGSCCSEEEEECCGGGHHHHHHHHHH
T ss_pred             CCeEEEECchhhCCc----------------------ccCCccEEEEeCcccccHHHHHHHHh
Confidence            378899998876533                      34569999999999876666555544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.30  E-value=3e-12  Score=106.85  Aligned_cols=120  Identities=13%  Similarity=0.074  Sum_probs=77.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-cCCCCCceeEE--ecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-NNIGPKKIKLH--LVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~  132 (222)
                      ++++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..+++.... .... .++.+.  ..|...+           
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l-----------  144 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKM-----------  144 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGC-----------
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhC-----------
Confidence            567899999999999999999887  6899999998 53332221100 0000 145666  5554433           


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccc-------cH--HHHHHHHHHcccCCe--EEEEecCCCCcH--HHHHHHHHhh
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLN-------PL--PQLADHIVSYAKPGA--VVGISGILSEQL--PRIINRYSEF  199 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~-------~~--~~~l~~~~~~LkpgG--~l~~~~~~~~~~--~~~~~~~~~~  199 (222)
                                   +.++||+|+++....       ..  ..+++.+.++|||||  .+++..+.....  .++.+.+...
T Consensus       145 -------------~~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~~  211 (276)
T 2wa2_A          145 -------------EPFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQAR  211 (276)
T ss_dssp             -------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             -------------CCCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHHH
Confidence                         567899999987611       01  136888999999999  888865553332  1444445544


Q ss_pred             hhcc
Q 047371          200 LEDI  203 (222)
Q Consensus       200 ~~~~  203 (222)
                      |...
T Consensus       212 f~~v  215 (276)
T 2wa2_A          212 FGGG  215 (276)
T ss_dssp             HCCE
T ss_pred             cCCE
Confidence            4433

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.30  E-value=2.5e-12  Score=112.77  Aligned_cols=99  Identities=13%  Similarity=0.163  Sum_probs=73.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|+++    ++......+...+...+.         .    
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g-~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~---------~----  167 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAG-VRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVR---------R----  167 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTT-CEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHH---------H----
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC-CcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcc---------c----
Confidence            467899999999999999999876 4999999999999999875    322000001111111111         1    


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~  182 (222)
                               ++++||+|+++.+++++   ..+++++.++|||||++++.
T Consensus       168 ---------~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          168 ---------TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             ---------HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence                     35789999999988774   56899999999999999985

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.29  E-value=4.3e-11  Score=104.30  Aligned_cols=103  Identities=23%  Similarity=0.309  Sum_probs=80.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCC---------------------------------------CEEEEEeCChHHHHH
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMFVGVDIDPQVIKS   96 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~---------------------------------------~~v~gvD~s~~~l~~   96 (222)
                      .+++..|||++||+|.+++.++....                                       .+|+|+|+++.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            35688999999999999998876421                                       469999999999999


Q ss_pred             HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHH
Q 047371           97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHI  169 (222)
Q Consensus        97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~  169 (222)
                      |+.|+..+++. +++++...|...+.                       ...+||+|++|||+..       +..+...+
T Consensus       273 Ar~Na~~~gl~-~~i~~~~~D~~~l~-----------------------~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~l  328 (385)
T 3ldu_A          273 ARENAEIAGVD-EYIEFNVGDATQFK-----------------------SEDEFGFIITNPPYGERLEDKDSVKQLYKEL  328 (385)
T ss_dssp             HHHHHHHHTCG-GGEEEEECCGGGCC-----------------------CSCBSCEEEECCCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CceEEEECChhhcC-----------------------cCCCCcEEEECCCCcCccCCHHHHHHHHHHH
Confidence            99999998886 47888888876542                       3458999999999853       33456666


Q ss_pred             HHcccC--CeEEEEe
Q 047371          170 VSYAKP--GAVVGIS  182 (222)
Q Consensus       170 ~~~Lkp--gG~l~~~  182 (222)
                      .+.||+  |+.+++.
T Consensus       329 g~~lk~~~g~~~~ii  343 (385)
T 3ldu_A          329 GYAFRKLKNWSYYLI  343 (385)
T ss_dssp             HHHHHTSBSCEEEEE
T ss_pred             HHHHhhCCCCEEEEE
Confidence            666666  7777764

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.29  E-value=2.6e-12  Score=106.62  Aligned_cols=119  Identities=12%  Similarity=0.057  Sum_probs=78.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-cCCCCCceeEE--ecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-NNIGPKKIKLH--LVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~  132 (222)
                      ++++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..++..... ... ..++.+.  ..|...+           
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~-~~~v~~~~~~~D~~~l-----------  136 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESY-GWNIVKFKSRVDIHTL-----------  136 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBT-TGGGEEEECSCCTTTS-----------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhcc-CCCeEEEecccCHhHC-----------
Confidence            567899999999999999999887  6899999998 43222211000 000 0145666  5555443           


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc--------H--HHHHHHHHHcccCCe--EEEEecCCCCcHH---HHHHHHH
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP--------L--PQLADHIVSYAKPGA--VVGISGILSEQLP---RIINRYS  197 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~--~~~l~~~~~~LkpgG--~l~~~~~~~~~~~---~~~~~~~  197 (222)
                                   +.++||+|+++.. +.        .  ..+++.+.++|||||  .+++..+. ....   ++...+.
T Consensus       137 -------------~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~-~~~~~~~~~l~~l~  201 (265)
T 2oxt_A          137 -------------PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC-PYSVEVMERLSVMQ  201 (265)
T ss_dssp             -------------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC-TTSHHHHHHHHHHH
T ss_pred             -------------CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC-CCChhHHHHHHHHH
Confidence                         5678999999866 21        1  136888999999999  98886555 3333   4445555


Q ss_pred             hhhhcce
Q 047371          198 EFLEDIL  204 (222)
Q Consensus       198 ~~~~~~~  204 (222)
                      ..|....
T Consensus       202 ~~f~~v~  208 (265)
T 2oxt_A          202 RKWGGGL  208 (265)
T ss_dssp             HHHCCEE
T ss_pred             HHcCCEE
Confidence            5554433

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.28  E-value=4.4e-11  Score=104.46  Aligned_cols=104  Identities=29%  Similarity=0.320  Sum_probs=80.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCC---------------------------------------CEEEEEeCChHHHHH
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMFVGVDIDPQVIKS   96 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~---------------------------------------~~v~gvD~s~~~l~~   96 (222)
                      .+++..|||++||+|.+++.++....                                       .+|+|+|+++.+++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            45688999999999999998876421                                       359999999999999


Q ss_pred             HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHH
Q 047371           97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHI  169 (222)
Q Consensus        97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~  169 (222)
                      |+.|+..+++. .++++...|...+.                       ...+||+|++|||+..       +..+...+
T Consensus       279 Ar~Na~~~gl~-~~I~~~~~D~~~~~-----------------------~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~l  334 (393)
T 3k0b_A          279 AKQNAVEAGLG-DLITFRQLQVADFQ-----------------------TEDEYGVVVANPPYGERLEDEEAVRQLYREM  334 (393)
T ss_dssp             HHHHHHHTTCT-TCSEEEECCGGGCC-----------------------CCCCSCEEEECCCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CceEEEECChHhCC-----------------------CCCCCCEEEECCCCccccCCchhHHHHHHHH
Confidence            99999999886 46888888876542                       3458999999999853       33455555


Q ss_pred             HHcccC--CeEEEEec
Q 047371          170 VSYAKP--GAVVGISG  183 (222)
Q Consensus       170 ~~~Lkp--gG~l~~~~  183 (222)
                      .+.||+  ||.+++.+
T Consensus       335 g~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          335 GIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             HHHHHTCTTCEEEEEE
T ss_pred             HHHHhcCCCCEEEEEE
Confidence            556655  88877743

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.28  E-value=5e-11  Score=96.93  Aligned_cols=115  Identities=21%  Similarity=0.111  Sum_probs=90.5

Q ss_pred             CcchhHHHHHHHHhhh------cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE
Q 047371           41 EHATTKLCLLLLQSLI------KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH  114 (222)
Q Consensus        41 ~~~~~~~~~~~l~~~~------~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  114 (222)
                      .|.+++..+..++.+.      .++.+|||+|||.|.++..+.  +..+|+|+|+++.+++.++.++..++.   +..+.
T Consensus        82 ~H~STrerLp~ld~fY~~i~~~~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~---~~~~~  156 (253)
T 3frh_A           82 LHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW---DFTFA  156 (253)
T ss_dssp             TSHHHHHHGGGHHHHHHHHTSSCCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC---EEEEE
T ss_pred             hCCCHHHHhhhHHHHHHHHhcCCCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC---CceEE
Confidence            5667777766665552      467899999999999999877  678999999999999999999887774   56677


Q ss_pred             ecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHH----HHHHHHHcccCCeEEEEec
Q 047371          115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ----LADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~----~l~~~~~~LkpgG~l~~~~  183 (222)
                      ..|.....                       +.+++|+++++-.++++.+    .+..+...|+++|.++...
T Consensus       157 v~D~~~~~-----------------------~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          157 LQDVLCAP-----------------------PAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             ECCTTTSC-----------------------CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             EeecccCC-----------------------CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            77664332                       4668999999988887654    3447888999999888743

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.27  E-value=3.9e-11  Score=102.04  Aligned_cols=99  Identities=18%  Similarity=0.086  Sum_probs=81.2

Q ss_pred             CcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           60 ELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      .+|||+|||+|..+..+++. +..+++++|+ +.+++.|++++...++. .++++...|....                 
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-----------------  229 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG-ERVSLVGGDMLQE-----------------  229 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT-TSEEEEESCTTTC-----------------
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC-CcEEEecCCCCCC-----------------
Confidence            89999999999999988875 5578999999 99999999988766654 4788888876431                 


Q ss_pred             ccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371          139 HEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             ..++||+|++...+++     ...+++++.+.|||||++++.+.
T Consensus       230 -------~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          230 -------VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             -------CCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             -------CCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                   2357999999888864     23689999999999999998644

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.27  E-value=1.1e-11  Score=108.40  Aligned_cols=127  Identities=20%  Similarity=0.192  Sum_probs=90.7

Q ss_pred             cCCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE
Q 047371           39 TGEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH  114 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  114 (222)
                      .|.+.++..+.+.+...+.  ++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|           .++.+.
T Consensus        18 ~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~   86 (421)
T 2ih2_A           18 LGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGI   86 (421)
T ss_dssp             ---CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEE
T ss_pred             CceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEE
Confidence            4455666667666666543  4679999999999999998875  457999999999888766           256677


Q ss_pred             ecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------------------------------H
Q 047371          115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------------------------L  162 (222)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------------------------~  162 (222)
                      ..|.....                       +.++||+|++|||+..                                +
T Consensus        87 ~~D~~~~~-----------------------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (421)
T 2ih2_A           87 LADFLLWE-----------------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLY  143 (421)
T ss_dssp             ESCGGGCC-----------------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHH
T ss_pred             eCChhhcC-----------------------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHH
Confidence            77654331                       3568999999998732                                1


Q ss_pred             HHHHHHHHHcccCCeEEEEecCC----CCcHHHHHHHHHhh
Q 047371          163 PQLADHIVSYAKPGAVVGISGIL----SEQLPRIINRYSEF  199 (222)
Q Consensus       163 ~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~  199 (222)
                      ..+++.+.++|+|||.+++....    ......+.+.+.+.
T Consensus       144 ~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~  184 (421)
T 2ih2_A          144 GAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLARE  184 (421)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhc
Confidence            14688999999999998885221    23456677666554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.26  E-value=1e-10  Score=101.79  Aligned_cols=104  Identities=22%  Similarity=0.213  Sum_probs=81.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCC---------------------------------------CEEEEEeCChHHHHH
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMFVGVDIDPQVIKS   96 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~---------------------------------------~~v~gvD~s~~~l~~   96 (222)
                      .+++..++|.+||+|.+++.++....                                       .+++|+|+++.+++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            45788999999999999998875421                                       359999999999999


Q ss_pred             HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHH
Q 047371           97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHI  169 (222)
Q Consensus        97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~  169 (222)
                      |++|+..+++. .++++...|...+.                       ...+||+|++|||+..       +..+...+
T Consensus       272 Ar~Na~~~gl~-~~I~~~~~D~~~l~-----------------------~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~l  327 (384)
T 3ldg_A          272 ARKNAREVGLE-DVVKLKQMRLQDFK-----------------------TNKINGVLISNPPYGERLLDDKAVDILYNEM  327 (384)
T ss_dssp             HHHHHHHTTCT-TTEEEEECCGGGCC-----------------------CCCCSCEEEECCCCTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CceEEEECChHHCC-----------------------ccCCcCEEEECCchhhccCCHHHHHHHHHHH
Confidence            99999999986 46889888876552                       3357999999999852       34556666


Q ss_pred             HHcccC--CeEEEEec
Q 047371          170 VSYAKP--GAVVGISG  183 (222)
Q Consensus       170 ~~~Lkp--gG~l~~~~  183 (222)
                      .+.||+  ||.+++.+
T Consensus       328 g~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          328 GETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHTTCTTSEEEEEE
T ss_pred             HHHHhhCCCcEEEEEE
Confidence            666666  88877753

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.26  E-value=2.1e-11  Score=111.29  Aligned_cols=104  Identities=18%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ...+.+|||+|||.|.++..+++.| .+|+|+|.++.+++.|+..+...+..  ++++...+++.+..       ..   
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~g-a~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~~~~~~~~~-------~~---  130 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKG-ATIVGIDFQQENINVCRALAEENPDF--AAEFRVGRIEEVIA-------AL---  130 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTSTTS--EEEEEECCHHHHHH-------HC---
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCC-CEEEEECCCHHHHHHHHHHHHhcCCC--ceEEEECCHHHHhh-------hc---
Confidence            4567899999999999999999997 58999999999999999998877643  68888887765421       01   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHH-----HHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQ-----LADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-----~l~~~~~~LkpgG~l~~~  182 (222)
                                ..++||+|+|..+++|..+     .+..+.+.|.++|..++.
T Consensus       131 ----------~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A          131 ----------EEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             ----------CTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             ----------cCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence                      4678999999999998654     245566777888776664

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.25  E-value=2.4e-11  Score=102.70  Aligned_cols=117  Identities=10%  Similarity=0.065  Sum_probs=77.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeC----ChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDI----DPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTASMNERVD  130 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~  130 (222)
                      ++++.+|||+|||+|.++..+++.  ++|+|+|+    ++.+++.+    ........++.+... |...+         
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~D~~~l---------  144 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI----PMSTYGWNLVRLQSGVDVFFI---------  144 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC----CCCSTTGGGEEEECSCCTTTS---------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH----HhhhcCCCCeEEEeccccccC---------
Confidence            567899999999999999999887  57999999    55433211    011111125666665 44332         


Q ss_pred             cchhccccccccCCCCCCCeeEEEeccccc---c----H--HHHHHHHHHcccCCeEEEEecCCCC--cHHHHHHHHHhh
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLN---P----L--PQLADHIVSYAKPGAVVGISGILSE--QLPRIINRYSEF  199 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~---~----~--~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~  199 (222)
                                     +.++||+|+|+.+.+   +    .  ...+..+.++|||||.+++..+...  ...++...+...
T Consensus       145 ---------------~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~  209 (305)
T 2p41_A          145 ---------------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK  209 (305)
T ss_dssp             ---------------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             ---------------CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHH
Confidence                           456899999987642   1    1  1467888999999999988655442  334555555555


Q ss_pred             hhc
Q 047371          200 LED  202 (222)
Q Consensus       200 ~~~  202 (222)
                      |..
T Consensus       210 f~~  212 (305)
T 2p41_A          210 HGG  212 (305)
T ss_dssp             HCC
T ss_pred             cCC
Confidence            543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.23  E-value=1.7e-10  Score=94.32  Aligned_cols=120  Identities=11%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             CCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           33 PGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        33 ~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      +...|++...........++... ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++....    .++
T Consensus         4 ~~k~~gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~v   78 (244)
T 1qam_A            4 KNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH----DNF   78 (244)
T ss_dssp             ------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC----CSE
T ss_pred             CCccCCccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC----CCe
Confidence            33455553333333333443333 3568899999999999999999886 79999999999999999887532    378


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCC-CCCeeEEEeccccccHHHHHHHHHHcccCCeEEE
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISE-TEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG  180 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~  180 (222)
                      ++...|...+..                      + ...| .|++|+|++....++..+......++.++
T Consensus        79 ~~~~~D~~~~~~----------------------~~~~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~~~l  125 (244)
T 1qam_A           79 QVLNKDILQFKF----------------------PKNQSY-KIFGNIPYNISTDIIRKIVFDSIADEIYL  125 (244)
T ss_dssp             EEECCCGGGCCC----------------------CSSCCC-EEEEECCGGGHHHHHHHHHHSCCCSEEEE
T ss_pred             EEEEChHHhCCc----------------------ccCCCe-EEEEeCCcccCHHHHHHHHhcCCCCeEEE
Confidence            888888765532                      2 2345 68899999876666666655443443333

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.23  E-value=3.6e-11  Score=104.60  Aligned_cols=115  Identities=16%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             chhHHHHHHHHhhhcCCCcEEEEccC------CCHHHHHHHH-h-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE
Q 047371           43 ATTKLCLLLLQSLIKGGELFLDYGTG------SGILGIAAIK-F-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH  114 (222)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~vLD~G~G------~G~~~~~la~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  114 (222)
                      ........++..+..++.+|||+|||      +|..++.+++ + +..+|+|+|+++.+.        . .  ..++++.
T Consensus       201 ~y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~--~~rI~fv  269 (419)
T 3sso_A          201 WFTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-D--ELRIRTI  269 (419)
T ss_dssp             BCHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-C--BTTEEEE
T ss_pred             hHHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-c--CCCcEEE
Confidence            34555666666666678999999999      6665665554 3 668999999999862        1 1  2478999


Q ss_pred             ecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecC
Q 047371          115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      .+|...+.+     ...+.           ...++||+|+++...+.  ....++++.++|||||++++.++
T Consensus       270 ~GDa~dlpf-----~~~l~-----------~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          270 QGDQNDAEF-----LDRIA-----------RRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             ECCTTCHHH-----HHHHH-----------HHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred             Eecccccch-----hhhhh-----------cccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence            998876532     00000           01478999999864322  45679999999999999999644

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.22  E-value=1e-10  Score=96.43  Aligned_cols=113  Identities=17%  Similarity=0.185  Sum_probs=78.5

Q ss_pred             cccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE
Q 047371           35 LAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL  113 (222)
Q Consensus        35 ~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~  113 (222)
                      ..||+........+..++... ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++..  .  .++++
T Consensus         5 k~~GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~--~~v~~   79 (255)
T 3tqs_A            5 KRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--Q--KNITI   79 (255)
T ss_dssp             ----CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--C--TTEEE
T ss_pred             CcCCcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--C--CCcEE
Confidence            344443333334444444443 4578899999999999999999876 7999999999999999998754  1  37889


Q ss_pred             EecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHH
Q 047371          114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVS  171 (222)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~  171 (222)
                      ..+|+..+...                  .+...++|| |++|+|++....++.++..
T Consensus        80 i~~D~~~~~~~------------------~~~~~~~~~-vv~NlPY~is~~il~~ll~  118 (255)
T 3tqs_A           80 YQNDALQFDFS------------------SVKTDKPLR-VVGNLPYNISTPLLFHLFS  118 (255)
T ss_dssp             EESCTTTCCGG------------------GSCCSSCEE-EEEECCHHHHHHHHHHHHH
T ss_pred             EEcchHhCCHH------------------HhccCCCeE-EEecCCcccCHHHHHHHHh
Confidence            99988765320                  011235688 8999999876666655554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.21  E-value=3.7e-11  Score=108.98  Aligned_cols=140  Identities=17%  Similarity=0.181  Sum_probs=98.6

Q ss_pred             cCCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh----C---------------CCEEEEEeCChHHHHHH
Q 047371           39 TGEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF----G---------------AAMFVGVDIDPQVIKSA   97 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~----~---------------~~~v~gvD~s~~~l~~a   97 (222)
                      .|.+.|++.+..++.+.+.  ++.+|+|.|||+|.++..+++.    .               ..+++|+|+++.++..|
T Consensus       148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA  227 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  227 (541)
T ss_dssp             --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence            4667777777777766643  4679999999999998877653    1               13799999999999999


Q ss_pred             HHHHHhcCCCCC---ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH------------
Q 047371           98 HQNAALNNIGPK---KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------------  162 (222)
Q Consensus        98 ~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------------  162 (222)
                      +.++..+++...   +..+...|......                     ....+||+|++|||+...            
T Consensus       228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~---------------------~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~  286 (541)
T 2ar0_A          228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDG---------------------ENLPKAHIVATNPPFGSAAGTNITRTFVHP  286 (541)
T ss_dssp             HHHHHTTTCCCBGGGTBSEEESCTTSHHH---------------------HTSCCEEEEEECCCCTTCSSCCCCSCCSSC
T ss_pred             HHHHHHhCCCccccccCCeEeCCCccccc---------------------ccccCCeEEEECCCcccccchhhHhhcCCC
Confidence            999988776520   15566666532210                     035679999999998642            


Q ss_pred             -----HHHHHHHHHcccCCeEEEEecC-----CCCcHHHHHHHHHhh
Q 047371          163 -----PQLADHIVSYAKPGAVVGISGI-----LSEQLPRIINRYSEF  199 (222)
Q Consensus       163 -----~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~~~~  199 (222)
                           ..+++++.+.|||||++.+...     .......+++.+.+.
T Consensus       287 ~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~  333 (541)
T 2ar0_A          287 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDK  333 (541)
T ss_dssp             CSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhc
Confidence                 2579999999999999887422     122345666666554

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.21  E-value=1.5e-10  Score=99.31  Aligned_cols=100  Identities=13%  Similarity=0.058  Sum_probs=74.4

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|.++..+++. +..+++++|+ +.++.  +++....+.. .++++...|....          +  
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~-~~v~~~~~d~~~~----------~--  245 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVA-GRWKVVEGDFLRE----------V--  245 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGT-TSEEEEECCTTTC----------C--
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCC-CCeEEEecCCCCC----------C--
Confidence            346789999999999999988875 5678999999 44544  3333333433 4788888876311          0  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 +  +||+|++...+++.     ..+++++++.|||||.+++.+.
T Consensus       246 -----------p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          246 -----------P--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             -----------C--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             -----------C--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                       4  89999998888753     4689999999999999998543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.18  E-value=1.1e-10  Score=105.79  Aligned_cols=142  Identities=20%  Similarity=0.164  Sum_probs=103.0

Q ss_pred             cCCcchhHHHHHHHHhhhc------CCCcEEEEccCCCHHHHHHHHh----CCCEEEEEeCChHHHHHHHHHHHhcCCCC
Q 047371           39 TGEHATTKLCLLLLQSLIK------GGELFLDYGTGSGILGIAAIKF----GAAMFVGVDIDPQVIKSAHQNAALNNIGP  108 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~------~~~~vLD~G~G~G~~~~~la~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~  108 (222)
                      .|.+.|++.+.+++...+.      ++.+|+|.+||+|.+...+++.    +..+++|+|+++.++..|+.++..+++..
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  275 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI  275 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence            4667777777777766644      5679999999999988877764    35789999999999999999998888854


Q ss_pred             CceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------H----------
Q 047371          109 KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------L----------  162 (222)
Q Consensus       109 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------~----------  162 (222)
                      .++.+..+|.....+                   +.....+||+|++|||+..                +          
T Consensus       276 ~~~~I~~gDtL~~d~-------------------p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~  336 (542)
T 3lkd_A          276 ENQFLHNADTLDEDW-------------------PTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD  336 (542)
T ss_dssp             GGEEEEESCTTTSCS-------------------CCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH
T ss_pred             CccceEecceecccc-------------------cccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh
Confidence            467777776543210                   0014578999999999732                0          


Q ss_pred             HHHHHHHHHccc-CCeEEEEecC---C--CCcHHHHHHHHHhh
Q 047371          163 PQLADHIVSYAK-PGAVVGISGI---L--SEQLPRIINRYSEF  199 (222)
Q Consensus       163 ~~~l~~~~~~Lk-pgG~l~~~~~---~--~~~~~~~~~~~~~~  199 (222)
                      -.+++++.+.|| +||++.+...   .  ......+++.+.+.
T Consensus       337 ~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~  379 (542)
T 3lkd_A          337 FAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEE  379 (542)
T ss_dssp             HHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhC
Confidence            126899999999 9999876422   1  22345677776654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.17  E-value=1.2e-09  Score=93.89  Aligned_cols=101  Identities=22%  Similarity=0.246  Sum_probs=79.0

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+..+|+|+|||+|.++..+++. +..+++..|. |.+++.|+++....+.  +++++...|.-..              
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~--~rv~~~~gD~~~~--------------  240 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEE--EQIDFQEGDFFKD--------------  240 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--C--CSEEEEESCTTTS--------------
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhccc--CceeeecCccccC--------------
Confidence            45679999999999999988864 6678888887 8899999988765442  5899988876322              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +...+|++++...+|+.     ..+++++++.|+|||.+++.+.
T Consensus       241 ----------~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          241 ----------PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             ----------CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ----------CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence                      34458999998888752     3579999999999999988543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.17  E-value=1.9e-10  Score=95.67  Aligned_cols=114  Identities=15%  Similarity=0.177  Sum_probs=83.3

Q ss_pred             eCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 047371           31 LNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK  109 (222)
Q Consensus        31 ~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~  109 (222)
                      +.+...||+..-.....+..++... ..++ +|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++..     .
T Consensus        19 ~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~-----~   91 (271)
T 3fut_A           19 LFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG-----L   91 (271)
T ss_dssp             CCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT-----S
T ss_pred             CCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC-----C
Confidence            3445566554444444445555444 5567 99999999999999999886 6899999999999999988652     3


Q ss_pred             ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHc
Q 047371          110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSY  172 (222)
Q Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~  172 (222)
                      ++++..+|...+..                     .....+|.|++|+|++....++.++...
T Consensus        92 ~v~vi~~D~l~~~~---------------------~~~~~~~~iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A           92 PVRLVFQDALLYPW---------------------EEVPQGSLLVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             SEEEEESCGGGSCG---------------------GGSCTTEEEEEEECSSCCHHHHHHHHHH
T ss_pred             CEEEEECChhhCCh---------------------hhccCccEEEecCcccccHHHHHHHhcC
Confidence            78899988866532                     0112589999999999876666655554

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.17  E-value=1.8e-12  Score=106.05  Aligned_cols=98  Identities=15%  Similarity=0.247  Sum_probs=74.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..  .  ..++++...|...+..            
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~--~~~v~~~~~D~~~~~~------------   89 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--L--NTRVTLIHQDILQFQF------------   89 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--T--CSEEEECCSCCTTTTC------------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--c--CCceEEEECChhhcCc------------
Confidence            4568899999999999999999886 799999999999999887764  2  1478888888765532            


Q ss_pred             cccccccCCCC-CCCeeEEEeccccccHHHH----H--------------HHHHHcccCCeEEEE
Q 047371          136 LSSHEIRGISE-TEEYDVVIANILLNPLPQL----A--------------DHIVSYAKPGAVVGI  181 (222)
Q Consensus       136 ~~~~~~~~~~~-~~~~D~v~~~~~~~~~~~~----l--------------~~~~~~LkpgG~l~~  181 (222)
                                + .++| .|++|+|++....+    +              +.+.++|+|||.+++
T Consensus        90 ----------~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           90 ----------PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             ----------CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             ----------ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence                      2 3578 88999998753222    2              557777888877665

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.15  E-value=2.4e-10  Score=94.88  Aligned_cols=113  Identities=16%  Similarity=0.100  Sum_probs=76.5

Q ss_pred             CcEEEEccCC---CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc-ccccchh
Q 047371           60 ELFLDYGTGS---GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE-RVDGVVE  134 (222)
Q Consensus        60 ~~vLD~G~G~---G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~  134 (222)
                      .+|||+|||.   |.....+.+ .+..+|+++|.|+.|++.|++++...+.  .++.+...|......-+.. .....  
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~--~~~~~v~aD~~~~~~~l~~~~~~~~--  155 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE--GRTAYVEADMLDPASILDAPELRDT--  155 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS--SEEEEEECCTTCHHHHHTCHHHHTT--
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC--CcEEEEEecccChhhhhcccccccc--
Confidence            6899999997   344433333 3668999999999999999988754332  3788999888654210000 00000  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHH------HHHHHHHHcccCCeEEEEecCCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLP------QLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~------~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                               +-.++++ .|++|..+|++.      .++..+.+.|+|||+++++....
T Consensus       156 ---------~D~~~p~-av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          156 ---------LDLTRPV-ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             ---------CCTTSCC-EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             ---------cCcCCcc-hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence                     0012333 577888888743      48999999999999999986554

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.11  E-value=2.5e-10  Score=95.76  Aligned_cols=110  Identities=13%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             hcCCCcEEEEccCC------CHHHHHHHH-hC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE-EecCCcccccccc
Q 047371           56 IKGGELFLDYGTGS------GILGIAAIK-FG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL-HLVPDRTFTASMN  126 (222)
Q Consensus        56 ~~~~~~vLD~G~G~------G~~~~~la~-~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~  126 (222)
                      ++++.+|||+|||+      |.  ..+++ .+ ..+|+|+|+++.             +.  ++++ ...|...+.    
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~--~v~~~i~gD~~~~~----  119 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VS--DADSTLIGDCATVH----  119 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BC--SSSEEEESCGGGCC----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CC--CCEEEEECccccCC----
Confidence            57789999999955      66  33444 34 479999999997             11  5667 777765432    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEeccccc--------------cHHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--------------PLPQLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                                         ..++||+|++|+..+              .+..+++.+.+.|||||.+++..+......++
T Consensus       120 -------------------~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l  180 (290)
T 2xyq_A          120 -------------------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADL  180 (290)
T ss_dssp             -------------------CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHH
T ss_pred             -------------------ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHH
Confidence                               236799999986422              13478999999999999999976666666688


Q ss_pred             HHHHHhh-hhccee
Q 047371          193 INRYSEF-LEDILV  205 (222)
Q Consensus       193 ~~~~~~~-~~~~~~  205 (222)
                      .+.++.. |..+..
T Consensus       181 ~~~l~~~GF~~v~~  194 (290)
T 2xyq_A          181 YKLMGHFSWWTAFV  194 (290)
T ss_dssp             HHHHTTEEEEEEEE
T ss_pred             HHHHHHcCCcEEEE
Confidence            8888776 655444

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.09  E-value=6.4e-10  Score=91.32  Aligned_cols=115  Identities=14%  Similarity=0.220  Sum_probs=80.4

Q ss_pred             CCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCc
Q 047371           32 NPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK  110 (222)
Q Consensus        32 ~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~  110 (222)
                      .+...||+........+..++... ..++.+|||+|||+|.++..+++.+..+++|+|+++.+++.++++ .     ..+
T Consensus         4 ~~~k~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~-----~~~   77 (249)
T 3ftd_A            4 RLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G-----DER   77 (249)
T ss_dssp             ----CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C-----CTT
T ss_pred             CCCCcccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c-----CCC
Confidence            445566664444444455555444 456889999999999999999988668999999999999999876 1     137


Q ss_pred             eeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcc
Q 047371          111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYA  173 (222)
Q Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~L  173 (222)
                      +++...|+..+...                  +  ....+ .|++|+|++....++.++.+..
T Consensus        78 v~~i~~D~~~~~~~------------------~--~~~~~-~vv~NlPy~i~~~il~~ll~~~  119 (249)
T 3ftd_A           78 LEVINEDASKFPFC------------------S--LGKEL-KVVGNLPYNVASLIIENTVYNK  119 (249)
T ss_dssp             EEEECSCTTTCCGG------------------G--SCSSE-EEEEECCTTTHHHHHHHHHHTG
T ss_pred             eEEEEcchhhCChh------------------H--ccCCc-EEEEECchhccHHHHHHHHhcC
Confidence            88998888765320                  0  01134 8999999988777776666543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.08  E-value=3.3e-10  Score=102.80  Aligned_cols=139  Identities=18%  Similarity=0.104  Sum_probs=99.3

Q ss_pred             cCCcchhHHHHHHHHhhhcCC-CcEEEEccCCCHHHHHHHHh--------C--------CCEEEEEeCChHHHHHHHHHH
Q 047371           39 TGEHATTKLCLLLLQSLIKGG-ELFLDYGTGSGILGIAAIKF--------G--------AAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~~~-~~vLD~G~G~G~~~~~la~~--------~--------~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      .|.+.|++.+.+++...+.+. .+|+|.+||+|.+.+.+++.        .        ..+++|+|+++.++..|+.++
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl  303 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM  303 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred             CCeEeCCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence            467778888888887775442 39999999999988876532        1        358999999999999999999


Q ss_pred             HhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-------------------
Q 047371          102 ALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-------------------  162 (222)
Q Consensus       102 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-------------------  162 (222)
                      ..+++.. ++.+..+|....                     +.....+||+|++|||+...                   
T Consensus       304 ~l~gi~~-~i~i~~gDtL~~---------------------~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~  361 (544)
T 3khk_A          304 VIRGIDF-NFGKKNADSFLD---------------------DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNG  361 (544)
T ss_dssp             HHTTCCC-BCCSSSCCTTTS---------------------CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC-
T ss_pred             HHhCCCc-ccceeccchhcC---------------------cccccccccEEEECCCcCCccccchhhhhhhhhhcCccc
Confidence            8888752 343344443211                     11145689999999998631                   


Q ss_pred             -------------HHHHHHHHHcccCCeEEEEec---CC-C--CcHHHHHHHHHhh
Q 047371          163 -------------PQLADHIVSYAKPGAVVGISG---IL-S--EQLPRIINRYSEF  199 (222)
Q Consensus       163 -------------~~~l~~~~~~LkpgG~l~~~~---~~-~--~~~~~~~~~~~~~  199 (222)
                                   -.+++++.+.|||||++.+..   +. .  .....+++.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~  417 (544)
T 3khk_A          362 EKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQ  417 (544)
T ss_dssp             -CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHT
T ss_pred             ccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhC
Confidence                         147899999999999977642   11 1  2456777776654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.06  E-value=2.2e-09  Score=92.53  Aligned_cols=122  Identities=17%  Similarity=0.200  Sum_probs=89.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCC----CceeEEecCCcccccccccccc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGP----KKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      .++|++|||++||.|.-+..++... ...|+++|+++..++..++++.+.+...    .++.+...|+..+..       
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~-------  218 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE-------  218 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH-------
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch-------
Confidence            5689999999999999999888763 3579999999999999999998776531    256666666544311       


Q ss_pred             cchhccccccccCCCCCCCeeEEEecccccc---------------------------HHHHHHHHHHcccCCeEEEEec
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------------LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                       .             ..+.||.|+++.|+..                           ..+++..+.++|||||+++.++
T Consensus       219 -~-------------~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          219 -L-------------EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             -H-------------STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -h-------------ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence             1             4568999999888642                           1347899999999999988853


Q ss_pred             C--C-CCcHHHHHHHHHh
Q 047371          184 I--L-SEQLPRIINRYSE  198 (222)
Q Consensus       184 ~--~-~~~~~~~~~~~~~  198 (222)
                      .  . .++...+...++.
T Consensus       285 CSl~~~ENE~vV~~~L~~  302 (359)
T 4fzv_A          285 CSLSHLQNEYVVQGAIEL  302 (359)
T ss_dssp             SCCCTTTTHHHHHHHHHH
T ss_pred             CCCchhhCHHHHHHHHHh
Confidence            3  2 3444444444443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.03  E-value=9.4e-09  Score=86.04  Aligned_cols=172  Identities=13%  Similarity=0.127  Sum_probs=114.4

Q ss_pred             eeEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh-
Q 047371           27 TNIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL-  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~-  103 (222)
                      +.+.+|....+.... +.+..++...-....+..++||-+|.|.|..+..+++. +..+++.+|+++.+++.+++.+.. 
T Consensus        51 ~~L~LDg~~q~te~De~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~  130 (294)
T 3o4f_A           51 RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNH  130 (294)
T ss_dssp             EEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHH
T ss_pred             eEEEECCchhhccccHHHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccc
Confidence            445555554443222 22333333322223456789999999999999999886 457899999999999999998743 


Q ss_pred             --cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc-------cHHHHHHHHHHccc
Q 047371          104 --NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-------PLPQLADHIVSYAK  174 (222)
Q Consensus       104 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk  174 (222)
                        ..++..++++...|+..+..                     ...++||+|+.+..-.       ...++++.+.+.|+
T Consensus       131 ~~~~~~dpRv~v~~~Dg~~~l~---------------------~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~  189 (294)
T 3o4f_A          131 NAGSYDDPRFKLVIDDGVNFVN---------------------QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLN  189 (294)
T ss_dssp             HTTGGGCTTEEEEESCTTTTTS---------------------CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEE
T ss_pred             cccccCCCcEEEEechHHHHHh---------------------hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhC
Confidence              12334689999998866531                     1456899999865311       13578999999999


Q ss_pred             CCeEEEEe-cCC---CCcHHHHHHHHHhhhhcc-------eecccCCceEeecccC
Q 047371          175 PGAVVGIS-GIL---SEQLPRIINRYSEFLEDI-------LVSEKDDWRCVSGTKF  219 (222)
Q Consensus       175 pgG~l~~~-~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~w~~~~~~k~  219 (222)
                      |||+++.. +.+   ......+.+.+.+.|...       +....|.|.-..+.|.
T Consensus       190 p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as~~  245 (294)
T 3o4f_A          190 PGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDN  245 (294)
T ss_dssp             EEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEESC
T ss_pred             CCCEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcceeheeEECC
Confidence            99999973 222   233445555566555443       3344688877777654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.03  E-value=5.2e-09  Score=83.13  Aligned_cols=130  Identities=13%  Similarity=0.047  Sum_probs=84.6

Q ss_pred             HHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCC--CCCceeEEecCCccc-cccc
Q 047371           49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI--GPKKIKLHLVPDRTF-TASM  125 (222)
Q Consensus        49 ~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~  125 (222)
                      .++|+..+.+.++|||+||  |+.++.+++...++|+.+|.++...+.|++++...++  . +++++..+++... .+.-
T Consensus        21 ~~~L~~~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-~~I~~~~gda~~~~~wg~   97 (202)
T 3cvo_A           21 AEALRMAYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG-TEVNIVWTDIGPTGDWGH   97 (202)
T ss_dssp             HHHHHHHHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT-CEEEEEECCCSSBCGGGC
T ss_pred             HHHHHHHhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-CceEEEEeCchhhhcccc
Confidence            3344335567889999998  5788888875458999999999999999999999887  4 5899998886432 0100


Q ss_pred             ccccccchhccc-cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          126 NERVDGVVEYLS-SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       126 ~~~~~~~~~~~~-~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      +........... ...+.+....++||+|+++....  ...+..+.++|+|||++++..
T Consensus        98 p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A           98 PVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             BSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETT
T ss_pred             cccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeC
Confidence            000000000000 00000011246899999987543  355666779999999998854

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.02  E-value=1.8e-09  Score=90.09  Aligned_cols=120  Identities=21%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             eCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCC---CEEEEEeCChHHHHHHHHHHHhcCC
Q 047371           31 LNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGA---AMFVGVDIDPQVIKSAHQNAALNNI  106 (222)
Q Consensus        31 ~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~  106 (222)
                      +.+...|++........+..++... ..++.+|||+|||+|.++..+++...   .+|+|+|+++.+++.++++.    .
T Consensus        14 ~~~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~   89 (279)
T 3uzu_A           14 HFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----G   89 (279)
T ss_dssp             ----CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----G
T ss_pred             CCccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----C
Confidence            4455566654443444444444444 46788999999999999999988642   23999999999999999883    1


Q ss_pred             CCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHc
Q 047371          107 GPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSY  172 (222)
Q Consensus       107 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~  172 (222)
                        .++++...|+..+.+.      .+         ... .......|++|+|++....++.++...
T Consensus        90 --~~v~~i~~D~~~~~~~------~~---------~~~-~~~~~~~vv~NlPY~iss~il~~ll~~  137 (279)
T 3uzu_A           90 --ELLELHAGDALTFDFG------SI---------ARP-GDEPSLRIIGNLPYNISSPLLFHLMSF  137 (279)
T ss_dssp             --GGEEEEESCGGGCCGG------GG---------SCS-SSSCCEEEEEECCHHHHHHHHHHHGGG
T ss_pred             --CCcEEEECChhcCChh------Hh---------ccc-ccCCceEEEEccCccccHHHHHHHHhc
Confidence              3788999988765420      00         000 011346899999998777776666543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.01  E-value=1.3e-09  Score=94.26  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=73.0

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|+..        .++++...|.... .            
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~-~------------  259 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDMFDG-V------------  259 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTTC-C------------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCCCCC-C------------
Confidence            34679999999999999988874 6678999999 8887766532        3788888776431 1            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +..  |+|++...+|+.     ..+++++++.|||||.+++.+.
T Consensus       260 ----------p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          260 ----------PKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             ----------CCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             ----------CCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence                      333  999998888742     3579999999999999998644

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.01  E-value=2.8e-09  Score=99.50  Aligned_cols=141  Identities=12%  Similarity=0.053  Sum_probs=90.1

Q ss_pred             cCCcchhHHHHHHHHhh----hc----CCCcEEEEccCCCHHHHHHHHh-C---CCEEEEEeCChHHHHHH--HHHHHhc
Q 047371           39 TGEHATTKLCLLLLQSL----IK----GGELFLDYGTGSGILGIAAIKF-G---AAMFVGVDIDPQVIKSA--HQNAALN  104 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~----~~----~~~~vLD~G~G~G~~~~~la~~-~---~~~v~gvD~s~~~l~~a--~~~~~~~  104 (222)
                      .|.+.++..+..++...    .+    ++.+|||.|||+|.++..+++. +   ..+++|+|+++.+++.|  +.++..+
T Consensus       294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN  373 (878)
T 3s1s_A          294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP  373 (878)
T ss_dssp             CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred             CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence            45566666666655444    22    4779999999999999988864 2   35799999999999999  5554432


Q ss_pred             CCCC--CceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---------------------
Q 047371          105 NIGP--KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------  161 (222)
Q Consensus       105 ~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------  161 (222)
                      .+..  ....+...+.....                     ....++||+|++|||+..                     
T Consensus       374 ~LlhGi~~~~I~~dD~L~~~---------------------~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~  432 (878)
T 3s1s_A          374 QLVSSNNAPTITGEDVCSLN---------------------PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGN  432 (878)
T ss_dssp             TTCBTTBCCEEECCCGGGCC---------------------GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSS
T ss_pred             hhhcCCCcceEEecchhccc---------------------ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccc
Confidence            2221  11122222211100                     013567999999999832                     


Q ss_pred             -----------HHHHHHHHHHcccCCeEEEEec---CCC---CcHHHHHHHHHhhh
Q 047371          162 -----------LPQLADHIVSYAKPGAVVGISG---ILS---EQLPRIINRYSEFL  200 (222)
Q Consensus       162 -----------~~~~l~~~~~~LkpgG~l~~~~---~~~---~~~~~~~~~~~~~~  200 (222)
                                 ...+++.+.++|++||++.+..   +..   .....+++.+.+.+
T Consensus       433 ~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~  488 (878)
T 3s1s_A          433 RPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNF  488 (878)
T ss_dssp             CCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTT
T ss_pred             cccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCC
Confidence                       1236788999999999988742   221   13566777766553

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.01  E-value=1.2e-09  Score=94.29  Aligned_cols=93  Identities=20%  Similarity=0.099  Sum_probs=73.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.        .++++...|.... .            
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~-~------------  265 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL--------SGIEHVGGDMFAS-V------------  265 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTTC-C------------
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc--------CCCEEEeCCcccC-C------------
Confidence            45789999999999999998875 4568999999 8888776541        2577877766331 1            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                +.  ||+|+++..+++.     ..+++++++.|||||.+++.+
T Consensus       266 ----------~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          266 ----------PQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             ----------CC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----------CC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                      32  9999999888763     268999999999999999863

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.00  E-value=2.6e-09  Score=92.25  Aligned_cols=94  Identities=18%  Similarity=0.131  Sum_probs=73.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++..+|||+|||+|..+..+++. +..+++++|+ +.+++.|++.        .++++...|... ..            
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~------------  257 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF--------PGVTHVGGDMFK-EV------------  257 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CC------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc--------CCeEEEeCCcCC-CC------------
Confidence            35689999999999999988864 6678999999 8887766532        378888887643 11            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +.+  |+|++...+|+.     ..+++++++.|||||++++.+.
T Consensus       258 ----------p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          258 ----------PSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             ----------CCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             ----------CCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence                      333  999998888753     3579999999999999998654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.00  E-value=3.8e-09  Score=98.58  Aligned_cols=105  Identities=29%  Similarity=0.335  Sum_probs=78.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhC-------------------------------------------CCEEEEEeCChH
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFG-------------------------------------------AAMFVGVDIDPQ   92 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~-------------------------------------------~~~v~gvD~s~~   92 (222)
                      .+++..++|.+||+|.+++.++...                                           ..+++|+|+++.
T Consensus       188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~  267 (703)
T 3v97_A          188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR  267 (703)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred             CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence            3567899999999999999877531                                           147999999999


Q ss_pred             HHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHH
Q 047371           93 VIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQL  165 (222)
Q Consensus        93 ~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~  165 (222)
                      +++.|+.|+..+++. +.+.+...|...+..       +             ...++||+|++|||+..       +..+
T Consensus       268 av~~A~~N~~~agv~-~~i~~~~~D~~~~~~-------~-------------~~~~~~d~Iv~NPPYG~Rlg~~~~l~~l  326 (703)
T 3v97_A          268 VIQRARTNARLAGIG-ELITFEVKDVAQLTN-------P-------------LPKGPYGTVLSNPPYGERLDSEPALIAL  326 (703)
T ss_dssp             HHHHHHHHHHHTTCG-GGEEEEECCGGGCCC-------S-------------CTTCCCCEEEECCCCCC---CCHHHHHH
T ss_pred             HHHHHHHHHHHcCCC-CceEEEECChhhCcc-------c-------------cccCCCCEEEeCCCccccccchhHHHHH
Confidence            999999999999986 468888888755421       0             01237999999999853       2333


Q ss_pred             H---HHHHHcccCCeEEEE
Q 047371          166 A---DHIVSYAKPGAVVGI  181 (222)
Q Consensus       166 l---~~~~~~LkpgG~l~~  181 (222)
                      .   ..+.+.+.|||.+++
T Consensus       327 y~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          327 HSLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHhhCCCCeEEE
Confidence            3   344445568999887

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.95  E-value=1e-09  Score=96.04  Aligned_cols=85  Identities=15%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             hhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc--CCCCCceeEEecCCccccccccccccc
Q 047371           54 SLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN--NIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        54 ~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      ..+++|.+|||+|||+|..++.+++.+ .+|+++|+++.+++.|+.|+..+  ++.  ++++...|...+..       .
T Consensus        89 ~~l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~--~i~~i~~Da~~~L~-------~  158 (410)
T 3ll7_A           89 RFIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGK--DVNILTGDFKEYLP-------L  158 (410)
T ss_dssp             GGSCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTC--EEEEEESCGGGSHH-------H
T ss_pred             HhcCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCC--cEEEEECcHHHhhh-------h
Confidence            345568999999999999999998875 69999999999999999999887  763  89999988755310       0


Q ss_pred             chhccccccccCCCCCCCeeEEEecccccc
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                      .             +.++||+|+++||+..
T Consensus       159 ~-------------~~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          159 I-------------KTFHPDYIYVDPARRS  175 (410)
T ss_dssp             H-------------HHHCCSEEEECCEEC-
T ss_pred             c-------------cCCCceEEEECCCCcC
Confidence            0             1347999999999754

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.95  E-value=2.3e-09  Score=91.93  Aligned_cols=95  Identities=17%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.        .++++...|.... .           
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~-~-----------  244 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS--------NNLTYVGGDMFTS-I-----------  244 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB--------TTEEEEECCTTTC-C-----------
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC--------CCcEEEeccccCC-C-----------
Confidence            346789999999999999998875 5678999999 9888877641        2577777765321 0           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccC---CeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKP---GAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lkp---gG~l~~~~~  184 (222)
                                 +  .||+|++...+++.     ..+++++.+.|||   ||++++.+.
T Consensus       245 -----------p--~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          245 -----------P--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             -----------C--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             -----------C--CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence                       3  39999998888753     2689999999999   999988644

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.93  E-value=5.7e-10  Score=92.09  Aligned_cols=83  Identities=16%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCCh-------HHHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDP-------QVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~-------~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      .++.+|||+|||+|..++.+++.+ .+|+|+|+++       .+++.|++++..+++. .++++...|...+..      
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-~ri~~~~~d~~~~l~------  153 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-ARINLHFGNAAEQMP------  153 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-TTEEEEESCHHHHHH------
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-cCeEEEECCHHHHHH------
Confidence            457899999999999999999875 6899999999       9999999988777764 258898888754310      


Q ss_pred             ccchhccccccccCCCCC--CCeeEEEecccccc
Q 047371          130 DGVVEYLSSHEIRGISET--EEYDVVIANILLNP  161 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~--~~~D~v~~~~~~~~  161 (222)
                       .+             ++  ++||+|++++++.+
T Consensus       154 -~~-------------~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          154 -AL-------------VKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             -HH-------------HHHHCCCSEEEECCCC--
T ss_pred             -hh-------------hccCCCccEEEECCCCCC
Confidence             00             22  67999999998764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.93  E-value=8.7e-09  Score=93.20  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=97.8

Q ss_pred             cCCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh--------------CCCEEEEEeCChHHHHHHHHHHH
Q 047371           39 TGEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF--------------GAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~--------------~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      .|++.|++.+.+++...+.  ++.+|+|.+||+|.+...+.++              ...+++|+|+++.+...|+.++.
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            4778888888888877754  5679999999999998876542              12469999999999999999998


Q ss_pred             hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------HH
Q 047371          103 LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------LP  163 (222)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------~~  163 (222)
                      .+++..  ..+...+......                  ....+..+||+|++|||+..                   ..
T Consensus       276 lhg~~~--~~I~~~dtL~~~~------------------~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~  335 (530)
T 3ufb_A          276 LHGLEY--PRIDPENSLRFPL------------------REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAM  335 (530)
T ss_dssp             HHTCSC--CEEECSCTTCSCG------------------GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHH
T ss_pred             hcCCcc--ccccccccccCch------------------hhhcccccceEEEecCCCCccccccccccCchhcccchhHH
Confidence            888763  3444555432210                  01113457999999999852                   11


Q ss_pred             HHHHHHHHccc-------CCeEEEEe---cCC--CCcHHHHHHHHHhh
Q 047371          164 QLADHIVSYAK-------PGAVVGIS---GIL--SEQLPRIINRYSEF  199 (222)
Q Consensus       164 ~~l~~~~~~Lk-------pgG~l~~~---~~~--~~~~~~~~~~~~~~  199 (222)
                      .+++++.+.||       +||++.+.   +++  ......+++.+.+.
T Consensus       336 ~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~  383 (530)
T 3ufb_A          336 LFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKN  383 (530)
T ss_dssp             HHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhc
Confidence            35788888887       69997763   211  22334577766654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.93  E-value=6.3e-09  Score=89.33  Aligned_cols=94  Identities=17%  Similarity=0.118  Sum_probs=72.8

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++      .  .++++...|... ..            
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~v~~~~~d~~~-~~------------  249 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N--ENLNFVGGDMFK-SI------------  249 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C--SSEEEEECCTTT-CC------------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C--CCcEEEeCccCC-CC------------
Confidence            46789999999999999998875 5568999999 778766653      1  257777776532 11            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccC---CeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKP---GAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lkp---gG~l~~~~~  184 (222)
                                +  .||+|+++..+++.     ..+++++.+.|||   ||.+++.+.
T Consensus       250 ----------~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          250 ----------P--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             ----------C--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             ----------C--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence                      3  49999999888752     3689999999999   999998544

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.90  E-value=5.2e-09  Score=88.18  Aligned_cols=95  Identities=17%  Similarity=0.282  Sum_probs=70.0

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (222)
                      ++.+++..+ .+++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.|++++..++   .++.+...+...+.. 
T Consensus        14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~~-   89 (301)
T 1m6y_A           14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADF-   89 (301)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHH-
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHHH-
Confidence            334444333 457889999999999999998876 45799999999999999999987766   378898888755421 


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                         .....             ...+||.|++++++..
T Consensus        90 ---~l~~~-------------g~~~~D~Vl~D~gvSs  110 (301)
T 1m6y_A           90 ---LLKTL-------------GIEKVDGILMDLGVST  110 (301)
T ss_dssp             ---HHHHT-------------TCSCEEEEEEECSCCH
T ss_pred             ---HHHhc-------------CCCCCCEEEEcCccch
Confidence               00000             1257999999987653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.88  E-value=7e-09  Score=85.23  Aligned_cols=92  Identities=16%  Similarity=0.207  Sum_probs=65.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCE--EEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAM--FVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..++.+|||+|||+|.++. +++.  .+  |+|+|+++.+++.++++....    .++++..+|+..+.+.      .. 
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~~~--~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~~~------~~-   84 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PVGE--RLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNFG------EL-   84 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HHHT--TCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCHH------HH-
T ss_pred             CCCcCEEEEECCCCcHHHH-hhhC--CCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCCHH------Hh-
Confidence            4578899999999999999 7543  45  999999999999999876432    3788888887655320      00 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHH
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVS  171 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~  171 (222)
                              .+  ..+..+.|++|+|++....++.++..
T Consensus        85 --------~~--~~~~~~~vvsNlPY~i~~~il~~ll~  112 (252)
T 1qyr_A           85 --------AE--KMGQPLRVFGNLPYNISTPLMFHLFS  112 (252)
T ss_dssp             --------HH--HHTSCEEEEEECCTTTHHHHHHHHHT
T ss_pred             --------hc--ccCCceEEEECCCCCccHHHHHHHHh
Confidence                    00  01235899999999876666544443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.83  E-value=1.8e-09  Score=83.24  Aligned_cols=105  Identities=9%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++|.+|||+|||.               +++|+++.+++.|+++...      ++.+...+...+..      .+.   
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~------~~~~~~~d~~~~~~------~~~---   59 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN------EGRVSVENIKQLLQ------SAH---   59 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT------TSEEEEEEGGGGGG------GCC---
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc------CcEEEEechhcCcc------ccC---
Confidence            57899999999996               2389999999999987532      35677776654421      000   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH----HHHHHHHHHcccCCeEEEEecCC---------CCcHHHHHHHHHhh-h
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL----PQLADHIVSYAKPGAVVGISGIL---------SEQLPRIINRYSEF-L  200 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~~~~~~~-~  200 (222)
                                ++++||+|+++..+++.    ..++++++++|||||++++....         .....++.+.+... |
T Consensus        60 ----------~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           60 ----------KESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             ----------CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             ----------CCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence                      46789999998877765    67899999999999999985321         12356777777664 5

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.78  E-value=3e-08  Score=90.98  Aligned_cols=112  Identities=17%  Similarity=0.227  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHhhhc------CCCcEEEEccCCCHHHHHHH---HhCCC--EEEEEeCChHHHHHHHHHHHhcCCCCCcee
Q 047371           44 TTKLCLLLLQSLIK------GGELFLDYGTGSGILGIAAI---KFGAA--MFVGVDIDPQVIKSAHQNAALNNIGPKKIK  112 (222)
Q Consensus        44 ~~~~~~~~l~~~~~------~~~~vLD~G~G~G~~~~~la---~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~  112 (222)
                      +.+++.+.|.....      .+..|+|+|||+|.+....+   +....  +|+|+|-|+ +...|++..+.+++. ++|+
T Consensus       337 Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~-dkVt  414 (637)
T 4gqb_A          337 YQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG-SQVT  414 (637)
T ss_dssp             HHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG-GGEE
T ss_pred             HHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC-CeEE
Confidence            44555555544321      23479999999998855444   33323  689999998 667788888888887 6899


Q ss_pred             EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccc-----cccHHHHHHHHHHcccCCeEEE
Q 047371          113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANIL-----LNPLPQLADHIVSYAKPGAVVG  180 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-----~~~~~~~l~~~~~~LkpgG~l~  180 (222)
                      ++.++.+.+.                       ..+++|+|++-.+     .+.+...+....|.|||||.++
T Consensus       415 VI~gd~eev~-----------------------LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          415 VVSSDMREWV-----------------------APEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEESCTTTCC-----------------------CSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEeCcceecc-----------------------CCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            9999887663                       4578999998543     2335577888899999999865

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.75  E-value=1.6e-07  Score=78.20  Aligned_cols=141  Identities=9%  Similarity=-0.071  Sum_probs=93.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh------CCCEEEEEeCCh--------------------------HHHHHHHHHHHhcC
Q 047371           58 GGELFLDYGTGSGILGIAAIKF------GAAMFVGVDIDP--------------------------QVIKSAHQNAALNN  105 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~------~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~  105 (222)
                      ....|||+|+..|..++.++..      +..+|+++|..+                          ..++.+++++...+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4668999999999988877642      257899999642                          14677899999888


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc-ccHHHHHHHHHHcccCCeEEEEecC
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL-NPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      +..+++++..+++.....       .+             +.++||+|+++.-. .++...++.+...|+|||++++...
T Consensus       186 l~~~~I~li~Gda~etL~-------~~-------------~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLP-------TA-------------PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CCSTTEEEEESCHHHHST-------TC-------------CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCcCceEEEEeCHHHHHh-------hC-------------CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            843589999987744310       01             35689999998755 3456789999999999999999766


Q ss_pred             CC-CcHHHHHHHHHhhhhcceecccCCceEeeccc
Q 047371          185 LS-EQLPRIINRYSEFLEDILVSEKDDWRCVSGTK  218 (222)
Q Consensus       185 ~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k  218 (222)
                      .. ....+..+.+............-+|..+.++|
T Consensus       246 ~~~~G~~~Av~Ef~~~~~i~~~i~~~~~~~v~~rk  280 (282)
T 2wk1_A          246 MMCPPCKDAVDEYRAKFDIADELITIDRDGVYWQR  280 (282)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSCCEECSSSCEEEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCceEEEEecCEEEEEEe
Confidence            32 22222222222222222223334455555555

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.73  E-value=4.8e-08  Score=84.27  Aligned_cols=145  Identities=18%  Similarity=0.138  Sum_probs=95.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc---CCC---CCceeEEecCCcccccccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN---NIG---PKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~---~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      .++++||-+|.|.|..+..+.+++..+++.+|+++.+++.|++.+...   ...   .+++++...|+..+..+..    
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~----  279 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA----  279 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH----
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh----
Confidence            456899999999999999999887789999999999999999876421   111   1346777777644421000    


Q ss_pred             cchhccccccccCCCCCCCeeEEEecccc--------c-----cHHHHHHHHHHcccCCeEEEEe-c--CCCCcHHHHHH
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILL--------N-----PLPQLADHIVSYAKPGAVVGIS-G--ILSEQLPRIIN  194 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~--------~-----~~~~~l~~~~~~LkpgG~l~~~-~--~~~~~~~~~~~  194 (222)
                                    ...++||+|+.+..-        .     ...++++.+.+.|+|||+++.. +  ...+....+.+
T Consensus       280 --------------~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~  345 (381)
T 3c6k_A          280 --------------KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEE  345 (381)
T ss_dssp             --------------HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHH
T ss_pred             --------------hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHH
Confidence                          024679999987421        1     1356789999999999999873 2  22233345555


Q ss_pred             HHHhhhhccee--------cccCCceEeecccC
Q 047371          195 RYSEFLEDILV--------SEKDDWRCVSGTKF  219 (222)
Q Consensus       195 ~~~~~~~~~~~--------~~~~~w~~~~~~k~  219 (222)
                      .+...|..+..        .-.+.|.=..+.|+
T Consensus       346 tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          346 QLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             HHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             HHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            66655433321        11377876666554

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.73  E-value=1.6e-07  Score=77.51  Aligned_cols=134  Identities=10%  Similarity=0.031  Sum_probs=85.0

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      +.++.++. ++++.+|||+|||+|.++..++.. +...+.|+|+.-......... ...+   .++.....+.+..    
T Consensus        63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g---~~ii~~~~~~dv~----  134 (277)
T 3evf_A           63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG---WNIITFKDKTDIH----  134 (277)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT---GGGEEEECSCCTT----
T ss_pred             HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC---CCeEEEeccceeh----
Confidence            33444333 678889999999999999988765 556788888874220000000 0000   0222222222111    


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEeccccc----cH-----HHHHHHHHHcccCC-eEEEEecCC--CCcHHHHH
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLN----PL-----PQLADHIVSYAKPG-AVVGISGIL--SEQLPRII  193 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~----~~-----~~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~  193 (222)
                           .+             +.++||+|+++...+    ..     ..+++.+.+.|+|| |.+++.-+.  .....++.
T Consensus       135 -----~l-------------~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~  196 (277)
T 3evf_A          135 -----RL-------------EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKL  196 (277)
T ss_dssp             -----TS-------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHH
T ss_pred             -----hc-------------CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHH
Confidence                 11             467899999987544    21     13578889999999 999998676  77788888


Q ss_pred             HHHHhhhhcceecc
Q 047371          194 NRYSEFLEDILVSE  207 (222)
Q Consensus       194 ~~~~~~~~~~~~~~  207 (222)
                      +.++..|..+....
T Consensus       197 ~~lk~~F~~V~~~K  210 (277)
T 3evf_A          197 ELLQRRFGGTVIRN  210 (277)
T ss_dssp             HHHHHHHCCEEECC
T ss_pred             HHHHHhcCCEEEEe
Confidence            88888887665543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.71  E-value=1.7e-08  Score=83.45  Aligned_cols=134  Identities=12%  Similarity=0.050  Sum_probs=86.7

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      +.++.+++ ++++.+|||+|||+|.++..++. .+...++|+|+...+...+... ...+   .++.....+.+..    
T Consensus        79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g---~~ii~~~~~~dv~----  150 (282)
T 3gcz_A           79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG---WNLIRFKDKTDVF----  150 (282)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT---GGGEEEECSCCGG----
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC---CceEEeeCCcchh----
Confidence            44444444 67888999999999999998875 4667899999976421111000 0001   1222111111111    


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEecccccc-------H--HHHHHHHHHcccCC--eEEEEecCC--CCcHHHH
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------L--PQLADHIVSYAKPG--AVVGISGIL--SEQLPRI  192 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~--~~~l~~~~~~Lkpg--G~l~~~~~~--~~~~~~~  192 (222)
                           .+             +..++|+|+|+...+.       .  ..+++-+.+.|+||  |.+++.-+.  .....++
T Consensus       151 -----~l-------------~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l  212 (282)
T 3gcz_A          151 -----NM-------------EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEE  212 (282)
T ss_dssp             -----GS-------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHH
T ss_pred             -----hc-------------CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHH
Confidence                 11             5678999999876541       1  13578888999999  999998776  7788888


Q ss_pred             HHHHHhhhhcceecc
Q 047371          193 INRYSEFLEDILVSE  207 (222)
Q Consensus       193 ~~~~~~~~~~~~~~~  207 (222)
                      .+.++..|..+....
T Consensus       213 ~~~lk~~F~~V~~~K  227 (282)
T 3gcz_A          213 LSRLQLKHGGGLVRV  227 (282)
T ss_dssp             HHHHHHHHCCEEECC
T ss_pred             HHHHHHhcCCEEEEc
Confidence            888888887665543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.67  E-value=7.5e-08  Score=88.71  Aligned_cols=117  Identities=15%  Similarity=0.214  Sum_probs=77.6

Q ss_pred             hHHHHHHHHhhhcC---CCcEEEEccCCCHHHHHH---HH-hC----------CCEEEEEeCChHHHHHHHHHHHhcCCC
Q 047371           45 TKLCLLLLQSLIKG---GELFLDYGTGSGILGIAA---IK-FG----------AAMFVGVDIDPQVIKSAHQNAALNNIG  107 (222)
Q Consensus        45 ~~~~~~~l~~~~~~---~~~vLD~G~G~G~~~~~l---a~-~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~  107 (222)
                      .+.+...+..+.+.   ++.|||+|||+|.++...   ++ .+          ..+|+|+|-|+.++..++.... +++.
T Consensus       393 ~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~  471 (745)
T 3ua3_A          393 GEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK  471 (745)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT
T ss_pred             HHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC
Confidence            34444444444332   458999999999986533   22 11          2489999999977766555443 6776


Q ss_pred             CCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc-----cHHHHHHHHHHcccCCeEEE
Q 047371          108 PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-----PLPQLADHIVSYAKPGAVVG  180 (222)
Q Consensus       108 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~LkpgG~l~  180 (222)
                       ++|+++.++.+.+..-.     +.            ...+++|+|++-.+-.     .....+..+.+.|||||.++
T Consensus       472 -d~VtVI~gd~eev~lp~-----~~------------~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          472 -RRVTIIESDMRSLPGIA-----KD------------RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             -TCSEEEESCGGGHHHHH-----HH------------TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             -CeEEEEeCchhhccccc-----cc------------CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence             57999999887663200     00            0257899999965422     34568888889999999765

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.57  E-value=6.3e-08  Score=79.77  Aligned_cols=97  Identities=15%  Similarity=0.116  Sum_probs=65.1

Q ss_pred             cCC--CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-------cC-CCCCceeEEecCCcccccccc
Q 047371           57 KGG--ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-------NN-IGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        57 ~~~--~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~-~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      +++  .+|||+|||+|..++.+++.+ .+|+++|.++.+...++.++..       ++ +. .++++...|...+.    
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~-~~i~~~~~D~~~~L----  158 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQ-ERLQLIHASSLTAL----  158 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHH-HHEEEEESCHHHHS----
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhh-cCEEEEECCHHHHH----
Confidence            567  899999999999999999886 4799999999876666665532       12 21 36788888765431    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEeccccccH--HHHHHHHHHcccCC
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL--PQLADHIVSYAKPG  176 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~--~~~l~~~~~~Lkpg  176 (222)
                                     ..  ...+||+|+++|++...  ...+++..+.|++.
T Consensus       159 ---------------~~--~~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l  193 (258)
T 2oyr_A          159 ---------------TD--ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSL  193 (258)
T ss_dssp             ---------------TT--CSSCCSEEEECCCCCCCCC-----HHHHHHHHH
T ss_pred             ---------------Hh--CcccCCEEEEcCCCCCcccchHHHHHHHHHHHh
Confidence                           00  12369999999998652  22344444555443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.43  E-value=6.8e-07  Score=74.30  Aligned_cols=127  Identities=12%  Similarity=0.071  Sum_probs=82.6

Q ss_pred             hhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           55 LIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        55 ~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++++.+|||+||++|.++..+++. +...|+|+|+.......... ....+   .++.......+..            
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~---~~iv~~~~~~di~------------  141 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG---WNIVKFKDKSNVF------------  141 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT---GGGEEEECSCCTT------------
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC---CceEEeecCceee------------
Confidence            3678999999999999999999974 66689999996531000000 00000   0111111111111            


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---------HHHHHHHHHHcccCC-eEEEEecCC--CCcHHHHHHHHHhhhh
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---------LPQLADHIVSYAKPG-AVVGISGIL--SEQLPRIINRYSEFLE  201 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------~~~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~~~  201 (222)
                               .+ ...++|+|+++...+.         ...+++-+.+.|+|| |.+++.-+.  .....++...+...|.
T Consensus       142 ---------~l-~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~  211 (300)
T 3eld_A          142 ---------TM-PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFG  211 (300)
T ss_dssp             ---------TS-CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHC
T ss_pred             ---------ec-CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCC
Confidence                     11 4568999999765441         123578888999999 999998777  7788888888888887


Q ss_pred             cceecc
Q 047371          202 DILVSE  207 (222)
Q Consensus       202 ~~~~~~  207 (222)
                      .+....
T Consensus       212 ~V~~~K  217 (300)
T 3eld_A          212 GGIVRV  217 (300)
T ss_dssp             CEEECC
T ss_pred             cEEEEe
Confidence            665543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.32  E-value=4.1e-06  Score=62.65  Aligned_cols=103  Identities=13%  Similarity=-0.004  Sum_probs=65.6

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCC-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSG-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      ...+.+.+.+...++.+|||+|||+| ..+..|++.....|+++|+++.+++                 +...|.-....
T Consensus        22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-----------------~v~dDiF~P~~   84 (153)
T 2k4m_A           22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-----------------IVRDDITSPRM   84 (153)
T ss_dssp             HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-----------------EECCCSSSCCH
T ss_pred             HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-----------------eEEccCCCCcc
Confidence            33445555555566789999999999 6999999743468999999996655                 33333211100


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEE-EeccccccHHHHHHHHHHcccCCeEEEEecCCCCc
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVV-IANILLNPLPQLADHIVSYAKPGAVVGISGILSEQ  188 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (222)
                                           ...+.||+| ..|||.+-...+++ +++  +-|.-+++..+..+.
T Consensus        85 ---------------------~~Y~~~DLIYsirPP~El~~~i~~-lA~--~v~adliI~pL~~E~  126 (153)
T 2k4m_A           85 ---------------------EIYRGAALIYSIRPPAEIHSSLMR-VAD--AVGARLIIKPLTGED  126 (153)
T ss_dssp             ---------------------HHHTTEEEEEEESCCTTTHHHHHH-HHH--HHTCEEEEECBTTBC
T ss_pred             ---------------------cccCCcCEEEEcCCCHHHHHHHHH-HHH--HcCCCEEEEcCCCCc
Confidence                                 012479999 56888875554544 333  345567776555444

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.29  E-value=1.8e-06  Score=70.34  Aligned_cols=119  Identities=11%  Similarity=0.031  Sum_probs=69.7

Q ss_pred             hhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCC--Cce---eEEec-CCccccccccc
Q 047371           55 LIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGP--KKI---KLHLV-PDRTFTASMNE  127 (222)
Q Consensus        55 ~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~v---~~~~~-~~~~~~~~~~~  127 (222)
                      +++|+.+|+|+||+.|..+..+++. +-..|.|.++....        ....+..  ..+   .+..+ |....      
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--------~~~P~~~~~~Gv~~i~~~~G~Df~~~------  135 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--------HEEPMLMQSYGWNIVTMKSGVDVFYK------  135 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--------SCCCCCCCSTTGGGEEEECSCCGGGS------
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--------ccCCCcccCCCceEEEeeccCCccCC------
Confidence            3789999999999999999998875 22233444443210        0011110  122   22223 43221      


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecccccc-------H--HHHHHHHHHcccCCe-EEEEecCCC--CcHHHHHHH
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------L--PQLADHIVSYAKPGA-VVGISGILS--EQLPRIINR  195 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~--~~~l~~~~~~LkpgG-~l~~~~~~~--~~~~~~~~~  195 (222)
                                        +..++|+|+|+..-..       .  ...++-+.+.|+||| .+++.-+..  ....++.+.
T Consensus       136 ------------------~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~  197 (269)
T 2px2_A          136 ------------------PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLES  197 (269)
T ss_dssp             ------------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHH
T ss_pred             ------------------CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHH
Confidence                              4567999999764321       1  125677779999999 888865553  334444556


Q ss_pred             HHhhhhccee
Q 047371          196 YSEFLEDILV  205 (222)
Q Consensus       196 ~~~~~~~~~~  205 (222)
                      ++..|....+
T Consensus       198 lk~~F~~vkv  207 (269)
T 2px2_A          198 LQRRFGGGLV  207 (269)
T ss_dssp             HHHHHCCEEE
T ss_pred             HHHHcCCEEE
Confidence            6666655543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.28  E-value=3e-06  Score=70.20  Aligned_cols=91  Identities=18%  Similarity=0.273  Sum_probs=67.2

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      ++.+++..+ .+++..++|.+||.|..+..+++. ..+|+|+|.++.+++.|++ +..     +++.++..+...+..  
T Consensus        10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l~~--   80 (285)
T 1wg8_A           10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHLKR--   80 (285)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGHHH--
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchHHH--
Confidence            344444444 567889999999999999999887 5799999999999999988 533     378898888765521  


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                        .+...             ..+++|.|++++.+..
T Consensus        81 --~L~~~-------------g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           81 --HLAAL-------------GVERVDGILADLGVSS  101 (285)
T ss_dssp             --HHHHT-------------TCSCEEEEEEECSCCH
T ss_pred             --HHHHc-------------CCCCcCEEEeCCcccc
Confidence              01111             3357999999887654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.27  E-value=2.3e-06  Score=70.30  Aligned_cols=123  Identities=13%  Similarity=0.082  Sum_probs=75.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHH--------hCC-----CEEEEEeCCh---HHHH-----------HHHHHHHhcC-----
Q 047371           58 GGELFLDYGTGSGILGIAAIK--------FGA-----AMFVGVDIDP---QVIK-----------SAHQNAALNN-----  105 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~--------~~~-----~~v~gvD~s~---~~l~-----------~a~~~~~~~~-----  105 (222)
                      ++.+|||+|+|+|..+..+++        .+.     .+++++|..|   ..+.           .|+..+....     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            346899999999988776543        221     4899999887   4444           4455444311     


Q ss_pred             -----CC--CCceeEEecCCcccccccccccccchhccccccccCCC--CCCCeeEEEecccc---c---cHHHHHHHHH
Q 047371          106 -----IG--PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGIS--ETEEYDVVIANILL---N---PLPQLADHIV  170 (222)
Q Consensus       106 -----~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v~~~~~~---~---~~~~~l~~~~  170 (222)
                           +.  ..++++..+|+.....                   .+.  ...+||+|+.++.-   +   +..++++.+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~-------------------~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~  200 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELIS-------------------QLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMA  200 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGG-------------------GSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHH
T ss_pred             hhheeccCCceEEEEEECcHHHHHh-------------------hcccccCCeEEEEEECCCCcccChhhcCHHHHHHHH
Confidence                 11  1245566666543210                   000  12379999997521   1   2567999999


Q ss_pred             HcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcc
Q 047371          171 SYAKPGAVVGISGILSEQLPRIINRYSEF-LEDI  203 (222)
Q Consensus       171 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~  203 (222)
                      ++|+|||.++..+.    ...+...+... |...
T Consensus       201 ~~L~pGG~l~tysa----a~~vrr~L~~aGF~v~  230 (257)
T 2qy6_A          201 RLARPGGTLATFTS----AGFVRRGLQEAGFTMQ  230 (257)
T ss_dssp             HHEEEEEEEEESCC----BHHHHHHHHHHTEEEE
T ss_pred             HHcCCCcEEEEEeC----CHHHHHHHHHCCCEEE
Confidence            99999999987432    12455555554 6543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.25  E-value=1.9e-05  Score=67.86  Aligned_cols=97  Identities=11%  Similarity=0.090  Sum_probs=65.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++|+++||+||++|.++..+++.+ .+|+|+|..+-.-     .+...    .++++...|...+..            
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~l~~-----~l~~~----~~V~~~~~d~~~~~~------------  266 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGPMAQ-----SLMDT----GQVTWLREDGFKFRP------------  266 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSCCCH-----HHHTT----TCEEEECSCTTTCCC------------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhhcCh-----hhccC----CCeEEEeCccccccC------------
Confidence            5689999999999999999999886 6899999865211     11111    377788777654421            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH--HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL--PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +.+++|+|+|+...++.  ..++.........++.++...+
T Consensus       267 ----------~~~~~D~vvsDm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL  307 (375)
T 4auk_A          267 ----------TRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKL  307 (375)
T ss_dssp             ----------CSSCEEEEEECCSSCHHHHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred             ----------CCCCcCEEEEcCCCChHHhHHHHHHHHhccccceEEEEEEe
Confidence                      45689999999877642  2234444444444566555434

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.23  E-value=9.3e-06  Score=68.87  Aligned_cols=71  Identities=20%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +-++.+.+..+ +++|..++|..||.|..+..+++.  +.++|+|+|.++.+++.|+ ++     ...++.++..+...+
T Consensus        43 pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-----~~~Rv~lv~~nF~~l  116 (347)
T 3tka_A           43 TVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-----DDPRFSIIHGPFSAL  116 (347)
T ss_dssp             CTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-----CCTTEEEEESCGGGH
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-----cCCcEEEEeCCHHHH
Confidence            34555666555 578999999999999999988875  4579999999999999984 33     124788888877554

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.17  E-value=4.6e-05  Score=61.35  Aligned_cols=126  Identities=10%  Similarity=0.011  Sum_probs=76.8

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccc
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTAS  124 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~  124 (222)
                      +.++.+++ ++++..|+|+||++|.++..++. .+..+|+|+|+...--+.= ......|.+  .++|... |....   
T Consensus        67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn--~v~fk~gvDv~~~---  140 (267)
T 3p8z_A           67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWN--IVKLMSGKDVFYL---  140 (267)
T ss_dssp             HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTT--SEEEECSCCGGGC---
T ss_pred             HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcC--ceEEEeccceeec---
Confidence            34444444 67889999999999999997665 4667899999976321000 000112222  4566655 43222   


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc---------HHHHHHHHHHcccCCeEEEEecCCCCc--HHHHH
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------LPQLADHIVSYAKPGAVVGISGILSEQ--LPRII  193 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~  193 (222)
                                           +..++|+|+|+..-..         ....++.+.+.|++ |-+++.-+....  ..+..
T Consensus       141 ---------------------~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l  198 (267)
T 3p8z_A          141 ---------------------PPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHL  198 (267)
T ss_dssp             ---------------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHH
T ss_pred             ---------------------CCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHH
Confidence                                 4577999999754322         12267888899999 677765444444  44555


Q ss_pred             HHHHhhhh
Q 047371          194 NRYSEFLE  201 (222)
Q Consensus       194 ~~~~~~~~  201 (222)
                      +.++..|.
T Consensus       199 ~~lq~~fg  206 (267)
T 3p8z_A          199 ERLQRKHG  206 (267)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            55555443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.13  E-value=6.7e-06  Score=68.77  Aligned_cols=58  Identities=28%  Similarity=0.357  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      .++..++.....+++.|||++||+|.+++.+++.+ .+++|+|+++.+++.|++++...
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            45555555545689999999999999999998886 68999999999999999998654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.07  E-value=3.5e-05  Score=63.94  Aligned_cols=128  Identities=9%  Similarity=0.002  Sum_probs=75.0

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccc
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTAS  124 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~  124 (222)
                      +.++..++ ++++..|||+||++|.++..++. .+...|+|+|+...--+.= ......+.  ..+.+... |+..+   
T Consensus        83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w--~lV~~~~~~Dv~~l---  156 (321)
T 3lkz_A           83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW--NIVTMKSGVDVFYR---  156 (321)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG--GGEEEECSCCTTSS---
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC--cceEEEeccCHhhC---
Confidence            34444444 67888999999999999996665 4667899999976311000 00001111  12333333 22222   


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc---------HHHHHHHHHHcccCC-eEEEEecCCC--CcHHHH
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------LPQLADHIVSYAKPG-AVVGISGILS--EQLPRI  192 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------~~~~l~~~~~~Lkpg-G~l~~~~~~~--~~~~~~  192 (222)
                                           +..++|+|+|+..-..         ....|+.+.+.|+++ |-+++.-+..  ....+.
T Consensus       157 ---------------------~~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~  215 (321)
T 3lkz_A          157 ---------------------PSECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEK  215 (321)
T ss_dssp             ---------------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHH
T ss_pred             ---------------------CCCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHH
Confidence                                 3467999999876321         112677778899999 8777753433  444455


Q ss_pred             HHHHHhhhhc
Q 047371          193 INRYSEFLED  202 (222)
Q Consensus       193 ~~~~~~~~~~  202 (222)
                      .+.++..|..
T Consensus       216 l~~lq~~fgg  225 (321)
T 3lkz_A          216 MELLQRRYGG  225 (321)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            5555555433

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.06  E-value=2.1e-05  Score=68.12  Aligned_cols=105  Identities=13%  Similarity=-0.017  Sum_probs=65.7

Q ss_pred             CCcEEEEccCCCHHHHHHHHh------------------CCCEEEEEeCC-----------hHHHHHHHHHHHhcCCCCC
Q 047371           59 GELFLDYGTGSGILGIAAIKF------------------GAAMFVGVDID-----------PQVIKSAHQNAALNNIGPK  109 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~------------------~~~~v~gvD~s-----------~~~l~~a~~~~~~~~~~~~  109 (222)
                      ..+|+|+||++|..++.+...                  +.-+|+..|+-           +...+.+++   ..+-. .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~-~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRK-I  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCC-T
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCC-C
Confidence            468999999999888866532                  22468888886           333333222   11211 1


Q ss_pred             ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHH-------------------------
Q 047371          110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ-------------------------  164 (222)
Q Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-------------------------  164 (222)
                      +.-|..+....|-                   ..+.+.+++|+++++..+||+.+                         
T Consensus       129 ~~~f~~gvpgSFy-------------------~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp  189 (384)
T 2efj_A          129 GSCLIGAMPGSFY-------------------SRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASR  189 (384)
T ss_dssp             TSEEEEECCSCTT-------------------SCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSC
T ss_pred             CceEEEecchhhh-------------------hccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCC
Confidence            2234444444331                   11237899999999998887321                         


Q ss_pred             -----------------HHHHHHHcccCCeEEEEecCCC
Q 047371          165 -----------------LADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       165 -----------------~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                       +|+..++.|+|||.+++.....
T Consensus       190 ~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr  228 (384)
T 2efj_A          190 PPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICK  228 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecC
Confidence                             2555589999999999975543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.06  E-value=1.2e-05  Score=65.97  Aligned_cols=61  Identities=26%  Similarity=0.370  Sum_probs=49.7

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCC
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI  106 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~  106 (222)
                      ..++..++.....+|+.|||.+||+|..+..+.+.+ .+++|+|+++..++.|++++..+++
T Consensus       199 ~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          199 RDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhccC
Confidence            355556665556789999999999999999988886 6899999999999999999876553

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.02  E-value=7.1e-06  Score=68.00  Aligned_cols=110  Identities=9%  Similarity=0.107  Sum_probs=78.1

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ....+..+  .+..+||+.+|||.+++.+.+. ..+++.+|.++..++..++|+..    .+++.+...|......    
T Consensus        83 yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~~L~----  151 (283)
T 2oo3_A           83 YISVIKQI--NLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVSKLN----  151 (283)
T ss_dssp             HHHHHHHH--SSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHHHHH----
T ss_pred             HHHHHHHh--cCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHHHHH----
Confidence            44444443  4677999999999999998884 48999999999999999988754    1467787777533210    


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHH--cccCCeEEEEe
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVS--YAKPGAVVGIS  182 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~--~LkpgG~l~~~  182 (222)
                         .+           ..+..+||+|+++||+..   +..+++.+.+  .+.++|.+++-
T Consensus       152 ---~l-----------~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~W  197 (283)
T 2oo3_A          152 ---AL-----------LPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVW  197 (283)
T ss_dssp             ---HH-----------CSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             ---Hh-----------cCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEE
Confidence               00           013457999999999983   4455544444  46788888874

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.94  E-value=3.2e-05  Score=66.85  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=32.9

Q ss_pred             CCCCeeEEEeccccccHH-----------------------------------------HHHHHHHHcccCCeEEEEecC
Q 047371          146 ETEEYDVVIANILLNPLP-----------------------------------------QLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~~~-----------------------------------------~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      +.+++|+|+++..+|++.                                         .+++..++.|+|||.++++..
T Consensus       147 P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          147 PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            788999999999888743                                         247788999999999998644


Q ss_pred             C
Q 047371          185 L  185 (222)
Q Consensus       185 ~  185 (222)
                      .
T Consensus       227 g  227 (374)
T 3b5i_A          227 G  227 (374)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.77  E-value=0.00042  Score=59.34  Aligned_cols=86  Identities=9%  Similarity=0.028  Sum_probs=64.4

Q ss_pred             eCCCcccccCCcchhHHHHHHHHhh-hc------CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHH
Q 047371           31 LNPGLAFGTGEHATTKLCLLLLQSL-IK------GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        31 ~~~~~~f~~~~~~~~~~~~~~l~~~-~~------~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      ..+...||+..-.....+..+++.. +.      +++.|||+|.|.|.+|..|++. ...+++++|+++..+...++.. 
T Consensus        24 ~~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-  102 (353)
T 1i4w_A           24 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-  102 (353)
T ss_dssp             CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-
T ss_pred             cCCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-
Confidence            3456677776665666666665554 33      3589999999999999999875 4578999999999998887765 


Q ss_pred             hcCCCCCceeEEecCCccc
Q 047371          103 LNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~  121 (222)
                      .    .++++++..|+..+
T Consensus       103 ~----~~~l~ii~~D~l~~  117 (353)
T 1i4w_A          103 E----GSPLQILKRDPYDW  117 (353)
T ss_dssp             T----TSSCEEECSCTTCH
T ss_pred             c----CCCEEEEECCccch
Confidence            2    24788999888544

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.60  E-value=0.0005  Score=57.12  Aligned_cols=110  Identities=10%  Similarity=0.125  Sum_probs=68.6

Q ss_pred             hcCCCcEEEEcc------CCCHHHHHHHHh-CC-CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           56 IKGGELFLDYGT------GSGILGIAAIKF-GA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        56 ~~~~~~vLD~G~------G~G~~~~~la~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ++-+++|||+|+      .+|+.  .+.+. +. +.++++|+.+-.           ..  .. .++.+|.....     
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sd--a~-~~IqGD~~~~~-----  165 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SD--AD-STLIGDCATVH-----  165 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CS--SS-EEEESCGGGEE-----
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cC--CC-eEEEccccccc-----
Confidence            567899999997      55663  44444 32 499999998722           11  12 24566643321     


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccc-------------cH-HHHHHHHHHcccCCeEEEEecCCCCcHHHHH
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLN-------------PL-PQLADHIVSYAKPGAVVGISGILSEQLPRII  193 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-------------~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (222)
                                        ..++||+|+++..-.             .+ +..++-+.+.|+|||.+++.-+.....+.+.
T Consensus       166 ------------------~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~  227 (344)
T 3r24_A          166 ------------------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLY  227 (344)
T ss_dssp             ------------------ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHH
T ss_pred             ------------------cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHH
Confidence                              347899999975421             12 3356778889999999999766555544444


Q ss_pred             HHHHhhhhccee
Q 047371          194 NRYSEFLEDILV  205 (222)
Q Consensus       194 ~~~~~~~~~~~~  205 (222)
                      + +...|..+..
T Consensus       228 ~-lrk~F~~VK~  238 (344)
T 3r24_A          228 K-LMGHFSWWTA  238 (344)
T ss_dssp             H-HHTTEEEEEE
T ss_pred             H-HHhhCCeEEE
Confidence            3 4446554443

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.51  E-value=5.8e-05  Score=64.82  Aligned_cols=105  Identities=11%  Similarity=0.036  Sum_probs=68.0

Q ss_pred             CcEEEEccCCCHHHHHHHHh-----------------CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           60 ELFLDYGTGSGILGIAAIKF-----------------GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~-----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      .+|+|+||++|..++.+...                 +.-+|+..|+.....+.+-+.+....-. .+.-+..+....+-
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~-~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV-DGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC-TTCEEEEEEESCSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhccc-CCCEEEEecchhhh
Confidence            57999999999766543321                 2357899999888877776665431100 01223333322221


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEeccccccHH------------------------------------HHH
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP------------------------------------QLA  166 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~------------------------------------~~l  166 (222)
                                         ..+.+.+++|+++++..+||+.                                    .+|
T Consensus       132 -------------------~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL  192 (359)
T 1m6e_X          132 -------------------GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFL  192 (359)
T ss_dssp             -------------------SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHH
T ss_pred             -------------------hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence                               1123788999999998877632                                    247


Q ss_pred             HHHHHcccCCeEEEEecC
Q 047371          167 DHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~  184 (222)
                      +..++.|+|||.+++...
T Consensus       193 ~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          193 RCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             HHHHHHBCTTCEEEEEEE
T ss_pred             HHHHHHhcCCceEEEEEe
Confidence            888999999999998643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.39  E-value=0.00039  Score=58.73  Aligned_cols=60  Identities=22%  Similarity=0.325  Sum_probs=50.4

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCC
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI  106 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~  106 (222)
                      .++..++.....+|+.|||..||+|..+..+.+.+ .+.+|+|+++..++.+++++...+.
T Consensus       240 ~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          240 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhccc
Confidence            55666665556789999999999999999988886 6899999999999999998865543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.24  E-value=0.00068  Score=57.23  Aligned_cols=60  Identities=22%  Similarity=0.260  Sum_probs=47.6

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCCh---HHHHHHHHHHHhcC
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDP---QVIKSAHQNAALNN  105 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~---~~l~~a~~~~~~~~  105 (222)
                      ..++..++.....+|+.|||..||+|..+..+.+.+ .+.+|+|+++   ..++.+++++...+
T Consensus       229 ~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          229 AAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            445555555556789999999999999999988886 6899999999   99999999887554

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.15  E-value=0.0032  Score=53.30  Aligned_cols=44  Identities=23%  Similarity=0.198  Sum_probs=39.4

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH
Q 047371           59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      +.+++|++||.|.++.-+.+.|...+.++|+++.+++..+.|..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            56899999999999999888888889999999999988888763

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.05  E-value=0.0045  Score=53.33  Aligned_cols=81  Identities=19%  Similarity=0.146  Sum_probs=56.5

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      .+++|++||.|.++.-+.+.|...+.++|+++.+++..+.|..       +..+...|...+...  . ...        
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-------~~~~~~~DI~~~~~~--~-~~~--------   64 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-------RSLHVQEDVSLLNAE--I-IKG--------   64 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-------TSEEECCCGGGCCHH--H-HHH--------
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-------CCceEecChhhcCHH--H-HHh--------
Confidence            4799999999999999888888888999999999888877642       334555565443210  0 000        


Q ss_pred             cccCCCCCCCeeEEEecccccc
Q 047371          140 EIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                         .......+|+++..+|+..
T Consensus        65 ---~~~~~~~~D~i~ggpPCQ~   83 (376)
T 3g7u_A           65 ---FFKNDMPIDGIIGGPPCQG   83 (376)
T ss_dssp             ---HHCSCCCCCEEEECCCCCT
T ss_pred             ---hcccCCCeeEEEecCCCCC
Confidence               0002457999999999754

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.03  E-value=0.0008  Score=57.32  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=53.2

Q ss_pred             CCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ..+++|++||.|.+++-+.+.+  ...++++|+++.+++..+.|...       ..+...|...+..      ..+    
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-------~~~~~~Di~~~~~------~~~----   64 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-------TQLLAKTIEGITL------EEF----   64 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-------SCEECSCGGGCCH------HHH----
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-------cccccCCHHHccH------hHc----
Confidence            3579999999999999888877  46899999999999998887632       2244555543311      000    


Q ss_pred             ccccccCCCCCCCeeEEEecccccc
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                               +...+|+++..+|+..
T Consensus        65 ---------~~~~~D~l~~gpPCq~   80 (343)
T 1g55_A           65 ---------DRLSFDMILMSPPCQP   80 (343)
T ss_dssp             ---------HHHCCSEEEECCC---
T ss_pred             ---------CcCCcCEEEEcCCCcc
Confidence                     1125899999999654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.83  E-value=0.0057  Score=49.95  Aligned_cols=127  Identities=13%  Similarity=0.107  Sum_probs=76.4

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--------CCCEEEEEeCChHH---------------------------HHHH---H
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--------GAAMFVGVDIDPQV---------------------------IKSA---H   98 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--------~~~~v~gvD~s~~~---------------------------l~~a---~   98 (222)
                      .-.-.|+|+|+-.|..+..++..        ...+++++|.-..+                           +...   .
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            33457999999999877765531        24789999932111                           1111   1


Q ss_pred             HHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc-ccHHHHHHHHHHcccCCe
Q 047371           99 QNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL-NPLPQLADHIVSYAKPGA  177 (222)
Q Consensus        99 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-~~~~~~l~~~~~~LkpgG  177 (222)
                      .+....+...+++.++.++......   ......             +..++|+++.+.-. ......++.+...|+|||
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~---~~l~~~-------------~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GG  211 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVP---RYLAEN-------------PQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGS  211 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHH---HHHHHC-------------TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHH---HHHHhC-------------CCCceEEEEEcCcccchHHHHHHHHHHHhCCCc
Confidence            1112233322578888887644311   111111             45679999997754 345668999999999999


Q ss_pred             EEEEecCCCCcHHHHHHHHHhh
Q 047371          178 VVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                      ++++..+.........+++.+.
T Consensus       212 vIv~DD~~~~~w~G~~~A~~ef  233 (257)
T 3tos_A          212 IVAFDELDNPKWPGENIAMRKV  233 (257)
T ss_dssp             EEEESSTTCTTCTHHHHHHHHH
T ss_pred             EEEEcCCCCCCChHHHHHHHHH
Confidence            9999776432222444444444

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.76  E-value=0.0093  Score=49.97  Aligned_cols=73  Identities=18%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      ++|+|+.||.|.++.-+.+.|...+.++|+++.+.+..+.|..        -.+...|...+...               
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~--------~~~~~~DI~~i~~~---------------   57 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS--------AKLIKGDISKISSD---------------   57 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC--------SEEEESCGGGCCGG---------------
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC--------CCcccCChhhCCHh---------------
Confidence            3699999999999988888888889999999988888777642        13455665444210               


Q ss_pred             cccCCCCCCCeeEEEecccccc
Q 047371          140 EIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                            ....+|+++..+|+..
T Consensus        58 ------~~~~~D~l~ggpPCQ~   73 (331)
T 3ubt_Y           58 ------EFPKCDGIIGGPPSQS   73 (331)
T ss_dssp             ------GSCCCSEEECCCCGGG
T ss_pred             ------hCCcccEEEecCCCCC
Confidence                  2346899999888754

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.52  E-value=0.011  Score=50.44  Aligned_cols=102  Identities=17%  Similarity=0.245  Sum_probs=65.4

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||..|+|. |..+..+++. +..+|+++|.++..++.+++.    +..   ..+...+ ..+.    +....  
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~-~~~~----~~~~~--  253 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKT-QDPV----AAIKE--  253 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTT-SCHH----HHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCc-cCHH----HHHHH--
Confidence            67899999999875 6666666664 655899999999998888653    321   1111111 1110    00001  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                . ..+.+|+|+.....   ...++.+.++|+++|.+++.+..
T Consensus       254 ----------~-~~gg~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~~  291 (371)
T 1f8f_A          254 ----------I-TDGGVNFALESTGS---PEILKQGVDALGILGKIAVVGAP  291 (371)
T ss_dssp             ----------H-TTSCEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             ----------h-cCCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEeCCC
Confidence                      1 12379999975432   35678889999999999986543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.43  E-value=0.01  Score=51.23  Aligned_cols=106  Identities=21%  Similarity=0.351  Sum_probs=66.0

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||.+|+|. |..+..+++. +..+|+++|.++..++.+++    .+.   . .+...+.+.+.    +.+..  
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~-~i~~~~~~~~~----~~~~~--  248 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF---E-TIDLRNSAPLR----DQIDQ--  248 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC---E-EEETTSSSCHH----HHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---c-EEcCCCcchHH----HHHHH--
Confidence            67899999999876 6777777764 65589999999998887764    232   1 11111111000    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                ......+|+++.......           ....++.+.++|+++|.+++.+..
T Consensus       249 ----------~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          249 ----------ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             ----------HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             ----------HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence                      112336999997554321           124678889999999999876543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.23  E-value=0.015  Score=48.87  Aligned_cols=103  Identities=18%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++++||-.|+|. |..+..+++. +...++++|.++..++.+++.    |..   ..+...+....     +....  
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~-----~~~~~--  223 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAM---QTFNSSEMSAP-----QMQSV--  223 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHH-----HHHHH--
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCe---EEEeCCCCCHH-----HHHHh--
Confidence            67899999999876 4555556654 667889999999988888653    432   11221111100     00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                +.....+|+++....   ....++.+.++++++|.+++.+..
T Consensus       224 ----------~~~~~g~d~v~d~~G---~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          224 ----------LRELRFNQLILETAG---VPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             ----------HGGGCSSEEEEECSC---SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             ----------hcccCCccccccccc---ccchhhhhhheecCCeEEEEEecc
Confidence                      113456788886432   246778888999999999986554

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.23  E-value=0.0085  Score=51.82  Aligned_cols=105  Identities=18%  Similarity=0.198  Sum_probs=61.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++.    |..   ..+. .....+.    +.+    
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~-~~~~~~~----~~i----  274 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVID-PTKENFV----EAV----  274 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEEC-TTTSCHH----HHH----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEc-CCCCCHH----HHH----
Confidence            56789999999864 5566666664 555999999999998888653    321   1111 1111110    011    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccc--cHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLN--PLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              ..+.....+|+++....-.  .....++.+.+.++++|.+++.+.
T Consensus       275 --------~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          275 --------LDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             --------HHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             --------HHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence                    1111344799999754433  122233333355599999998654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.18  E-value=0.013  Score=48.69  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=54.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCE--EEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAM--FVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+.+++|+.||.|.++.-+.+.|...  +.++|+++.+.+..+.|..       ...+...|...+...      .+   
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-------~~~~~~~DI~~i~~~------~i---   78 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-------GKIMYVGDVRSVTQK------HI---   78 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-------TCEEEECCGGGCCHH------HH---
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-------CCceeCCChHHccHH------Hh---
Confidence            45689999999999999888877655  7999999998877766542       223455665544210      00   


Q ss_pred             cccccccCCCCCCCeeEEEecccccc
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                               .....+|+++..+|+..
T Consensus        79 ---------~~~~~~Dll~ggpPCQ~   95 (295)
T 2qrv_A           79 ---------QEWGPFDLVIGGSPCND   95 (295)
T ss_dssp             ---------HHTCCCSEEEECCCCGG
T ss_pred             ---------cccCCcCEEEecCCCcc
Confidence                     01246899999887643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.13  E-value=0.0044  Score=52.49  Aligned_cols=101  Identities=20%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++.    +..   ..+...+. .+.    +.     
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~-~~~----~~-----  226 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNG-DIV----EQ-----  226 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGS-CHH----HH-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCc-CHH----HH-----
Confidence            67899999999865 6666667765 545899999999888888653    322   11111111 110    00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +........+|+++.....   ...++.+.++|+++|.++..+
T Consensus       227 -------v~~~t~g~g~D~v~d~~g~---~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          227 -------ILKATDGKGVDKVVIAGGD---VHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             -------HHHHTTTCCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECC
T ss_pred             -------HHHHcCCCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEec
Confidence                   0111134479999964432   246778888999999998754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.10  E-value=0.025  Score=48.30  Aligned_cols=104  Identities=22%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++.    |..   ..+...+ ..+.    +....  
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~-~~~~----~~i~~--  245 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSA-GDVV----EAIAG--  245 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTS-SCHH----HHHHS--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCC-cCHH----HHHHh--
Confidence            67899999999865 5666666664 555999999999988887653    332   1111111 1110    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             ...+ ..+.+|+++....   ....++.+.++|+++|.+++.+.
T Consensus       246 -------~~~~-~~gg~Dvvid~~G---~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          246 -------PVGL-VPGGVDVVIECAG---VAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             -------TTSS-STTCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             -------hhhc-cCCCCCEEEECCC---CHHHHHHHHHHhccCCEEEEEec
Confidence                   0001 1237999997543   24678888999999999998644

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.98  E-value=0.021  Score=49.64  Aligned_cols=47  Identities=15%  Similarity=0.082  Sum_probs=41.4

Q ss_pred             cCCCcEEEEccCCCHHHHHHH-Hh-C-CCEEEEEeCChHHHHHHHHHHHh
Q 047371           57 KGGELFLDYGTGSGILGIAAI-KF-G-AAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la-~~-~-~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      +++..++|+||+.|.++..++ +. + .++|+++|.+|...+..++++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            578899999999999999877 43 3 37999999999999999999986

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.93  E-value=0.047  Score=46.87  Aligned_cols=105  Identities=18%  Similarity=0.367  Sum_probs=65.6

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++    .|.   . .+...+.+.+.    +.+..  
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~-~i~~~~~~~~~----~~v~~--  248 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---E-IADLSLDTPLH----EQIAA--  248 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---E-EEETTSSSCHH----HHHHH--
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC---c-EEccCCcchHH----HHHHH--
Confidence            67899999999865 6677777764 55589999999999888864    232   1 11111111010    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ......+|+|+.......            ....++.+.++|+++|.+++.+.
T Consensus       249 ----------~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          249 ----------LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             ----------HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             ----------HhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence                      112346999997554321            12467888999999999988654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.93  E-value=0.031  Score=47.69  Aligned_cols=102  Identities=19%  Similarity=0.289  Sum_probs=64.5

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC-Ccccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP-DRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++    .|..  . .+...+ ...+    .+.....
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~-vi~~~~~~~~~----~~~i~~~  259 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN--E-FVNPKDHDKPI----QEVIVDL  259 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC--E-EECGGGCSSCH----HHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc--E-EEccccCchhH----HHHHHHh
Confidence            56899999999864 5666666664 65589999999998887764    3432  1 111110 0111    0111111


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (222)
                                   ..+.+|+++....   ....++.+.++|++| |.+++.+.
T Consensus       260 -------------~~gg~D~vid~~g---~~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          260 -------------TDGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             -------------TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             -------------cCCCCCEEEECCC---CHHHHHHHHHHhhccCCEEEEEcc
Confidence                         2237999997543   245788899999997 99988544

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.92  E-value=0.006  Score=51.59  Aligned_cols=78  Identities=12%  Similarity=0.074  Sum_probs=54.0

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCC--CEE-EEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGA--AMF-VGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~--~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ...+++|++||.|.++.-+.+.+.  ..+ .++|+++.+.+..+.|....        ....|...+..      ..+  
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--------~~~~DI~~~~~------~~i--   72 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--------VQVKNLDSISI------KQI--   72 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--------CBCCCTTTCCH------HHH--
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--------cccCChhhcCH------HHh--
Confidence            355899999999999998887763  567 79999999998888875321        33444443321      001  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccH
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPL  162 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~  162 (222)
                                 +...+|+++..+|+...
T Consensus        73 -----------~~~~~Dil~ggpPCQ~f   89 (327)
T 3qv2_A           73 -----------ESLNCNTWFMSPPCQPY   89 (327)
T ss_dssp             -----------HHTCCCEEEECCCCTTC
T ss_pred             -----------ccCCCCEEEecCCccCc
Confidence                       12268999999886554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.90  E-value=0.054  Score=45.28  Aligned_cols=101  Identities=13%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|++.  |..+..+++....+|++++.++..++.+.+.   .+..   ..+...+ ..+.    +....  
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~-~~~~----~~~~~--  213 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGFD---GAIDYKN-EDLA----AGLKR--  213 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCCS---EEEETTT-SCHH----HHHHH--
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCC---EEEECCC-HHHH----HHHHH--
Confidence            67899999999833  5666666654335999999999888777332   2321   1121111 1110    00111  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                . ..+.+|+++.+..-    ..++.+.+.|+++|.+++.+.
T Consensus       214 ----------~-~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          214 ----------E-CPKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             ----------H-CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             ----------h-cCCCceEEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence                      1 13479999976642    467888899999999998544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.86  E-value=0.017  Score=48.66  Aligned_cols=94  Identities=13%  Similarity=0.109  Sum_probs=63.8

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++||-.|+|. |..+..+++.-..+|+++|.++..++.+++    .|..  .+ +  .+.+.+             
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~--~v-~--~~~~~~-------------  231 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK--HF-Y--TDPKQC-------------  231 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS--EE-E--SSGGGC-------------
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC--ee-c--CCHHHH-------------
Confidence            67899999999865 666666776534589999999998887765    3432  22 2  221111             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                  ...+|+++....-.   ..++.+.++|+++|.+++.+...
T Consensus       232 ------------~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          232 ------------KEELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             ------------CSCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCCCC
T ss_pred             ------------hcCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECCCC
Confidence                        12799999754332   24667888999999999865543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.82  E-value=0.03  Score=47.39  Aligned_cols=102  Identities=19%  Similarity=0.227  Sum_probs=64.1

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC--Cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP--DRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~  131 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++    .+..  . .+....  ...+       ...
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~-vi~~~~~~~~~~-------~~~  234 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD--L-VLQISKESPQEI-------ARK  234 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS--E-EEECSSCCHHHH-------HHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC--E-EEcCcccccchH-------HHH
Confidence            67899999999865 6666666664 54589999999988888764    2332  1 111110  0000       000


Q ss_pred             chhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      +         ..... +.+|+++.....   ...++.+.++|+++|.+++.+.
T Consensus       235 i---------~~~~~-~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          235 V---------EGQLG-CKPEVTIECTGA---EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             H---------HHHHT-SCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             H---------HHHhC-CCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEec
Confidence            0         00112 569999975532   3467788899999999998654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.79  E-value=0.026  Score=47.85  Aligned_cols=106  Identities=21%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+|. |..+..+++. +...|+++|.++..++.+++. ...     -+.+...+...-     +....  
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~-----~~~~~~~~~~~~-----~~~~~--  243 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE-----VVTHKVERLSAE-----ESAKK--  243 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT-----CEEEECCSCCHH-----HHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh-----cccccccccchH-----HHHHH--
Confidence            67899999999865 5666667765 554599999999999988865 211     122221110000     00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             +........+|+++....-   ...++.+.++|+++|.+++.+.
T Consensus       244 -------v~~~t~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          244 -------IVESFGGIEPAVALECTGV---ESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             -------HHHHTSSCCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECCC
T ss_pred             -------HHHHhCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEcc
Confidence                   0111134579999975432   3467888899999999998644

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.78  E-value=0.034  Score=46.62  Aligned_cols=101  Identities=14%  Similarity=0.222  Sum_probs=65.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++||-.|+|. |..+..+++.-..+|+++|.++..++.+++    .+..   ..+...+ ..+.       ..+  
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~-~~~~-------~~~--  226 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE---VAVNARD-TDPA-------AWL--  226 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEETTT-SCHH-------HHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC---EEEeCCC-cCHH-------HHH--
Confidence            57899999999876 777777777534599999999998888765    2322   1122111 1110       000  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                             ..  ..+.+|+++....   ....++.+.++|+++|.+++.+..
T Consensus       227 -------~~--~~g~~d~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~~  265 (340)
T 3s2e_A          227 -------QK--EIGGAHGVLVTAV---SPKAFSQAIGMVRRGGTIALNGLP  265 (340)
T ss_dssp             -------HH--HHSSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             -------HH--hCCCCCEEEEeCC---CHHHHHHHHHHhccCCEEEEeCCC
Confidence                   00  1236899986543   246788899999999999986543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.77  E-value=0.05  Score=46.25  Aligned_cols=102  Identities=17%  Similarity=0.160  Sum_probs=63.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      +++|++||-+|+|. |..+..+++. +..+|+++|.++..++.+++    .+..  . .+...+. ..+.    +.... 
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~-vi~~~~~~~~~~----~~i~~-  256 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT--E-CLNPKDYDKPIY----EVICE-  256 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS--E-EECGGGCSSCHH----HHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc--E-EEecccccchHH----HHHHH-
Confidence            56899999999765 5666666654 65589999999998888764    2432  1 1111110 0110    00011 


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (222)
                                 . ..+.+|+++.....   ...++.+.++|+++ |.+++.+.
T Consensus       257 -----------~-t~gg~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          257 -----------K-TNGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             -----------H-TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -----------H-hCCCCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEEcc
Confidence                       1 12379999965432   35678889999999 99988654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.76  E-value=0.0027  Score=66.69  Aligned_cols=100  Identities=12%  Similarity=0.094  Sum_probs=50.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hC-----CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FG-----AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      +..+||++|+|+|..+..+.. .+     ..+++.+|+++...+.|++.+....     +.....+....        .+
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d-----i~~~~~d~~~~--------~~ 1306 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH-----VTQGQWDPANP--------AP 1306 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT-----EEEECCCSSCC--------CC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc-----ccccccccccc--------cc
Confidence            467999999999976554332 21     3578999999888877777654322     11211111000        00


Q ss_pred             chhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      .             ....||+|++...++.   +...+.+++++|||||++++..
T Consensus      1307 ~-------------~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1307 G-------------SLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             ------------------CCEEEEECC--------------------CCEEEEEE
T ss_pred             C-------------CCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            0             2346999999877763   4567899999999999988854

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.75  E-value=0.0054  Score=52.27  Aligned_cols=101  Identities=14%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++||-.|+|. |..+..+++....+|+++|.++..++.+++.    +..   ..+. .+...+.    +....   
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~-~~~~~~~----~~v~~---  251 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD---HGIN-RLEEDWV----ERVYA---  251 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEE-TTTSCHH----HHHHH---
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC---EEEc-CCcccHH----HHHHH---
Confidence            66899999999775 6666666665345999999999988887652    332   1122 2111110    00011   


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ......+|+++....-    ..++.+.++|+++|.+++.+.
T Consensus       252 ---------~~~g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          252 ---------LTGDRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             ---------HHTTCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECC
T ss_pred             ---------HhCCCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEec
Confidence                     1134479999976542    346677889999999998644

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.72  E-value=0.0067  Score=51.42  Aligned_cols=76  Identities=17%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             CcEEEEccCCCHHHHHHHHhCC--CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGA--AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .+++|++||.|.++.-+.+.+.  ..+.++|+++.+.+..+.|...       ..+...|...+..      ..+     
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-------~~~~~~DI~~~~~------~~~-----   65 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-------TNLLNRNIQQLTP------QVI-----   65 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-------SCEECCCGGGCCH------HHH-----
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-------CceeccccccCCH------HHh-----
Confidence            3699999999999988877764  6689999999988888776532       2234445443321      000     


Q ss_pred             cccccCCCCCCCeeEEEecccccc
Q 047371          138 SHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                              +...+|+++..+|+..
T Consensus        66 --------~~~~~D~l~ggpPCQ~   81 (333)
T 4h0n_A           66 --------KKWNVDTILMSPPCQP   81 (333)
T ss_dssp             --------HHTTCCEEEECCCCCC
T ss_pred             --------ccCCCCEEEecCCCcc
Confidence                    1235899999888754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.57  E-value=0.007  Score=50.64  Aligned_cols=101  Identities=19%  Similarity=0.160  Sum_probs=62.7

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ | .|..+..+++....+|++++.++..++.+++.    +..   ..+...+ ..+.    +..    
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~-~~~~----~~~----  201 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GAW---ETIDYSH-EDVA----KRV----  201 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTT-SCHH----HHH----
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCC-ccHH----HHH----
Confidence            567899999883 3 25666666654235899999999988888652    321   1122111 1110    000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              ........+|+++.+...    ..+..+.++|+++|.+++.+.
T Consensus       202 --------~~~~~~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          202 --------LELTDGKKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             --------HHHTTTCCEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred             --------HHHhCCCCceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence                    111134579999976543    456778889999999998644

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.55  E-value=0.073  Score=45.21  Aligned_cols=96  Identities=9%  Similarity=0.152  Sum_probs=63.2

Q ss_pred             CCCcEEEEc-cCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYG-TGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G-~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|++||-.| +|. |..+..+++. +..+|+++|.++..++.+++    .|..  .+ +...  +.+.    +.      
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad--~v-i~~~--~~~~----~~------  231 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH--HV-IDHS--KPLA----AE------  231 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS--EE-ECTT--SCHH----HH------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC--EE-EeCC--CCHH----HH------
Confidence            678999998 554 7777788875 66899999999988888765    3432  11 1111  1110    00      


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                            +..+ ..+.+|+++....   -...++.+.++|+++|.+++.
T Consensus       232 ------v~~~-~~~g~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          232 ------VAAL-GLGAPAFVFSTTH---TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             ------HHTT-CSCCEEEEEECSC---HHHHHHHHHHHSCTTCEEEEC
T ss_pred             ------HHHh-cCCCceEEEECCC---chhhHHHHHHHhcCCCEEEEE
Confidence                  1111 3457999996442   235778889999999999885

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.53  E-value=0.072  Score=45.23  Aligned_cols=102  Identities=19%  Similarity=0.263  Sum_probs=63.6

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++.    +..  .+ +...+. ..+.    +.... 
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~v-i~~~~~~~~~~----~~v~~-  255 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--EC-INPQDFSKPIQ----EVLIE-  255 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--EE-ECGGGCSSCHH----HHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--eE-eccccccccHH----HHHHH-
Confidence            56899999999764 5566666654 655899999999988888642    322  11 111110 0110    00011 


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (222)
                                 . ..+.+|+++.....   ...++.+.++|+++ |.+++.+.
T Consensus       256 -----------~-~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          256 -----------M-TDGGVDYSFECIGN---VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             -----------H-TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             -----------H-hCCCCCEEEECCCc---HHHHHHHHHhhccCCcEEEEEec
Confidence                       1 12379999975432   35678889999999 99988654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.52  E-value=0.0089  Score=50.15  Aligned_cols=100  Identities=15%  Similarity=0.168  Sum_probs=62.4

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ | .|..+..+++....+|++++.++..++.+++.    +..   ..+...+ ..+.    +..    
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~~~~~~~-~~~~----~~~----  209 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GAE---YLINASK-EDIL----RQV----  209 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTT-SCHH----HHH----
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEEeCCC-chHH----HHH----
Confidence            568899999984 3 35666666665346899999999888877652    321   1121111 1110    000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              ........+|+++.+..-    ..++.+.++|+++|.+++.+
T Consensus       210 --------~~~~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          210 --------LKFTNGKGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             --------HHHTTTSCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             --------HHHhCCCCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence                    111134579999976643    45677888999999999854

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.52  E-value=0.009  Score=50.36  Aligned_cols=102  Identities=17%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             hhcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           55 LIKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        55 ~~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .++++++||-.|+|. |..+..+++. +..+|+++|.+++.++.+++.    |..  .+ +.. +. .+.    +.....
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~--~~-i~~-~~-~~~----~~v~~~  234 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GAD--AA-VKS-GA-GAA----DAIREL  234 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCS--EE-EEC-ST-THH----HHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC--EE-EcC-CC-cHH----HHHHHH
Confidence            367899999999865 6666667664 568999999999998888652    432  11 111 11 110    111111


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  .....+|+++....-   ...++.+.++|+++|.+++.+.
T Consensus       235 ------------t~g~g~d~v~d~~G~---~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          235 ------------TGGQGATAVFDFVGA---QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             ------------HGGGCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             ------------hCCCCCeEEEECCCC---HHHHHHHHHHHhcCCEEEEECC
Confidence                        123469999975432   3578888999999999998654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.43  E-value=0.024  Score=47.58  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=63.5

Q ss_pred             hcCCCcEEEEccCCC-HHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSG-ILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G-~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++|++||-.|+|.+ .++..+++ .+..+|+++|.++..++.+++.    +..   ..+...+.+..     +..    
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~---~~i~~~~~~~~-----~~v----  224 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GAD---VTINSGDVNPV-----DEI----  224 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCS---EEEEC-CCCHH-----HHH----
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCe---EEEeCCCCCHH-----HHh----
Confidence            678999999999874 44544444 5668999999999888777653    321   12222221111     001    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              ........+|.++....   -...+....++++++|.+++.+.
T Consensus       225 --------~~~t~g~g~d~~~~~~~---~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          225 --------KKITGGLGVQSAIVCAV---ARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             --------HHHTTSSCEEEEEECCS---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             --------hhhcCCCCceEEEEecc---CcchhheeheeecCCceEEEEec
Confidence                    11113446787775432   24667888899999999988543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.42  E-value=0.024  Score=50.46  Aligned_cols=42  Identities=14%  Similarity=0.185  Sum_probs=36.4

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      .+++|++||.|.++.-+.+.|...+.++|+++.+.+..+.|.
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            479999999999999888778777999999998887777664

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.39  E-value=0.0057  Score=47.24  Aligned_cols=100  Identities=16%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      ++++++||..|++.  |.....++. .+ .+|+++|.++..++.+++    .+..   ..+...+. ..       ...+
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~-~~-------~~~~   99 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSR----LGVE---YVGDSRSV-DF-------ADEI   99 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHT----TCCS---EEEETTCS-TH-------HHHH
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH----cCCC---EEeeCCcH-HH-------HHHH
Confidence            56789999998533  444444443 45 589999999987766643    2321   11211111 10       0000


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ......+.+|+++.+..    ...++.+.+.|+++|.++..+.
T Consensus       100 ---------~~~~~~~~~D~vi~~~g----~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          100 ---------LELTDGYGVDVVLNSLA----GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             ---------HHHTTTCCEEEEEECCC----THHHHHHHHTEEEEEEEEECSC
T ss_pred             ---------HHHhCCCCCeEEEECCc----hHHHHHHHHHhccCCEEEEEcC
Confidence                     00112346999997653    2567888899999999988543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.30  E-value=0.073  Score=45.26  Aligned_cols=102  Identities=14%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++    .+..  .+ +...+. ..+.    +.....
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~v-i~~~~~~~~~~----~~~~~~  258 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT--DF-VNPNDHSEPIS----QVLSKM  258 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC--EE-ECGGGCSSCHH----HHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc--eE-EeccccchhHH----HHHHHH
Confidence            56899999999764 5566666664 54489999999998888764    2332  11 111110 0110    000011


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (222)
                                   ..+.+|+++.....   ...++.+.++|+++ |.+++.+.
T Consensus       259 -------------~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          259 -------------TNGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             -------------HTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             -------------hCCCCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEEcC
Confidence                         12379999975432   35678889999999 99988654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.22  E-value=0.018  Score=48.66  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++||-.|+|. |..+..+++.-..+|+++|.++..++.+++    .+..   ..+...+...+.    ......  
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~----~~i~~~--  232 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEE----SSIIER--  232 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCH----HHHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHH----HHHHHH--
Confidence            67899999999864 556666666433569999999998888764    2332   112111101110    000000  


Q ss_pred             ccccccccCCCC---CCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISE---TEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~---~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ..   .+.+|+++.....   ...++.+.++|+++|.++..+.
T Consensus       233 ----------~~~~~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          233 ----------IRSAIGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             ----------HHHHSSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             ----------hccccCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence                      01   2469999975533   3467788899999999998643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.22  E-value=0.098  Score=43.61  Aligned_cols=101  Identities=19%  Similarity=0.219  Sum_probs=61.4

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||..|++  .|..+..+++....+|+++|.++..++.+++.    +..   ..+...+...+.    .....  
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~~---~~~d~~~~~~~~----~~~~~--  209 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLE----EALKK--  209 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHH----HHHHH--
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCc---EEEecCCHHHHH----HHHHH--
Confidence            5678999999983  35555555544335899999999888777332    321   112211101110    00001  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                . ..+.+|+++.+...    ..++.+.++|+++|.+++.+.
T Consensus       210 ----------~-~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          210 ----------A-SPDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             ----------H-CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             ----------H-hCCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEec
Confidence                      1 12579999987653    357788899999999988543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.18  E-value=0.012  Score=50.32  Aligned_cols=104  Identities=14%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC--Cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP--DRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~  131 (222)
                      +++|++||-.|+|. |..+..+++. +..+|++++.++..++.+++    .+..  .+ +....  ...+.    +..  
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~v-i~~~~~~~~~~~----~~v--  259 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD--LT-LNRRETSVEERR----KAI--  259 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS--EE-EETTTSCHHHHH----HHH--
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc--EE-EeccccCcchHH----HHH--
Confidence            56789999999664 5666666665 43599999999998888764    2322  11 11110  00000    000  


Q ss_pred             chhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                ........+|+++.....   ...++.+.++|+++|.++..+..
T Consensus       260 ----------~~~~~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G~~  300 (380)
T 1vj0_A          260 ----------MDITHGRGADFILEATGD---SRALLEGSELLRRGGFYSVAGVA  300 (380)
T ss_dssp             ----------HHHTTTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             ----------HHHhCCCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEEecC
Confidence                      011123469999976543   24567788899999999886543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.14  E-value=0.1  Score=44.38  Aligned_cols=102  Identities=21%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++    .+..  . .+...+. ..+.    +.... 
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~-vi~~~~~~~~~~----~~~~~-  256 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT--E-CVNPQDYKKPIQ----EVLTE-  256 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--E-EECGGGCSSCHH----HHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc--e-EecccccchhHH----HHHHH-
Confidence            56899999999765 5566666664 54489999999998888764    2322  1 1111110 0110    00011 


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (222)
                                 . ..+.+|+++.....   ...++.+.++|+++ |.+++.+.
T Consensus       257 -----------~-~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          257 -----------M-SNGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             -----------H-TTSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             -----------H-hCCCCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEecc
Confidence                       1 12379999975432   35678888999999 99988543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.11  E-value=0.016  Score=49.50  Aligned_cols=98  Identities=13%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++||-.|+|. |..+..+++.-..+|+++|.++..++.+++    .+..  .+ +...+ ..+       ..    
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa~--~v-i~~~~-~~~-------~~----  252 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD--EV-VNSRN-ADE-------MA----  252 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS--EE-EETTC-HHH-------HH----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc--EE-ecccc-HHH-------HH----
Confidence            67899999999875 566666666534579999999998888865    2322  11 11111 000       00    


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              .+  .+.+|+++......   ..++.+.++|+++|.++..+..
T Consensus       253 --------~~--~~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          253 --------AH--LKSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             --------TT--TTCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECCCC
T ss_pred             --------Hh--hcCCCEEEECCCCH---HHHHHHHHHhccCCEEEEeccC
Confidence                    11  15799999754432   2356678899999999886543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.08  E-value=0.0085  Score=50.46  Aligned_cols=101  Identities=13%  Similarity=0.095  Sum_probs=61.9

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+|+  |..+..+++....+|+++|.++..++.+++.    +..   ..+...+ ..+.    +..    
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~-~~~~----~~~----  205 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GAA---YVIDTST-APLY----ETV----  205 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEETTT-SCHH----HHH----
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CCc---EEEeCCc-ccHH----HHH----
Confidence            67899999999874  5666666654235899999999888888752    321   1121111 1110    000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              ..+.....+|+++.+....    ......++|+++|.+++.+.
T Consensus       206 --------~~~~~~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          206 --------MELTNGIGADAAIDSIGGP----DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             --------HHHTTTSCEEEEEESSCHH----HHHHHHHTEEEEEEEEECCC
T ss_pred             --------HHHhCCCCCcEEEECCCCh----hHHHHHHHhcCCCEEEEEee
Confidence                    1111345799999765432    22334589999999998654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.03  E-value=0.087  Score=44.80  Aligned_cols=102  Identities=17%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++    .+..  . .+...+. ..+.    +.....
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~-vi~~~~~~~~~~----~~v~~~  261 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT--D-CLNPRELDKPVQ----DVITEL  261 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--E-EECGGGCSSCHH----HHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc--E-EEccccccchHH----HHHHHH
Confidence            56899999999764 5666666664 54589999999998888764    2332  1 1111110 0110    000000


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (222)
                                   ..+.+|+++.....   ...++.+.++|+++ |.+++.+.
T Consensus       262 -------------~~~g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          262 -------------TAGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             -------------HTSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -------------hCCCccEEEECCCC---HHHHHHHHHHhhcCCCEEEEECC
Confidence                         12379999965432   35678889999999 99988544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.85  E-value=0.74  Score=39.29  Aligned_cols=116  Identities=12%  Similarity=0.039  Sum_probs=78.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .+.+||.++.+.|.++..++..+   ++.+.-|-..-...+.|+..+++..+.+++...-. .                 
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~-----------------   96 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFLDSTA-D-----------------   96 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS-C-----------------
T ss_pred             CCCCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc-c-----------------
Confidence            45689999999999998876543   34443355555566788888888744455543211 0                 


Q ss_pred             cccccCCCCCCCeeEEEeccccc--cHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhc
Q 047371          138 SHEIRGISETEEYDVVIANILLN--PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLED  202 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  202 (222)
                              ....+|+++...|-.  .+...+..+...|++|+.+++.+-...-...+.+.++..+..
T Consensus        97 --------~~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~~~~  155 (375)
T 4dcm_A           97 --------YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLGP  155 (375)
T ss_dssp             --------CCSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHHTCC
T ss_pred             --------cccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhhcCc
Confidence                    356799999876643  245578899999999999988654444445666666665433

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.76  E-value=0.032  Score=47.01  Aligned_cols=100  Identities=21%  Similarity=0.274  Sum_probs=61.7

Q ss_pred             CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++.    +..  .+ +. .....+.    +..      
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~--~~-~~-~~~~~~~----~~v------  228 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD--YV-IN-PFEEDVV----KEV------  228 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS--EE-EC-TTTSCHH----HHH------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC--EE-EC-CCCcCHH----HHH------
Confidence            789999999854 5555566654 544899999999888877642    321  11 11 1111110    000      


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                            ........+|+++.....   ...++.+.+.|+++|.++..+.
T Consensus       229 ------~~~~~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          229 ------MDITDGNGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             ------HHHTTTSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             ------HHHcCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEcc
Confidence                  011123469999976542   3567888899999999988543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.74  E-value=0.067  Score=44.43  Aligned_cols=92  Identities=13%  Similarity=0.099  Sum_probs=59.2

Q ss_pred             cEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           61 LFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        61 ~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      +||-.|+ | .|..+..+++.-..+|++++.++..++.+++.    |..  . .+...+...        .         
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~-vi~~~~~~~--------~---------  204 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN--R-ILSRDEFAE--------S---------  204 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS--E-EEEGGGSSC--------C---------
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC--E-EEecCCHHH--------H---------
Confidence            4998887 3 36777777775335899999999988888652    322  1 121111100        0         


Q ss_pred             ccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          139 HEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                         ..+ ..+.+|+++....    ...++.+.++|+++|.++..+.
T Consensus       205 ---~~~-~~~~~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          205 ---RPL-EKQLWAGAIDTVG----DKVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             ---CSS-CCCCEEEEEESSC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             ---Hhh-cCCCccEEEECCC----cHHHHHHHHHHhcCCEEEEEec
Confidence               111 2357999886543    2378889999999999998644

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.71  E-value=0.073  Score=44.61  Aligned_cols=102  Identities=13%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|++  .|..+..+++....+|++++.++..++.+++.   .+..   ..+...+...+.    .....  
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~~----~~~~~--  220 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---DAFNYKEESDLT----AALKR--  220 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---EEEETTSCSCSH----HHHHH--
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---eEEecCCHHHHH----HHHHH--
Confidence            5688999999973  35566655554335899999999888777632   2321   112111111110    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                . ..+.+|+++.+...    ..++.+.++|+++|.+++.+.
T Consensus       221 ----------~-~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          221 ----------C-FPNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             ----------H-CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             ----------H-hCCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEcc
Confidence                      1 12569999976642    467888899999999988543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.69  E-value=0.27  Score=35.54  Aligned_cols=96  Identities=13%  Similarity=0.012  Sum_probs=56.2

Q ss_pred             CCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ..+|+-+|+|. |. ++..|.+.+ .+|+++|.++..++.++.    .+     +.+..+|......     +...    
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~----~g-----~~~i~gd~~~~~~-----l~~a----   67 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASD-IPLVVIETSRTRVDELRE----RG-----VRAVLGNAANEEI-----MQLA----   67 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH----TT-----CEEEESCTTSHHH-----HHHT----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH----cC-----CCEEECCCCCHHH-----HHhc----
Confidence            35788888865 33 233344444 589999999998877764    23     3456666543210     0000    


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                               ....+|++++..+-+.....+-...+.+.|+..++..
T Consensus        68 ---------~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           68 ---------HLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             ---------TGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             ---------CcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEE
Confidence                     2346899987655443333344456667788776653

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.65  E-value=0.21  Score=42.04  Aligned_cols=101  Identities=15%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             hcCC--CcEEEEccCC--CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           56 IKGG--ELFLDYGTGS--GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        56 ~~~~--~~vLD~G~G~--G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      ++++  ++||-.|++.  |..+..+++. +..+|+++|.++..++.+++.   .+..   ..+...+ ..+.    ....
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~d~~~-~~~~----~~~~  224 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAINYKK-DNVA----EQLR  224 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEEETTT-SCHH----HHHH
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEEecCc-hHHH----HHHH
Confidence            6778  9999999733  4555555544 544999999998877776542   2321   1121111 1110    0001


Q ss_pred             cchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      .            .... .+|+++.+..    ...++.+.++|+++|.+++.+.
T Consensus       225 ~------------~~~~-~~d~vi~~~G----~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          225 E------------SCPA-GVDVYFDNVG----GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             H------------HCTT-CEEEEEESCC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             H------------hcCC-CCCEEEECCC----HHHHHHHHHHhccCcEEEEECC
Confidence            1            1122 7999998765    2667888999999999988543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.61  E-value=0.15  Score=42.75  Aligned_cols=100  Identities=15%  Similarity=0.177  Sum_probs=62.6

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++++||-.|+|. |..+..+++.-..+|+++|.++..++.+++    .+..  .+ +...+ ..+.       ..+  
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~--~~-~d~~~-~~~~-------~~~--  224 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD--LV-VNPLK-EDAA-------KFM--  224 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS--EE-ECTTT-SCHH-------HHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC--EE-ecCCC-ccHH-------HHH--
Confidence            67899999999864 555666665433599999999998887764    2322  11 11111 1110       000  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             ... . +.+|+++.+...   ...++.+.++|+++|.++..+.
T Consensus       225 -------~~~-~-~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          225 -------KEK-V-GGVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             -------HHH-H-SSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             -------HHH-h-CCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence                   000 1 469999976543   3567888899999999988544

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.49  E-value=0.11  Score=43.76  Aligned_cols=102  Identities=12%  Similarity=0.102  Sum_probs=62.3

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||..|++  .|..+..+++....+|+++|.++..++.+++    .+..   ..+...+...+.    ...... 
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~----~~~~~~-  234 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDIV----GAVLKA-  234 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC---EEEETTTCSCHH----HHHHHH-
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc---eEEecCccHhHH----HHHHHH-
Confidence            5688999999983  3555555555433589999999888776654    2321   112111111110    000111 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 ... .+|+++.+...   ...++.+.+.|+++|.++..+.
T Consensus       235 -----------~~~-~~D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          235 -----------TDG-GAHGVINVSVS---EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             -----------HTS-CEEEEEECSSC---HHHHHHHTTSEEEEEEEEECCC
T ss_pred             -----------hCC-CCCEEEECCCc---HHHHHHHHHHHhcCCEEEEEeC
Confidence                       122 69999987643   3577888999999999988544

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.42  E-value=0.022  Score=47.97  Aligned_cols=101  Identities=13%  Similarity=0.207  Sum_probs=62.5

Q ss_pred             hcCCCcEEEEcc--CCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT--GSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~--G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||-.|+  |.|..+..+++....+|++++.++..++.+++    .+..  . .+...+. .+.    .....  
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~ga~--~-~~d~~~~-~~~----~~~~~--  229 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA----LGAD--E-TVNYTHP-DWP----KEVRR--  229 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCS--E-EEETTST-THH----HHHHH--
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC--E-EEcCCcc-cHH----HHHHH--
Confidence            567899999998  34666666665433589999999998888764    2321  1 1211111 110    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ......+|+++.+.. .   ..++.+.++|+++|.++..+.
T Consensus       230 ----------~~~~~~~d~vi~~~g-~---~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          230 ----------LTGGKGADKVVDHTG-A---LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             ----------HTTTTCEEEEEESSC-S---SSHHHHHHHEEEEEEEEESSC
T ss_pred             ----------HhCCCCceEEEECCC-H---HHHHHHHHhhccCCEEEEEec
Confidence                      112347999998765 2   346777889999999988543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.41  E-value=0.21  Score=42.23  Aligned_cols=100  Identities=13%  Similarity=0.083  Sum_probs=63.1

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ | .|..+..+++....+|++++.++..++.+++    .+..   ..+. .+...+.    +....  
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~-~~~~~~~----~~~~~--  226 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---RPIN-YKTEPVG----TVLKQ--  226 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEE-TTTSCHH----HHHHH--
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---EEEe-cCChhHH----HHHHH--
Confidence            578999999993 4 3667776766533589999999988887765    2322   1111 1111110    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                . ....+|+++.+...    ..++.+.++|+++|.+++.+.
T Consensus       227 ----------~-~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          227 ----------E-YPEGVDVVYESVGG----AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             ----------H-CTTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred             ----------h-cCCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence                      0 12469999976542    567888899999999988544

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.31  E-value=0.2  Score=42.01  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             CCCcEEEEc-cCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYG-TGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G-~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +|++||-.| +|. |..+..+++.-..+|++++.++..++.+++.    +..  .+ +. .. +.+.    +....    
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~v-i~-~~-~~~~----~~~~~----  212 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD--IV-LN-HK-ESLL----NQFKT----  212 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS--EE-EC-TT-SCHH----HHHHH----
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc--EE-EE-CC-ccHH----HHHHH----
Confidence            789999984 443 5666666665335999999999988888762    321  11 11 11 1110    00011    


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              . ..+.+|+++....   -...++.+.++|+++|.++..
T Consensus       213 --------~-~~~g~Dvv~d~~g---~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          213 --------Q-GIELVDYVFCTFN---TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             --------H-TCCCEEEEEESSC---HHHHHHHHHHHEEEEEEEEES
T ss_pred             --------h-CCCCccEEEECCC---chHHHHHHHHHhccCCEEEEE
Confidence                    1 3456999997443   245678888999999999763

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.31  E-value=0.02  Score=47.71  Aligned_cols=100  Identities=17%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      ++++++||-.|++  .|..+..+++ .+ .+|+++|.++..++.+++.    +..   ..+...+. .+.       ..+
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~----g~~---~~~~~~~~-~~~-------~~~  201 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA----GAW---QVINYREE-DLV-------ERL  201 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH----TCS---EEEETTTS-CHH-------HHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc----CCC---EEEECCCc-cHH-------HHH
Confidence            5678999999843  3455554444 45 5899999999888877652    321   11211111 110       000


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ........+|+++.+..    ...++.+.++|+++|.+++.+.
T Consensus       202 ---------~~~~~~~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          202 ---------KEITGGKKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             ---------HHHTTTCCEEEEEECSC----GGGHHHHHHTEEEEEEEEECCC
T ss_pred             ---------HHHhCCCCceEEEECCc----hHHHHHHHHHhcCCCEEEEEec
Confidence                     00112346999998765    3456788889999999988543

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.27  E-value=0.092  Score=44.12  Aligned_cols=102  Identities=16%  Similarity=0.262  Sum_probs=62.9

Q ss_pred             hcCCCcEEEEccCCC--HHHHHHHH-h-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccccc
Q 047371           56 IKGGELFLDYGTGSG--ILGIAAIK-F-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G--~~~~~la~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      ++++++||-.|+|+|  ..+..+++ . + .+|+++|.++..++.+++.    +..   ..+...+.+..     +....
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~-----~~~~~  234 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPL-----AEIRR  234 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHH-----HHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh----CCC---EEecCCCccHH-----HHHHH
Confidence            678999999999743  44444444 4 5 5899999999888877542    321   11221111100     00011


Q ss_pred             chhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                      .            ...+.+|+++.+...   ...++.+.++|+++|.+++.+..
T Consensus       235 ~------------~~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          235 I------------TESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             H------------TTTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECCSS
T ss_pred             H------------hcCCCceEEEECCCC---HHHHHHHHHHHhcCCEEEEECCC
Confidence            1            111479999976543   34678888999999999886543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.26  E-value=0.2  Score=41.77  Aligned_cols=68  Identities=6%  Similarity=-0.143  Sum_probs=42.4

Q ss_pred             CCCeeEEEeccc------cccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecc-cCCceEeeccc
Q 047371          147 TEEYDVVIANIL------LNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSE-KDDWRCVSGTK  218 (222)
Q Consensus       147 ~~~~D~v~~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~w~~~~~~k  218 (222)
                      ..++|+|+.++.      --+..++++.++++++|||.+...+.    ...++..+... |......- .+.+..+.+++
T Consensus       184 ~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYta----ag~VRR~L~~aGF~V~k~~G~g~KReml~A~~  259 (308)
T 3vyw_A          184 NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSS----SLSVRKSLLTLGFKVGSSREIGRKRKGTVASL  259 (308)
T ss_dssp             SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCC----CHHHHHHHHHTTCEEEEEECC---CEEEEEES
T ss_pred             ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeC----cHHHHHHHHHCCCEEEecCCCCCCCceeEEec
Confidence            457999998652      11346799999999999999887432    24566666654 65554432 33444455544

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.19  E-value=0.028  Score=47.35  Aligned_cols=98  Identities=9%  Similarity=0.106  Sum_probs=61.8

Q ss_pred             CCCcEEEEccCC-CHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGS-GILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|++||-.|+|. |..+..+++.-  ..+|+++|.++..++.+++.    +..  .+ +...+..       +....+  
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~v-i~~~~~~-------~~~~~~--  233 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD--YV-SEMKDAE-------SLINKL--  233 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS--EE-ECHHHHH-------HHHHHH--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC--EE-eccccch-------HHHHHh--
Confidence            799999999864 55666666542  36899999999988888652    321  11 1110000       000011  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                .....+|+++.....   ...++.+.++|+++|.++..+.
T Consensus       234 ----------~~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          234 ----------TDGLGASIAIDLVGT---EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             ----------HTTCCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             ----------hcCCCccEEEECCCC---hHHHHHHHHHhhcCCEEEEeCC
Confidence                      123379999975533   3467888899999999988543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.99  E-value=0.043  Score=45.91  Aligned_cols=101  Identities=18%  Similarity=0.218  Sum_probs=61.2

Q ss_pred             hcCCCcEEEEcc--CCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT--GSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~--G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||-.|+  |.|..+..+++....+|+++|.++..++.+++.    +..   ..+...+ ..+.    +....  
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~---~~~d~~~-~~~~----~~i~~--  208 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCH---HTINYST-QDFA----EVVRE--  208 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEEETTT-SCHH----HHHHH--
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEEECCC-HHHH----HHHHH--
Confidence            567899999996  335555555554335899999999888877642    321   1121111 1110    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ......+|+++.+...    ..++.+.++|+++|.++..+.
T Consensus       209 ----------~~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          209 ----------ITGGKGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             ----------HHTTCCEEEEEECSCT----TTHHHHHHTEEEEEEEEECCC
T ss_pred             ----------HhCCCCCeEEEECCcH----HHHHHHHHhhccCCEEEEEec
Confidence                      0123469999976643    456778889999999988543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.98  E-value=0.035  Score=46.99  Aligned_cols=100  Identities=17%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||-.|++.  |..+..+++....+|++++.++..++.+++    .+..   ..+...+. .+.       ..+ 
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~-~~~-------~~~-  231 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREV-NYI-------DKI-  231 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTST-THH-------HHH-
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCCC---EEEeCCCc-hHH-------HHH-
Confidence            56889999999733  455555555433589999999988876653    2321   11211111 110       000 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              ........+|+++.+..-    ..+..+.++|+++|.+++.+
T Consensus       232 --------~~~~~~~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          232 --------KKYVGEKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             --------HHHHCTTCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             --------HHHcCCCCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence                    000123469999976542    35677889999999998754

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=93.96  E-value=1.5  Score=36.40  Aligned_cols=126  Identities=11%  Similarity=0.044  Sum_probs=74.6

Q ss_pred             HHHHHHHHhhhcC-CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-CCceeEEecCCccccc
Q 047371           46 KLCLLLLQSLIKG-GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-PKKIKLHLVPDRTFTA  123 (222)
Q Consensus        46 ~~~~~~l~~~~~~-~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~~~~~~~~  123 (222)
                      +.+-+.++.++.. ...|+++|||-=.....+......+++=+| .|..++..++.+...+.. .++..++..|... .+
T Consensus        89 ~~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~  166 (310)
T 2uyo_A           89 NFFDTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DW  166 (310)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CH
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hH
Confidence            3344444444433 367999999986665544322236888899 588998888888654321 2466677666643 21


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCC
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                      -  +   .+.       ...+ ....--++++...+++     ...+++.+...+.||+++++..+..
T Consensus       167 ~--~---~l~-------~~g~-d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          167 P--P---ALR-------SAGF-DPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             H--H---HHH-------HTTC-CTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             H--H---HHH-------hccC-CCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            0  1   100       0001 1223345555555554     3457888888889999999976544

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.89  E-value=0.16  Score=42.75  Aligned_cols=100  Identities=11%  Similarity=0.102  Sum_probs=61.3

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++||-.|+ | .|..+..+++....+|+++|.++..++.+++.    +..   ..+...+ ..+.    +..    
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~-~~~~----~~~----  228 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAK---RGINYRS-EDFA----AVI----  228 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEEETTT-SCHH----HHH----
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEeCCc-hHHH----HHH----
Confidence            568899998853 3 25566666655345899999999988888652    321   1121111 1110    000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              .... .+.+|+++.+..-.    .++.+.+.|+++|.+++.+.
T Consensus       229 --------~~~~-~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          229 --------KAET-GQGVDIILDMIGAA----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             --------HHHH-SSCEEEEEESCCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred             --------HHHh-CCCceEEEECCCHH----HHHHHHHHhccCCEEEEEEe
Confidence                    0111 34699999766532    56777889999999988543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.75  E-value=0.022  Score=47.94  Aligned_cols=100  Identities=17%  Similarity=0.143  Sum_probs=61.8

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|++  .|..+..+++.-..+|++++.++..++.+++.    +..  .+ + ... ..+.    +....  
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~--~v-~-~~~-~~~~----~~v~~--  221 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GAD--IV-L-PLE-EGWA----KAVRE--  221 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS--EE-E-ESS-TTHH----HHHHH--
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc--EE-e-cCc-hhHH----HHHHH--
Confidence            5689999999973  36666666665345999999999888877652    322  11 1 111 1110    11111  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ......+|+++.+...    ..+..+.++|+++|.+++.+.
T Consensus       222 ----------~~~~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          222 ----------ATGGAGVDMVVDPIGG----PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             ----------HTTTSCEEEEEESCC------CHHHHHHTEEEEEEEEEC--
T ss_pred             ----------HhCCCCceEEEECCch----hHHHHHHHhhcCCCEEEEEEc
Confidence                      1133479999976543    256778889999999998543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=93.68  E-value=0.047  Score=46.25  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=59.0

Q ss_pred             hc-CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IK-GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~-~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      ++ +|++||-.|+|. |..+..+++. + .+|+++|.++..++.+++.   .+..  .+ +...+.+..           
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~Vi~~~~~~~~~~~~~~~---lGa~--~v-i~~~~~~~~-----------  238 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSNKKREEALQD---LGAD--DY-VIGSDQAKM-----------  238 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSTTHHHHHHTT---SCCS--CE-EETTCHHHH-----------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHH---cCCc--ee-eccccHHHH-----------
Confidence            55 899999998754 4555556654 5 5899999999887776532   2322  11 111110000           


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ..  ..+.+|+++......   ..++.+.++|+++|.++..+.
T Consensus       239 ---------~~--~~~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          239 ---------SE--LADSLDYVIDTVPVH---HALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ---------HH--STTTEEEEEECCCSC---CCSHHHHTTEEEEEEEEECSC
T ss_pred             ---------HH--hcCCCCEEEECCCCh---HHHHHHHHHhccCCEEEEeCC
Confidence                     00  123699999755432   234556789999999988654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.66  E-value=0.058  Score=45.67  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=60.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++||-.|+|. |..+..+++.-..+|+++|.++..++.+++    .+..  .+ +...+...+       ...   
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~----lGa~--~v-~~~~~~~~~-------~~~---  239 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGAD--HY-IATLEEGDW-------GEK---  239 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS--EE-EEGGGTSCH-------HHH---
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH----cCCC--EE-EcCcCchHH-------HHH---
Confidence            67899999999854 556666665423479999999988888765    2322  11 211111010       000   


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               + . +.+|+++....... ...++.+.++|+++|.++..+.
T Consensus       240 ---------~-~-~~~D~vid~~g~~~-~~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          240 ---------Y-F-DTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ---------S-C-SCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECCC
T ss_pred             ---------h-h-cCCCEEEECCCCCc-HHHHHHHHHHhcCCCEEEEecC
Confidence                     1 1 47999997554300 1235567789999999887543

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=93.56  E-value=0.8  Score=37.74  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             CCeeEEEecccc----ccHH----------HHHHHHHHcccCCeEEEEecCCCC--cHHHHHHHHHhhhhcceec
Q 047371          148 EEYDVVIANILL----NPLP----------QLADHIVSYAKPGAVVGISGILSE--QLPRIINRYSEFLEDILVS  206 (222)
Q Consensus       148 ~~~D~v~~~~~~----~~~~----------~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~  206 (222)
                      +++|+|++|..-    +++.          -++..+.++|+|||.+++..+...  ..+++...+...|......
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~v  279 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVC  279 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEE
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeee
Confidence            679999997642    2322          146888999999999999877666  7899999999987666543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.52  E-value=1.4  Score=37.08  Aligned_cols=123  Identities=15%  Similarity=0.118  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCC--------------
Q 047371           44 TTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNI--------------  106 (222)
Q Consensus        44 ~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~--------------  106 (222)
                      .++.+-+.+.+++  .+...|+.+|||.......+... +...++-+|. |..++.-++.+...+.              
T Consensus        81 Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~  159 (334)
T 1rjd_A           81 RTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAK  159 (334)
T ss_dssp             HHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccc
Confidence            4444455555544  35578999999999988887764 4566777777 7777777776654310              


Q ss_pred             -----CCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCC
Q 047371          107 -----GPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPG  176 (222)
Q Consensus       107 -----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lkpg  176 (222)
                           ..++..++..|.....+     ...+        +..........++++-.++..     ...+++.+.+.. |+
T Consensus       160 ~~~~~~~~~~~~v~~DL~d~~w-----~~~l--------l~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~  225 (334)
T 1rjd_A          160 SPFLIDQGRYKLAACDLNDITE-----TTRL--------LDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SH  225 (334)
T ss_dssp             TTEEEECSSEEEEECCTTCHHH-----HHHH--------HHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SS
T ss_pred             cccccCCCceEEEecCCCCcHH-----HHHH--------HHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CC
Confidence                 11356666666654321     0010        011112234577777666554     345677777776 67


Q ss_pred             eEEEE
Q 047371          177 AVVGI  181 (222)
Q Consensus       177 G~l~~  181 (222)
                      |.+++
T Consensus       226 ~~~v~  230 (334)
T 1rjd_A          226 GLWIS  230 (334)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            76654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.47  E-value=1.1  Score=32.07  Aligned_cols=92  Identities=9%  Similarity=0.066  Sum_probs=51.5

Q ss_pred             CCcEEEEccCCCHHHHHHH----HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           59 GELFLDYGTGSGILGIAAI----KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++-+|+|.  ++..++    +.+ .+|+++|.++..++.++..    +     ..+..+|.....     .....  
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~~----~-----~~~~~gd~~~~~-----~l~~~--   66 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAG-KKVLAVDKSKEKIELLEDE----G-----FDAVIADPTDES-----FYRSL--   66 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT----T-----CEEEECCTTCHH-----HHHHS--
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHC----C-----CcEEECCCCCHH-----HHHhC--
Confidence            46788888854  444433    444 5899999999887776542    2     335556554321     00111  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                                 ....+|+++...+-......+....+.+. ...++.
T Consensus        67 -----------~~~~~d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia  101 (141)
T 3llv_A           67 -----------DLEGVSAVLITGSDDEFNLKILKALRSVS-DVYAIV  101 (141)
T ss_dssp             -----------CCTTCSEEEECCSCHHHHHHHHHHHHHHC-CCCEEE
T ss_pred             -----------CcccCCEEEEecCCHHHHHHHHHHHHHhC-CceEEE
Confidence                       23468999886653322333444444455 445554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.41  E-value=0.066  Score=44.25  Aligned_cols=37  Identities=14%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             CCCCeeEEEecccccc-----------------------HHHHHHHHHHcccCCeEEEEe
Q 047371          146 ETEEYDVVIANILLNP-----------------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ++++||+|++|||+..                       +..++.++.++|||||.+++.
T Consensus        37 ~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           37 PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            5678999999999842                       124578899999999999885

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=93.38  E-value=0.05  Score=45.97  Aligned_cols=101  Identities=10%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|++  .|..+..+++....+|+++|.++..++.+++.    +..   ..+...+. .+       ...+ 
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~-~~-------~~~~-  223 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAA---AGFNYKKE-DF-------SEAT-  223 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTS-CH-------HHHH-
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEEecCCh-HH-------HHHH-
Confidence            5678999999853  34555555554335899999999888877432    321   11211111 11       0000 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              ........+|+++.+....    .+..+.++|+++|.+++.+.
T Consensus       224 --------~~~~~~~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          224 --------LKFTKGAGVNLILDCIGGS----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             --------HHHTTTSCEEEEEESSCGG----GHHHHHHHEEEEEEEEECCC
T ss_pred             --------HHHhcCCCceEEEECCCch----HHHHHHHhccCCCEEEEEec
Confidence                    0011234699999876542    45667889999999998654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=93.36  E-value=0.059  Score=45.35  Aligned_cols=96  Identities=15%  Similarity=0.101  Sum_probs=60.6

Q ss_pred             hcCCCcEEEEcc-CC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ |. |..+..+++....+|+++ .++..++.+++    .+..   . +.  ....+.    +....  
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~----lGa~---~-i~--~~~~~~----~~~~~--  210 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRD----LGAT---P-ID--ASREPE----DYAAE--  210 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHH----HTSE---E-EE--TTSCHH----HHHHH--
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHH----cCCC---E-ec--cCCCHH----HHHHH--
Confidence            568999999994 32 666666776544589999 88888777754    2332   1 22  211111    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                ......+|+++.+..-    ..+..+.++|+++|.++..
T Consensus       211 ----------~~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          211 ----------HTAGQGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             ----------HHTTSCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred             ----------HhcCCCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence                      1134579999976542    5677888899999999874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.13  E-value=0.17  Score=42.86  Aligned_cols=98  Identities=13%  Similarity=0.086  Sum_probs=58.1

Q ss_pred             hc-CCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IK-GGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~-~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++ +|++||-.|+|. |..+..+++.-..+|++++.++..++.+++.   .+..  . .+...+.+.        ...  
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa~--~-v~~~~~~~~--------~~~--  247 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGAD--S-FLVSRDQEQ--------MQA--  247 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCCS--E-EEETTCHHH--------HHH--
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCCc--e-EEeccCHHH--------HHH--
Confidence            45 899999998754 4555555554335899999999887776532   2321  1 111111000        000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  ..+.+|+++.......   .++.+.++++++|.++..+.
T Consensus       248 ------------~~~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          248 ------------AAGTLDGIIDTVSAVH---PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             ------------TTTCEEEEEECCSSCC---CSHHHHHHEEEEEEEEECCC
T ss_pred             ------------hhCCCCEEEECCCcHH---HHHHHHHHHhcCCEEEEEcc
Confidence                        1246999997654321   23456678899999887543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=92.87  E-value=0.089  Score=46.10  Aligned_cols=117  Identities=17%  Similarity=0.167  Sum_probs=63.9

Q ss_pred             hcCCCcEEEEcc-CC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ |. |..+..+++....++++++.++..++.+++.    |..  . .+...+. .+.....+......
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~--~-vi~~~~~-d~~~~~~~~~~~~~  297 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE--A-IIDRNAE-GYRFWKDENTQDPK  297 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC--E-EEETTTT-TCCSEEETTEECHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc--E-EEecCcC-cccccccccccchH
Confidence            568999999997 43 6677777775446899999999888888652    322  1 1111111 00000000000000


Q ss_pred             h-ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 E-YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~-~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      + .+-...+........+|+++....-    ..+..+.++|+++|.+++.+.
T Consensus       298 ~~~~~~~~i~~~t~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          298 EWKRFGKRIRELTGGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEec
Confidence            0 0000000111133579999975432    567888889999999998543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.85  E-value=0.17  Score=41.88  Aligned_cols=88  Identities=14%  Similarity=0.043  Sum_probs=55.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++||-.|+|. |..+..+++.-..+|++++ +++.++.+++.    |..  .+ +  .+   ..            
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga~--~v-~--~d---~~------------  194 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GVR--HL-Y--RE---PS------------  194 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TEE--EE-E--SS---GG------------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CCC--EE-E--cC---HH------------
Confidence            56899999999954 6666666664234999999 98888887652    321  11 1  11   10            


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              .  -.+.+|+++....-    ..+..+.++|+++|.++..
T Consensus       195 --------~--v~~g~Dvv~d~~g~----~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          195 --------Q--VTQKYFAIFDAVNS----QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             --------G--CCSCEEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             --------H--hCCCccEEEECCCc----hhHHHHHHHhcCCCEEEEE
Confidence                    0  14569999964322    2236678899999998875

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.84  E-value=0.09  Score=43.76  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=59.7

Q ss_pred             hcCCC-cEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGE-LFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~-~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +++++ +||-.|+ | .|..+..+++....++++++.++..++.+++    .+..  .+ +...+.. .     ...   
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~--~~-i~~~~~~-~-----~~~---  209 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK--EV-LAREDVM-A-----ERI---  209 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS--EE-EECC----------------
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc--EE-EecCCcH-H-----HHH---
Confidence            55675 8999997 3 3666676766533579999999888877754    2322  11 1111110 0     000   


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ... ..+.+|+++.+..-    ..++.+.++++++|.+++.+.
T Consensus       210 ---------~~~-~~~~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          210 ---------RPL-DKQRWAAAVDPVGG----RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             -----------C-CSCCEEEEEECSTT----TTHHHHHHTEEEEEEEEECSC
T ss_pred             ---------HHh-cCCcccEEEECCcH----HHHHHHHHhhccCCEEEEEee
Confidence                     001 23469999976543    246778889999999988644

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.82  E-value=0.33  Score=40.84  Aligned_cols=99  Identities=17%  Similarity=0.165  Sum_probs=62.8

Q ss_pred             hcCC------CcEEEEccCC-CHHH-HHHH-Hh-CCCEEEEEeCChH---HHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           56 IKGG------ELFLDYGTGS-GILG-IAAI-KF-GAAMFVGVDIDPQ---VIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        56 ~~~~------~~vLD~G~G~-G~~~-~~la-~~-~~~~v~gvD~s~~---~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      +++|      ++||-.|+|. |..+ ..++ +. +..+|+++|.++.   .++.+++    .|..  .+   ......+ 
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~--~v---~~~~~~~-  233 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDAT--YV---DSRQTPV-  233 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTCE--EE---ETTTSCG-
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCCc--cc---CCCccCH-
Confidence            6688      9999999854 5666 7777 54 5445999999987   7777754    2321  11   1111111 


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                            .. +         ..+ . +.+|+++.....   ...++.+.++|+++|.+++.+..
T Consensus       234 ------~~-i---------~~~-~-gg~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          234 ------ED-V---------PDV-Y-EQMDFIYEATGF---PKHAIQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             ------GG-H---------HHH-S-CCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             ------HH-H---------HHh-C-CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEeCC
Confidence                  00 1         111 1 279999965432   34678888999999999986543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.81  E-value=0.15  Score=42.70  Aligned_cols=98  Identities=20%  Similarity=0.282  Sum_probs=59.6

Q ss_pred             CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++. .      +.+ +...+ ..+.    +.   +   
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a------~~v-~~~~~-~~~~----~~---~---  224 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A------DRL-VNPLE-EDLL----EV---V---  224 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C------SEE-ECTTT-SCHH----HH---H---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H------Hhc-cCcCc-cCHH----HH---H---
Confidence            899999999854 5556666664 544899999998777666442 1      111 11111 1110    00   0   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                            .... ...+|+++.....   ...++.+.++|+++|.+++.+.
T Consensus       225 ------~~~~-~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          225 ------RRVT-GSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             ------HHHH-SSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             ------HHhc-CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence                  0011 3469999975532   3567888899999999988544

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.67  E-value=0.083  Score=44.01  Aligned_cols=98  Identities=12%  Similarity=0.167  Sum_probs=60.1

Q ss_pred             hcCCC-cEEEEcc-C-CCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccccc
Q 047371           56 IKGGE-LFLDYGT-G-SGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        56 ~~~~~-~vLD~G~-G-~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      +++++ +||-.|+ | .|..+..+++. + .++++++.++..++.+++    .+..  .+ +...+.. .     ..   
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~----lGa~--~v-~~~~~~~-~-----~~---  209 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQ----LGAS--EV-ISREDVY-D-----GT---  209 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHH----HTCS--EE-EEHHHHC-S-----SC---
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----cCCc--EE-EECCCch-H-----HH---
Confidence            55675 8999997 3 35666666654 5 579999999888877764    2322  11 1111100 0     00   


Q ss_pred             chhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               .... ..+.+|+++....-    ..+..+.++++++|.+++.+.
T Consensus       210 ---------~~~~-~~~~~d~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          210 ---------LKAL-SKQQWQGAVDPVGG----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             ---------CCSS-CCCCEEEEEESCCT----HHHHHHHTTEEEEEEEEECCC
T ss_pred             ---------HHHh-hcCCccEEEECCcH----HHHHHHHHhhcCCCEEEEEec
Confidence                     0011 23469999975532    367888899999999988644

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.58  E-value=0.084  Score=44.26  Aligned_cols=37  Identities=14%  Similarity=0.164  Sum_probs=31.5

Q ss_pred             CCCCeeEEEecccccc-----------------HHHHHHHHHHcccCCeEEEEe
Q 047371          146 ETEEYDVVIANILLNP-----------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +.++||+|+++||+..                 +.+.+..+.++|||||.+++.
T Consensus        30 ~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           30 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            5678999999999842                 456789999999999999985

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.17  E-value=1.6  Score=32.58  Aligned_cols=97  Identities=12%  Similarity=0.040  Sum_probs=53.2

Q ss_pred             CCcEEEEccCC-CH-HHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           59 GELFLDYGTGS-GI-LGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        59 ~~~vLD~G~G~-G~-~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +.+|+-+|+|. |. ++..|.+. + .+|+++|.++..++.++.    .+.     ....+|......            
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~----~g~-----~~~~gd~~~~~~------------   96 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRS----EGR-----NVISGDATDPDF------------   96 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHH----TTC-----CEEECCTTCHHH------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHH----CCC-----CEEEcCCCCHHH------------
Confidence            56898888764 32 23334444 5 579999999988766543    232     244444432110            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                           +........+|+|+...+-......+-...+.+.|++.++..
T Consensus        97 -----l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A           97 -----WERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             -----HHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             -----HHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence                 000001345899997544333333333455566777777764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.15  E-value=0.31  Score=44.98  Aligned_cols=53  Identities=9%  Similarity=0.048  Sum_probs=35.5

Q ss_pred             CCCeeEEEeccccc------cHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcc
Q 047371          147 TEEYDVVIANILLN------PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDI  203 (222)
Q Consensus       147 ~~~~D~v~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~  203 (222)
                      ...+|.++.++.-.      +..+++..+.++++|||.+......    ..+.+.+.+. |...
T Consensus       169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~----~~vr~~l~~aGf~~~  228 (689)
T 3pvc_A          169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA----GFVRRGLQQAGFNVT  228 (689)
T ss_dssp             TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC----HHHHHHHHHTTCEEE
T ss_pred             CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc----HHHHHHHHhCCeEEE
Confidence            46799999865322      2477999999999999988764322    3455555443 5433

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=92.08  E-value=0.18  Score=41.37  Aligned_cols=94  Identities=11%  Similarity=0.073  Sum_probs=59.5

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ | .|..+..+++....+|++++.++..++.+++    .+..  .+ +...+...+.        .  
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~--~~-~~~~~~~~~~--------~--  185 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE--EA-ATYAEVPERA--------K--  185 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS--EE-EEGGGHHHHH--------H--
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC--EE-EECCcchhHH--------H--
Confidence            678999999997 3 3566666666533599999999988877754    2321  11 1111000010        0  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                  ..+.+|+++. ...    ..++.+.++++++|.++..+
T Consensus       186 ------------~~~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          186 ------------AWGGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             ------------HTTSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             ------------HhcCceEEEE-CCH----HHHHHHHHhhccCCEEEEEe
Confidence                        1156999997 433    35678888999999988743

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.90  E-value=1.5  Score=34.95  Aligned_cols=60  Identities=12%  Similarity=0.033  Sum_probs=42.2

Q ss_pred             CCCcEEEEccCC--C---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           58 GGELFLDYGTGS--G---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        58 ~~~~vLD~G~G~--G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      +|+++|-.|+++  |   .++..+++.| .+|+.++.++..++.+.+.+...+-  .++.+...|...
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~G-a~Vvi~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   69 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLG-AKLVFTYRKERSRKELEKLLEQLNQ--PEAHLYQIDVQS   69 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHGGGTC--SSCEEEECCTTC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC--CcEEEEEccCCC
Confidence            588999999754  4   2455666676 6899999999888888776655442  256666777644

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=91.89  E-value=1.1  Score=36.85  Aligned_cols=94  Identities=14%  Similarity=0.094  Sum_probs=57.5

Q ss_pred             hcCCCcEEEEc-cCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYG-TGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G-~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.| +|. |..+..+++.-..++++++ ++..++.+++    .+..  . .+...+.+.+..          
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~--~-~i~~~~~~~~~~----------  211 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE--Q-CINYHEEDFLLA----------  211 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS--E-EEETTTSCHHHH----------
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC--E-EEeCCCcchhhh----------
Confidence            67899999986 554 6777777765345899887 5555555543    3432  1 121111110100          


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                  ....+|+++....-    ..+..+.++|+++|.++..+
T Consensus       212 ------------~~~g~D~v~d~~g~----~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          212 ------------ISTPVDAVIDLVGG----DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             ------------CCSCEEEEEESSCH----HHHHHHGGGEEEEEEEEECC
T ss_pred             ------------hccCCCEEEECCCc----HHHHHHHHhccCCCEEEEeC
Confidence                        22569999965432    23478899999999999854

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.85  E-value=1.5  Score=34.92  Aligned_cols=61  Identities=16%  Similarity=0.154  Sum_probs=43.3

Q ss_pred             CCCcEEEEcc-CCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGT-GSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~-G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|+ |.|   .++..+++.+ .+|+.++.++..++.+.+.+...+-  .++.+...|....
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~   85 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERRLGETRDQLADLGL--GRVEAVVCDVTST   85 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCS--SCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCC--CceEEEEeCCCCH
Confidence            4778898887 555   2555666666 6799999999888887776654432  3677888877554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.81  E-value=0.94  Score=39.25  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=58.2

Q ss_pred             CCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ..+|+-+|+|. |. ++..|...+ ..|+++|.++..++.++.    .+     +.++.+|+....     .+...    
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~----~g-----~~vi~GDat~~~-----~L~~a----   64 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRK----FG-----MKVFYGDATRMD-----LLESA----   64 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHH----TT-----CCCEESCTTCHH-----HHHHT----
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHh----CC-----CeEEEcCCCCHH-----HHHhc----
Confidence            45688888754 32 222333344 579999999999888764    23     336677765431     11111    


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                               ....+|++++...-......+-...+.+.|...++.
T Consensus        65 ---------gi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           65 ---------GAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             ---------TTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             ---------CCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence                     345689888755444344456666777788877766

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.78  E-value=0.15  Score=41.29  Aligned_cols=37  Identities=11%  Similarity=0.091  Sum_probs=30.7

Q ss_pred             CCCCeeEEEecccccc-----------------HHHHHHHHHHcccCCeEEEEe
Q 047371          146 ETEEYDVVIANILLNP-----------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +.++||+|+++||+..                 +...+..+.++|+|+|.+++.
T Consensus        20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A           20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            4678999999999842                 345688889999999999986

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=91.70  E-value=1.8  Score=36.97  Aligned_cols=134  Identities=15%  Similarity=0.168  Sum_probs=81.3

Q ss_pred             HHHHHHhhh-cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           48 CLLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        48 ~~~~l~~~~-~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      ..++|.+.+ +-+.+||.++-+.|.++..+.  +..+++.+.-+-.....    +..+++..   ..  ...  ..    
T Consensus        34 ~~~~l~~~~~~~~~~~l~~n~~~g~~~~~~~--~~~~~~~~~~~~~~~~~----l~~~~~~~---~~--~~~--~~----   96 (381)
T 3dmg_A           34 VHDLLQKTVEPFGERALDLNPGVGWGSLPLE--GRMAVERLETSRAAFRC----LTASGLQA---RL--ALP--WE----   96 (381)
T ss_dssp             HHHHHHTTCCCCSSEEEESSCTTSTTTGGGB--TTBEEEEEECBHHHHHH----HHHTTCCC---EE--CCG--GG----
T ss_pred             HHHHHHHHHHHhCCcEEEecCCCCccccccC--CCCceEEEeCcHHHHHH----HHHcCCCc---cc--cCC--cc----
Confidence            344444443 345789999999998776553  22466766544433322    55567641   11  110  10    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEeccccc----cHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhc
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLN----PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLED  202 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  202 (222)
                                        .....||+|+.-.|-+    .....+.++.+.|+|||.+++.+-.....+++...+...+..
T Consensus        97 ------------------~~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~~~~~~  158 (381)
T 3dmg_A           97 ------------------AAAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARALLGY  158 (381)
T ss_dssp             ------------------SCTTCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHHHHSC
T ss_pred             ------------------CCcCCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHHhhhcc
Confidence                              0456799999877742    245678889999999999999876667777777777654333


Q ss_pred             cee-cccCCceEeec
Q 047371          203 ILV-SEKDDWRCVSG  216 (222)
Q Consensus       203 ~~~-~~~~~w~~~~~  216 (222)
                      ... .....|.|...
T Consensus       159 ~~~~~~~~~~r~~~~  173 (381)
T 3dmg_A          159 GVVVRREGPYRVALL  173 (381)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             ccccccccCcEEEEE
Confidence            222 22344554443

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.67  E-value=1.3  Score=35.65  Aligned_cols=86  Identities=14%  Similarity=0.118  Sum_probs=56.0

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+.+|--|++.|.   ++..+++.| .+|+.+|.+++.++.+.+.+...+.   ++.....|..... .......... 
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~l~~~g~---~~~~~~~Dv~~~~-~v~~~~~~~~-   81 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAG-ARVILNDIRATLLAESVDTLTRKGY---DAHGVAFDVTDEL-AIEAAFSKLD-   81 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHHHTTC---CEEECCCCTTCHH-HHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEeeCCCHH-HHHHHHHHHH-
Confidence            58888888888772   555666676 6899999999999888777766553   4556666664431 1111111111 


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                ...++.|+++.|...
T Consensus        82 ----------~~~G~iDiLVNNAG~   96 (255)
T 4g81_D           82 ----------AEGIHVDILINNAGI   96 (255)
T ss_dssp             ----------HTTCCCCEEEECCCC
T ss_pred             ----------HHCCCCcEEEECCCC
Confidence                      145679999988654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.42  E-value=0.71  Score=33.78  Aligned_cols=100  Identities=15%  Similarity=0.042  Sum_probs=52.4

Q ss_pred             cCCCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++|+-+|+|. |. ++..+...+ .+|+++|.++..++.++.   ..     .......+.....     .+...  
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g-~~V~vid~~~~~~~~~~~---~~-----g~~~~~~d~~~~~-----~l~~~--   80 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNS---EF-----SGFTVVGDAAEFE-----TLKEC--   80 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGGGGSCT---TC-----CSEEEESCTTSHH-----HHHTT--
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHh---cC-----CCcEEEecCCCHH-----HHHHc--
Confidence            3578899998764 33 222333445 589999999865443221   11     2223334332210     00000  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                 ....+|+|+...+.......+..+.+.+.+...++...
T Consensus        81 -----------~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           81 -----------GMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             -----------TGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             -----------CcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence                       13458999986554444444555555556666666643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.40  E-value=3  Score=34.50  Aligned_cols=90  Identities=20%  Similarity=0.170  Sum_probs=59.0

Q ss_pred             CcEEEEccCC-C-HHHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           60 ELFLDYGTGS-G-ILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        60 ~~vLD~G~G~-G-~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++|.=+|+|. | .++..+.+.+. .+|+++|.++..++.+.+    .+..    .....+...+               
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~----~~~~~~~~~~---------------   90 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGII----DEGTTSIAKV---------------   90 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSC----SEEESCTTGG---------------
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCc----chhcCCHHHH---------------
Confidence            5788898875 3 35555656653 289999999988777653    2321    0111111110               


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                               .....|+|+...+.....++++++...++++..++-
T Consensus        91 ---------~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A           91 ---------EDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             ---------GGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             ---------hhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEE
Confidence                     023479999887777788889999999999876654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.17  E-value=1.1  Score=36.63  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+.+|--|++.|.   ++..+++.| .+|+.+|.+++.++.+.+.+   +   .+......|..... .........++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~~---g---~~~~~~~~Dv~~~~-~v~~~~~~~~~   99 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEG-ARVFITGRRKDVLDAAIAEI---G---GGAVGIQADSANLA-ELDRLYEKVKA   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH---C---TTCEEEECCTTCHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHc---C---CCeEEEEecCCCHH-HHHHHHHHHHH
Confidence            58899999988873   555666666 68999999999887765543   2   24445566664431 11111111111


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                                 ..++.|+++.|.....                      .-.+.+.+...++.+|.++.
T Consensus       100 -----------~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIn  157 (273)
T 4fgs_A          100 -----------EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVL  157 (273)
T ss_dssp             -----------HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             -----------HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEE
Confidence                       3467999998865321                      01135777888888888776

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.85  E-value=2.3  Score=34.11  Aligned_cols=108  Identities=21%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCC------------hHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDID------------PQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.+            ...++.+...+...+   .++.+...|.....
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG---RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT---SCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcC---CceEEEEccCCCHH
Confidence            4778888887765   2444555566 689999987            666666665555443   35677777765431


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccccc--------------------HHHHHHHHHHcccCCeEEEE
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      . +........+           ..++.|+++.|.....                    .-.+.+.+...++.+|.++.
T Consensus        85 ~-v~~~~~~~~~-----------~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~  151 (287)
T 3pxx_A           85 A-VSRELANAVA-----------EFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIIT  151 (287)
T ss_dssp             H-HHHHHHHHHH-----------HHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             H-HHHHHHHHHH-----------HcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence            0 1111111100           1246899998765321                    11245777777788888776

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.82  E-value=3  Score=29.10  Aligned_cols=93  Identities=16%  Similarity=0.124  Sum_probs=50.1

Q ss_pred             CCcEEEEccCCCHHHHHH----HHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           59 GELFLDYGTGSGILGIAA----IKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~l----a~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|+-+|+|  .++..+    .+.+ .+|+++|.++..++.+...   .+     +.+...+......     ...   
T Consensus         4 ~m~i~IiG~G--~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~---~~-----~~~~~~d~~~~~~-----l~~---   64 (140)
T 1lss_A            4 GMYIIIAGIG--RVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAE---ID-----ALVINGDCTKIKT-----LED---   64 (140)
T ss_dssp             -CEEEEECCS--HHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---CS-----SEEEESCTTSHHH-----HHH---
T ss_pred             CCEEEEECCC--HHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHh---cC-----cEEEEcCCCCHHH-----HHH---
Confidence            4578888764  444443    3344 5799999998876655432   12     2233444322110     000   


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                                .....+|+|+...+.......+..+.+.+.++. ++.
T Consensus        65 ----------~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~-ii~  100 (140)
T 1lss_A           65 ----------AGIEDADMYIAVTGKEEVNLMSSLLAKSYGINK-TIA  100 (140)
T ss_dssp             ----------TTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCC-EEE
T ss_pred             ----------cCcccCCEEEEeeCCchHHHHHHHHHHHcCCCE-EEE
Confidence                      023468999987655444444555666677764 444

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=90.78  E-value=0.14  Score=43.38  Aligned_cols=94  Identities=15%  Similarity=0.182  Sum_probs=58.0

Q ss_pred             CCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCCh---HHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           59 GELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDP---QVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        59 ~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~---~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      |++||-.|+|. |..+..+++ .+. +|+++|.++   ..++.+++    .+..  .+  . .+  .+.    +   .+ 
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga~--~v--~-~~--~~~----~---~~-  240 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKTN--YY--N-SS--NGY----D---KL-  240 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTCE--EE--E-CT--TCS----H---HH-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCCc--ee--c-hH--HHH----H---HH-
Confidence            99999999843 444555554 454 999999998   77776654    2321  12  1 11  110    0   00 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHH-HHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLA-DHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~  185 (222)
                              .. .. +.+|+++.+....   ..+ +.+.+.|+++|.+++.+..
T Consensus       241 --------~~-~~-~~~d~vid~~g~~---~~~~~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          241 --------KD-SV-GKFDVIIDATGAD---VNILGNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             --------HH-HH-CCEEEEEECCCCC---THHHHHHGGGEEEEEEEEECSCC
T ss_pred             --------HH-hC-CCCCEEEECCCCh---HHHHHHHHHHHhcCCEEEEEecC
Confidence                    00 02 4699999866542   245 7888999999999886543

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=90.68  E-value=0.44  Score=46.02  Aligned_cols=42  Identities=17%  Similarity=0.094  Sum_probs=35.6

Q ss_pred             CcEEEEccCCCHHHHHHHHhCC-CEEEEEeCChHHHHHHHHHH
Q 047371           60 ELFLDYGTGSGILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~  101 (222)
                      .+++|++||.|.++.-+.+.|. ..+.++|+++.+.+..+.|.
T Consensus       541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~  583 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN  583 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred             CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            4799999999999998877776 57889999999888777664

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=90.59  E-value=0.77  Score=39.84  Aligned_cols=112  Identities=20%  Similarity=0.143  Sum_probs=62.3

Q ss_pred             hcCCCcEEEEcc-CC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec--CCccccccc----cc
Q 047371           56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV--PDRTFTASM----NE  127 (222)
Q Consensus        56 ~~~~~~vLD~G~-G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~--~~~~~~~~~----~~  127 (222)
                      +++|++||-.|+ |. |..+..+++....++++++.++..++.+++    .+..  . .+...  +......+.    ..
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~--~-~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCD--L-VINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCC--C-EEEHHHHTCCTTGGGCHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC--E-EEecccccccccccccccccch
Confidence            568999999987 32 566666666544689999999988887754    2432  1 11111  100000000    00


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ....+     ...+... ....+|+++.+...    ..++.+.++++++|.+++.+.
T Consensus       291 ~~~~~-----~~~v~~~-~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          291 TGRKL-----AKLVVEK-AGREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHH-----HHHHHHH-HSSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESCC
T ss_pred             hhhHH-----HHHHHHH-hCCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEec
Confidence            00000     0000111 13469999976543    457788889999999998543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=90.50  E-value=0.21  Score=41.88  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=31.0

Q ss_pred             CCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEe
Q 047371          146 ETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +.+++|+|+++||+..              +...+..+.++|+|+|.+++.
T Consensus        55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            5678999999999852              345678889999999999985

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=90.26  E-value=0.87  Score=36.76  Aligned_cols=85  Identities=16%  Similarity=0.105  Sum_probs=56.5

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+.+|--|++.|.   ++..+++.+ .+|+.+|.+++.++.+.+.+...+.   ++.+...|..... .........++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~G-a~Vv~~~~~~~~~~~~~~~i~~~g~---~~~~~~~Dvt~~~-~v~~~~~~~~~   80 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALND-SIVVAVELLEDRLNQIVQELRGMGK---EVLGVKADVSKKK-DVEEFVRRTFE   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTSHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEccCCCHH-HHHHHHHHHHH
Confidence            58899999988873   555666666 6899999999999888887776653   5667777765442 11111111111


Q ss_pred             ccccccccCCCCCCCeeEEEeccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                                 ..++.|+++.|..
T Consensus        81 -----------~~G~iDiLVNNAG   93 (254)
T 4fn4_A           81 -----------TYSRIDVLCNNAG   93 (254)
T ss_dssp             -----------HHSCCCEEEECCC
T ss_pred             -----------HcCCCCEEEECCc
Confidence                       3467899998764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.25  E-value=3.5  Score=31.73  Aligned_cols=92  Identities=11%  Similarity=-0.048  Sum_probs=53.9

Q ss_pred             cEEEEccCCCHHHHHHH----HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           61 LFLDYGTGSGILGIAAI----KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +|+-+|+  |.++..++    +.+ ..|+++|.++..++.....   .     ...+..+|.....     .+...    
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~---~-----~~~~i~gd~~~~~-----~l~~a----   61 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKK---L-----KATIIHGDGSHKE-----ILRDA----   61 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHH---S-----SSEEEESCTTSHH-----HHHHH----
T ss_pred             EEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHH---c-----CCeEEEcCCCCHH-----HHHhc----
Confidence            4666665  55555444    344 5799999999887765432   1     2346666664421     01111    


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                               ....+|++++..+-+.....+..+.+.+.+...++.
T Consensus        62 ---------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           62 ---------EVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             ---------TCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             ---------CcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence                     245689999866555444556666666666666665

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=89.95  E-value=1.4  Score=40.35  Aligned_cols=49  Identities=10%  Similarity=0.075  Sum_probs=33.9

Q ss_pred             CCCeeEEEecccc------ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          147 TEEYDVVIANILL------NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       147 ~~~~D~v~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                      ...||.++.++.-      -+..+++..+.++++|||.+...+..    ..+.+.+.+.
T Consensus       177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~----~~vr~~L~~a  231 (676)
T 3ps9_A          177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA----GFVRRGLQDA  231 (676)
T ss_dssp             TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCC----HHHHHHHHHH
T ss_pred             CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCc----HHHHHHHHhC
Confidence            4679999986522      22567899999999999998875433    3445555443

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.81  E-value=2.2  Score=35.29  Aligned_cols=113  Identities=14%  Similarity=0.070  Sum_probs=65.2

Q ss_pred             CCCcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ...+|.-+|+|. | .++..+++.+ .+|+.+ .+++.++..++.    ++.     ....+. .+...+.. ..     
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G-~~V~l~-~~~~~~~~i~~~----g~~-----~~~~~~-~~~~~~~~-~~-----   79 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAG-HEVILI-ARPQHVQAIEAT----GLR-----LETQSF-DEQVKVSA-SS-----   79 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTT-CEEEEE-CCHHHHHHHHHH----CEE-----EECSSC-EEEECCEE-ES-----
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCC-CeEEEE-EcHhHHHHHHhC----CeE-----EEcCCC-cEEEeeee-eC-----
Confidence            356799999986 4 3555666665 478888 888777766543    211     110000 00000000 00     


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHH
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINR  195 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  195 (222)
                             +......+|+|+..-+.....++++.+...++++..++.....-...+.+.+.
T Consensus        80 -------~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~  132 (318)
T 3hwr_A           80 -------DPSAVQGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRSL  132 (318)
T ss_dssp             -------CGGGGTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHH
T ss_pred             -------CHHHcCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHH
Confidence                   00012468999987777778899999999999998777654444443444443

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.74  E-value=1.8  Score=34.33  Aligned_cols=105  Identities=9%  Similarity=0.020  Sum_probs=62.1

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++...+.+   +   .++.+...|...... .........+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dv~~~~~-v~~~~~~~~~   78 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNESNIARIREEF---G---PRVHALRSDIADLNE-IAVLGAAAGQ   78 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH---G---GGEEEEECCTTCHHH-HHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh---C---CcceEEEccCCCHHH-HHHHHHHHHH
Confidence            4788898887765   2444555566 58999999998877665544   1   256677777654310 0011111100


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                                 ..+++|+++.|.....                      .-.+.+.+...++.+|.++.
T Consensus        79 -----------~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~  136 (255)
T 4eso_A           79 -----------TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVF  136 (255)
T ss_dssp             -----------HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             -----------HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEE
Confidence                       2347899998754321                      01245667777777888776

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=89.67  E-value=1.2  Score=39.43  Aligned_cols=112  Identities=18%  Similarity=0.168  Sum_probs=67.6

Q ss_pred             CCCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCC-------------ceeEEecCCcccc
Q 047371           58 GGELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK-------------KIKLHLVPDRTFT  122 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-------------~v~~~~~~~~~~~  122 (222)
                      ..++|.-+|+|. |. ++..+++.+ .+|+++|.++..++..++..  ..+...             ++.+.. +..   
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G-~~V~~~d~~~~~v~~l~~~~--~~i~e~gl~~~l~~~~~~~~l~~tt-d~~---   79 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIG-HDVFCLDVDQAKIDILNNGG--VPIHEPGLKEVIARNRSAGRLRFST-DIE---   79 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHTTC--CSSCCTTHHHHHHHHHHTTCEEEEC-CHH---
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHCCC--CCcCCCCHHHHHHHhcccCCEEEEC-CHH---
Confidence            457898898886 43 555666666 47999999999888776531  111000             111100 000   


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEecccc----------ccHHHHHHHHHHcccCCeEEEE-ecCCCCcHHH
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL----------NPLPQLADHIVSYAKPGAVVGI-SGILSEQLPR  191 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~----------~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~  191 (222)
                              .              .....|+|+...+-          ......++.+...++++..++. +++.....+.
T Consensus        80 --------~--------------a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~  137 (478)
T 2y0c_A           80 --------A--------------AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAER  137 (478)
T ss_dssp             --------H--------------HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHH
T ss_pred             --------H--------------HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHH
Confidence                    0              01247888886544          4567788889999999877655 3444555566


Q ss_pred             HHHHHHh
Q 047371          192 IINRYSE  198 (222)
Q Consensus       192 ~~~~~~~  198 (222)
                      +.+.+.+
T Consensus       138 l~~~l~~  144 (478)
T 2y0c_A          138 VRAAVAE  144 (478)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555544

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.58  E-value=3.9  Score=32.33  Aligned_cols=109  Identities=11%  Similarity=0.053  Sum_probs=63.4

Q ss_pred             CCCcEEEEccC--CC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTG--SG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G--~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .++++|-.|++  .|   .++..+++.+ .+|+.++.++...+.+.+.....+-  .++.+...|..... .+.......
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~-~v~~~~~~~   81 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGERLEKSVHELAGTLDR--NDSIILPCDVTNDA-EIETCFASI   81 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHTSSS--CCCEEEECCCSSSH-HHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCchHHHHHHHHHHHhcCC--CCceEEeCCCCCHH-HHHHHHHHH
Confidence            47789999877  44   2455566666 5799999887666666555444332  25677777765431 011111111


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc--------------------------HHHHHHHHHHcccCCeEEEE
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP--------------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      .+           ..+++|+++.|.....                          ...+++.+...++++|.++.
T Consensus        82 ~~-----------~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~  145 (266)
T 3oig_A           82 KE-----------QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVT  145 (266)
T ss_dssp             HH-----------HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred             HH-----------HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEE
Confidence            00           1246899888754321                          01245677778888888776

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=89.52  E-value=0.28  Score=41.63  Aligned_cols=99  Identities=13%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             hcCCCcEEEEcc-CC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ |. |..+..+++....+|++++ ++..++.+++    .+..   ..+...+ ..+       ...+ 
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~~~~~-~~~-------~~~~-  243 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK----LGAD---DVIDYKS-GSV-------EEQL-  243 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTS-SCH-------HHHH-
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH----cCCC---EEEECCc-hHH-------HHHH-
Confidence            567899999983 43 6666666665336899998 6666666543    3432   1121111 111       0001 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                              .   ....+|+++.+..-.  ...++...++++++|.++..+.
T Consensus       244 --------~---~~~g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          244 --------K---SLKPFDFILDNVGGS--TETWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             --------H---TSCCBSEEEESSCTT--HHHHGGGGBCSSSCCEEEESCC
T ss_pred             --------h---hcCCCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEeCC
Confidence                    0   124699999755432  1345677789999999988654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=89.40  E-value=2  Score=35.02  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=42.4

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|++++.++..++.+.+.+...+   .++.+...|....
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~   92 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNGLRGQG---FDAHGVVCDVRHL   92 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC---CceEEEEccCCCH
Confidence            5778998887765   2444555566 589999999998888877666544   2567777776543

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=89.33  E-value=0.49  Score=38.62  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=43.6

Q ss_pred             CCCeeEEEeccc----cccHH----------HHHHHHHHcccCCeEEEEe--cCCCCcHHHHHHHHHhhhhccee
Q 047371          147 TEEYDVVIANIL----LNPLP----------QLADHIVSYAKPGAVVGIS--GILSEQLPRIINRYSEFLEDILV  205 (222)
Q Consensus       147 ~~~~D~v~~~~~----~~~~~----------~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~~~~~~~~  205 (222)
                      .++||+|++|..    +||+.          .+-..+.++|+|||.+++.  +......+.+...+...|.....
T Consensus       209 ~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv  283 (324)
T 3trk_A          209 LGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRA  283 (324)
T ss_dssp             GCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEE
T ss_pred             CCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeee
Confidence            479999999865    24432          2457788999999999985  55566778888888887755544

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=89.19  E-value=0.23  Score=41.71  Aligned_cols=98  Identities=18%  Similarity=0.100  Sum_probs=54.6

Q ss_pred             cCC-CcEEEEccCCC---HHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccccc
Q 047371           57 KGG-ELFLDYGTGSG---ILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDG  131 (222)
Q Consensus        57 ~~~-~~vLD~G~G~G---~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (222)
                      +++ +++|-. .|+|   ..+..+++. + .+|++++.++..++.+++.    +..   ..+.. ....+.    +....
T Consensus       162 ~~g~~~vli~-gg~g~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~-~~~~~~----~~v~~  227 (349)
T 3pi7_A          162 QEGEKAFVMT-AGASQLCKLIIGLAKEEG-FRPIVTVRRDEQIALLKDI----GAA---HVLNE-KAPDFE----ATLRE  227 (349)
T ss_dssp             HHCCSEEEES-STTSHHHHHHHHHHHHHT-CEEEEEESCGGGHHHHHHH----TCS---EEEET-TSTTHH----HHHHH
T ss_pred             hCCCCEEEEe-CCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc----CCC---EEEEC-CcHHHH----HHHHH
Confidence            345 455543 3444   444445544 5 5999999999988888642    321   11211 111110    00000


Q ss_pred             chhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          132 VVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      .            .....+|+++.....    ..+..+.++|+++|.+++.+.
T Consensus       228 ~------------~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          228 V------------MKAEQPRIFLDAVTG----PLASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             H------------HHHHCCCEEEESSCH----HHHHHHHHHSCTTCEEEECCC
T ss_pred             H------------hcCCCCcEEEECCCC----hhHHHHHhhhcCCCEEEEEec
Confidence            0            012369999975543    234778889999999998643

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.97  E-value=3.6  Score=33.83  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=42.8

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|.   ++..+++.+ .+|++++.++..++.+.+.+...+.. .++.+...|....
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~~~   71 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSG-PEVMGVQLDVASR   71 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEECCTTCH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CeEEEEECCCCCH
Confidence            46789988887662   444555566 58999999999888877766554421 2566777776543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=88.92  E-value=5.5  Score=32.23  Aligned_cols=107  Identities=13%  Similarity=0.043  Sum_probs=62.1

Q ss_pred             CCCcEEEEccCCC-----HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGSG-----ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~G-----~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .++++|-.|++.|     .++..+++.+ .+|+.++.++...+.+++.....+    ++.+...|..... .+.......
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~-~v~~~~~~~  103 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDALKKRVEPLAEELG----AFVAGHCDVADAA-SIDAVFETL  103 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHHHHHHHHHHHHHHT----CEEEEECCTTCHH-HHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcC----CceEEECCCCCHH-HHHHHHHHH
Confidence            5788999998743     2444555666 579999998765555554443332    4566667765431 011111111


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc--------------------------HHHHHHHHHHcccCCeEEEE
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP--------------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      .+           ..++.|+++.|.....                          .-.+.+.+...++.+|.++.
T Consensus       104 ~~-----------~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~  167 (293)
T 3grk_A          104 EK-----------KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILT  167 (293)
T ss_dssp             HH-----------HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HH-----------hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence            00           2357899998765321                          01245677777777888776

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=88.92  E-value=3.1  Score=32.90  Aligned_cols=60  Identities=8%  Similarity=-0.025  Sum_probs=42.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+...+   .++.+...|....
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   68 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAEIEAAG---GRIVARSLDARNE   68 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTT---CEEEEEECCTTCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECcCCCH
Confidence            4778888887765   2444555566 589999999988888777666544   3677777777543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.65  E-value=4.4  Score=35.28  Aligned_cols=108  Identities=25%  Similarity=0.345  Sum_probs=65.5

Q ss_pred             CCCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-------------CCceeEEecCCcccc
Q 047371           58 GGELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-------------PKKIKLHLVPDRTFT  122 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~v~~~~~~~~~~~  122 (222)
                      .|.++--+|+|. |. ++..+++.| -+|+++|++++.++...+..  ..+.             ..++.+..       
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G-~~V~~~D~~~~kv~~L~~g~--~pi~epgl~~ll~~~~~~g~l~~tt-------   79 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHG-VDVLGVDINQQTIDKLQNGQ--ISIEEPGLQEVYEEVLSSGKLKVST-------   79 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHTTC--CSSCCTTHHHHHHHHHHTTCEEEES-------
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHCCC--CCcCCCCHHHHHHhhcccCceEEeC-------
Confidence            467777788886 43 445566666 48999999999888776521  1110             00111110       


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEeccccc------------cHHHHHHHHHHcccCCeEEEE-ecCCCCcH
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN------------PLPQLADHIVSYAKPGAVVGI-SGILSEQL  189 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~------------~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~  189 (222)
                                             .....|+++...|..            ......+.+...|++|..++. ++......
T Consensus        80 -----------------------d~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt  136 (431)
T 3ojo_A           80 -----------------------TPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTM  136 (431)
T ss_dssp             -----------------------SCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHH
T ss_pred             -----------------------chhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHH
Confidence                                   112478888743332            145567888999999987665 57777777


Q ss_pred             HHHHHHHHh
Q 047371          190 PRIINRYSE  198 (222)
Q Consensus       190 ~~~~~~~~~  198 (222)
                      +++.+.+.+
T Consensus       137 ~~v~~~i~e  145 (431)
T 3ojo_A          137 DDFVKPVIE  145 (431)
T ss_dssp             HHTHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777665433

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=88.37  E-value=4.1  Score=32.37  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=49.8

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.++..++...+.+...+.. ..+.....|....     +....+++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~D~~~~-----~~~~~~~~   81 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEG-ANVLINGRREENVNETIKEIRAQYPD-AILQPVVADLGTE-----QGCQDVIE   81 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHCTT-CEEEEEECCTTSH-----HHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCC-ceEEEEecCCCCH-----HHHHHHHH
Confidence            4677888886654   2344455555 68999999998887776666543321 2455666665432     11111211


Q ss_pred             ccccccccCCCCCCCeeEEEeccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                                 ..++.|+++.|..
T Consensus        82 -----------~~g~id~lv~nAg   94 (267)
T 3t4x_A           82 -----------KYPKVDILINNLG   94 (267)
T ss_dssp             -----------HCCCCSEEEECCC
T ss_pred             -----------hcCCCCEEEECCC
Confidence                       2356899998764

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=88.18  E-value=3.8  Score=35.15  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             CcEEEEccCCCHHHHHHHHh--------CCCEEEEEeCChHHHHHHHHHH
Q 047371           60 ELFLDYGTGSGILGIAAIKF--------GAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~--------~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      -.|+|+|+|.|.++.-+.+.        ...+++.+|+|+...+.=++++
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            36999999999987755431        2348999999997776444444

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.09  E-value=2.5  Score=33.80  Aligned_cols=108  Identities=10%  Similarity=0.004  Sum_probs=60.8

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEE-eCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGV-DIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+ ..++...+...+.+...+   .++.+...|..... ..........
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~-~v~~~~~~~~  100 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDG-FTVVINYAGKAAAAEEVAGKIEAAG---GKALTAQADVSDPA-AVRRLFATAE  100 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHT-CEEEEEESSCSHHHHHHHHHHHHTT---CCEEEEECCTTCHH-HHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHH-HHHHHHHHHH
Confidence            5788998887766   2455566666 466666 455666666555554443   25667777765431 0111111110


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-----------H-----------HHHHHHHHHcccCCeEEEE
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-----------L-----------PQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~-----------~~~l~~~~~~LkpgG~l~~  181 (222)
                      +           ..++.|+++.|.....           .           -.+++.+...++.+|.++.
T Consensus       101 ~-----------~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~  159 (267)
T 3u5t_A          101 E-----------AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIIN  159 (267)
T ss_dssp             H-----------HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             H-----------HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEE
Confidence            0           2347899998765321           0           1235677777777888776

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.04  E-value=4.2  Score=32.92  Aligned_cols=108  Identities=19%  Similarity=0.130  Sum_probs=60.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHH-HHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQV-IKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.+... .+...+.....+   .++.+...|..... ..........
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~-~v~~~~~~~~  120 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKEG---VKCVLLPGDLSDEQ-HCKDIVQETV  120 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTT---CCEEEEESCTTSHH-HHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcC---CcEEEEECCCCCHH-HHHHHHHHHH
Confidence            4778888887665   2444455565 689999988653 344444443333   35667777765431 0111111110


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc-----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP-----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      +           ..+++|+++.|.....                       .-.+.+.+...++.+|.++.
T Consensus       121 ~-----------~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~  180 (291)
T 3ijr_A          121 R-----------QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN  180 (291)
T ss_dssp             H-----------HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             H-----------HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence            0           2346899998743210                       11246777778888888776

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=87.92  E-value=5.9  Score=28.50  Aligned_cols=97  Identities=11%  Similarity=0.027  Sum_probs=54.9

Q ss_pred             CCcEEEEccCCCHHHHHHH----HhCCCEEEEEeCC-hHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           59 GELFLDYGTGSGILGIAAI----KFGAAMFVGVDID-PQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la----~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..+++-+|+  |.++..++    +.+ .+|+++|.+ +...+...... .     ..+.+..+|.....     .+... 
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~-~-----~~~~~i~gd~~~~~-----~l~~a-   67 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL-G-----DNADVIPGDSNDSS-----VLKKA-   67 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH-C-----TTCEEEESCTTSHH-----HHHHH-
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhh-c-----CCCeEEEcCCCCHH-----HHHHc-
Confidence            456777775  55555444    334 579999997 45444443321 1     13456677664331     11111 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                  ....+|++++...-+.....+....+.+.|...++..
T Consensus        68 ------------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           68 ------------GIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             ------------TTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             ------------ChhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEE
Confidence                        2456899998655544445566666777777777664

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=87.89  E-value=2  Score=36.29  Aligned_cols=98  Identities=7%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             cCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++|++||-.|++  .|..+..+++....+++++. ++..++.+++    .|..   ..+...+ ..+.    +.+...  
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~vi~~~~-~~~~----~~v~~~--  227 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGAE---EVFDYRA-PNLA----QTIRTY--  227 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTS-TTHH----HHHHHH--
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCCc---EEEECCC-chHH----HHHHHH--
Confidence            678999999984  46777777775445888885 7877776654    3432   1121111 1110    111111  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcc-cCCeEEEEec
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYA-KPGAVVGISG  183 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~  183 (222)
                                 ..+.+|+++-...-   ...++.+.+.| +++|.++..+
T Consensus       228 -----------t~g~~d~v~d~~g~---~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          228 -----------TKNNLRYALDCITN---VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             -----------TTTCCCEEEESSCS---HHHHHHHHHHSCTTCEEEEESS
T ss_pred             -----------ccCCccEEEECCCc---hHHHHHHHHHhhcCCCEEEEEe
Confidence                       23359999965432   35677777888 6999988754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.74  E-value=4.4  Score=35.36  Aligned_cols=111  Identities=14%  Similarity=0.078  Sum_probs=65.8

Q ss_pred             CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-------------CCceeEEecCCcccccc
Q 047371           60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-------------PKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~  124 (222)
                      ++|.-+|+|. | .++..+++.+ .+|+++|.++..++..++..  ....             ..++.+. .+...    
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G-~~V~~~D~~~~~v~~l~~g~--~~i~e~gl~~~l~~~~~~~~l~~t-~d~~e----   74 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELG-ANVRCIDTDRNKIEQLNSGT--IPIYEPGLEKMIARNVKAGRLRFG-TEIEQ----   74 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTC--SCCCSTTHHHHHHHHHHTTSEEEE-SCHHH----
T ss_pred             CEEEEECcCHHHHHHHHHHHhcC-CEEEEEECCHHHHHHHHcCC--CcccCCCHHHHHHhhcccCcEEEE-CCHHH----
Confidence            3577777765 3 2344455555 48999999999887766521  1100             0011111 00000    


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEeccccc----------cHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHH
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN----------PLPQLADHIVSYAKPGAVVGI-SGILSEQLPRII  193 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~  193 (222)
                                           .....|+|+...+..          .....++.+...+++|..++. +++.....+++.
T Consensus        75 ---------------------a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~  133 (450)
T 3gg2_A           75 ---------------------AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIR  133 (450)
T ss_dssp             ---------------------HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHH
T ss_pred             ---------------------HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHH
Confidence                                 023478888765443          567788899999999877665 455666667776


Q ss_pred             HHHHhh
Q 047371          194 NRYSEF  199 (222)
Q Consensus       194 ~~~~~~  199 (222)
                      +.+.+.
T Consensus       134 ~~l~~~  139 (450)
T 3gg2_A          134 KAIQEE  139 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666553

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=87.45  E-value=5.5  Score=31.56  Aligned_cols=61  Identities=11%  Similarity=-0.014  Sum_probs=41.1

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-cCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-NNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+.. .+-  .++.+...|....
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~Dv~~~   71 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESALRQRFPG--ARLFASVCDVLDA   71 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSTT--CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCC--ceEEEEeCCCCCH
Confidence            4778888887765   2444555566 5799999999888877766654 221  2466777776543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=87.39  E-value=3.7  Score=32.86  Aligned_cols=60  Identities=10%  Similarity=-0.050  Sum_probs=40.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+...+   .++.+...|....
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~   65 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAG---GTALAQVLDVTDR   65 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTT---CEEEEEECCTTCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEcCCCCH
Confidence            3667888887665   2444455565 689999999988888777665544   2566666776543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=87.36  E-value=3.7  Score=33.30  Aligned_cols=108  Identities=15%  Similarity=-0.008  Sum_probs=60.1

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCC--hHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDID--PQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.+  ....+...+.....+   .++.+...|...... +.......
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~-v~~~~~~~  122 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEEEDAQQVKALIEECG---RKAVLLPGDLSDESF-ARSLVHKA  122 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGHHHHHHHHHHHHHTT---CCEEECCCCTTSHHH-HHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchhHHHHHHHHHHHcC---CcEEEEEecCCCHHH-HHHHHHHH
Confidence            4778888887655   2344455555 578888886  334444444444433   256666666644310 01111111


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc-----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP-----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      .+           ..+++|+++.|.....                       .-.+.+.+...++.+|.++.
T Consensus       123 ~~-----------~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~  183 (294)
T 3r3s_A          123 RE-----------ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT  183 (294)
T ss_dssp             HH-----------HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             HH-----------HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence            00           1346899998754311                       11246777788888888776

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=87.34  E-value=4.8  Score=32.64  Aligned_cols=107  Identities=13%  Similarity=0.035  Sum_probs=61.7

Q ss_pred             CCCcEEEEccCC--C---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGS--G---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~--G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .++++|-.|+++  |   .++..+++.+ .+|+.++.++...+.+.+.....+    .+.+...|..... .+.......
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~-~v~~~~~~~  102 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSETFKKRVDPLAESLG----VKLTVPCDVSDAE-SVDNMFKVL  102 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHHT----CCEEEECCTTCHH-HHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcC----CeEEEEcCCCCHH-HHHHHHHHH
Confidence            478899998864  3   2444555666 579999999866555555444333    3456666664431 011111111


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc--------------------------HHHHHHHHHHcccCCeEEEE
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP--------------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      .+           ..+++|+++.|..+..                          ...+.+.+...++.+|.++.
T Consensus       103 ~~-----------~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~  166 (296)
T 3k31_A          103 AE-----------EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILT  166 (296)
T ss_dssp             HH-----------HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred             HH-----------HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence            00           1256899998765321                          11245677777778888776

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=87.25  E-value=1.9  Score=34.38  Aligned_cols=107  Identities=10%  Similarity=-0.018  Sum_probs=58.0

Q ss_pred             CCCcEEEEccCCCHHHHH----HHHhCCCEEEEEeCCh---HHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIA----AIKFGAAMFVGVDIDP---QVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~----la~~~~~~v~gvD~s~---~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      .++++|-.|++.| ++..    +++.+ .+|+.++.+.   ..++...+.+...+   .++.+...|..... .+.....
T Consensus        10 ~~k~vlVTGas~G-IG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~-~v~~~~~   83 (262)
T 3ksu_A           10 KNKVIVIAGGIKN-LGALTAKTFALES-VNLVLHYHQAKDSDTANKLKDELEDQG---AKVALYQSDLSNEE-EVAKLFD   83 (262)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHTTSS-CEEEEEESCGGGHHHHHHHHHHHHTTT---CEEEEEECCCCSHH-HHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCC-CEEEEEecCccCHHHHHHHHHHHHhcC---CcEEEEECCCCCHH-HHHHHHH
Confidence            4678888887655 4443    44445 5788887654   34444444444333   36777777765431 0111111


Q ss_pred             cchhccccccccCCCCCCCeeEEEecccccc-----------H-----------HHHHHHHHHcccCCeEEEE
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNP-----------L-----------PQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~-----------~~~l~~~~~~LkpgG~l~~  181 (222)
                      ...+           ..++.|+++.|.....           .           -.+.+.+...++++|.++.
T Consensus        84 ~~~~-----------~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~  145 (262)
T 3ksu_A           84 FAEK-----------EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIIT  145 (262)
T ss_dssp             HHHH-----------HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHH-----------HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEE
Confidence            1100           2357899998765321           0           1135666667777788776

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=86.86  E-value=1.6  Score=35.15  Aligned_cols=88  Identities=16%  Similarity=0.073  Sum_probs=52.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++|-.|++.|   .++..+++.+ .+|++++.++...+.+.+.+...+-  .++.+...|..............+.+
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEKLKNSNH--ENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTC--CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEccCCCcHHHHHHHHHHHHH
Confidence            4678888887655   2344455555 5899999999888877776654432  36777777765431011111111100


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ..+++|+++.|...
T Consensus        88 -----------~~g~iD~lv~nAg~  101 (311)
T 3o26_A           88 -----------HFGKLDILVNNAGV  101 (311)
T ss_dssp             -----------HHSSCCEEEECCCC
T ss_pred             -----------hCCCCCEEEECCcc
Confidence                       13478999998764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=86.84  E-value=4.1  Score=32.46  Aligned_cols=108  Identities=15%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeC-ChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDI-DPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++++|-.|++.|.   ++..+++.+ .+|+.++. +...++...+.+...+   .++.+...|..... .+........
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~-~v~~~~~~~~   91 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLG-AKVVVNYANSTKDAEKVVSEIKALG---SDAIAIKADIRQVP-EIVKLFDQAV   91 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTSHH-HHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHH-HHHHHHHHHH
Confidence            46788888876652   444555566 57887776 4555665555555443   35667777765431 0111111110


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      +           ..++.|+++.|.....                      .-.+.+.+...++.+|.++.
T Consensus        92 ~-----------~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~  150 (270)
T 3is3_A           92 A-----------HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVL  150 (270)
T ss_dssp             H-----------HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             H-----------HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEE
Confidence            0           1246899998754321                      11245777778888888776

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=86.57  E-value=5.6  Score=31.78  Aligned_cols=108  Identities=10%  Similarity=0.045  Sum_probs=60.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCC-hHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDID-PQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.. ....+...+.+...+   .++.+...|...... +........
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~-v~~~~~~~~  104 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAAERAQAVVSEIEQAG---GRAVAIRADNRDAEA-IEQAIRETV  104 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHH-HHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHH-HHHHHHHHH
Confidence            5788998887765   2444555666 578887654 455555555554433   256677777654310 111111110


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      +           ..++.|+++.|.....                      .-.+.+.+...++.+|.++.
T Consensus       105 ~-----------~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~  163 (271)
T 3v2g_A          105 E-----------ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIIT  163 (271)
T ss_dssp             H-----------HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             H-----------HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEE
Confidence            0           2346899998764311                      11245777777887888776

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=86.21  E-value=5.4  Score=34.76  Aligned_cols=44  Identities=16%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             CCcEEEEccCCCHHHHHHHH----hC--CCEEEEEeCChHHHHHHHHHHH
Q 047371           59 GELFLDYGTGSGILGIAAIK----FG--AAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~----~~--~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      .-.|+|+|+|+|.++.-+.+    .+  ..+++.+|+|+...+.=++++.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            46899999999987775543    22  3589999999987766666654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=86.04  E-value=4.5  Score=32.36  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=39.8

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeC-------------ChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDI-------------DPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~-------------s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+++|.             ++..++.+.+.+...+   .++.+...|....
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEG-ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG---RKALTRVLDVRDD   89 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcC---CeEEEEEcCCCCH
Confidence            5788888887765   2444555666 68999998             6777777666655444   3566777776543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.75  E-value=3.2  Score=33.32  Aligned_cols=60  Identities=13%  Similarity=0.065  Sum_probs=40.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+...+   .++.+...|....
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   94 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKPGSTAAVQQRIIASG---GTAQELAGDLSEA   94 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSTTTTHHHHHHHHHTT---CCEEEEECCTTST
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEecCCCH
Confidence            5788888887655   2444455566 589999999888777766665544   3566777776543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=85.69  E-value=8.5  Score=29.92  Aligned_cols=79  Identities=15%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++++|-.|++.|   .++..+++.+ .+|+.++.++..++...+.+.      .++.+...|.....     ....+++
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~D~~~~~-----~~~~~~~   80 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKLKSLGNALK------DNYTIEVCNLANKE-----ECSNLIS   80 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHC------SSEEEEECCTTSHH-----HHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHhc------cCccEEEcCCCCHH-----HHHHHHH
Confidence            5778888877655   2344455555 689999999988776655432      25666666664431     1111111


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ..++.|+++.|...
T Consensus        81 -----------~~~~id~li~~Ag~   94 (249)
T 3f9i_A           81 -----------KTSNLDILVCNAGI   94 (249)
T ss_dssp             -----------TCSCCSEEEECCC-
T ss_pred             -----------hcCCCCEEEECCCC
Confidence                       23568999987653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=85.68  E-value=6.7  Score=30.79  Aligned_cols=58  Identities=9%  Similarity=0.192  Sum_probs=38.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+...+-  .++.+...|.
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~   71 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYG-ATVILLGRNEEKLRQVASHINEETG--RQPQWFILDL   71 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHS--CCCEEEECCT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcC--CCceEEEEec
Confidence            4778888887665   2444455566 5899999999888877666554332  1455666665

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=85.67  E-value=4.6  Score=32.21  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=38.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCC------------hHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDID------------PQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.+            +..++...+.+...+   .++.+...|....
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~   86 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG---SRIVARQADVRDR   86 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT---CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcC---CeEEEEeCCCCCH
Confidence            4778888887665   2444555565 689999987            666666655554443   3677777777543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=85.64  E-value=4.4  Score=32.43  Aligned_cols=59  Identities=10%  Similarity=0.139  Sum_probs=39.3

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      .++++|-.|++.|   .++..+++.+ .+|++++.++..++.....+...+.   ++.+...|...
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~Dv~d   88 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEGIGAAFKQAGL---EGRGAVLNVND   88 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHTC---CCEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCC---cEEEEEEeCCC
Confidence            4677887776655   2344455565 5899999999888877766655443   45566666644

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=85.54  E-value=7  Score=31.66  Aligned_cols=60  Identities=20%  Similarity=0.304  Sum_probs=39.5

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCC------------hHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDID------------PQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|.   ++..+++.+ .+|+.+|.+            +..++.+...+...+   .++.+...|....
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~  101 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG---RRIIASQVDVRDF  101 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcC---CceEEEECCCCCH
Confidence            47788888877662   444555565 689999987            666666655554443   3567777776543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=85.44  E-value=4.3  Score=32.12  Aligned_cols=108  Identities=10%  Similarity=-0.019  Sum_probs=61.6

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEE-eCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGV-DIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+ +.++...+.+.+.+...+   .++.+...|..... .+........
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~-~v~~~~~~~~   81 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYNGAAEGAATAVAEIEKLG---RSALAIKADLTNAA-EVEAAISAAA   81 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSSCHHHHHHHHHHHTTT---SCCEEEECCTTCHH-HHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHH-HHHHHHHHHH
Confidence            4788888887765   2444555666 567776 777777766666555443   25667777765431 0111111110


Q ss_pred             hccccccccCCCCCCCeeEEEeccccc-c----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLN-P----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~-~----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      +           ..++.|+++.|.... .                      .-.+.+.+...++++|.++.
T Consensus        82 ~-----------~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~  141 (259)
T 3edm_A           82 D-----------KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVT  141 (259)
T ss_dssp             H-----------HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             H-----------HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            0           124689999876422 0                      11245667777777777766

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=85.42  E-value=4.9  Score=31.52  Aligned_cols=59  Identities=19%  Similarity=0.134  Sum_probs=37.7

Q ss_pred             CCCcEEEEccCCCHHHHH----HHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGILGIA----AIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~----la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +++++|-.|+ +|.++..    +++ .+ .+|++++.++..++...+.+...+   .++.+...|....
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~   66 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDL   66 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcC-CeEEEEeCChHHHHHHHHHHHhcC---CeeEEEECCCCCH
Confidence            4667787764 4555444    444 44 689999999887776666555433   2566777776543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=85.34  E-value=2.3  Score=34.18  Aligned_cols=60  Identities=12%  Similarity=0.066  Sum_probs=40.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|++++.++..++.+.+.+...+   .++.+...|....
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~   85 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAG---HDVDGSSCDVTST   85 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEECCCCCH
Confidence            4778898887665   2444555565 679999999988887777665444   3577777776543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=85.31  E-value=6.6  Score=31.50  Aligned_cols=57  Identities=18%  Similarity=0.164  Sum_probs=38.7

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.++..++.+.+.+   +   .++.+...|....
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dv~d~   87 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAADAAATKI---G---CGAAACRVDVSDE   87 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHH---C---SSCEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHc---C---CcceEEEecCCCH
Confidence            4778888887776   2455566666 58999999988777665543   2   2556666776543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.30  E-value=4  Score=32.39  Aligned_cols=60  Identities=10%  Similarity=0.034  Sum_probs=43.2

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|.   ++..+++.+ .+|+.++.++..++.+.+.+...+   .++.+...|....
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   72 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVERLEDVAKQVTDTG---RRALSVGTDITDD   72 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCH
Confidence            47889999887762   455566666 589999999988888777665544   3567777776543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=85.03  E-value=5.4  Score=31.81  Aligned_cols=60  Identities=23%  Similarity=0.356  Sum_probs=39.2

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeC-------------ChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDI-------------DPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~-------------s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.             +...++...+.+...+   .++.+...|....
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~   85 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEG-ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN---RRIVAAVVDTRDF   85 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcC---CeEEEEECCCCCH
Confidence            4778888887765   2444555666 58999998             5666666655554433   3566777776543

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=85.00  E-value=1.3  Score=36.95  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=53.5

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|++.  |..+..+++. +...|++++ ++...+.++     .+..  . .+.  ....+.    +.....
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~--~-~~~--~~~~~~----~~~~~~  204 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT--H-LFD--RNADYV----QEVKRI  204 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS--E-EEE--TTSCHH----HHHHHH
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc--E-EEc--CCccHH----HHHHHh
Confidence            56899999999842  5666666664 457899988 555444443     2322  1 121  111110    111111


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                   ..+.+|+++....-    ..++.+.++|+++|.+++.+.
T Consensus       205 -------------~~~g~Dvv~d~~g~----~~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          205 -------------SAEGVDIVLDCLCG----DNTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             -------------CTTCEEEEEEECC-----------CTTEEEEEEEEEEC-
T ss_pred             -------------cCCCceEEEECCCc----hhHHHHHHHhhcCCEEEEECC
Confidence                         23579999965432    224678899999999998654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=84.95  E-value=3.4  Score=33.22  Aligned_cols=60  Identities=15%  Similarity=0.046  Sum_probs=41.0

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++...+.+...+   .++.+...|....
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~   93 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAG-AQVAVAARHSDALQVVADEIAGVG---GKALPIRCDVTQP   93 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTT---CCCEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCH
Confidence            5788888887765   2444555565 589999999988877776665544   2566677776543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=84.90  E-value=6.4  Score=32.23  Aligned_cols=60  Identities=18%  Similarity=0.268  Sum_probs=38.1

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCC------------hHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDID------------PQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+++|.+            +..++...+.+...+   .++.+...|....
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~  119 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG---RRIIARQADVRDL  119 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcC---CeEEEEECCCCCH
Confidence            4778888887665   2444555565 689999886            566665555554443   3566777776543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.80  E-value=7.5  Score=31.28  Aligned_cols=101  Identities=19%  Similarity=0.151  Sum_probs=57.1

Q ss_pred             CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc-ccccchhcc
Q 047371           60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE-RVDGVVEYL  136 (222)
Q Consensus        60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~  136 (222)
                      ++|.-+|+|. | .++..+++.+ .+|+.+|.++..++..++.    ++.     ..... ......... .....    
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~----g~~-----~~~~~-~~~~~~~~~~~~~~~----   68 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGG-NDVTLIDQWPAHIEAIRKN----GLI-----ADFNG-EEVVANLPIFSPEEI----   68 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHH----CEE-----EEETT-EEEEECCCEECGGGC----
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhC----CEE-----EEeCC-CeeEecceeecchhh----
Confidence            4688888875 3 2444555555 4899999999877766543    211     11000 000000000 00000    


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             ......+|+|+...+-.....+++.+...++++..++..
T Consensus        69 -------~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           69 -------DHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             -------CTTSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             -------cccCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEe
Confidence                   001126899998776666778889999999988776654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=84.73  E-value=5.5  Score=31.90  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=39.3

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCC----------------hHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDID----------------PQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s----------------~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.+                +..++.....+...+   .++.+...|.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv   85 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN---RRIVTAEVDV   85 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT---CCEEEEECCT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC---CceEEEEcCC
Confidence            4788898888776   2444555666 689999987                566666555544433   3577777776


Q ss_pred             ccc
Q 047371          119 RTF  121 (222)
Q Consensus       119 ~~~  121 (222)
                      ...
T Consensus        86 ~~~   88 (286)
T 3uve_A           86 RDY   88 (286)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=84.54  E-value=3.8  Score=32.61  Aligned_cols=60  Identities=17%  Similarity=0.061  Sum_probs=40.3

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-cCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-NNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+.. .+   .++.+...|....
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~Dv~~~   82 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRALGEQFG---TDVHTVAIDLAEP   82 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHC---CCEEEEECCTTST
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcC---CcEEEEEecCCCH
Confidence            4778888877665   2444555565 5899999999888877666543 23   2567777776543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=84.42  E-value=5.5  Score=32.15  Aligned_cols=109  Identities=12%  Similarity=0.110  Sum_probs=64.5

Q ss_pred             CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc---------CCCCC-------ceeEEecCCccc
Q 047371           60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN---------NIGPK-------KIKLHLVPDRTF  121 (222)
Q Consensus        60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~-------~v~~~~~~~~~~  121 (222)
                      ++|.-+|+|+ | .++..++..+ .+|+..|.+++.++.+.+.+...         ++...       ++... .+... 
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~-   81 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHG-FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS-DDLAQ-   81 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-SCHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-CCHHH-
Confidence            4677788876 3 3455556666 48999999999998887654211         11100       01110 00000 


Q ss_pred             ccccccccccchhccccccccCCCCCCCeeEEEeccccc--cHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                                              .....|+|+...+-.  ....+++++...++|+..++..+. .-...++.+.+
T Consensus        82 ------------------------~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS-~~~~~~la~~~  133 (283)
T 4e12_A           82 ------------------------AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSS-TLLPSDLVGYT  133 (283)
T ss_dssp             ------------------------HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS-SSCHHHHHHHH
T ss_pred             ------------------------HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCC-CCCHHHHHhhc
Confidence                                    124589999877665  456678889999999887664322 22344555544

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=84.10  E-value=5.8  Score=31.65  Aligned_cols=86  Identities=13%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             cEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           61 LFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        61 ~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      +|.-+|+|. |. ++..+.+.+ .+|+++|.++..++.+.+    .+.. .  .. ..+..                   
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~----~g~~-~--~~-~~~~~-------------------   53 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVE----RQLV-D--EA-GQDLS-------------------   53 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHH----TTSC-S--EE-ESCGG-------------------
T ss_pred             EEEEEcCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHh----CCCC-c--cc-cCCHH-------------------
Confidence            466778775 32 344455555 489999999987766542    2321 0  01 11110                   


Q ss_pred             ccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          139 HEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                          .  . ...|+|+...+-.....+++.+...++++..++.
T Consensus        54 ----~--~-~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           54 ----L--L-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             ----G--G-TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ----H--h-CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEEE
Confidence                0  2 4589999877766677788888888988876543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=83.98  E-value=6  Score=31.81  Aligned_cols=61  Identities=18%  Similarity=0.120  Sum_probs=38.1

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+...+-  ..+.+...|....
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~   95 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDVLDAAAGEIGGRTG--NIVRAVVCDVGDP   95 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC--CeEEEEEcCCCCH
Confidence            4778888876654   2344455555 5899999999888777666544332  1346677776543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=83.78  E-value=4  Score=32.18  Aligned_cols=63  Identities=13%  Similarity=0.067  Sum_probs=41.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+....-...++.+...|....
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   71 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDC   71 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCH
Confidence            4678888887765   2445566666 5899999999888887766654321112566777776543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=83.72  E-value=6.2  Score=27.51  Aligned_cols=36  Identities=22%  Similarity=0.440  Sum_probs=23.2

Q ss_pred             CCCcEEEEccCCCHHHHHHH----HhCCCEEEEEeCChHHHHH
Q 047371           58 GGELFLDYGTGSGILGIAAI----KFGAAMFVGVDIDPQVIKS   96 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la----~~~~~~v~gvD~s~~~l~~   96 (222)
                      ++++|+-+|+  |.++..++    +.+ .+++++|.++..++.
T Consensus         5 ~~~~v~I~G~--G~iG~~~a~~l~~~g-~~v~~~d~~~~~~~~   44 (144)
T 2hmt_A            5 KNKQFAVIGL--GRFGGSIVKELHRMG-HEVLAVDINEEKVNA   44 (144)
T ss_dssp             -CCSEEEECC--SHHHHHHHHHHHHTT-CCCEEEESCHHHHHT
T ss_pred             cCCcEEEECC--CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH
Confidence            3567998887  54444433    344 579999998865543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=83.69  E-value=3.1  Score=34.12  Aligned_cols=112  Identities=12%  Similarity=0.028  Sum_probs=62.3

Q ss_pred             CcEEEEccCCC--HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           60 ELFLDYGTGSG--ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        60 ~~vLD~G~G~G--~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++|.-+|+|.=  .++..|++.+ .+|+.++.++  .+..    ...++.     ...... .+...........     
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g-~~V~~~~r~~--~~~i----~~~g~~-----~~~~~g-~~~~~~~~~~~~~-----   64 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSG-EDVHFLLRRD--YEAI----AGNGLK-----VFSING-DFTLPHVKGYRAP-----   64 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTS-CCEEEECSTT--HHHH----HHTCEE-----EEETTC-CEEESCCCEESCH-----
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CeEEEEEcCc--HHHH----HhCCCE-----EEcCCC-eEEEeeceeecCH-----
Confidence            46888999973  3555666665 4799999876  2332    223321     111100 0000000000000     


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                             .....+|+|+..-+.....+.++.+...++++..++.....-...+.+.+.+
T Consensus        65 -------~~~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~  116 (312)
T 3hn2_A           65 -------EEIGPMDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLF  116 (312)
T ss_dssp             -------HHHCCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHT
T ss_pred             -------HHcCCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHC
Confidence                   0123689999887777788899999999999987776544444444454444

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=83.66  E-value=11  Score=30.07  Aligned_cols=89  Identities=19%  Similarity=0.164  Sum_probs=54.9

Q ss_pred             cEEEEccCC-CH-HHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           61 LFLDYGTGS-GI-LGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        61 ~vLD~G~G~-G~-~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +|.-+|+|. |. ++..+++.+. .+|+++|.++..++.+++    .+..  . .. ..+...                 
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~--~-~~-~~~~~~-----------------   57 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGII--D-EG-TTSIAK-----------------   57 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSC--S-EE-ESCGGG-----------------
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCc--c-cc-cCCHHH-----------------
Confidence            577788775 32 3444555552 379999999988776543    2321  0 01 111100                 


Q ss_pred             cccccCCCCCC-CeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETE-EYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~-~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              ... ..|+|+...+......++..+...++++..++..
T Consensus        58 --------~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~~   95 (281)
T 2g5c_A           58 --------VEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQ   95 (281)
T ss_dssp             --------GGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             --------HhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence                    122 5799998777666777888888889998866653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.58  E-value=7.7  Score=30.45  Aligned_cols=59  Identities=14%  Similarity=-0.049  Sum_probs=36.6

Q ss_pred             CCCcEEEEccC-CCHH----HHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTG-SGIL----GIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G-~G~~----~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +++++|-.|++ +|.+    +..+++.+ .+|+.++.+....+.+++.....+    ++.+...|....
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~   76 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFKDRITEFAAEFG----SELVFPCDVADD   76 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHTT----CCCEEECCTTCH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchhhHHHHHHHHHHcC----CcEEEECCCCCH
Confidence            57889999975 2433    44455555 589999988665555554443332    355666766543

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=83.54  E-value=1.2  Score=41.76  Aligned_cols=43  Identities=19%  Similarity=0.111  Sum_probs=33.7

Q ss_pred             CCcEEEEccCCCHHHHHHHHhC------CCEEEEEeCChHHHHHHHHHH
Q 047371           59 GELFLDYGTGSGILGIAAIKFG------AAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~------~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      ..+|+|+.||.|.++.=+.+.+      ..-+.++|+++.+++..+.|.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            3589999999998776554432      457899999999988887764

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=83.51  E-value=1.2  Score=38.47  Aligned_cols=43  Identities=14%  Similarity=-0.147  Sum_probs=34.8

Q ss_pred             CcEEEEccCCCHHHHHHHHhC--CCE----EEEEeCChHHHHHHHHHHH
Q 047371           60 ELFLDYGTGSGILGIAAIKFG--AAM----FVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~--~~~----v~gvD~s~~~l~~a~~~~~  102 (222)
                      .+|+|++||.|....-+.+.+  ..-    +.++|+++.+++..+.+..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            489999999999888776654  334    8999999999888877764

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=83.12  E-value=3  Score=34.84  Aligned_cols=106  Identities=11%  Similarity=0.053  Sum_probs=54.8

Q ss_pred             hcCC-CcEEEEcc-CC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC--Ccccccccccccc
Q 047371           56 IKGG-ELFLDYGT-GS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP--DRTFTASMNERVD  130 (222)
Q Consensus        56 ~~~~-~~vLD~G~-G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~  130 (222)
                      +++| ++||-.|+ |. |..+..+++....+++++.-++..++..++.++..|..  .+ +...+  ...+       ..
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~--~v-i~~~~~~~~~~-------~~  233 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT--QV-ITEDQNNSREF-------GP  233 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS--EE-EEHHHHHCGGG-------HH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe--EE-EecCccchHHH-------HH
Confidence            5678 99999987 33 66777777652357777765544321111122233432  11 11110  0011       00


Q ss_pred             cchhccccccccCCC--CCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          131 GVVEYLSSHEIRGIS--ETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~--~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      .+         ..+.  ..+.+|+++-...-   .... .+.++|+++|.+++.+.
T Consensus       234 ~i---------~~~t~~~~~g~Dvvid~~G~---~~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          234 TI---------KEWIKQSGGEAKLALNCVGG---KSST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             HH---------HHHHHHHTCCEEEEEESSCH---HHHH-HHHHTSCTTCEEEECCC
T ss_pred             HH---------HHHhhccCCCceEEEECCCc---hhHH-HHHHHhccCCEEEEecC
Confidence            00         0000  12469999975432   2233 66799999999988543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.07  E-value=1.7  Score=38.58  Aligned_cols=91  Identities=23%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ..+|++|+-+|+|. |......++ .+ .+|+++|.++..++.|++    .+.     ..  .+...             
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~G-a~Viv~d~~~~~~~~A~~----~Ga-----~~--~~l~e-------------  325 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQG-ARVSVTEIDPINALQAMM----EGF-----DV--VTVEE-------------  325 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHH----TTC-----EE--CCHHH-------------
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----cCC-----EE--ecHHH-------------
Confidence            45789999999865 433333333 45 589999999987766653    232     11  11110             


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHH-HHHHHcccCCeEEEEecCCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLA-DHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~  186 (222)
                                  ....+|+|+.......   ++ ....+.+|+||+++..+...
T Consensus       326 ------------~l~~aDvVi~atgt~~---~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          326 ------------AIGDADIVVTATGNKD---IIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             ------------HGGGCSEEEECSSSSC---SBCHHHHHHSCTTCEEEECSSSG
T ss_pred             ------------HHhCCCEEEECCCCHH---HHHHHHHHhcCCCcEEEEeCCCC
Confidence                        0134799997644332   22 25566789999998865543

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=82.93  E-value=2.5  Score=38.09  Aligned_cols=60  Identities=15%  Similarity=0.283  Sum_probs=43.4

Q ss_pred             CCCCeeEEEeccc----cccHH----------HHHHHHHHcccCCeEEEEe--cCCCCcHHHHHHHHHhhhhccee
Q 047371          146 ETEEYDVVIANIL----LNPLP----------QLADHIVSYAKPGAVVGIS--GILSEQLPRIINRYSEFLEDILV  205 (222)
Q Consensus       146 ~~~~~D~v~~~~~----~~~~~----------~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~~~~~~~~  205 (222)
                      ..++||+|++|..    +||+.          .+-..+.++|+|||.+++.  +......+.+...+...|.....
T Consensus       218 ~~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~rv  293 (670)
T 4gua_A          218 PQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSA  293 (670)
T ss_dssp             CCCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEEE
T ss_pred             CCCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeeee
Confidence            4679999999864    34432          3567888999999999885  44566667888888777655543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=82.82  E-value=0.98  Score=38.33  Aligned_cols=95  Identities=16%  Similarity=0.224  Sum_probs=52.8

Q ss_pred             CCCcEEEEccCCCHHHHHHH----HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSGILGIAAI----KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++|+-+|+|  .++..++    ..+ .+|+++|.++..++.+++..   +.   .+.....+...+        ... 
T Consensus       165 ~~~~V~ViGaG--~iG~~~a~~l~~~G-a~V~~~d~~~~~~~~~~~~~---g~---~~~~~~~~~~~l--------~~~-  226 (369)
T 2eez_A          165 APASVVILGGG--TVGTNAAKIALGMG-AQVTILDVNHKRLQYLDDVF---GG---RVITLTATEANI--------KKS-  226 (369)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHT---TT---SEEEEECCHHHH--------HHH-
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHhc---Cc---eEEEecCCHHHH--------HHH-
Confidence            36789999985  4444333    345 48999999998877665432   21   221211111111        000 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccH-H-H-HHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPL-P-Q-LADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-~-~-~l~~~~~~LkpgG~l~~~~  183 (222)
                                   ...+|+++.+.+.... . . +.+.+.+.+|+||.++...
T Consensus       227 -------------~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          227 -------------VQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             -------------HHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             -------------HhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence                         1257999887654321 1 1 2466777889999887643

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=82.67  E-value=9.6  Score=29.95  Aligned_cols=57  Identities=19%  Similarity=0.131  Sum_probs=36.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.++..++.....+   +   .++.+...|....
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~D~~~~   66 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREG-ATVAIADIDIERARQAAAEI---G---PAAYAVQMDVTRQ   66 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH---C---TTEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh---C---CCceEEEeeCCCH
Confidence            4778888886654   2344455555 58999999988776665543   1   2456666766543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=82.51  E-value=6  Score=30.79  Aligned_cols=86  Identities=15%  Similarity=0.143  Sum_probs=51.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++++|-.|++.|   .++..+++.+ .+|++++.++..++.....+...+   .++.+...|..... .+........ 
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~-~~~~~~~~~~-   77 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKG---FKARGLVLNISDIE-SIQNFFAEIK-   77 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTT---CCEEEEECCTTCHH-HHHHHHHHHH-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEecCCCHH-HHHHHHHHHH-
Confidence            4677887776554   2344455555 689999999988888777666554   25667777765431 0111111110 


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                ...+++|+++.|...
T Consensus        78 ----------~~~~~id~li~~Ag~   92 (247)
T 3lyl_A           78 ----------AENLAIDILVNNAGI   92 (247)
T ss_dssp             ----------HTTCCCSEEEECCCC
T ss_pred             ----------HHcCCCCEEEECCCC
Confidence                      034578999987653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=82.42  E-value=7.9  Score=30.60  Aligned_cols=89  Identities=12%  Similarity=0.070  Sum_probs=55.9

Q ss_pred             CCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      +.+|.-+|+|. |. ++..+++.+...+..+|.++..++.+.+..   ++     .. ..+...                
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~---g~-----~~-~~~~~~----------------   64 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV---EA-----EY-TTDLAE----------------   64 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT---TC-----EE-ESCGGG----------------
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc---CC-----ce-eCCHHH----------------
Confidence            45788899875 32 444555566544899999998776655432   22     11 111111                


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                               .....|+|+...+-....++++.+...++++..++.
T Consensus        65 ---------~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~  100 (266)
T 3d1l_A           65 ---------VNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVH  100 (266)
T ss_dssp             ---------SCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             ---------HhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEE
Confidence                     123579999876665567788888888888876655

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=82.37  E-value=4.1  Score=31.90  Aligned_cols=60  Identities=17%  Similarity=0.142  Sum_probs=41.3

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.++..++...+.+...+   .++.+...|....
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~   70 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINAEAAEAVAKQIVADG---GTAISVAVDVSDP   70 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTSH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcC---CcEEEEEccCCCH
Confidence            4778888887655   2444555555 579999999998888777665443   3566777776543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=82.05  E-value=4.4  Score=33.34  Aligned_cols=49  Identities=8%  Similarity=0.036  Sum_probs=35.4

Q ss_pred             CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          148 EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       148 ~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                      ..+|+|+..-+.....+.++.+...++++..++.....-...+.+.+.+
T Consensus        70 ~~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~  118 (320)
T 3i83_A           70 TKPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAF  118 (320)
T ss_dssp             SCCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHS
T ss_pred             CCCCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHC
Confidence            3689999877777777889999999999988776544444344554444

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=81.33  E-value=9.4  Score=30.01  Aligned_cols=60  Identities=17%  Similarity=0.051  Sum_probs=40.0

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+...+...+   .++.+...|....
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   67 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLEIEQFP---GQILTVQMDVRNT   67 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCST---TCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCH
Confidence            4677887776654   2344455555 589999999988888776654333   3567777776543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=81.31  E-value=7.3  Score=31.11  Aligned_cols=60  Identities=15%  Similarity=0.077  Sum_probs=39.2

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-cCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-NNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.+...++.+...+.. .+   .++.+...|....
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   89 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPRVLTAARKLAGATG---RRCLPLSMDVRAP   89 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHHHS---SCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcC---CcEEEEEcCCCCH
Confidence            4788898887665   2344455555 5899999998877666555432 23   2566777776543

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=81.28  E-value=6.7  Score=32.64  Aligned_cols=99  Identities=8%  Similarity=0.062  Sum_probs=52.6

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHh-CCCEEEEEeCChH---HHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKF-GAAMFVGVDIDPQ---VIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV  129 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~-~~~~v~gvD~s~~---~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (222)
                      +++|++||-.|+ | .|..+..+++. +...+..++.++.   ..+.++    ..|..  .+ +...+. ..     +. 
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~--~v-i~~~~~-~~-----~~-  230 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE--HV-ITEEEL-RR-----PE-  230 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS--EE-EEHHHH-HS-----GG-
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc--EE-EecCcc-hH-----HH-
Confidence            678999999997 3 36777777764 6444555555432   233343    33432  11 111100 00     00 


Q ss_pred             ccchhccccccccCCCCC-CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          130 DGVVEYLSSHEIRGISET-EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~-~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                 +...... +.+|+++-...-    .......++|+++|.+++.+
T Consensus       231 -----------~~~~~~~~~~~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          231 -----------MKNFFKDMPQPRLALNCVGG----KSSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             -----------GGGTTSSSCCCSEEEESSCH----HHHHHHHTTSCTTCEEEECC
T ss_pred             -----------HHHHHhCCCCceEEEECCCc----HHHHHHHHhhCCCCEEEEEe
Confidence                       0001111 248999865432    22245788999999998853

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=81.22  E-value=13  Score=29.15  Aligned_cols=58  Identities=16%  Similarity=0.129  Sum_probs=35.9

Q ss_pred             CCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           59 GELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        59 ~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      ++++|-.|++.|   .++..+++.+ .+|++++.++..++...+.+...+   .++.+...|...
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~   62 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAG---GHAVAVKVDVSD   62 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCC
Confidence            456777776544   2333444555 589999999887776655554433   256666666654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=81.17  E-value=4.3  Score=32.07  Aligned_cols=60  Identities=13%  Similarity=0.025  Sum_probs=41.6

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.++..++...+.+...+   .++.+...|....
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~   73 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAG-ASVVVTDLKSEGAEAVAAAIRQAG---GKAIGLECNVTDE   73 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEECCCCCH
Confidence            4778888887765   2444555666 579999999988887777665544   3566777776543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=80.92  E-value=3.9  Score=32.35  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=40.6

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++...+.+...+   .++.+...|....
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~   90 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDVEKLRAVEREIVAAG---GEAESHACDLSHS   90 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhC---CceeEEEecCCCH
Confidence            4678888886654   2333444555 579999999998888777665544   3677777776543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=80.85  E-value=13  Score=28.77  Aligned_cols=94  Identities=6%  Similarity=-0.042  Sum_probs=54.9

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ...+++-+|+  |.++..+++.   ... |+++|.++..++.++     .     .+.+..+|.....     .+...  
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~-----~~~~i~gd~~~~~-----~l~~a--   67 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S-----GANFVHGDPTRVS-----DLEKA--   67 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T-----TCEEEESCTTCHH-----HHHHT--
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c-----CCeEEEcCCCCHH-----HHHhc--
Confidence            3457887776  6777666643   123 999999998776554     1     2446667664331     00000  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                 ....+|.+++..+-+.....+....+.+.|+..++..
T Consensus        68 -----------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           68 -----------NVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             -----------TCTTCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             -----------CcchhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence                       2456898887655443334455566667787666653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=80.76  E-value=9.8  Score=30.01  Aligned_cols=60  Identities=12%  Similarity=-0.033  Sum_probs=38.0

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEE-eCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGV-DIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +++++|-.|++.|   .++..+++.+ .+|+.+ +.++..++...+.+...+   .++.+...|....
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G-~~vv~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   66 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENG-YNIVINYARSKKAALETAEEIEKLG---VKVLVVKANVGQP   66 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCH
Confidence            4677887776655   2344455566 466665 888887777766655443   2566777776543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=80.75  E-value=11  Score=30.07  Aligned_cols=59  Identities=12%  Similarity=0.067  Sum_probs=33.8

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHH-HHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQV-IKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      .++++|-.|++.|   .++..+++.+ .+|++++.++.. .+.+.+.+...+   .++.+...|...
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~   90 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNG---SDAACVKANVGV   90 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHHhC---CCeEEEEcCCCC
Confidence            4677887776654   2333444555 579999887643 444434343333   256666666644

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=80.50  E-value=8.5  Score=30.20  Aligned_cols=58  Identities=14%  Similarity=-0.002  Sum_probs=35.9

Q ss_pred             CCCcEEEEccCCCHHHHHH----HHhCCCEEEEEeC-ChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           58 GGELFLDYGTGSGILGIAA----IKFGAAMFVGVDI-DPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~l----a~~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      .++++|-.|++ |.++..+    ++.+ .+|++++. ++..++...+.+...+   .++.+...|...
T Consensus        20 ~~k~vlItGas-ggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~D~~~   82 (274)
T 1ja9_A           20 AGKVALTTGAG-RGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLG---AQGVAIQADISK   82 (274)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTS
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHHHHhcC---CcEEEEEecCCC
Confidence            46778877754 5555444    4455 58999998 7777666555554433   256666777654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=80.38  E-value=4.6  Score=32.55  Aligned_cols=60  Identities=12%  Similarity=0.003  Sum_probs=40.7

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+...+   .++.+...|....
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~   89 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTEVEEVADEIVGAG---GQAIALEADVSDE   89 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHTTTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCH
Confidence            5778888887665   2444555565 589999999988877766654433   3566777776543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=80.31  E-value=4.3  Score=32.20  Aligned_cols=61  Identities=11%  Similarity=-0.033  Sum_probs=41.1

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+...+-  .++.+...|....
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~   72 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTADIDACVADLDQLGS--GKVIGVQTDVSDR   72 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTSS--SCEEEEECCTTSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCC--CcEEEEEcCCCCH
Confidence            4677888776655   2344455556 5899999999988877776654432  2677777776543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=80.10  E-value=14  Score=29.28  Aligned_cols=60  Identities=15%  Similarity=0.040  Sum_probs=37.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCC------------hHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDID------------PQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.+|.+            ...++.....+...+   .++.+...|....
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   83 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEKTG---RRCISAKVDVKDR   83 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHhcC---CeEEEEeCCCCCH
Confidence            4788888887765   2444555566 579999986            555555555444433   2566777776543

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=80.05  E-value=10  Score=29.99  Aligned_cols=56  Identities=20%  Similarity=0.161  Sum_probs=35.1

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      .++++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+.      .++.+...|...
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~D~~~   63 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAVAALE------AEAIAVVADVSD   63 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCC------SSEEEEECCTTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc------CceEEEEcCCCC
Confidence            4677888876654   2334455555 589999999877665544321      256666676654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	3e-23
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	2e-10
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-08
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	5e-08
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	7e-07
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-06
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	9e-06
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	2e-05
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	3e-05
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	3e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	6e-05
d1booa_	320	c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA me	7e-05
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	1e-04
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-04
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	1e-04
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	0.003

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 91.9 bits (227), Expect = 3e-23
 Identities = 56/219 (25%), Positives = 90/219 (41%), Gaps = 30/219 (13%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
               P        ++  W T    +   +++ PG+AFGTG H TT+L L  L   ++ G+
Sbjct: 65  RDLKPALAPP-FVVLAPWHTWEGAE-IPLVIEPGMAFGTGHHETTRLALKALARHLRPGD 122

Query: 61  LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
             LD GTGSG+L IAA K G    +GVDIDP V+  A  NA  N           V  R 
Sbjct: 123 KVLDLGTGSGVLAIAAEKLGGKA-LGVDIDPMVLPQAEANAKRNG----------VRPRF 171

Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
              S+   +                    +D+++AN+       LA        PG    
Sbjct: 172 LEGSLEAALP----------------FGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

Query: 181 ISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTK 218
           ++GIL ++ P +    +      +  + + +W  ++  +
Sbjct: 216 LTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 10/179 (5%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS 96
           + T  +A ++L  L        G++  D G G+G+L   A+  GA   + V++D + +  
Sbjct: 25  YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV 84

Query: 97  AHQNAALNNIGPKKIKLHL--VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVI 154
             +N        K     +     R     MN       ++     +    E  +    I
Sbjct: 85  LIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSI 144

Query: 155 ANILLNPLPQLADHIVSYAKP-GAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWR 212
                   P++   I  ++   G VV        ++P     + + LE I V   D +R
Sbjct: 145 HLA----KPEVRRFIEKFSWEHGFVVTHRLTTKIEIPLQFFFHRKKLERITV---DIYR 196

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 25/164 (15%)

Query: 50  LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP 108
           L++        ++ +D G G+G + +            +D +P+ I +   N   + +G 
Sbjct: 24  LIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGD 82

Query: 109 KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADH 168
                                   V  +       + +  + D+ +       L ++   
Sbjct: 83  N-----------------------VTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRI 119

Query: 169 IVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWR 212
           I    KPG  + ++ IL E     +    +   D+ ++E +  R
Sbjct: 120 IKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNITELNIAR 163

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 8/169 (4%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS 96
           + T         + +      GG   +D GTG+GIL   +   GA      DIDP  I++
Sbjct: 27  YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET 86

Query: 97  AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIAN 156
           A +N    N       +  +  +  T  MN     VV++     I    ET  +   I N
Sbjct: 87  AKRNCGGVNF--MVADVSEISGKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGN 144

Query: 157 ILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILV 205
                  +  D +         V     +   +PRI   +S     I  
Sbjct: 145 A------KARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIEA 187

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (110), Expect = 7e-07
 Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 16/167 (9%)

Query: 56  IKGGELFLDYGTGSG-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH 114
           +K G+ F+D G+G G  +  AA++ G A+  G +I                   K   + 
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273

Query: 115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSY 172
           L              + V E +              DV++ N  L    L +  + I+  
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQ-----------CDVILVNNFLFDEDLNKKVEKILQT 322

Query: 173 AKPGAVVGISGILSEQLPRIINRYSEFLEDIL-VSEKDDW-RCVSGT 217
           AK G  +     L     +I     E + + L V   D     VS T
Sbjct: 323 AKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWT 369

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 28/189 (14%), Positives = 49/189 (25%), Gaps = 20/189 (10%)

Query: 31  LNPGLAFGTGEHATTKLCLL--LLQSL-IKGGELFLDYGTGSGILGI-AAIKFGAAMFVG 86
           LN    F    +  T   L+  ++  + +   +LF+D G+G G + +  A         G
Sbjct: 121 LNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYG 180

Query: 87  VDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISE 146
           V+      K A           K                                     
Sbjct: 181 VEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-------------LSEEWRER 227

Query: 147 TEEYDVVIANILL--NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY-SEFLEDI 203
                V+  N       +        +  K G  +  S   +    RI +R  S+    +
Sbjct: 228 IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIM 287

Query: 204 LVSEKDDWR 212
            V E    +
Sbjct: 288 RVVELSPLK 296

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 9e-06
 Identities = 15/75 (20%), Positives = 28/75 (37%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL 115
           I   ++ LD G G+GIL + A K GA   +GVD    + ++              +    
Sbjct: 33  IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK 92

Query: 116 VPDRTFTASMNERVD 130
           + +        + + 
Sbjct: 93  IEEVHLPVEKVDVII 107

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 6   VEVTKGL--WIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFL 63
           +EV +G    ++P+      +  + +  NP +A          + ++LL  L    ++ L
Sbjct: 2   IEVQEGKAKILIPK---AESIYDSPVFYNPRMALNR------DIVVVLLNIL--NPKIVL 50

Query: 64  DYGTGSGILGI-AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK 110
           D  + +GI GI  A++  A      DI     +   +N  LN  G  +
Sbjct: 51  DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 98

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 18/171 (10%), Positives = 42/171 (24%), Gaps = 17/171 (9%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101
               +            G+  +D G+G  I  + A           D   +  +   +  
Sbjct: 35  KFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWL 94

Query: 102 ALNNIGPKKIK-----LHLVPDRTFTASMNERVDGVVEYLSSHEIRG-----ISETEEYD 151
                             L  +        E++   V+ +   ++        +     D
Sbjct: 95  KKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLAD 154

Query: 152 VVIANILLN-------PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINR 195
            V+  + +               ++ S  KPG  +  +  L      +  R
Sbjct: 155 CVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR 205

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 15/75 (20%), Positives = 28/75 (37%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL 115
           +   ++ LD G G+GIL + A K GA   +GVD+   +  +              +    
Sbjct: 36  LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGK 95

Query: 116 VPDRTFTASMNERVD 130
           + D        + + 
Sbjct: 96  LEDVHLPFPKVDIII 110

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN 104
           +   ++ LD G+G+GIL + A K GA   +G++       +     A  
Sbjct: 31  LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANK 79

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} Length = 320

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

 Score = 40.5 bits (93), Expect = 7e-05
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 10  KGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTK---LCLLLLQSLIKGGELFLDYG 66
            G  I P      + ++    L      G   H       L    ++ L +  +L +D  
Sbjct: 199 NGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKLPEFFIRMLTEPDDLVVDIF 258

Query: 67  TGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK 112
            GS   G+ A +     ++  ++ P+ + ++      NNI  +KI 
Sbjct: 259 GGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNISEEKIT 303

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 10/121 (8%)

Query: 2   SFHPVEVTKGLWI-----VPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLI 56
           +    E   G W      + E + P  +     +         G      +    L++ +
Sbjct: 69  TGDTDEDGMGRWRFPKEALGE-TWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAV 127

Query: 57  KG---GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL 113
           +        L+    +G+  + A   GA +   VD   + I  A +N  L  +    I+ 
Sbjct: 128 ETADRPLKVLNLFGYTGVASLVAAAAGAEV-THVDASKKAIGWAKENQVLAGLEQAPIRW 186

Query: 114 H 114
            
Sbjct: 187 I 187

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 22/59 (37%)

Query: 50  LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP 108
            L++   K G+  LD G G G   +   + G   + GVDI    I  A   A       
Sbjct: 16  CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF 74

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 27/164 (16%)

Query: 52  LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI 111
           +  + K  EL +D   G G L +    +G A  + ++ DP   K   +N  LN +   ++
Sbjct: 101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-EDRM 159

Query: 112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVS 171
             + + +R F                             D ++   ++     +    +S
Sbjct: 160 SAYNMDNRDFPGENI-----------------------ADRILMGYVVRTHEFI-PKALS 195

Query: 172 YAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVS 215
            AK GA++     + E    +     E  + I      D   ++
Sbjct: 196 IAKDGAIIHYHNTVPE--KLMPREPFETFKRITKEYGYDVEKLN 237

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 62  FLDYGTGSGILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
            +D GTG+  +            F+  ++D      A +N   NN+      + +     
Sbjct: 65  GIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL 124

Query: 121 FTASMNERVDG 131
              ++ E  + 
Sbjct: 125 LMDALKEESEI 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.82
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.79
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.79
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.78
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.76
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.75
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.74
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.73
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.71
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.7
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.7
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.7
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.69
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.68
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.67
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.66
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.66
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.66
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.64
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.64
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.64
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.64
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.64
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.62
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.6
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.6
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.59
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.59
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.58
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.58
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.57
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.57
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.56
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.55
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.55
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.54
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.53
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.53
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.53
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.53
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.53
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.52
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.52
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.51
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.51
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.51
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.5
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.49
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.48
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.48
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.47
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.47
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.46
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.45
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.44
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.42
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.41
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.4
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.37
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.35
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.33
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.32
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.31
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.28
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.25
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.24
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.2
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.17
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.14
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.12
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.1
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.03
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.03
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.02
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.01
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.98
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.96
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.92
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.91
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.91
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.9
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.88
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.87
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.85
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.84
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.79
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.76
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.7
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.53
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.43
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.36
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.35
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.25
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.09
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.07
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.8
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.74
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.74
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.66
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.63
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.62
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.59
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.57
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.54
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.53
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.5
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.42
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.4
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.27
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.24
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.12
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.96
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.91
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.89
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.88
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.78
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.47
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.47
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.09
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.03
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.94
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.91
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.91
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.81
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.66
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.64
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.3
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.16
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.14
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.76
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.5
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.5
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.47
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.83
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.52
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.26
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.94
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.86
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.81
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.73
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.68
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.65
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.6
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.54
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.27
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.21
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.83
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	91.67
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.51
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.41
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.16
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	91.06
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.06
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.89
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.83
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.77
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.75
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.74
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	90.53
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.5
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.38
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.97
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.93
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.3
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.12
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.9
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	88.79
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	88.07
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.95
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.74
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.69
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	87.63
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.86
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	85.9
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	85.9
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	85.77
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.72
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	85.52
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	85.28
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.71
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.63
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	84.55
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	84.0
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	82.2
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.97
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	81.75
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	80.47
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	80.28

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.1e-33  Score=229.46  Aligned_cols=188  Identities=28%  Similarity=0.465  Sum_probs=160.6

Q ss_pred             CccceEeccceeeeecCCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCC
Q 047371            2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGA   81 (222)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~   81 (222)
                      +|+|+.++. .++.|+|.+.. ..+..+.++|+++||+|+|++++++++++....++|++|||+|||+|.+++.+++.+ 
T Consensus        66 ~~~p~~~~~-~~v~~~~~~~~-~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g-  142 (254)
T d2nxca1          66 DLKPALAPP-FVVLAPWHTWE-GAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG-  142 (254)
T ss_dssp             HCCCEEETT-EEEECTTCCCC-SSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT-
T ss_pred             hCCCEEECC-EEEEeccccCC-CcceEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcC-
Confidence            699999875 67999998764 467999999999999999999999999999999999999999999999999988886 


Q ss_pred             CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371           82 AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus        82 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                      .+|+|+|+|+.+++.|++|+..+++.   ..+...+.....                       +.++||+|++|...+.
T Consensus       143 ~~V~gvDis~~av~~A~~na~~n~~~---~~~~~~d~~~~~-----------------------~~~~fD~V~ani~~~~  196 (254)
T d2nxca1         143 GKALGVDIDPMVLPQAEANAKRNGVR---PRFLEGSLEAAL-----------------------PFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CEEEEEESCGGGHHHHHHHHHHTTCC---CEEEESCHHHHG-----------------------GGCCEEEEEEECCHHH
T ss_pred             CEEEEEECChHHHHHHHHHHHHcCCc---eeEEeccccccc-----------------------cccccchhhhcccccc
Confidence            68999999999999999999998874   345555443221                       5678999999988888


Q ss_pred             HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceEeeccc
Q 047371          162 LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTK  218 (222)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k  218 (222)
                      +.++++.+.+.|||||+++++++...+..++.+.+... |...+....++|.++..+|
T Consensus       197 l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l~~~r  254 (254)
T d2nxca1         197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEECCEEEEEEeC
Confidence            88999999999999999999999999999999998876 8888888999999998876

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.82  E-value=2.5e-19  Score=140.38  Aligned_cols=149  Identities=19%  Similarity=0.241  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      .++++.+.+.  ..++++|||+|||+|.+++.+++.. .+++++|+|+.+++.|++++..+++...++.+...|....  
T Consensus        40 ~t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~--  114 (194)
T d1dusa_          40 GTKILVENVV--VDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--  114 (194)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--
T ss_pred             HHHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh--
Confidence            3444444332  4578999999999999999998764 6899999999999999999999888766788877775432  


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                                           .++++||+|++|++++.    ...+++.+.++|||||.+++..........+...+...
T Consensus       115 ---------------------~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~  173 (194)
T d1dusa_         115 ---------------------VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV  173 (194)
T ss_dssp             ---------------------CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred             ---------------------hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHh
Confidence                                 15678999999999876    34578999999999999988644444455666666666


Q ss_pred             hhcce-ecccCCceEeeccc
Q 047371          200 LEDIL-VSEKDDWRCVSGTK  218 (222)
Q Consensus       200 ~~~~~-~~~~~~w~~~~~~k  218 (222)
                      |..++ ....++|..+..+|
T Consensus       174 f~~~~~~~~~~gf~vl~a~K  193 (194)
T d1dusa_         174 FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HSCCEEEEEETTEEEEEEEC
T ss_pred             CCcEEEEEecCCcEEEEEEE
Confidence            54444 45678898888776

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=6.8e-19  Score=141.30  Aligned_cols=105  Identities=12%  Similarity=0.229  Sum_probs=92.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++|.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...++.  ++.+...+...++.            
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~--~~~~~~~d~~~~~~------------   78 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE--NVRFQQGTAESLPF------------   78 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCC--SEEEEECBTTBCCS------------
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhcccccc--cccccccccccccc------------
Confidence            6799999999999999999999875 68999999999999999999888875  78999988876643            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                ++++||+|+|...+++   ...+++++.++|||||++++....
T Consensus        79 ----------~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~  121 (234)
T d1xxla_          79 ----------PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  121 (234)
T ss_dssp             ----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----------cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence                      6889999999988876   567899999999999999886443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.79  E-value=1e-18  Score=135.92  Aligned_cols=133  Identities=17%  Similarity=0.213  Sum_probs=109.6

Q ss_pred             chhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           43 ATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        43 ~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      ++...+..++...  .+++++|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|++.+++. +++++..++...
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~-~~v~~~~gda~~   93 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPE   93 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCC-cceEEEECchhh
Confidence            3454454444333  568999999999999999999876 469999999999999999999999986 589998888655


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                      ...                      +...||+|+++.+.++..++++.+.+.|||||++++.....++...+.+.+...
T Consensus        94 ~~~----------------------~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~  150 (186)
T d1l3ia_          94 ALC----------------------KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL  150 (186)
T ss_dssp             HHT----------------------TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred             ccc----------------------ccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHc
Confidence            432                      567899999999988899999999999999999999877667777777777665

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.78  E-value=2.1e-18  Score=137.55  Aligned_cols=110  Identities=20%  Similarity=0.223  Sum_probs=92.7

Q ss_pred             HHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccc
Q 047371           50 LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNER  128 (222)
Q Consensus        50 ~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  128 (222)
                      ++++.. ++++++|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+..  ++.+...+...++.     
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~~--~i~~~~~d~~~l~~-----   77 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPF-----   77 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCC-CCCS-----
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhcccccccc--cccccccccccccc-----
Confidence            334333 6789999999999999999998886 68999999999999999999887765  89999998876643     


Q ss_pred             cccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          129 VDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                       ++++||+|++...+++   ...+++++.++|||||++++.+.
T Consensus        78 -----------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          78 -----------------TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             -----------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------------cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence                             6789999999988876   45689999999999999998543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.2e-17  Score=133.92  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=121.1

Q ss_pred             eeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      ..|.++|+---  ...+|..++...+....+.+.+|||+|||+|.+++.++. .+..+++|+|+|+.+++.|++|+..++
T Consensus        79 ~~~~v~~~VlI--PRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~  156 (274)
T d2b3ta1          79 LPLFVSPATLI--PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA  156 (274)
T ss_dssp             EEEECCTTSCC--CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEeccccc--cccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC
Confidence            56777777543  233455555556655555677899999999999998876 467899999999999999999999999


Q ss_pred             CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------------------
Q 047371          106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------  161 (222)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------  161 (222)
                      ++  ++.+...|.....                       +.++||+|++|||+-.                        
T Consensus       157 ~~--~v~~~~~d~~~~~-----------------------~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~d  211 (274)
T d2b3ta1         157 IK--NIHILQSDWFSAL-----------------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADS  211 (274)
T ss_dssp             CC--SEEEECCSTTGGG-----------------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHH
T ss_pred             cc--cceeeeccccccc-----------------------CCCceeEEEecchhhhhhhhcccccccccchhhhcccccc
Confidence            85  7888887753321                       4678999999999732                        


Q ss_pred             ----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecc--cCCceEeec
Q 047371          162 ----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSE--KDDWRCVSG  216 (222)
Q Consensus       162 ----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~w~~~~~  216 (222)
                          +..+++.+.++|+|||.+++. +...+...+.+.+... |..+++..  .|.-+++.+
T Consensus       212 Gl~~~~~i~~~a~~~L~~~G~l~lE-ig~~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~  272 (274)
T d2b3ta1         212 GMADIVHIIEQSRNALVSGGFLLLE-HGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLG  272 (274)
T ss_dssp             HTHHHHHHHHHHGGGEEEEEEEEEE-CCSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEE
T ss_pred             cchHHHHHHHHHHHhcCCCCEEEEE-ECchHHHHHHHHHHHCCCCeEEEEECCCCCceEEEE
Confidence                345789999999999999995 5667788888887765 65554332  244444443

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=7.7e-18  Score=136.02  Aligned_cols=115  Identities=18%  Similarity=0.195  Sum_probs=95.8

Q ss_pred             hHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           45 TKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        45 ~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      +......+...  ++||++|||+|||+|.++..+++....+++|+|+|+.+++.|+++....++. +++++...|...+.
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~-~~v~~~~~d~~~~~   96 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAGYV   96 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTTCC
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc-ccchhhhhHHhhcc
Confidence            33344445444  7789999999999999999988764479999999999999999999988886 47999998876542


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEec
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                             ++++||+|++...+++.   ..+++++.+.|||||.+++..
T Consensus        97 -----------------------~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          97 -----------------------ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             -----------------------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             -----------------------ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence                                   67889999998887764   678999999999999999853

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=1.4e-17  Score=131.71  Aligned_cols=110  Identities=22%  Similarity=0.243  Sum_probs=90.6

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      +..++.++++++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+.   ++.+...++..+..    
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~---~~~~~~~d~~~l~~----   98 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRES---NVEFIVGDARKLSF----   98 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CCEEEECCTTSCCS----
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhccccc---cccccccccccccc----
Confidence            445566667888999999999999999999875 6899999999999999998876653   45667777766533    


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEec
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                        ++++||+|++..+++++     ..+++++.++|||||.+++..
T Consensus        99 ------------------~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~  141 (226)
T d1ve3a1          99 ------------------EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF  141 (226)
T ss_dssp             ------------------CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------------cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence                              67899999998888763     347999999999999998853

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.74  E-value=3.3e-17  Score=130.64  Aligned_cols=117  Identities=17%  Similarity=0.194  Sum_probs=93.2

Q ss_pred             hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      ..+.+..++..+.+++.+|||+|||+|..+..+++.   +..+|+|+|+|+.|++.|++++...+.. .++.+...+...
T Consensus        25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~-~~~~~~~~d~~~  103 (225)
T d1im8a_          25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRH  103 (225)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS-SCEEEECSCTTT
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc-chhhhccchhhc
Confidence            344556666677889999999999999999998874   5679999999999999999998766644 356666655544


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                      +                        +...+|+++++..+++     ...+++++++.|||||.+++.+..
T Consensus       104 ~------------------------~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         104 V------------------------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             C------------------------CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c------------------------ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            3                        5677999999877765     346899999999999999997554

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.73  E-value=1.7e-17  Score=136.72  Aligned_cols=106  Identities=15%  Similarity=0.140  Sum_probs=92.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....++. +++++...+...++.            
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~-~~v~~~~~d~~~l~~------------  131 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSFLEIPC------------  131 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCSS------------
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc-ccccccccccccccc------------
Confidence            5689999999999999999998764468999999999999999999988886 589999999877644            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ++++||+|++..++++   ...+++++.++|||||.+++.+.
T Consensus       132 ----------~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         132 ----------EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             ----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence                      6789999999888766   55689999999999999998543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.71  E-value=7.6e-17  Score=130.73  Aligned_cols=111  Identities=21%  Similarity=0.214  Sum_probs=90.4

Q ss_pred             HHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        51 ~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      ++..+.+++++|||+|||+|..+..+++.+..+|+|+|+|+.+++.|+++....+.. .++.+...|......       
T Consensus        17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~-------   88 (252)
T d1ri5a_          17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHM-------   88 (252)
T ss_dssp             HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCC-------
T ss_pred             HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC-cceEEEEcchhhhcc-------
Confidence            345567889999999999999999998888789999999999999999988766554 478888887643321       


Q ss_pred             cchhccccccccCCCCCCCeeEEEeccccccH-------HHHHHHHHHcccCCeEEEEec
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNPL-------PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-------~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                    ...++||+|+|...++++       ..+++++.+.|||||++++..
T Consensus        89 --------------~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          89 --------------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             --------------CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --------------cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence                          146689999999888763       458999999999999998864

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.7e-17  Score=127.94  Aligned_cols=131  Identities=16%  Similarity=0.175  Sum_probs=101.4

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|++++...+..  ++++...+...+..             
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~--~~~f~~~d~~~~~~-------------  123 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR--VRNYFCCGLQDFTP-------------  123 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG--EEEEEECCGGGCCC-------------
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc--cccccccccccccc-------------
Confidence            356789999999999999877655679999999999999999998776653  77888888766543             


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCC--------------CcHHHHHHHHH
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILS--------------EQLPRIINRYS  197 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~~~  197 (222)
                               +.++||+|++..+++++     ..+++++++.|||||.+++.+...              ....++.+.+.
T Consensus       124 ---------~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (222)
T d2ex4a1         124 ---------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC  194 (222)
T ss_dssp             ---------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHH
T ss_pred             ---------ccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHH
Confidence                     57899999999888874     358999999999999999853321              24566777776


Q ss_pred             hh-hhcceecccCCc
Q 047371          198 EF-LEDILVSEKDDW  211 (222)
Q Consensus       198 ~~-~~~~~~~~~~~w  211 (222)
                      +. |..+.......|
T Consensus       195 ~aGf~ii~~~~q~~f  209 (222)
T d2ex4a1         195 SAGLSLLAEERQENL  209 (222)
T ss_dssp             HTTCCEEEEEECCSC
T ss_pred             HcCCEEEEEEEeCCC
Confidence            64 766665544433

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.70  E-value=2.6e-16  Score=131.84  Aligned_cols=157  Identities=11%  Similarity=0.029  Sum_probs=122.8

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      +...+.+++...+.+|.+...+.....+...+.+|++|||++||+|.+++.++..+..+|+++|+++.+++.|++|+..+
T Consensus       111 ~Gl~f~vdl~~g~ktGlflDqR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n  190 (317)
T d2b78a2         111 NGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN  190 (317)
T ss_dssp             TTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT
T ss_pred             CCEEEEEEcccccccCCcHHHHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHh
Confidence            45678888888888888877776656555666779999999999999999988888889999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc------------cHHHHHHHHHHc
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN------------PLPQLADHIVSY  172 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~------------~~~~~l~~~~~~  172 (222)
                      ++...++++...|...+..       ..           ....++||+|+++||..            .+.+++..+.++
T Consensus       191 ~l~~~~~~~i~~d~~~~l~-------~~-----------~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~l  252 (317)
T d2b78a2         191 HLDMANHQLVVMDVFDYFK-------YA-----------RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI  252 (317)
T ss_dssp             TCCCTTEEEEESCHHHHHH-------HH-----------HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHT
T ss_pred             cccCcceEEEEccHHHHHH-------HH-----------HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHH
Confidence            9876688898888743311       00           00356899999999853            256789999999


Q ss_pred             ccCCeEEEEe-cCCCCcHHHHHHHHHhh
Q 047371          173 AKPGAVVGIS-GILSEQLPRIINRYSEF  199 (222)
Q Consensus       173 LkpgG~l~~~-~~~~~~~~~~~~~~~~~  199 (222)
                      |+|||.++++ |...-...++.+.+.+.
T Consensus       253 l~pgG~l~~~scs~~~~~~~f~~~v~~a  280 (317)
T d2b78a2         253 LSENGLIIASTNAANMTVSQFKKQIEKG  280 (317)
T ss_dssp             EEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCEEEEEeCCccCCHHHHHHHHHHH
Confidence            9999999985 44555566666655554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=1.2e-16  Score=131.72  Aligned_cols=132  Identities=14%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             eeEEeCCCcccccCCcc--------hhH-HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH
Q 047371           27 TNIILNPGLAFGTGEHA--------TTK-LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS   96 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~~--------~~~-~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~   96 (222)
                      +.+.++|.+.|+++...        ... .+..++..+ +++|++|||+|||+|.++..+++....+|+|+|+|+.+++.
T Consensus        11 y~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~   90 (280)
T d2fk8a1          11 FALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHAR   90 (280)
T ss_dssp             HTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred             HHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHH
Confidence            33456666666555443        112 222333333 67899999999999999999887644799999999999999


Q ss_pred             HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHH
Q 047371           97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVS  171 (222)
Q Consensus        97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~  171 (222)
                      |++++...++. .++.+...+...                         ..++||.|++..+++++     ..+++.+.+
T Consensus        91 a~~~~~~~~l~-~~~~~~~~d~~~-------------------------~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~  144 (280)
T d2fk8a1          91 CEQVLASIDTN-RSRQVLLQGWED-------------------------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFN  144 (280)
T ss_dssp             HHHHHHTSCCS-SCEEEEESCGGG-------------------------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHH
T ss_pred             HHHHHHhhccc-cchhhhhhhhhh-------------------------hccchhhhhHhhHHHHhhhhhHHHHHHHHHh
Confidence            99999988886 466666555432                         35689999998888763     678999999


Q ss_pred             cccCCeEEEEecC
Q 047371          172 YAKPGAVVGISGI  184 (222)
Q Consensus       172 ~LkpgG~l~~~~~  184 (222)
                      +|||||.+++..+
T Consensus       145 ~LkpgG~~~i~~i  157 (280)
T d2fk8a1         145 IMPADGRMTVQSS  157 (280)
T ss_dssp             HSCTTCEEEEEEE
T ss_pred             ccCCCceEEEEEe
Confidence            9999999998543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.8e-16  Score=133.29  Aligned_cols=144  Identities=20%  Similarity=0.219  Sum_probs=114.8

Q ss_pred             ccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEe
Q 047371           36 AFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL  115 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~  115 (222)
                      ...+|.+...+....++..++++|++|||+|||+|.+++.++..+..+|+++|+++.+++.|++|+..+++. .++.+..
T Consensus       123 ~~~tG~flDqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~-~~~~~~~  201 (324)
T d2as0a2         123 GQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-DRMKFIV  201 (324)
T ss_dssp             SSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEE
T ss_pred             ccccCcccchhhHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC-ccceeee
Confidence            456788888888888998888999999999999999999999888789999999999999999999999986 4788888


Q ss_pred             cCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEe-
Q 047371          116 VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGIS-  182 (222)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~-  182 (222)
                      .|.......+.                  ....+||+|++++|...            +.+++..+.++|+|||.++++ 
T Consensus       202 ~d~~~~~~~~~------------------~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         202 GSAFEEMEKLQ------------------KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             SCHHHHHHHHH------------------HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             chhhhhhHHHH------------------hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            77643211000                  04568999999998642            566889999999999998874 


Q ss_pred             cCCCCcHHHHHHHHHh
Q 047371          183 GILSEQLPRIINRYSE  198 (222)
Q Consensus       183 ~~~~~~~~~~~~~~~~  198 (222)
                      +...-+..++.+.+.+
T Consensus       264 ~s~~~~~~~f~~~v~~  279 (324)
T d2as0a2         264 CSQHVDLQMFKDMIIA  279 (324)
T ss_dssp             CCTTSCHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHH
Confidence            4455555666655544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=5.2e-16  Score=128.53  Aligned_cols=131  Identities=11%  Similarity=0.110  Sum_probs=99.4

Q ss_pred             EEeCCCcccccCCcc--------hhHHHHHHH-Hhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHH
Q 047371           29 IILNPGLAFGTGEHA--------TTKLCLLLL-QSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAH   98 (222)
Q Consensus        29 ~~~~~~~~f~~~~~~--------~~~~~~~~l-~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~   98 (222)
                      +.++|.+.|+++..+        ......+.+ .+. +++|++|||+|||.|.++..+++...++++|+++|+.+++.|+
T Consensus        22 ~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~  101 (291)
T d1kpia_          22 LWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK  101 (291)
T ss_dssp             HHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             HhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH
Confidence            345566555544443        222223333 333 6789999999999999999888653479999999999999999


Q ss_pred             HHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH------------HHHH
Q 047371           99 QNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------------PQLA  166 (222)
Q Consensus        99 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------------~~~l  166 (222)
                      +.+...++. .++.+...+...                         .+++||.|++..+++|+            ..++
T Consensus       102 ~~~~~~~l~-~~v~~~~~d~~~-------------------------~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f  155 (291)
T d1kpia_         102 AMFDEVDSP-RRKEVRIQGWEE-------------------------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFF  155 (291)
T ss_dssp             HHHHHSCCS-SCEEEEECCGGG-------------------------CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHH
T ss_pred             HHHHhhccc-hhhhhhhhcccc-------------------------cccccceEeechhHHhcchhhhhhHHHHHHHHH
Confidence            999988886 467777665421                         46789999998888763            5789


Q ss_pred             HHHHHcccCCeEEEEecCC
Q 047371          167 DHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~~  185 (222)
                      +.+.++|||||.+++..+.
T Consensus       156 ~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         156 KKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             HHHHHTSCTTCEEEEEEEE
T ss_pred             HHHHHhCCCCCceEEEEEe
Confidence            9999999999999986553

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=4.1e-16  Score=125.52  Aligned_cols=108  Identities=21%  Similarity=0.258  Sum_probs=86.5

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      +..++... .+++++|||+|||+|..+..+++.+ .+++|+|+|+.|++.|++++...++   ++++...+++.+.    
T Consensus        30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~-~~v~gvD~s~~mi~~a~~~~~~~~~---~i~~~~~d~~~l~----  101 (251)
T d1wzna1          30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLEIA----  101 (251)
T ss_dssp             HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGGCC----
T ss_pred             HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc-eEEEEEeeccccccccccccccccc---cchheehhhhhcc----
Confidence            33444444 3456789999999999999999986 5899999999999999999887665   6888888887664    


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEec-ccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIAN-ILLNP-----LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~-~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                         ..++||+|++. ..+++     ...++++++++|||||++++.
T Consensus       102 -------------------~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         102 -------------------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             -------------------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------------------cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence                               34689999985 34443     346899999999999999885

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.66  E-value=2.4e-16  Score=127.69  Aligned_cols=123  Identities=22%  Similarity=0.202  Sum_probs=100.8

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++||++|||+|||+|.++..+++.  +.++|+++|.++.+++.|++++...+.. .++++...|.....           
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~-~nv~~~~~Di~~~~-----------  150 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFI-----------  150 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCC-----------
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC-CceEEEEeeeeccc-----------
Confidence            789999999999999999999875  5679999999999999999999876543 58889888775431           


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (222)
                                  +++.||.|+++.+-.  ..+++++.+.|||||++++.....++..++.+.+++. |..++
T Consensus       151 ------------~~~~fD~V~ld~p~p--~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~  208 (250)
T d1yb2a1         151 ------------SDQMYDAVIADIPDP--WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE  208 (250)
T ss_dssp             ------------CSCCEEEEEECCSCG--GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred             ------------ccceeeeeeecCCch--HHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeE
Confidence                        567899999986543  4679999999999999998766667788888888765 54433

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=7.4e-16  Score=120.35  Aligned_cols=101  Identities=23%  Similarity=0.317  Sum_probs=86.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++ .+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++....++.  ++.+...|...+.             
T Consensus        29 ~~~-grvLDiGcG~G~~~~~la~~g-~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~d~~~~~-------------   91 (198)
T d2i6ga1          29 VAP-GRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAAEGLD--NLQTDLVDLNTLT-------------   91 (198)
T ss_dssp             SCS-CEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEECCTTTCC-------------
T ss_pred             CCC-CcEEEECCCCCHHHHHHHHHh-hhhccccCcHHHHHHHHHHhhhcccc--chhhhheeccccc-------------
Confidence            444 489999999999999999886 58999999999999999999888875  7888888776543             


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEec
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                .+++||+|+++..++++     ..+++.+.++|+|||++++..
T Consensus        92 ----------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1          92 ----------FDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             ----------CCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ----------ccccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                      56789999999888773     468999999999999998853

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.66  E-value=4.3e-16  Score=125.51  Aligned_cols=108  Identities=15%  Similarity=0.077  Sum_probs=84.9

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      +.+.+.....++.+|||+|||+|.++..+++.+ .+++|+|+|+.|++.|++++...++   ++++...|...+.     
T Consensus        27 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g-~~v~GvD~S~~ml~~A~~~~~~~~~---~v~~~~~d~~~~~-----   97 (246)
T d1y8ca_          27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLN-----   97 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCC-----
T ss_pred             HHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC-CccEeeccchhhhhhccccccccCc---cceeeccchhhhc-----
Confidence            334444444557899999999999999999886 5899999999999999998877665   5778888776553     


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEec-ccccc------HHHHHHHHHHcccCCeEEEEe
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIAN-ILLNP------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~-~~~~~------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                        ..++||+|+|. ..+++      ...++++++++|||||.+++.
T Consensus        98 ------------------~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          98 ------------------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             ------------------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ------------------ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                              35689999984 33332      345899999999999999874

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=6.1e-16  Score=127.74  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=88.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +++|.+|||+|||.|..++.+++...++|+|+++|+.+++.|++++...++. +++++...|...+              
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~-~~v~~~~~d~~~~--------------  124 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-RSKRVLLAGWEQF--------------  124 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEESCGGGC--------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh-hhhHHHHhhhhcc--------------
Confidence            6799999999999999999888764479999999999999999999888876 5888888776433              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                 +++||.|++...++++     ..+++++.++|||||.+++..+
T Consensus       125 -----------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         125 -----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             -----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             -----------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence                       4689999998887763     5789999999999999998544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=9.6e-16  Score=124.99  Aligned_cols=132  Identities=18%  Similarity=0.288  Sum_probs=103.0

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      +...+.+++...|-...+.+.+   ..+...+++|++|||+|||+|.+++.+++.+.++|+++|+|+.+++.+++|+..+
T Consensus        77 ~g~~~~~d~~~~~f~~~~~~er---~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n  153 (260)
T d2frna1          77 NGIKYKLDVAKIMFSPANVKER---VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN  153 (260)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHH---HHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCeeEEeccccccEecCCHHHH---HHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHh
Confidence            4566777776544222222222   2344557899999999999999999999888789999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ++. +++++..+|+..+.                       +.+.||.|++++|.. ..++++.+.+.|++||.+.+.++
T Consensus       154 ~l~-~~v~~~~~D~~~~~-----------------------~~~~~D~Ii~~~p~~-~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         154 KVE-DRMSAYNMDNRDFP-----------------------GENIADRILMGYVVR-THEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             TCT-TTEEEECSCTTTCC-----------------------CCSCEEEEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCC-ceEEEEEcchHHhc-----------------------cCCCCCEEEECCCCc-hHHHHHHHHhhcCCCCEEEEEec
Confidence            997 47899888876552                       467899999998765 34678889999999999876443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1.2e-15  Score=127.87  Aligned_cols=151  Identities=17%  Similarity=0.184  Sum_probs=113.6

Q ss_pred             cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ....+.+++.....+|.....+....++. .. +|++|||+|||+|.+++.++.. ..+|+++|+|+.+++.|++|+..+
T Consensus       114 ~G~~f~v~l~~~~~tG~flDqr~~r~~~~-~~-~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~n  190 (318)
T d1wxxa2         114 GRVRYLVDLRAGQKTGAYLDQRENRLYME-RF-RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLN  190 (318)
T ss_dssp             TTEEEEEECSTTSCCCCCGGGHHHHHHGG-GC-CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEechhccccccchhhhhhHHHHH-Hh-CCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHc
Confidence            35677788877777888777766554443 32 6899999999999999988764 579999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHc
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSY  172 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~  172 (222)
                      ++.  ++++...|...+...+.                  ...++||+|++++|...            +.+++..+.++
T Consensus       191 gl~--~~~~i~~d~~~~~~~~~------------------~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~l  250 (318)
T d1wxxa2         191 GLG--NVRVLEANAFDLLRRLE------------------KEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKL  250 (318)
T ss_dssp             TCT--TEEEEESCHHHHHHHHH------------------HTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHT
T ss_pred             CCC--CcceeeccHHHHhhhhH------------------hhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHH
Confidence            985  78888877644311000                  04578999999998532            45688999999


Q ss_pred             ccCCeEEEEe-cCCCCcHHHHHHHHHh
Q 047371          173 AKPGAVVGIS-GILSEQLPRIINRYSE  198 (222)
Q Consensus       173 LkpgG~l~~~-~~~~~~~~~~~~~~~~  198 (222)
                      |||||.++++ |...-+..++.+.+.+
T Consensus       251 LkpGG~Lv~~scs~~~~~~~f~~~v~~  277 (318)
T d1wxxa2         251 LKEGGILATASCSHHMTEPLFYAMVAE  277 (318)
T ss_dssp             EEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCEEEEEeCCcccCHHHHHHHHHH
Confidence            9999998875 4445555566655544

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=7.6e-16  Score=123.10  Aligned_cols=107  Identities=17%  Similarity=0.176  Sum_probs=82.9

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM  125 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (222)
                      ..+...+....+++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++..    .    .+...+.+.+..  
T Consensus        30 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~l~~a~~~~~----~----~~~~~~~~~l~~--   98 (246)
T d2avna1          30 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV----K----NVVEAKAEDLPF--   98 (246)
T ss_dssp             HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC----S----CEEECCTTSCCS--
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCchhcccccccc-eEEEEeecccccccccccccc----c----cccccccccccc--
Confidence            33445555667788999999999999999999886 589999999999999987632    1    144455554432  


Q ss_pred             ccccccchhccccccccCCCCCCCeeEEEec-ccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          126 NERVDGVVEYLSSHEIRGISETEEYDVVIAN-ILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~-~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                          ++++||+|++. ..+++   ...+++++.++|||||+++++.
T Consensus        99 --------------------~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1          99 --------------------PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             --------------------CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------------------ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence                                67899999974 55554   5678999999999999999864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.64  E-value=1.4e-15  Score=123.60  Aligned_cols=133  Identities=17%  Similarity=0.073  Sum_probs=97.9

Q ss_pred             HHHHHhhh-cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           49 LLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        49 ~~~l~~~~-~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ..+++.+. .++.+|||+|||+|.++..++.....+|+++|+++.+++.|+++....    .++++...+...+..    
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~d~~~~~~----  154 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATL----  154 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCC----
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc----ccceeEEcccccccc----
Confidence            44444442 356799999999999999877654578999999999999999876432    267788887766543    


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCC---------------C
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILS---------------E  187 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~---------------~  187 (222)
                                        ++++||+|++..+++++     ..+++++.+.|||||++++.+...               .
T Consensus       155 ------------------~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~r  216 (254)
T d1xtpa_         155 ------------------PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTR  216 (254)
T ss_dssp             ------------------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEB
T ss_pred             ------------------CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeC
Confidence                              57789999999998875     357999999999999999953321               1


Q ss_pred             cHHHHHHHHHhh-hhcceecc
Q 047371          188 QLPRIINRYSEF-LEDILVSE  207 (222)
Q Consensus       188 ~~~~~~~~~~~~-~~~~~~~~  207 (222)
                      ....+.+.+.+. |..++...
T Consensus       217 s~~~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         217 SDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEE
T ss_pred             CHHHHHHHHHHcCCEEEEEEe
Confidence            234566666554 65555443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=1.7e-15  Score=123.48  Aligned_cols=137  Identities=17%  Similarity=0.162  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcC-CCCCceeEEecCCc
Q 047371           44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNN-IGPKKIKLHLVPDR  119 (222)
Q Consensus        44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~v~~~~~~~~  119 (222)
                      ++.-+..++... ++||++|||+|||+|.++..+++.  +.++|+++|+++.+++.|++++.... ...+++.+...|..
T Consensus        81 ypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~  160 (264)
T d1i9ga_          81 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA  160 (264)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred             chHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccc
Confidence            344444444444 789999999999999999999975  56799999999999999999987532 22258888887765


Q ss_pred             ccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371          120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (222)
                      ....                      +++.||.|+++.+-.  ...+.++.+.|||||.+++.....++..++.+.+...
T Consensus       161 ~~~~----------------------~~~~fDaV~ldlp~P--~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~  216 (264)
T d1i9ga_         161 DSEL----------------------PDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAK  216 (264)
T ss_dssp             GCCC----------------------CTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             cccc----------------------cCCCcceEEEecCCH--HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHc
Confidence            4322                      678899999876543  5789999999999999999877778888888888633


Q ss_pred             --hhcce
Q 047371          200 --LEDIL  204 (222)
Q Consensus       200 --~~~~~  204 (222)
                        |..++
T Consensus       217 ~~f~~i~  223 (264)
T d1i9ga_         217 QCWTEPR  223 (264)
T ss_dssp             SSBCCCE
T ss_pred             CCeecce
Confidence              54433

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=3.1e-15  Score=122.32  Aligned_cols=136  Identities=15%  Similarity=0.161  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      +++....++... ++||++|||+|||+|.++..+++.  +.++|+++|+++.+++.|++++...++. +++.+...|...
T Consensus        88 ypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~-~~v~~~~~d~~~  166 (266)
T d1o54a_          88 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISE  166 (266)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGG
T ss_pred             chHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc-cCcEEEeccccc
Confidence            334444444434 789999999999999999999975  4579999999999999999999988875 477776665422


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-  199 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-  199 (222)
                      .          .             +...+|.|+.+.+-  ...+++++.++|||||.+++.....++..++.+.+.+. 
T Consensus       167 ~----------~-------------~~~~~D~V~~d~p~--p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~g  221 (266)
T d1o54a_         167 G----------F-------------DEKDVDALFLDVPD--PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELP  221 (266)
T ss_dssp             C----------C-------------SCCSEEEEEECCSC--GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSS
T ss_pred             c----------c-------------cccceeeeEecCCC--HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCC
Confidence            1          1             56679999987643  46789999999999999999877778888888888764 


Q ss_pred             hhccee
Q 047371          200 LEDILV  205 (222)
Q Consensus       200 ~~~~~~  205 (222)
                      |..+++
T Consensus       222 F~~i~~  227 (266)
T d1o54a_         222 FIRIEV  227 (266)
T ss_dssp             EEEEEE
T ss_pred             ceeEEE
Confidence            654443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.60  E-value=1.3e-14  Score=120.53  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=118.2

Q ss_pred             CcceeEEeCCCcccccCCcchhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHH
Q 047371           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQN  100 (222)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~  100 (222)
                      ++...+.++++....+|.++..+....++...+   .++.+|||++||+|.+++.++..+. +|+++|.|+.+++.|++|
T Consensus        95 e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N  173 (309)
T d2igta1          95 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKEN  173 (309)
T ss_dssp             ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred             EeEEEEEEeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHh
Confidence            346778888888888999988888888777654   3588999999999999999988774 899999999999999999


Q ss_pred             HHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------HHHHHH
Q 047371          101 AALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------LPQLAD  167 (222)
Q Consensus       101 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------~~~~l~  167 (222)
                      +..+++...++++...|+..+..       ..           ....++||+|+++||...             +..+++
T Consensus       174 ~~ln~~~~~~~~~i~~D~~~~l~-------~~-----------~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~  235 (309)
T d2igta1         174 QVLAGLEQAPIRWICEDAMKFIQ-------RE-----------ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD  235 (309)
T ss_dssp             HHHHTCTTSCEEEECSCHHHHHH-------HH-----------HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred             hhhhcccCCcEEEEeCCHHHhHH-------HH-----------hhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHH
Confidence            99999876678888887754321       00           003568999999998421             345678


Q ss_pred             HHHHcccCCeEEEEe--cCCCCcHHHHHHHHHhh
Q 047371          168 HIVSYAKPGAVVGIS--GILSEQLPRIINRYSEF  199 (222)
Q Consensus       168 ~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~~  199 (222)
                      .+.++|+|||.+++.  +....+...+.+.+.+.
T Consensus       236 ~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~  269 (309)
T d2igta1         236 ICREILSPKALGLVLTAYSIRASFYSMHELMRET  269 (309)
T ss_dssp             HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            889999999865543  23344555555555543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.60  E-value=2.5e-15  Score=115.91  Aligned_cols=113  Identities=12%  Similarity=0.002  Sum_probs=82.2

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC----------CceeEEec
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP----------KKIKLHLV  116 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----------~~v~~~~~  116 (222)
                      +.+.+..+ ++||.+|||+|||+|..+..+++.| .+|+|+|+|+.+++.|++++...+...          ..+.+...
T Consensus         9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (201)
T d1pjza_           9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   87 (201)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence            33445445 6789999999999999999999987 589999999999999999875433210          12233333


Q ss_pred             CCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEe
Q 047371          117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +...+..                     .....||+|++...++++     ..+++.+.+.|||||.+++.
T Consensus        88 d~~~l~~---------------------~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          88 DFFALTA---------------------RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             CCSSSTH---------------------HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             ccccccc---------------------ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence            3322210                     024579999998777663     45799999999999998773

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=4.2e-14  Score=115.56  Aligned_cols=168  Identities=18%  Similarity=0.257  Sum_probs=114.4

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN  104 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~  104 (222)
                      ...|.++|+.--  ...+|..++..++... ..+..+++|+|||+|.++..+++.+..+|+++|+|+.+++.|++|+..+
T Consensus        79 ~~~f~v~~~vlI--PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~  156 (271)
T d1nv8a_          79 GLSFLVEEGVFV--PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH  156 (271)
T ss_dssp             TEEEECCTTSCC--CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             eeEEEEecCccC--chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHc
Confidence            366788887542  2333444444333322 2245689999999999999988888889999999999999999999999


Q ss_pred             CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------
Q 047371          105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------  161 (222)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------  161 (222)
                      ++. .++.+...+......                     ...++||+|++|||+-.                       
T Consensus       157 ~~~-~~~~i~~~~~~~~~~---------------------~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dG  214 (271)
T d1nv8a_         157 GVS-DRFFVRKGEFLEPFK---------------------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDG  214 (271)
T ss_dssp             TCT-TSEEEEESSTTGGGG---------------------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTS
T ss_pred             CCC-ceeEEeecccccccc---------------------cccCcccEEEEcccccCcccccceeeeeccccccccccch
Confidence            886 366666665533210                     03468999999999632                       


Q ss_pred             HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhcceecccCCceEeecccCC
Q 047371          162 LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKFS  220 (222)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~~  220 (222)
                      +.-+-+-+.++|+|||.+++. +...+..++.+.+.+. . ....-.+..+.+..+|+.
T Consensus       215 l~~~r~i~~~~L~~~G~l~~E-ig~~Q~~~v~~l~~~~-g-~~kDl~g~~R~~~~~k~~  270 (271)
T d1nv8a_         215 LDFYREFFGRYDTSGKIVLME-IGEDQVEELKKIVSDT-V-FLKDSAGKYRFLLLNRRS  270 (271)
T ss_dssp             CHHHHHHHHHCCCTTCEEEEE-CCTTCHHHHTTTSTTC-E-EEECTTSSEEEEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEEE-ECHHHHHHHHHHHHhC-C-EEeccCCCcEEEEEEEcC
Confidence            111223356789999998885 5667777776655543 1 122335677888887764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=5.2e-15  Score=117.19  Aligned_cols=110  Identities=18%  Similarity=0.273  Sum_probs=87.0

Q ss_pred             HHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371           46 KLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT  122 (222)
Q Consensus        46 ~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~  122 (222)
                      ..+..++..+ +++|++|||+|||+|..+..+++.  +..+|+++|+++.+++.|++++...++.  ++.+...|.....
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~--n~~~~~~d~~~~~  139 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE--NVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCC
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc--ccccccCchHHcc
Confidence            4444455444 789999999999999999999875  3578999999999999999999988875  7777777654321


Q ss_pred             cccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                            ...++||+|+++..++++.   +.+.+.|||||.+++.
T Consensus       140 ----------------------~~~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         140 ----------------------PEFSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             ----------------------GGGCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             ----------------------ccccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence                                  1466899999998877653   4567789999999883

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.58  E-value=2.5e-14  Score=112.84  Aligned_cols=104  Identities=17%  Similarity=0.163  Sum_probs=81.2

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++||++|||+|||+|..+..+++. +.++|+|+|+++.+++.|++++...+    ++.+...+......     ...   
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i~~d~~~~~~-----~~~---  121 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDASKPWK-----YSG---  121 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCTTCGGG-----TTT---
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC----CceEEEeeccCccc-----ccc---
Confidence            689999999999999999999975 66799999999999999999887653    67788777655421     000   


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                 ....+|+++.+.+... ...++.++.+.|||||++++.
T Consensus       122 -----------~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         122 -----------IVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             -----------TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------ccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEE
Confidence                       2345788877654333 456799999999999999884

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.58  E-value=1.1e-14  Score=119.74  Aligned_cols=102  Identities=18%  Similarity=0.288  Sum_probs=84.9

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++....+.   ++++...|...+.           
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~---~~~f~~~d~~~~~-----------   90 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIE-----------   90 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS---EEEEEESCTTTCC-----------
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc---ccccccccccccc-----------
Confidence            456789999999999999998875 3 36899999999999999999877664   6788888776553           


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                                  ..++||+|+++..+++   ...+++++.+.|||||.+++.+
T Consensus        91 ------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          91 ------------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             ------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ------------ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence                        2457999999998877   4568999999999999998753

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.57  E-value=5.9e-15  Score=110.85  Aligned_cols=104  Identities=17%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +|.+|||+|||+|.+++.++..+..+|+++|.++.+++.+++++..+++. .++++...|...+..        .     
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~-~~~~ii~~D~~~~l~--------~-----   79 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAERAID--------C-----   79 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHHHHH--------H-----
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc-cchhhhccccccccc--------c-----
Confidence            58999999999999999998888889999999999999999999988876 478888887654310        0     


Q ss_pred             cccccCCCCCCCeeEEEecccccc--HHHHHHHHH--HcccCCeEEEEec
Q 047371          138 SHEIRGISETEEYDVVIANILLNP--LPQLADHIV--SYAKPGAVVGISG  183 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~--~~LkpgG~l~~~~  183 (222)
                              ..++||+|+++||+..  ....++.+.  ++|+|+|.+++.+
T Consensus        80 --------~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          80 --------LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             --------BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             --------cccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence                    4678999999999764  344555554  5799999999853

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=9.8e-15  Score=119.35  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=87.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ..++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++.       .++.+...+...+++           
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-------~~~~~~~~d~~~l~~-----------  143 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPF-----------  143 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSB-----------
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------ccccceeeehhhccC-----------
Confidence            346789999999999999999876 4578999999999999998753       267788888877654           


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                                 ++++||+|++....++    ++++.|+|||||+++++........++.+.+
T Consensus       144 -----------~~~sfD~v~~~~~~~~----~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~  190 (268)
T d1p91a_         144 -----------SDTSMDAIIRIYAPCK----AEELARVVKPGGWVITATPGPRHLMELKGLI  190 (268)
T ss_dssp             -----------CTTCEEEEEEESCCCC----HHHHHHHEEEEEEEEEEEECTTTTHHHHTTT
T ss_pred             -----------CCCCEEEEeecCCHHH----HHHHHHHhCCCcEEEEEeeCCcchHHHHHHh
Confidence                       6889999999776665    4678999999999999876666666655443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=2.2e-14  Score=112.75  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++..|||+|||+|..+..+|+. +..+++|+|+++.++..|.+++...++.  |+.+..+|+..+.              
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~--Nv~~~~~Da~~l~--------------   92 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ--NVKLLNIDADTLT--------------   92 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS--SEEEECCCGGGHH--------------
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc--Cchhcccchhhhh--------------
Confidence            3557999999999999998875 6789999999999999999999999986  8999998875542              


Q ss_pred             ccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                            ...+++.+|.|+++.+..+           ...+++.+++.|||||.+++.+-...-.+.+.+.+..
T Consensus        93 ------~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~  159 (204)
T d2fcaa1          93 ------DVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE  159 (204)
T ss_dssp             ------HHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ------cccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHH
Confidence                  0116788999998765543           1468999999999999999864333333344444443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.3e-15  Score=118.80  Aligned_cols=162  Identities=11%  Similarity=0.035  Sum_probs=97.7

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE---E---ecCCcccccccccccc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL---H---LVPDRTFTASMNERVD  130 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~---~---~~~~~~~~~~~~~~~~  130 (222)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++++............   .   ........ .......
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWE-EKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHH-HHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHH-HHHHHHh
Confidence            356799999999999888777666678999999999999999998765433100000   0   00000000 0000000


Q ss_pred             cchh-----ccccccccCCCCCCCeeEEEeccccccH-------HHHHHHHHHcccCCeEEEEecCCC------------
Q 047371          131 GVVE-----YLSSHEIRGISETEEYDVVIANILLNPL-------PQLADHIVSYAKPGAVVGISGILS------------  186 (222)
Q Consensus       131 ~~~~-----~~~~~~~~~~~~~~~~D~v~~~~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~------------  186 (222)
                      ..+.     .-.........+.++||+|++...++++       ..+++++.++|||||++++.+...            
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~  208 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS  208 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence            0000     0000000111256789999998887664       357899999999999999965432            


Q ss_pred             ---CcHHHHHHHHHhh-hhcceec-----------ccCCceEeecccC
Q 047371          187 ---EQLPRIINRYSEF-LEDILVS-----------EKDDWRCVSGTKF  219 (222)
Q Consensus       187 ---~~~~~~~~~~~~~-~~~~~~~-----------~~~~w~~~~~~k~  219 (222)
                         -+..++.+.++.. |...+..           ....+..+.++|+
T Consensus       209 ~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk  256 (257)
T d2a14a1         209 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK  256 (257)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred             ccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence               3578888888775 6544431           1344566666654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.55  E-value=1.7e-14  Score=114.64  Aligned_cols=95  Identities=14%  Similarity=0.084  Sum_probs=78.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++..      .++.+...+.+.+.               
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~------~~~~~~~~~~~~~~---------------   77 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLK------DGITYIHSRFEDAQ---------------   77 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSC------SCEEEEESCGGGCC---------------
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhcccc------cccccccccccccc---------------
Confidence            46789999999999999998776 579999999999999987642      25777777665442               


Q ss_pred             cccccCCCCCCCeeEEEecccccc---HHHHHHHHH-HcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIV-SYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~-~~LkpgG~l~~~  182 (222)
                              .+++||+|++..+++|   ...++.++. ++|||||.+++.
T Consensus        78 --------~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          78 --------LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             --------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --------cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence                    4678999999998887   455788887 789999999985

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.7e-14  Score=112.41  Aligned_cols=123  Identities=15%  Similarity=0.037  Sum_probs=90.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCC---------------CCCceeEEecCCcc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI---------------GPKKIKLHLVPDRT  120 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~~v~~~~~~~~~  120 (222)
                      .+++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|++.....+.               ...++++...|...
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            35788999999999999999999975 899999999999999887543211               01245555555433


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC----------
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL----------  185 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~----------  185 (222)
                      +..                     ...+.||+|+....+++     ...+++.+.++|||||.+++.++.          
T Consensus       122 l~~---------------------~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp  180 (229)
T d2bzga1         122 LPR---------------------TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPP  180 (229)
T ss_dssp             GGG---------------------SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSS
T ss_pred             ccc---------------------cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCC
Confidence            321                     15678999998776665     456899999999999998775332          


Q ss_pred             -CCcHHHHHHHHHhhh
Q 047371          186 -SEQLPRIINRYSEFL  200 (222)
Q Consensus       186 -~~~~~~~~~~~~~~~  200 (222)
                       .-...++.+.+...+
T Consensus       181 ~~~~~~el~~lf~~~~  196 (229)
T d2bzga1         181 FYVPHAEIERLFGKIC  196 (229)
T ss_dssp             CCCCHHHHHHHHTTTE
T ss_pred             CCCCHHHHHHHhcCCC
Confidence             134567777777654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=116.13  Aligned_cols=112  Identities=21%  Similarity=0.314  Sum_probs=85.9

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCC---CCceeEEecCCcc
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIG---PKKIKLHLVPDRT  120 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~~~~~  120 (222)
                      ..++++|...+++|++|||+|||+|..+..+++.  +..+|+++|+++.+++.|++++...++.   ..++.+..+|...
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            3445555445689999999999999999988875  4579999999999999999998765543   1356777766543


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ..                      .+.++||+|+++...+..   .+.+.+.|||||++++.
T Consensus       144 ~~----------------------~~~~~fD~I~~~~~~~~i---p~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         144 GY----------------------AEEAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILP  180 (224)
T ss_dssp             CC----------------------GGGCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             cc----------------------chhhhhhhhhhhcchhhc---CHHHHhhcCCCcEEEEE
Confidence            21                      156789999998877654   34577899999999984

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=4.4e-14  Score=112.74  Aligned_cols=152  Identities=18%  Similarity=0.182  Sum_probs=101.0

Q ss_pred             hhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371           44 TTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP  117 (222)
Q Consensus        44 ~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~  117 (222)
                      .+++...++..+    ++||++|||+|||+|.++.++++.  +.++|+|+|+++.+++.++.++...+    ++.....+
T Consensus        55 rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~----~~~~i~~d  130 (227)
T d1g8aa_          55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR----NIVPILGD  130 (227)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT----TEEEEECC
T ss_pred             ccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC----CceEEEEE
Confidence            344444444332    679999999999999999999986  46899999999999999998875443    45555555


Q ss_pred             CcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEEecCC-----CCcH--
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGISGIL-----SEQL--  189 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~--  189 (222)
                      ......      ...             ....+|+++++.+... ...++.++.+.|||||+++++...     ....  
T Consensus       131 ~~~~~~------~~~-------------~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~  191 (227)
T d1g8aa_         131 ATKPEE------YRA-------------LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQ  191 (227)
T ss_dssp             TTCGGG------GTT-------------TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHH
T ss_pred             CCCccc------ccc-------------cccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHH
Confidence            533210      000             3467999998776544 455899999999999999885221     1111  


Q ss_pred             --HHHHHHHHhhhhcceecccCCc----eEeeccc
Q 047371          190 --PRIINRYSEFLEDILVSEKDDW----RCVSGTK  218 (222)
Q Consensus       190 --~~~~~~~~~~~~~~~~~~~~~w----~~~~~~k  218 (222)
                        .+..+.....|..++......|    ..+.++|
T Consensus       192 v~~~v~~l~~~gf~iie~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         192 VFREVERELSEYFEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             HHHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred             HHHHHHHHHHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence              2233333445777766554444    4444444

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.53  E-value=5.1e-14  Score=112.64  Aligned_cols=131  Identities=11%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++||++|||+|||+|..+.+++.. +...|+|+|+|+.+++.++.++...+    ++.....+......        .  
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~----ni~~i~~d~~~~~~--------~--  137 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE----NIIPILGDANKPQE--------Y--  137 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT----TEEEEECCTTCGGG--------G--
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc----ccceEEEeeccCcc--------c--
Confidence            678999999999999999999986 56799999999999999988765433    56666666544321        0  


Q ss_pred             ccccccccCCCCCCCeeE--EEeccccc-cHHHHHHHHHHcccCCeEEEEecCC---------CCcHHHHHHHHHhh-hh
Q 047371          135 YLSSHEIRGISETEEYDV--VIANILLN-PLPQLADHIVSYAKPGAVVGISGIL---------SEQLPRIINRYSEF-LE  201 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~--v~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~~~~~~~-~~  201 (222)
                                 ....+|+  +++..... ....++.++.+.|||||+++++...         .....+..+.++.. |+
T Consensus       138 -----------~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~  206 (230)
T d1g8sa_         138 -----------ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFK  206 (230)
T ss_dssp             -----------TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEE
T ss_pred             -----------ccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCE
Confidence                       2333444  44433221 2455799999999999998885211         11223444555543 77


Q ss_pred             cceecccCCc
Q 047371          202 DILVSEKDDW  211 (222)
Q Consensus       202 ~~~~~~~~~w  211 (222)
                      .++......|
T Consensus       207 ive~idL~py  216 (230)
T d1g8sa_         207 IVDEVDIEPF  216 (230)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEecCCCC
Confidence            7776555544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.4e-13  Score=116.64  Aligned_cols=157  Identities=14%  Similarity=0.087  Sum_probs=121.7

Q ss_pred             ceeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ...+.++|...|. .+......+.+.+.+.+  .++++|||+.||+|.+++.+++. ..+|+|+|.++.+++.|++|+..
T Consensus       179 g~~~~i~p~sFfQ-~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~  256 (358)
T d1uwva2         179 GLRLTFSPRDFIQ-VNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARL  256 (358)
T ss_dssp             TEEEECCSSSCCC-SBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEEECCchhhc-cchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHh
Confidence            4667888876664 45455555555555553  36789999999999999999876 47999999999999999999999


Q ss_pred             cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      +++.  ++.+...+.......                  ......++|+|+.+||.....+.++.+.+ ++|.-.+|++|
T Consensus       257 n~i~--n~~~~~~~~~~~~~~------------------~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSC  315 (358)
T d1uwva2         257 NGLQ--NVTFYHENLEEDVTK------------------QPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSC  315 (358)
T ss_dssp             TTCC--SEEEEECCTTSCCSS------------------SGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEES
T ss_pred             cccc--cceeeecchhhhhhh------------------hhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeC
Confidence            9986  888988876543210                  00134679999999999888888887776 48888999999


Q ss_pred             CCCCcHHHHHHHHHhhhhccee
Q 047371          184 ILSEQLPRIINRYSEFLEDILV  205 (222)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~  205 (222)
                      .+....+++....+..|....+
T Consensus       316 np~TlaRDl~~l~~~gy~l~~i  337 (358)
T d1uwva2         316 NPATLARDSEALLKAGYTIARL  337 (358)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCeEeEE
Confidence            9999999998887776644443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-14  Score=113.90  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=79.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..+|.+|||+|||+|..+..+++.+..+++|+|+|+.+++.|+++....+.   ++.....+.....       ..+   
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~-------~~~---  117 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH---KVIPLKGLWEDVA-------PTL---  117 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS---EEEEEESCHHHHG-------GGS---
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc---ccccccccccccc-------ccc---
Confidence            567899999999999999999887667899999999999999998766542   4555555543221       111   


Q ss_pred             cccccccCCCCCCCeeEEEecccc-----cc---HHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIANILL-----NP---LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~-----~~---~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                +.++||.|+.+...     .+   ...+++++.++|||||++++.
T Consensus       118 ----------~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         118 ----------PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             ----------CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ----------ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence                      67889999865432     22   345889999999999999873

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=3.4e-14  Score=108.69  Aligned_cols=121  Identities=19%  Similarity=0.238  Sum_probs=86.2

Q ss_pred             CcchhHHHHHH----HHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec
Q 047371           41 EHATTKLCLLL----LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV  116 (222)
Q Consensus        41 ~~~~~~~~~~~----l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~  116 (222)
                      -+|++..+.+.    +.....+|.+|||+|||+|.+++.++..+ ++++++|.++.+++.+++|++.+++. .++  ...
T Consensus        20 ~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~g-a~vv~vD~~~~a~~~~~~N~~~~~~~-~~v--~~~   95 (171)
T d1ws6a1          20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG-WEAVLVEKDPEAVRLLKENVRRTGLG-ARV--VAL   95 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT-CEEEEECCCHHHHHHHHHHHHHHTCC-CEE--ECS
T ss_pred             CCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhcc-chhhhcccCHHHHhhhhHHHHhhccc-cce--eee
Confidence            46666666654    44445678999999999999999988887 57999999999999999999988886 233  333


Q ss_pred             CCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-HHHHHHHH--HHcccCCeEEEEec
Q 047371          117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-LPQLADHI--VSYAKPGAVVGISG  183 (222)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~--~~~LkpgG~l~~~~  183 (222)
                      +.+.+...     ...             ...+||+|+++||+.. ..+.+..+  ..+|+|||++++..
T Consensus        96 ~~d~~~~~-----~~~-------------~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1          96 PVEVFLPE-----AKA-------------QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             CHHHHHHH-----HHH-------------TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             ehhccccc-----ccc-------------cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence            33322100     001             4568999999999763 23333333  35799999998853

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.8e-14  Score=118.69  Aligned_cols=147  Identities=17%  Similarity=0.182  Sum_probs=103.8

Q ss_pred             hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCC---------CCCcee
Q 047371           45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNI---------GPKKIK  112 (222)
Q Consensus        45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~---------~~~~v~  112 (222)
                      +.-+..++..+ ++||++|||+|||+|.++..+++.  +.++|+++|+++.+++.|++++...+.         ..+++.
T Consensus        84 pkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~  163 (324)
T d2b25a1          84 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  163 (324)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             cccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence            33344444434 789999999999999999999985  567999999999999999999875321         124778


Q ss_pred             EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                      +...|......       ++             +...||.|+.+.|-.  ...+.++.++|||||.+++....-++..+.
T Consensus       164 ~~~~di~~~~~-------~~-------------~~~~fD~V~LD~p~P--~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~  221 (324)
T d2b25a1         164 FIHKDISGATE-------DI-------------KSLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVYVVNITQVIEL  221 (324)
T ss_dssp             EEESCTTCCC---------------------------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred             EEecchhhccc-------cc-------------CCCCcceEeecCcCH--HHHHHHHHHhccCCCEEEEEeCCHHHHHHH
Confidence            88777654311       11             456799999876543  457899999999999999876667788888


Q ss_pred             HHHHHhh---hhcceec--ccCCceE
Q 047371          193 INRYSEF---LEDILVS--EKDDWRC  213 (222)
Q Consensus       193 ~~~~~~~---~~~~~~~--~~~~w~~  213 (222)
                      .+.++..   |..+++.  -...|..
T Consensus       222 ~~~l~~~~~~f~~i~~~E~~~R~w~v  247 (324)
T d2b25a1         222 LDGIRTCELALSCEKISEVIVRDWLV  247 (324)
T ss_dssp             HHHHHHHTCCEEEEEEECCCCCCEEE
T ss_pred             HHHHHHcCCCceeeEEEEEEeeeeEE
Confidence            8888642   4444432  2356653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=3.4e-14  Score=111.19  Aligned_cols=91  Identities=11%  Similarity=0.129  Sum_probs=74.9

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .++.+|||+|||+|.++..+.     +++|+|+|+.+++.|+++         ++.+...+...+..             
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~---------~~~~~~~d~~~l~~-------------   87 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR---------GVFVLKGTAENLPL-------------   87 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT---------TCEEEECBTTBCCS-------------
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc---------cccccccccccccc-------------
Confidence            456789999999999887662     468999999999999863         45678887766543             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                               ++++||+|+++..+++   ...+++++.++|+|||.+++..
T Consensus        88 ---------~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          88 ---------KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             ---------CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------ccccccccccccccccccccccchhhhhhcCCCCceEEEEe
Confidence                     6789999999998887   4568999999999999999853

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7e-14  Score=108.03  Aligned_cols=119  Identities=19%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             CcchhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371           41 EHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP  117 (222)
Q Consensus        41 ~~~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~  117 (222)
                      -+|++..+.+.+-..+   -.+.+|||++||+|.+++.++..|+.+|+.+|.++.+++.+++|+...+..  +..+...|
T Consensus        23 ~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~--~~~ii~~d  100 (183)
T d2fpoa1          23 LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG--NARVVNSN  100 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC--SEEEECSC
T ss_pred             cCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc--ceeeeeec
Confidence            5677777766664442   258899999999999999999999899999999999999999999887764  67777766


Q ss_pred             CcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHH--cccCCeEEEEe
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVS--YAKPGAVVGIS  182 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~--~LkpgG~l~~~  182 (222)
                      +..+..                     ....+||+|+++||+..  ....+..+.+  +|+++|.+++.
T Consensus       101 ~~~~l~---------------------~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         101 AMSFLA---------------------QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             HHHHHS---------------------SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccccc---------------------ccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            543310                     04668999999999864  4566666654  69999999985

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.51  E-value=7.6e-14  Score=107.75  Aligned_cols=124  Identities=18%  Similarity=0.210  Sum_probs=97.0

Q ss_pred             CcchhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371           41 EHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP  117 (222)
Q Consensus        41 ~~~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~  117 (222)
                      -.|++..+.+.+-..+   -+|.+|||++||+|.+++.++..|+.+|+++|.++.+++.+++|+...+.. .++++...|
T Consensus        21 ~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~-~~~~i~~~D   99 (182)
T d2fhpa1          21 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKMD   99 (182)
T ss_dssp             SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESC
T ss_pred             cCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc-ccccccccc
Confidence            5777777777765553   358999999999999999999999899999999999999999999887765 478888887


Q ss_pred             CcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHH--cccCCeEEEEec
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVS--YAKPGAVVGISG  183 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~--~LkpgG~l~~~~  183 (222)
                      +..+..       .+           .....+||+|+++||+..  +...++.+.+  +|+++|.+++..
T Consensus       100 ~~~~l~-------~~-----------~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         100 ANRALE-------QF-----------YEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             HHHHHH-------HH-----------HHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             chhhhh-------hh-----------cccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            654311       00           003558999999999853  5667777654  699999998853

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.4e-13  Score=115.45  Aligned_cols=100  Identities=25%  Similarity=0.325  Sum_probs=84.3

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      .+|++|||+|||+|.+++.+++.++.+|+|+|.++ ++..|++....++.. .++.+...+...+..             
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~-~~i~~i~~~~~~l~~-------------  101 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS-DKITLLRGKLEDVHL-------------  101 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCC-------------
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCcc-ccceEEEeehhhccC-------------
Confidence            47999999999999999999999888999999986 678899888888876 588898888766533             


Q ss_pred             ccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVG  180 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~  180 (222)
                               +.++||+|++....+.      ...++....++|||||.++
T Consensus       102 ---------~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         102 ---------PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ---------SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence                     6788999999765432      4567888899999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.5e-13  Score=114.73  Aligned_cols=102  Identities=19%  Similarity=0.244  Sum_probs=84.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +.+|++|||+|||+|.+++.+++.|+.+|+|+|.++. ...+++++..+++. +++.+...+...+..            
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~-~~v~~~~~~~~~~~~------------   96 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLD-HVVTIIKGKVEEVEL------------   96 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCT-TTEEEEESCTTTCCC------------
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCc-cccceEeccHHHccc------------
Confidence            3479999999999999999999998889999999975 57777777788876 579999888876643            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEE
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~  181 (222)
                                +.++||+|++....+.      +..++..+.++|||||.++-
T Consensus        97 ----------~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          97 ----------PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             ----------SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ----------ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence                      5678999998765432      56789999999999999873

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.49  E-value=3.4e-13  Score=105.86  Aligned_cols=104  Identities=18%  Similarity=0.205  Sum_probs=86.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ....|||+|||+|.++..+|+. +..+++|+|+++.++..|.+.+...+++  |+.+...++..+.              
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~--Ni~~~~~da~~l~--------------   94 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP--NIKLLWVDGSDLT--------------   94 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS--SEEEEECCSSCGG--------------
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc--cceeeecCHHHHh--------------
Confidence            3457999999999999998875 6789999999999999999999988886  8999999886542              


Q ss_pred             ccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEec
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                            +..+..++|.|+++.|-.+           ...+++.+.+.|||||.+++.+
T Consensus        95 ------~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1          95 ------DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             ------GTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ------hhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence                  1126778999998766432           2578999999999999998854

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=1.9e-13  Score=107.10  Aligned_cols=108  Identities=20%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .|++|||+|||+|.+++.++..+..+|+|+|+++.+++.|++|+..++.   +..+...|...                 
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~---~~~~~~~d~~~-----------------  105 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIGDVSE-----------------  105 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEESCGGG-----------------
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC---CceEEECchhh-----------------
Confidence            5789999999999999998888878999999999999999999887765   45666655433                 


Q ss_pred             cccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371          138 SHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILSEQLPRIINRY  196 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (222)
                              ..++||+|++|||+...     ..++..   .+.+++.++..........+..+.+
T Consensus       106 --------~~~~fD~Vi~nPP~~~~~~~~d~~~l~~---~~~~~~~v~~ih~~~~~~~~~i~~~  158 (201)
T d1wy7a1         106 --------FNSRVDIVIMNPPFGSQRKHADRPFLLK---AFEISDVVYSIHLAKPEVRRFIEKF  158 (201)
T ss_dssp             --------CCCCCSEEEECCCCSSSSTTTTHHHHHH---HHHHCSEEEEEEECCHHHHHHHHHH
T ss_pred             --------hCCcCcEEEEcCccccccccccHHHHHH---HHhhcccchhcccchHHHHHHHHHH
Confidence                    35679999999998542     223333   3344556555444444444444443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.2e-13  Score=112.35  Aligned_cols=102  Identities=27%  Similarity=0.277  Sum_probs=82.3

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..++++|||+|||+|.+++.+++.++.+|+|+|.++.+. .+++....++.. .++.+...+...+..            
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~-~~i~~~~~~~~~l~~------------   98 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLE-DTITLIKGKIEEVHL------------   98 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCT-TTEEEEESCTTTSCC------------
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCC-ccceEEEeeHHHhcC------------
Confidence            346899999999999999999999888999999999775 466666666765 588998888776543            


Q ss_pred             cccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEE
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~  181 (222)
                                +.++||+|++....+.      +..++....+.|||||.++-
T Consensus        99 ----------~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          99 ----------PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             ----------SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ----------ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence                      5678999999766543      45677778899999999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.47  E-value=3.6e-13  Score=108.87  Aligned_cols=102  Identities=13%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++++...++. .++.+...|....              
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~rv~~~~~D~~~~--------------  142 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFEP--------------  142 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTSC--------------
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc-cchhhccccchhh--------------
Confidence            45679999999999999988875 5678999998 67999999999888876 5888888875322              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ...+||+|++...+++.     ..+++++++.|||||.+++.+.
T Consensus       143 ----------~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         143 ----------LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             ----------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ----------cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence                      34579999998888763     3579999999999999998543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.1e-13  Score=114.11  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=75.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCc--eeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK--IKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+.....  ..+...+......            
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  122 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK------------  122 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH------------
T ss_pred             CCCEEEEecCCCcHHHHHHHHcC-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc------------
Confidence            57899999999999999999886 58999999999999999988765543111  1222222211100            


Q ss_pred             cccccccCCCCCCCeeEEEec-ccccc----------HHHHHHHHHHcccCCeEEEEe
Q 047371          136 LSSHEIRGISETEEYDVVIAN-ILLNP----------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~-~~~~~----------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             .....++||+|++. ..+.+          ...++++++++|||||.+++.
T Consensus       123 -------~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         123 -------DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             -------HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -------ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence                   01145689999974 33433          345899999999999999985

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-12  Score=105.86  Aligned_cols=124  Identities=16%  Similarity=0.127  Sum_probs=89.0

Q ss_pred             CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ..++||+|||+|.+++.++.. +..+++|+|+++.+++.|++|+..+++. +++.+...+......   .....      
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~-~~~~~~~~~~~~~~~---~~~~~------  131 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLM---DALKE------  131 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSST---TTSTT------
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC-cceeeeeeccHHhhh---hhhhh------
Confidence            358999999999999988764 6689999999999999999999999987 477776654322110   00000      


Q ss_pred             cccccCCCCCCCeeEEEecccccc--------------------------------------HHHHHHHHHHcccCCeEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNP--------------------------------------LPQLADHIVSYAKPGAVV  179 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l  179 (222)
                             ...++||+|+||||+..                                      +..++++...+++..|.+
T Consensus       132 -------~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~  204 (250)
T d2h00a1         132 -------ESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWY  204 (250)
T ss_dssp             -------CCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCE
T ss_pred             -------cccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEE
Confidence                   14568999999999863                                      223456677778888877


Q ss_pred             EEecCCCCcHHHHHHHHHhh
Q 047371          180 GISGILSEQLPRIINRYSEF  199 (222)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~  199 (222)
                      .+.--...+..++.+.+.+.
T Consensus       205 t~~ig~~~~l~~i~~~L~~~  224 (250)
T d2h00a1         205 SCMLGKKCSLAPLKEELRIQ  224 (250)
T ss_dssp             EEEESSTTSHHHHHHHHHHT
T ss_pred             EEEecchhhHHHHHHHHHHc
Confidence            65423456677777777654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.45  E-value=3e-13  Score=107.54  Aligned_cols=104  Identities=22%  Similarity=0.271  Sum_probs=80.8

Q ss_pred             HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ..++..+ ++++++|||+|||+|+++..+++.. .+|+++|+++..++.|+++....    .++.+...|...-      
T Consensus        60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~----~nv~~~~~d~~~g------  128 (224)
T d1vbfa_          60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY----NNIKLILGDGTLG------  128 (224)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC----SSEEEEESCGGGC------
T ss_pred             HHHHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc----cccccccCchhhc------
Confidence            3344433 7899999999999999999999885 78999999999999999876532    3788888775321      


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                      +...++||.|++......+   .+.+.+.|||||++++-
T Consensus       129 ----------------~~~~~pfD~Iiv~~a~~~i---p~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         129 ----------------YEEEKPYDRVVVWATAPTL---LCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             ----------------CGGGCCEEEEEESSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             ----------------chhhhhHHHHHhhcchhhh---hHHHHHhcCCCCEEEEE
Confidence                            1246789999998776654   34567889999999883

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.7e-13  Score=112.31  Aligned_cols=133  Identities=15%  Similarity=0.116  Sum_probs=94.3

Q ss_pred             eCCCcccccCCc--chhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh---
Q 047371           31 LNPGLAFGTGEH--ATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL---  103 (222)
Q Consensus        31 ~~~~~~f~~~~~--~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~---  103 (222)
                      +++...|....+  .....+.++++.. ++++++|||+|||+|.++..+++. +..+++|+|+++.+++.|++....   
T Consensus       121 l~~y~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~  200 (328)
T d1nw3a_         121 LNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRK  200 (328)
T ss_dssp             GGCSCSSSTTCCCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHH
T ss_pred             hccccCCCCCchhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence            344444433222  2445556666655 678999999999999999988764 667899999999999998776542   


Q ss_pred             ----cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCe
Q 047371          104 ----NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGA  177 (222)
Q Consensus       104 ----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG  177 (222)
                          .++...++.+..+|+....+.     +               ....+|+|+++...+.  +...+.++.+.|||||
T Consensus       201 ~~~~~g~~~~~i~~~~gd~~~~~~~-----~---------------~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg  260 (328)
T d1nw3a_         201 WMKWYGKKHAEYTLERGDFLSEEWR-----E---------------RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGG  260 (328)
T ss_dssp             HHHHHTCCCCCEEEEECCTTSHHHH-----H---------------HHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTC
T ss_pred             HhhhccccCCceEEEECcccccccc-----c---------------ccCcceEEEEcceecchHHHHHHHHHHHhCCCCc
Confidence                344445789999988665320     0               0113589998765543  4567899999999999


Q ss_pred             EEEEec
Q 047371          178 VVGISG  183 (222)
Q Consensus       178 ~l~~~~  183 (222)
                      .+++..
T Consensus       261 ~iv~~~  266 (328)
T d1nw3a_         261 RIVSSK  266 (328)
T ss_dssp             EEEESS
T ss_pred             EEEEec
Confidence            999853

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.42  E-value=1.4e-12  Score=100.63  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             CcchhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371           41 EHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP  117 (222)
Q Consensus        41 ~~~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~  117 (222)
                      -.|++..+.+.+-..+   -.+.+|||++||+|.+++.+++.|+.+++.+|.+..+++..++|+...++......+...+
T Consensus        23 ~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d  102 (183)
T d2ifta1          23 LRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  102 (183)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             cCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence            4667777766665443   2688999999999999999999999999999999999999999999887764445555444


Q ss_pred             CcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHH--cccCCeEEEEec
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVS--YAKPGAVVGISG  183 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~--~LkpgG~l~~~~  183 (222)
                      ...+.                   .......+||+|+++||+..  ....++.+..  +|+++|.+++..
T Consensus       103 ~~~~l-------------------~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         103 SLDFL-------------------KQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             HHHHT-------------------TSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccc-------------------cccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            32221                   01113457999999999865  5566776654  799999999853

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.41  E-value=7e-13  Score=104.77  Aligned_cols=107  Identities=20%  Similarity=0.271  Sum_probs=85.3

Q ss_pred             HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE  127 (222)
Q Consensus        49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (222)
                      ..++..+ ++++++|||+|||+|+.+..+++.-..+|+++|.++..++.|++++...++.  ++.+..+|...-      
T Consensus        68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~--nv~~~~gd~~~g------  139 (215)
T d1jg1a_          68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK--NVHVILGDGSKG------  139 (215)
T ss_dssp             HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGC------
T ss_pred             HHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCc--eeEEEECccccC------
Confidence            3334333 7789999999999999999998763367999999999999999999998875  899998876432      


Q ss_pred             ccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                      +...++||.|++........   +.+.+.|||||++++-
T Consensus       140 ----------------~~~~~pfD~Iiv~~a~~~ip---~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         140 ----------------FPPKAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             ----------------CGGGCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             ----------------CcccCcceeEEeecccccCC---HHHHHhcCCCCEEEEE
Confidence                            22578899999988776543   3356789999999873

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.40  E-value=2.6e-12  Score=104.07  Aligned_cols=102  Identities=16%  Similarity=0.043  Sum_probs=82.8

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      .+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++++...++. +++.+...+....              
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~-~ri~~~~~d~~~~--------------  143 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGDFFKP--------------  143 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTSC--------------
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc-ceeeeeeeecccc--------------
Confidence            45678999999999999998875 6679999998 78999999999888876 5788877765321              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ....+|++++...+|+.     ..+++++++.|||||.+++.+.
T Consensus       144 ----------~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         144 ----------LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             ----------CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ----------ccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence                      23469999998888763     3579999999999999998654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.37  E-value=1.4e-12  Score=101.59  Aligned_cols=72  Identities=31%  Similarity=0.528  Sum_probs=60.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      .|++|||+|||+|.+++.++..+..+|+|+|+++.+++.|++|+.       ++.+...|...+                
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-------~~~~~~~D~~~l----------------  104 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEI----------------  104 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGC----------------
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-------cccEEEEehhhc----------------
Confidence            589999999999999998888888899999999999999998753       566777766433                


Q ss_pred             cccccCCCCCCCeeEEEecccccc
Q 047371          138 SHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                               .++||+|++|||+..
T Consensus       105 ---------~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_         105 ---------SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             ---------CCCEEEEEECCCC--
T ss_pred             ---------CCcceEEEeCcccch
Confidence                     467999999999853

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.7e-12  Score=103.28  Aligned_cols=108  Identities=14%  Similarity=0.118  Sum_probs=75.8

Q ss_pred             CcEEEEccCCCHHHHHHHHh-----C--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC--cccccccccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKF-----G--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD--RTFTASMNERVD  130 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~-----~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~  130 (222)
                      .+|||+|||+|.++..++..     +  ..+++|+|+|+.+++.|++++...... .++.+.....  +.+..       
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------  113 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL-ENVKFAWHKETSSEYQS-------  113 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC-TTEEEEEECSCHHHHHH-------
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc-ccccccchhhhhhhhcc-------
Confidence            37999999999988876542     2  246899999999999999987643321 2454443332  11100       


Q ss_pred             cchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               ....-.+.++||+|++...+++   ...+++++.++|+|||.+++...
T Consensus       114 ---------~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         114 ---------RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             ---------HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ---------hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence                     0001115789999999888876   45689999999999999988643

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=104.37  Aligned_cols=130  Identities=12%  Similarity=0.089  Sum_probs=85.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCc--e------------------------
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK--I------------------------  111 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~--v------------------------  111 (222)
                      +|.++||+|||+|.++...+.....+|+|+|+|+.+++.+++.+.......+-  .                        
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  133 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence            47899999999998876555444579999999999999999877543321000  0                        


Q ss_pred             --eEEecCCcccccccccccccchhcccccccc-CCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEE
Q 047371          112 --KLHLVPDRTFTASMNERVDGVVEYLSSHEIR-GISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~  181 (222)
                        .....|...-                 +.+. .....++||+|++...+++       +..++++++++|||||++++
T Consensus       134 ~~~~~~~Dv~~~-----------------~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~  196 (263)
T d2g72a1         134 VKRVLPIDVHQP-----------------QPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL  196 (263)
T ss_dssp             EEEEECCCTTSS-----------------STTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhccccccccCC-----------------CccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence              0001111000                 0000 0113567999999887765       35679999999999999998


Q ss_pred             ecCC---------------CCcHHHHHHHHHhh-hhcce
Q 047371          182 SGIL---------------SEQLPRIINRYSEF-LEDIL  204 (222)
Q Consensus       182 ~~~~---------------~~~~~~~~~~~~~~-~~~~~  204 (222)
                      .+..               .-+.+++.+.+++. |+.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~  235 (263)
T d2g72a1         197 IGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRD  235 (263)
T ss_dssp             EEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred             ecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEE
Confidence            4331               23667888888775 65543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=1.9e-12  Score=102.88  Aligned_cols=110  Identities=17%  Similarity=0.323  Sum_probs=81.3

Q ss_pred             HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh----C---CCEEEEEeCChHHHHHHHHHHHhcCCC---CCceeEEecC
Q 047371           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF----G---AAMFVGVDIDPQVIKSAHQNAALNNIG---PKKIKLHLVP  117 (222)
Q Consensus        48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~----~---~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~~  117 (222)
                      +++.|...++++++|||+|||+|+.+..+++.    +   ..+|+++|.++..++.|++++...+..   ..++.+...|
T Consensus        70 ~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d  149 (223)
T d1r18a_          70 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD  149 (223)
T ss_dssp             HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecc
Confidence            34444334678999999999999999888764    1   248999999999999999887543211   1377888777


Q ss_pred             CcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ...-                      +.+.++||.|++........   +.+.+.|||||++++-
T Consensus       150 ~~~~----------------------~~~~~~fD~Iiv~~a~~~~p---~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         150 GRKG----------------------YPPNAPYNAIHVGAAAPDTP---TELINQLASGGRLIVP  189 (223)
T ss_dssp             GGGC----------------------CGGGCSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             cccc----------------------cccccceeeEEEEeechhch---HHHHHhcCCCcEEEEE
Confidence            5432                      22567899999988776543   4567899999999873

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1.4e-11  Score=105.61  Aligned_cols=122  Identities=20%  Similarity=0.212  Sum_probs=83.7

Q ss_pred             chhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC-------CCCCceeE
Q 047371           43 ATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN-------IGPKKIKL  113 (222)
Q Consensus        43 ~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-------~~~~~v~~  113 (222)
                      -....+.++++.. ++++++|||+|||+|.+++.+|.. +.++++|+|+++.+++.|+++....+       .......+
T Consensus       200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            3556677777766 789999999999999999988864 76799999999999999998876422       22112222


Q ss_pred             Ee-cCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEec
Q 047371          114 HL-VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       114 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      .. .+....     +....              ....+|+++++...+.  +...+.++.+.|||||.+++..
T Consensus       280 ~~~~~f~~~-----~~~d~--------------~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         280 SLKKSFVDN-----NRVAE--------------LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             EESSCSTTC-----HHHHH--------------HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eeeechhhc-----ccccc--------------ccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            11 111000     00000              1235789998754432  5667999999999999999854

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=2.1e-11  Score=94.46  Aligned_cols=133  Identities=15%  Similarity=0.243  Sum_probs=95.9

Q ss_pred             HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS  124 (222)
Q Consensus        47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (222)
                      ++.+++..+ .+++..++|++||+|..+..+++. +..+++|+|.++.+++.|++++...+   .++.+...+...+.. 
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~---~r~~~~~~~f~~~~~-   86 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADF-   86 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHH-
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc---ccccchhHHHhhHHH-
Confidence            333444333 467899999999999999988764 67899999999999999999887654   367788776654321 


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                         .....             ..++||-|+.+..+..            ..+.+..+.++|+|||.+++..+...+.+-+
T Consensus        87 ---~~~~~-------------~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~v  150 (192)
T d1m6ya2          87 ---LLKTL-------------GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIV  150 (192)
T ss_dssp             ---HHHHT-------------TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHH
T ss_pred             ---HHHHc-------------CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHH
Confidence               11111             4578999998876532            4567999999999999999876665554445


Q ss_pred             HHHHHhh
Q 047371          193 INRYSEF  199 (222)
Q Consensus       193 ~~~~~~~  199 (222)
                      .+.+...
T Consensus       151 k~~f~~~  157 (192)
T d1m6ya2         151 KETFRNS  157 (192)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhc
Confidence            5554443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=5e-11  Score=93.87  Aligned_cols=124  Identities=11%  Similarity=0.203  Sum_probs=92.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++|||+|||+|..++.+++.  ..++++++|.++.+++.|+.++...++. +++++..++.......+   ....   
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~-~~i~l~~Gd~~e~l~~l---~~~~---  128 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ-DKVTILNGASQDLIPQL---KKKY---  128 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHGGGH---HHHS---
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC-ccceeeeccccccccch---hhcc---
Confidence            5789999999999999999874  3579999999999999999999998987 58999988775432100   0011   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHH--HHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQ--LADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                                ..++||+|+++..-..+..  .+.+..++|||||++++.........+..+.++.
T Consensus       129 ----------~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~  183 (214)
T d2cl5a1         129 ----------DVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG  183 (214)
T ss_dssp             ----------CCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH
T ss_pred             ----------cccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc
Confidence                      3567999998865444433  3667778999999998866655555555554443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5e-11  Score=94.17  Aligned_cols=112  Identities=19%  Similarity=0.230  Sum_probs=90.7

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+.++|||+|||+|..++.+++.  ..++++++|.++...+.|++++...++. +++++..+++.....   .....   
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~-~~i~~~~Gda~e~l~---~~~~~---  130 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALETLD---ELLAA---  130 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH---HHHHT---
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc-ceEEEEEeehhhcch---hhhhh---
Confidence            35889999999999999999874  3579999999999999999999999987 589998887643211   00000   


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                ...++||+|+.+.--..+...++.+.+.|+|||.+++....
T Consensus       131 ----------~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         131 ----------GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             ----------TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             ----------cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence                      13568999999887788889999999999999999996543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=9.7e-11  Score=97.61  Aligned_cols=128  Identities=20%  Similarity=0.188  Sum_probs=89.0

Q ss_pred             HHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHh------CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371           47 LCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF------GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD  118 (222)
Q Consensus        47 ~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~  118 (222)
                      .+..++..+.  +++.+|+|.|||+|.++..+...      ...+++|+|+++.++..|+.++...+..   ......+.
T Consensus       104 ~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~---~~~~~~d~  180 (328)
T d2f8la1         104 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK---MTLLHQDG  180 (328)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC---CEEEESCT
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh---hhhhcccc
Confidence            3444444432  35678999999999998877642      2347999999999999999988776653   33444433


Q ss_pred             cccccccccccccchhccccccccCCCCCCCeeEEEecccccc---------------------HHHHHHHHHHcccCCe
Q 047371          119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------LPQLADHIVSYAKPGA  177 (222)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------~~~~l~~~~~~LkpgG  177 (222)
                      ...                       ....+||+|++|||+..                     ...+++.+.+.|+|||
T Consensus       181 ~~~-----------------------~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G  237 (328)
T d2f8la1         181 LAN-----------------------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGG  237 (328)
T ss_dssp             TSC-----------------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEE
T ss_pred             ccc-----------------------cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCC
Confidence            211                       15678999999999842                     1236899999999999


Q ss_pred             EEEEe---cC-CCCcHHHHHHHHHhhh
Q 047371          178 VVGIS---GI-LSEQLPRIINRYSEFL  200 (222)
Q Consensus       178 ~l~~~---~~-~~~~~~~~~~~~~~~~  200 (222)
                      ++++.   .+ .......+++.+...+
T Consensus       238 ~~~~I~p~~~l~~~~~~~lR~~L~~~~  264 (328)
T d2f8la1         238 YLFFLVPDAMFGTSDFAKVDKFIKKNG  264 (328)
T ss_dssp             EEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred             ceEEEecCccccCchhHHHHHHHHhCC
Confidence            97763   12 3455566777766653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.17  E-value=2e-10  Score=93.75  Aligned_cols=170  Identities=15%  Similarity=0.163  Sum_probs=111.9

Q ss_pred             eeEEeCCCccccc-CCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           27 TNIILNPGLAFGT-GEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        27 ~~~~~~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      +.+.+|....+.. .++.....+........+++++||.+|+|.|..+..+.+.+..+++++|+++.+++.|++......
T Consensus        40 r~L~Ldg~~q~~~~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~  119 (276)
T d1mjfa_          40 RLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDN  119 (276)
T ss_dssp             EEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTT
T ss_pred             eEEEECCceeeeccchhHHHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhcc
Confidence            5566665544422 122333444333223356778999999999999998888777899999999999999998663221


Q ss_pred             --------CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHH
Q 047371          106 --------IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIV  170 (222)
Q Consensus       106 --------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~  170 (222)
                              ....++++...|+..+..                      ..++||+|+++..-..       ..++++.+.
T Consensus       120 ~~~~~~~~~~d~rv~i~~~Da~~~l~----------------------~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~  177 (276)
T d1mjfa_         120 GLLEAMLNGKHEKAKLTIGDGFEFIK----------------------NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVY  177 (276)
T ss_dssp             THHHHHHTTCCSSEEEEESCHHHHHH----------------------HCCCEEEEEEECCCCC-----TTSHHHHHHHH
T ss_pred             chhhhhhccCCCCceEEEChHHHHHh----------------------ccCCCCEEEEeCCCCCCCcccccCHHHHHhhH
Confidence                    223578888888755421                      3567999998654321       256899999


Q ss_pred             HcccCCeEEEEec-CCC---CcHHHHHHHHHhhhhcceecc------cCCceEeeccc
Q 047371          171 SYAKPGAVVGISG-ILS---EQLPRIINRYSEFLEDILVSE------KDDWRCVSGTK  218 (222)
Q Consensus       171 ~~LkpgG~l~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~------~~~w~~~~~~k  218 (222)
                      +.|+|+|++++.. ...   .....+.+.+.+.|..+....      .+.|.-+.+.|
T Consensus       178 ~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as~  235 (276)
T d1mjfa_         178 DALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVK  235 (276)
T ss_dssp             HHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEE
T ss_pred             hhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEeC
Confidence            9999999998842 222   233445555555565544322      46787666554

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=3.1e-10  Score=94.15  Aligned_cols=139  Identities=15%  Similarity=0.142  Sum_probs=96.4

Q ss_pred             ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371           36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI  111 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  111 (222)
                      .|..|..........+....  .++|++|||++||+|.-+..++..  ..+.++++|.++..+...+.++.+.++.  ++
T Consensus        92 ~~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~--~i  169 (313)
T d1ixka_          92 EFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL--NV  169 (313)
T ss_dssp             HHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC--SE
T ss_pred             hhhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh--cc
Confidence            34445444333333333322  468999999999999998888764  4568999999999999999999998875  66


Q ss_pred             eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHH
Q 047371          112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLA  166 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l  166 (222)
                      .....+...+..                      ....||.|++++|+..                         ..+++
T Consensus       170 ~~~~~d~~~~~~----------------------~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL  227 (313)
T d1ixka_         170 ILFHSSSLHIGE----------------------LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLL  227 (313)
T ss_dssp             EEESSCGGGGGG----------------------GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccc----------------------ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHH
Confidence            665555433311                      3567999999888643                         23478


Q ss_pred             HHHHHcccCCeEEEEecC--CCCcHHHHHHHHHh
Q 047371          167 DHIVSYAKPGAVVGISGI--LSEQLPRIINRYSE  198 (222)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~  198 (222)
                      .++.+.|||||++++++.  ...+.+++++.+-+
T Consensus       228 ~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~  261 (313)
T d1ixka_         228 EKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD  261 (313)
T ss_dssp             HHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred             HhhhheeCCCcEEEEeeccCChHhHHHHHHHHHh
Confidence            999999999999877532  33344444444433

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.1e-10  Score=91.15  Aligned_cols=121  Identities=17%  Similarity=0.128  Sum_probs=88.6

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .++|.+|||+++|.|.-+..++.. ....|+++|.++..++..+.++++.++.  ++.....+......           
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~--~~~~~~~~~~~~~~-----------  166 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQW-----------  166 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHH-----------
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc--ceeeeccccccchh-----------
Confidence            467899999999999999988875 3478999999999999999999999875  44444433322110           


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC--C-C
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI--L-S  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~--~-~  186 (222)
                                ...+.||.|++++|+..                         ..+++.++.++|||||++++++.  . .
T Consensus       167 ----------~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~  236 (284)
T d1sqga2         167 ----------CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  236 (284)
T ss_dssp             ----------HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             ----------cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence                      04567999999998743                         23479999999999999887533  3 3


Q ss_pred             CcHHHHHHHHHhh
Q 047371          187 EQLPRIINRYSEF  199 (222)
Q Consensus       187 ~~~~~~~~~~~~~  199 (222)
                      ++...+...++.+
T Consensus       237 ENE~vv~~~l~~~  249 (284)
T d1sqga2         237 ENSLQIKAFLQRT  249 (284)
T ss_dssp             GTHHHHHHHHHHC
T ss_pred             hCHHHHHHHHHhC
Confidence            4444444455543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.10  E-value=3.8e-10  Score=89.46  Aligned_cols=112  Identities=14%  Similarity=0.199  Sum_probs=90.6

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .+.++|||+|+++|..++.+++.  ..++++.+|.++...+.|++++...++. +++++..+++......+..  .+   
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~-~~i~~~~g~a~~~L~~l~~--~~---  131 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALPVLDEMIK--DE---  131 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHH--CG---
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc-cceeeeehHHHHHHHHHHh--cc---
Confidence            36889999999999999999864  3579999999999999999999999987 5899998887544211100  00   


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ...++||+|+.+.--..+...++.+.++|+|||.+++...
T Consensus       132 ----------~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         132 ----------KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             ----------GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             ----------ccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccC
Confidence                      0256799999988777788999999999999999999644

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=2.1e-09  Score=88.99  Aligned_cols=172  Identities=16%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             eeEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh-
Q 047371           27 TNIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL-  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~-  103 (222)
                      +.+.+|....+.... +.....+...-....+..++||.+|.|.|..+..+.+. +..+++++|+++.+++.|++.+.. 
T Consensus        45 ~~L~ldg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~  124 (312)
T d1uira_          45 KVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW  124 (312)
T ss_dssp             EEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHH
T ss_pred             cEEEECCeeeeccccHHHHHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccc
Confidence            445556444432222 22233333222223456789999999999999988876 457999999999999999988743 


Q ss_pred             --cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccc--cc--------cHHHHHHHHHH
Q 047371          104 --NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANIL--LN--------PLPQLADHIVS  171 (222)
Q Consensus       104 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~--~~--------~~~~~l~~~~~  171 (222)
                        ......++++...|+..+...                     ..++||+|+++..  ..        ...++++.+.+
T Consensus       125 ~~~~~~d~rv~i~~~Da~~~l~~---------------------~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~  183 (312)
T d1uira_         125 HQGAFDDPRAVLVIDDARAYLER---------------------TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKA  183 (312)
T ss_dssp             HTTGGGCTTEEEEESCHHHHHHH---------------------CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHH
T ss_pred             ccCccCCCceEEEEchHHHHhhh---------------------cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHH
Confidence              122346888988887655210                     3567999998652  11        13578999999


Q ss_pred             cccCCeEEEEec---C-CCCcH-HHHHHHHHhhhhcceecc------cCCceEeecccC
Q 047371          172 YAKPGAVVGISG---I-LSEQL-PRIINRYSEFLEDILVSE------KDDWRCVSGTKF  219 (222)
Q Consensus       172 ~LkpgG~l~~~~---~-~~~~~-~~~~~~~~~~~~~~~~~~------~~~w~~~~~~k~  219 (222)
                      .|+|||++++..   . ..... ..+.+.+...|..+....      .+.|.-+.+.|.
T Consensus       184 ~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~~  242 (312)
T d1uira_         184 HLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDA  242 (312)
T ss_dssp             TEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             hcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEeCC
Confidence            999999998731   1 12222 445566666665554422      346876666653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=2e-09  Score=88.37  Aligned_cols=172  Identities=12%  Similarity=0.057  Sum_probs=113.0

Q ss_pred             eeEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh-
Q 047371           27 TNIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL-  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~-  103 (222)
                      +-+.+|....+.... +.....+...-....+..++||-+|.|.|..+..+.+. +..+++++|+++.+++.|++.... 
T Consensus        57 ~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~  136 (295)
T d1inla_          57 VVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQT  136 (295)
T ss_dssp             EEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHH
T ss_pred             eEEEECCEEEEecCchhhhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhh
Confidence            345555555554332 22333333222223456789999999999999988876 457899999999999999987653 


Q ss_pred             -cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHccc
Q 047371          104 -NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAK  174 (222)
Q Consensus       104 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~Lk  174 (222)
                       ..+...++++...|+..+..                   .  ..++||+|+++..-..        ..++++.+.+.|+
T Consensus       137 ~~~~~d~rv~v~~~Da~~~l~-------------------~--~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~  195 (295)
T d1inla_         137 SCGFDDPRAEIVIANGAEYVR-------------------K--FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK  195 (295)
T ss_dssp             HGGGGCTTEEEEESCHHHHGG-------------------G--CSSCEEEEEEEC----------CCSHHHHHHHHHHEE
T ss_pred             cccccCCCcEEEhhhHHHHHh-------------------c--CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcC
Confidence             23344688999888765521                   0  4567999998653211        3578999999999


Q ss_pred             CCeEEEEecC-C---CCcHHHHHHHHHhhhhcc-------eecccCCceEeecccC
Q 047371          175 PGAVVGISGI-L---SEQLPRIINRYSEFLEDI-------LVSEKDDWRCVSGTKF  219 (222)
Q Consensus       175 pgG~l~~~~~-~---~~~~~~~~~~~~~~~~~~-------~~~~~~~w~~~~~~k~  219 (222)
                      |||.+++... .   ......+.+.+...|...       +....|.|.-+.+.|.
T Consensus       196 ~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~  251 (295)
T d1inla_         196 EDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKG  251 (295)
T ss_dssp             EEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESS
T ss_pred             CCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEEEEeCC
Confidence            9999998532 2   223345555556656433       3334578887777663

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.02  E-value=4e-09  Score=85.73  Aligned_cols=172  Identities=14%  Similarity=0.109  Sum_probs=115.6

Q ss_pred             eeEEeCCCcccccCCc-chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh-
Q 047371           27 TNIILNPGLAFGTGEH-ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL-  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~-  103 (222)
                      +.+.+|....+..... .....+........++.++||-+|.|.|..+..+.++ +..+++.+|+++.+++.|++.... 
T Consensus        43 ~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~  122 (274)
T d1iy9a_          43 NMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI  122 (274)
T ss_dssp             EEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH
T ss_pred             eEEEECCceeeecCchhhchhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhh
Confidence            5566666555433222 2333332222233456789999999999999998876 567999999999999999997753 


Q ss_pred             -cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccC
Q 047371          104 -NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKP  175 (222)
Q Consensus       104 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lkp  175 (222)
                       ...+..++++...|+..+..                   .  ..++||+|+.+.+-..       ..++++.+.+.|+|
T Consensus       123 ~~~~~d~r~~i~~~D~~~~l~-------------------~--~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~  181 (274)
T d1iy9a_         123 AGKLDDPRVDVQVDDGFMHIA-------------------K--SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKE  181 (274)
T ss_dssp             HTTTTSTTEEEEESCSHHHHH-------------------T--CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEE
T ss_pred             cccccCCCeEEEechHHHHHh-------------------h--cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCC
Confidence             22344688999888765521                   0  4568999998753211       46789999999999


Q ss_pred             CeEEEEecC-CC---CcHHHHHHHHHhhhhcceec-------ccCCceEeecccC
Q 047371          176 GAVVGISGI-LS---EQLPRIINRYSEFLEDILVS-------EKDDWRCVSGTKF  219 (222)
Q Consensus       176 gG~l~~~~~-~~---~~~~~~~~~~~~~~~~~~~~-------~~~~w~~~~~~k~  219 (222)
                      +|.++.... ..   .....+.+.+.+.|......       ..+.|.-+.+.|.
T Consensus       182 ~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~  236 (274)
T d1iy9a_         182 DGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKK  236 (274)
T ss_dssp             EEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred             CceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEcCC
Confidence            999998532 22   22345666666666544332       3577877766654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.01  E-value=1.4e-09  Score=93.81  Aligned_cols=138  Identities=21%  Similarity=0.244  Sum_probs=100.5

Q ss_pred             cCCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh---C-----------CCEEEEEeCChHHHHHHHHHHH
Q 047371           39 TGEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF---G-----------AAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        39 ~~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~---~-----------~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      .|++.|++.+.+++...+.  ++.+|+|.+||+|.+...+.+.   .           ..++.|+|+++.+...|+.++.
T Consensus       141 ~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~  220 (425)
T d2okca1         141 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  220 (425)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             chhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence            4677788888888877754  4689999999999998877652   1           1359999999999999999998


Q ss_pred             hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------------------H
Q 047371          103 LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------------L  162 (222)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------------~  162 (222)
                      .++...........+....                       .+..+||+|++|||+..                    .
T Consensus       221 l~g~~~~~~~i~~~d~l~~-----------------------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~  277 (425)
T d2okca1         221 LHGIGTDRSPIVCEDSLEK-----------------------EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQ  277 (425)
T ss_dssp             HTTCCSSCCSEEECCTTTS-----------------------CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHH
T ss_pred             hcCCccccceeecCchhhh-----------------------hcccccceEEecCCCCCCccccchhhhhhcccccccHH
Confidence            8887644445555443221                       15678999999999842                    1


Q ss_pred             HHHHHHHHHcccCCeEEEEe---cCC-C-CcHHHHHHHHHhh
Q 047371          163 PQLADHIVSYAKPGAVVGIS---GIL-S-EQLPRIINRYSEF  199 (222)
Q Consensus       163 ~~~l~~~~~~LkpgG~l~~~---~~~-~-~~~~~~~~~~~~~  199 (222)
                      ..++..+.+.|++||.+.+.   +.. . .....+++.+.+.
T Consensus       278 ~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~  319 (425)
T d2okca1         278 LNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQD  319 (425)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHh
Confidence            24789999999999987763   222 2 3345677777665

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.5e-09  Score=85.24  Aligned_cols=120  Identities=11%  Similarity=-0.001  Sum_probs=85.1

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++|.+|||++||+|.-+..++..  +...++++|+++..++.++.++.+.++.  ++.+...|...+...         
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~--~~~~~~~d~~~~~~~---------  160 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS--CCELAEEDFLAVSPS---------  160 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGSCTT---------
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc--ceeeeehhhhhhccc---------
Confidence            457999999999999999888764  4578999999999999999999999986  777777766443210         


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc---------------------------HHHHHHHHHHcccCCeEEEEecC--
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP---------------------------LPQLADHIVSYAKPGAVVGISGI--  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~~~--  184 (222)
                                ....++||.|++++|+..                           ...++..+. .++|||.++.++.  
T Consensus       161 ----------~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         161 ----------DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             ----------CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             ----------ccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence                      002356999999988643                           112455566 4799998777532  


Q ss_pred             CCCcHHHHHHHHH
Q 047371          185 LSEQLPRIINRYS  197 (222)
Q Consensus       185 ~~~~~~~~~~~~~  197 (222)
                      ...+.+++++.+-
T Consensus       230 ~~~ENe~vV~~~L  242 (293)
T d2b9ea1         230 CQEENEDVVRDAL  242 (293)
T ss_dssp             CGGGTHHHHHHHH
T ss_pred             ChhHhHHHHHHHH
Confidence            3344444444443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.98  E-value=3.1e-09  Score=87.69  Aligned_cols=171  Identities=13%  Similarity=0.095  Sum_probs=110.9

Q ss_pred             eeEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHh-
Q 047371           27 TNIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAAL-  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~-  103 (222)
                      +.+.+|-...+.... .....++...-....+..++||-+|.|.|..+..+.+.+ ..+++.+|+++.+++.|++.... 
T Consensus        74 ~~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~  153 (312)
T d2b2ca1          74 NVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM  153 (312)
T ss_dssp             EEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT
T ss_pred             CEEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhh
Confidence            445566555554333 233443333222334567899999999999999998864 47999999999999999997643 


Q ss_pred             -cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccC
Q 047371          104 -NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKP  175 (222)
Q Consensus       104 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lkp  175 (222)
                       .++...++++...|+..+..                   .  ..++||+|+++..-..       ..++++.+.+.|+|
T Consensus       154 ~~~~~dprv~i~i~Da~~~l~-------------------~--~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~  212 (312)
T d2b2ca1         154 SCGFSHPKLDLFCGDGFEFLK-------------------N--HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKE  212 (312)
T ss_dssp             SGGGGCTTEEEECSCHHHHHH-------------------H--CTTCEEEEEECCC-------------HHHHHHHHEEE
T ss_pred             ccccCCCCeEEEEchHHHHHH-------------------h--CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCC
Confidence             22334678888888765421                   0  4668999998753211       34689999999999


Q ss_pred             CeEEEEec-CCC---CcHHHHHHHHHhhhhccee-------cccCCceEeeccc
Q 047371          176 GAVVGISG-ILS---EQLPRIINRYSEFLEDILV-------SEKDDWRCVSGTK  218 (222)
Q Consensus       176 gG~l~~~~-~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~w~~~~~~k  218 (222)
                      ||.++... ...   +....+.+.+...|..+..       ...|.|.-+.+.|
T Consensus       213 ~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk  266 (312)
T d2b2ca1         213 DGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAK  266 (312)
T ss_dssp             EEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             CcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeEEEC
Confidence            99999842 222   2234455555555554433       2347886666655

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.5e-09  Score=86.49  Aligned_cols=172  Identities=13%  Similarity=0.109  Sum_probs=112.4

Q ss_pred             eeEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh-
Q 047371           27 TNIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL-  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~-  103 (222)
                      +.+.++....+.... .....++...-....+..++||-+|.|.|..+..+.++ +..+++.+|+++.+++.|++.... 
T Consensus        46 ~~L~lDg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~  125 (285)
T d2o07a1          46 NVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGM  125 (285)
T ss_dssp             EEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH
T ss_pred             eEEEECCcEEEecCCHHHHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhh
Confidence            456666555443322 22333332222223456789999999999999998886 467999999999999999987643 


Q ss_pred             -cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccC
Q 047371          104 -NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKP  175 (222)
Q Consensus       104 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lkp  175 (222)
                       ......++++...|+..+..                   .  ..++||+|+++..-..       ..++++.+++.|+|
T Consensus       126 ~~~~~d~rv~i~~~Da~~~l~-------------------~--~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~  184 (285)
T d2o07a1         126 AIGYSSSKLTLHVGDGFEFMK-------------------Q--NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKE  184 (285)
T ss_dssp             HGGGGCTTEEEEESCHHHHHH-------------------T--CSSCEEEEEEECC-----------CHHHHHHHHHEEE
T ss_pred             ccccCCCCceEEEccHHHHHh-------------------c--CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCC
Confidence             22334688999888765521                   0  3568999999753211       23579999999999


Q ss_pred             CeEEEEec-CCC---CcHHHHHHHHHhhhhccee-------cccCCceEeecccC
Q 047371          176 GAVVGISG-ILS---EQLPRIINRYSEFLEDILV-------SEKDDWRCVSGTKF  219 (222)
Q Consensus       176 gG~l~~~~-~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~w~~~~~~k~  219 (222)
                      ||.+++.. ...   .....+.+.+...|..+..       ...+.|.-+.+.|.
T Consensus       185 ~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk~  239 (285)
T d2o07a1         185 DGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKN  239 (285)
T ss_dssp             EEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             CCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEECC
Confidence            99999842 222   2234455556665655432       33567876666653

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.92  E-value=2.8e-10  Score=91.29  Aligned_cols=117  Identities=15%  Similarity=0.259  Sum_probs=83.3

Q ss_pred             ccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE
Q 047371           36 AFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH  114 (222)
Q Consensus        36 ~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  114 (222)
                      .||+..-.....+..+++.. ..++++|||+|||+|.+|..+++.+ .+++++|+++.+++.++++....    .++.+.
T Consensus         6 k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~----~n~~ii   80 (245)
T d1yuba_           6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN----TRVTLI   80 (245)
T ss_dssp             CSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC----SEEEEC
T ss_pred             CCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhc----cchhhh
Confidence            34443333333344455444 5678899999999999999999885 68999999999888776654321    478898


Q ss_pred             ecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEE
Q 047371          115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV  179 (222)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l  179 (222)
                      .+|+..+.+                      +....+.+++|.|++....++..+...-.+...+
T Consensus        81 ~~D~l~~~~----------------------~~~~~~~vv~NLPY~Ist~il~~~l~~~~~~~~v  123 (245)
T d1yuba_          81 HQDILQFQF----------------------PNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIY  123 (245)
T ss_dssp             CSCCTTTTC----------------------CCSSEEEEEEECCSSSCHHHHHHHHHHCCCEEEE
T ss_pred             hhhhhcccc----------------------ccceeeeEeeeeehhhhHHHHHHHhhhchhhhhh
Confidence            888876643                      5566788999999998777766655444444433

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.91  E-value=1.3e-08  Score=80.84  Aligned_cols=90  Identities=13%  Similarity=0.206  Sum_probs=71.5

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++++++|||+|||+|.+|..+++.+ .+++++|+++.+++.++++....    .++++..+|+..+..            
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~----~n~~i~~~D~l~~~~------------   81 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKF------------   81 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCC------------
T ss_pred             CCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc----cchhhhhhhhhhccc------------
Confidence            4689999999999999999999885 68999999999999988865432    488899988876532            


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHc
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSY  172 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~  172 (222)
                                +......|++|.||+....++..+...
T Consensus        82 ----------~~~~~~~vv~NLPYnIss~il~~ll~~  108 (235)
T d1qama_          82 ----------PKNQSYKIFGNIPYNISTDIIRKIVFD  108 (235)
T ss_dssp             ----------CSSCCCEEEEECCGGGHHHHHHHHHHS
T ss_pred             ----------cccccceeeeeehhhhhHHHHHHHHhh
Confidence                      233345688999999878877766543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.91  E-value=3.3e-09  Score=82.71  Aligned_cols=121  Identities=20%  Similarity=0.195  Sum_probs=79.5

Q ss_pred             hHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           45 TKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        45 ~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      +..+.++|...  .+++.+|||.|||+|.++..+.+.  ...+++|+|+++.++..++           .......+...
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~-----------~~~~~~~~~~~   72 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-----------WAEGILADFLL   72 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-----------TEEEEESCGGG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-----------cceeeeeehhc
Confidence            34445555444  456889999999999998877653  3467999999986543221           22344443322


Q ss_pred             cccccccccccchhccccccccCCCCCCCeeEEEecccccc--------------------------------HHHHHHH
Q 047371          121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------------------------LPQLADH  168 (222)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------------------------~~~~l~~  168 (222)
                      ..                       ...+||++++|+|+..                                ...++..
T Consensus        73 ~~-----------------------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~  129 (223)
T d2ih2a1          73 WE-----------------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK  129 (223)
T ss_dssp             CC-----------------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH
T ss_pred             cc-----------------------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHH
Confidence            21                       4568999999999632                                2246788


Q ss_pred             HHHcccCCeEEEEe---cC-CCCcHHHHHHHHHhh
Q 047371          169 IVSYAKPGAVVGIS---GI-LSEQLPRIINRYSEF  199 (222)
Q Consensus       169 ~~~~LkpgG~l~~~---~~-~~~~~~~~~~~~~~~  199 (222)
                      +.+.|++||++.+.   .+ .......+++.+.+.
T Consensus       130 al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~  164 (223)
T d2ih2a1         130 AVRLLKPGGVLVFVVPATWLVLEDFALLREFLARE  164 (223)
T ss_dssp             HHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred             HHHhcccCCceEEEEeeeeccCcchHHHHHHHHhc
Confidence            99999999998773   22 234455666666654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.4e-08  Score=77.44  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=93.1

Q ss_pred             HHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371           48 CLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA  123 (222)
Q Consensus        48 ~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~  123 (222)
                      +.++..++  ++++.+|||+||++|.++..+.+.  +...++++|+.+           ...+  .++.+..++......
T Consensus        10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-----------~~~i--~~~~~~~~d~~~~~~   76 (180)
T d1ej0a_          10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----------MDPI--VGVDFLQGDFRDELV   76 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----------CCCC--TTEEEEESCTTSHHH
T ss_pred             HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-----------cccc--CCceEeecccccchh
Confidence            44444444  688999999999999999988764  457899999866           1233  367777777654321


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCCcH
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSEQL  189 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~  189 (222)
                      . .....             ....+++|+|+++...+.              ....+.-+.+.|++||.+++.-+.....
T Consensus        77 ~-~~~~~-------------~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~  142 (180)
T d1ej0a_          77 M-KALLE-------------RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF  142 (180)
T ss_dssp             H-HHHHH-------------HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH
T ss_pred             h-hhhhh-------------hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccH
Confidence            0 00000             114568999999876432              1235788889999999999987777788


Q ss_pred             HHHHHHHHhhhhcceec
Q 047371          190 PRIINRYSEFLEDILVS  206 (222)
Q Consensus       190 ~~~~~~~~~~~~~~~~~  206 (222)
                      .++...+...|..+...
T Consensus       143 ~~l~~~l~~~F~~V~~~  159 (180)
T d1ej0a_         143 DEYLREIRSLFTKVKVR  159 (180)
T ss_dssp             HHHHHHHHHHEEEEEEE
T ss_pred             HHHHHHHHhhcCEEEEE
Confidence            88999998888766554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=1.6e-08  Score=82.76  Aligned_cols=173  Identities=15%  Similarity=0.143  Sum_probs=112.1

Q ss_pred             eeEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh-
Q 047371           27 TNIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL-  103 (222)
Q Consensus        27 ~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~-  103 (222)
                      +.+.+|-...+.... .....++........+..++||-+|.|.|..+..+.+. +..+++++|+++.+++.+++.... 
T Consensus        48 r~L~LDg~~q~~e~de~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~  127 (290)
T d1xj5a_          48 KVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV  127 (290)
T ss_dssp             EEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH
T ss_pred             eEEEECCeEeeeccchhHHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhh
Confidence            445555554443222 22333333333233456789999999999999998886 457899999999999999987642 


Q ss_pred             -cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--c-----HHHHHHHHHHcccC
Q 047371          104 -NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--P-----LPQLADHIVSYAKP  175 (222)
Q Consensus       104 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~-----~~~~l~~~~~~Lkp  175 (222)
                       ......+++....|+..+..                   . ...++||+|+.+..-.  .     ..++++.+.+.|+|
T Consensus       128 ~~~~~~~r~~i~~~Da~~~l~-------------------~-~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~  187 (290)
T d1xj5a_         128 AIGYEDPRVNLVIGDGVAFLK-------------------N-AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRP  187 (290)
T ss_dssp             HGGGGSTTEEEEESCHHHHHH-------------------T-SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEE
T ss_pred             hccccCCCcEEEEccHHHHHh-------------------h-ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCC
Confidence             23344688888888754421                   0 1356899999865321  1     35689999999999


Q ss_pred             CeEEEEec-CC---CCcHHHHHHHHHhhhhcc--------eecccCCceEeecccC
Q 047371          176 GAVVGISG-IL---SEQLPRIINRYSEFLEDI--------LVSEKDDWRCVSGTKF  219 (222)
Q Consensus       176 gG~l~~~~-~~---~~~~~~~~~~~~~~~~~~--------~~~~~~~w~~~~~~k~  219 (222)
                      ||.+++.. ..   ......+.+.+.+.|...        +....|.|.-+.+.|+
T Consensus       188 ~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~  243 (290)
T d1xj5a_         188 GGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE  243 (290)
T ss_dssp             EEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred             CcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeCC
Confidence            99999852 22   233344555666555322        2223477877766653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=5.4e-09  Score=88.50  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=79.1

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCC-------------ceeEEecCCccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPK-------------KIKLHLVPDRTFTA  123 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-------------~v~~~~~~~~~~~~  123 (222)
                      ++.+|||..||+|..++..+. .+..+|+++|+|+.+++.+++|+..|+....             .+.....|...+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            688999999999999996554 5777999999999999999999998876521             12222222221110


Q ss_pred             ccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                           .....||+|..+| +.....+++.+.+.++.||.+.++
T Consensus       125 ---------------------~~~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         125 ---------------------ERHRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             ---------------------HSTTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------------------hhcCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEE
Confidence                                 0345799999997 666778999999999999999994

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.85  E-value=1.3e-08  Score=78.37  Aligned_cols=124  Identities=13%  Similarity=0.157  Sum_probs=69.7

Q ss_pred             CCcEEEEccCCCH----HHHHHHHh-----CCCEEEEEeCChHHHHHHHHHHHhcC----CCCCc--eeEEecCCc-ccc
Q 047371           59 GELFLDYGTGSGI----LGIAAIKF-----GAAMFVGVDIDPQVIKSAHQNAALNN----IGPKK--IKLHLVPDR-TFT  122 (222)
Q Consensus        59 ~~~vLD~G~G~G~----~~~~la~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~--v~~~~~~~~-~~~  122 (222)
                      ..+||++|||+|.    +++.+.+.     ..-+|+|+|+++.+++.|++......    +....  --+...... .-.
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            4589999999996    33334332     12379999999999999986542111    00000  001111110 000


Q ss_pred             cccccccccchhccccccccC-CCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371          123 ASMNERVDGVVEYLSSHEIRG-ISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      ..........+.++..+.+.. ..+.++||+|+|..++..     ...+++.+++.|+|||++++-
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            011111112222222222222 224678999999666544     346899999999999999883

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=2.4e-08  Score=76.24  Aligned_cols=128  Identities=16%  Similarity=0.209  Sum_probs=92.6

Q ss_pred             HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN  126 (222)
Q Consensus        48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (222)
                      +.+.+..+ .++|..++|..+|.|..+..+.+.. ++|+|+|.++.+++.|++..      .+++.+.......+..   
T Consensus         7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~------~~~~~~~~~~f~~~~~---   76 (182)
T d1wg8a2           7 YQEALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLH------LPGLTVVQGNFRHLKR---   76 (182)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC------CTTEEEEESCGGGHHH---
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcc------ccceeEeehHHHHHHH---
Confidence            34444333 5689999999999999999888764 69999999999999987641      2477787776655421   


Q ss_pred             cccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371          127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN  194 (222)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (222)
                       .....             ..+.+|.|+.+..+..            +...++...+.|++||.+++..+.......+.+
T Consensus        77 -~l~~~-------------~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~  142 (182)
T d1wg8a2          77 -HLAAL-------------GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKR  142 (182)
T ss_dssp             -HHHHT-------------TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHH
T ss_pred             -HHHHc-------------CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHH
Confidence             11111             4567999999876643            334789999999999999987776655555666


Q ss_pred             HHHhh
Q 047371          195 RYSEF  199 (222)
Q Consensus       195 ~~~~~  199 (222)
                      .+.+.
T Consensus       143 ~~~e~  147 (182)
T d1wg8a2         143 FLRES  147 (182)
T ss_dssp             HHHHH
T ss_pred             HHhhc
Confidence            66554

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=6e-08  Score=75.37  Aligned_cols=99  Identities=20%  Similarity=0.193  Sum_probs=84.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+++|+|+|.|.-++.+|- .+..+++.+|.+...+.-.+......++.  ++++...+++.+.              
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~~--------------  128 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE--NIEPVQSRVEEFP--------------  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEECCTTTSC--------------
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc--ceeeeccchhhhc--------------
Confidence            567999999999999998885 46789999999999999999888888885  8888888876652              


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                               ...+||+|++... ..+..++..+...++++|.+++.
T Consensus       129 ---------~~~~fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         129 ---------SEPPFDGVISRAF-ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             ---------CCSCEEEEECSCS-SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ---------cccccceehhhhh-cCHHHHHHHHHHhcCCCcEEEEE
Confidence                     4568999998774 45788999999999999999885

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=5e-08  Score=85.93  Aligned_cols=140  Identities=19%  Similarity=0.243  Sum_probs=94.8

Q ss_pred             ccCCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh----C---------------CCEEEEEeCChHHHHH
Q 047371           38 GTGEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF----G---------------AAMFVGVDIDPQVIKS   96 (222)
Q Consensus        38 ~~~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~----~---------------~~~v~gvD~s~~~l~~   96 (222)
                      ..|++.|++.+.+++..++.  ++.+|+|.+||+|.+...+.++    .               ...++|+|+++.+...
T Consensus       142 ~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l  221 (524)
T d2ar0a1         142 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  221 (524)
T ss_dssp             ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             ccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence            34778888888888887754  4679999999999998876542    1               1258999999999999


Q ss_pred             HHHHHHhcCCCCCce----eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------
Q 047371           97 AHQNAALNNIGPKKI----KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------  161 (222)
Q Consensus        97 a~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------  161 (222)
                      |+.++..++... ++    .....+....                     +.....+||+|++|||+..           
T Consensus       222 a~~nl~l~~~~~-~i~~~~~~~~~~~l~~---------------------d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~  279 (524)
T d2ar0a1         222 ALMNCLLHDIEG-NLDHGGAIRLGNTLGS---------------------DGENLPKAHIVATNPPFGSAAGTNITRTFV  279 (524)
T ss_dssp             HHHHHHTTTCCC-BGGGTBSEEESCTTSH---------------------HHHTSCCEEEEEECCCCTTCSSCCCCSCCS
T ss_pred             HHHHHHhhcccc-cccccchhhhhhhhhh---------------------cccccccceeEEecCCccccccccchhhhc
Confidence            999988776542 11    1111111100                     0114567999999999842           


Q ss_pred             ------HHHHHHHHHHcccCCeEEEEe---cCC--CCcHHHHHHHHHhh
Q 047371          162 ------LPQLADHIVSYAKPGAVVGIS---GIL--SEQLPRIINRYSEF  199 (222)
Q Consensus       162 ------~~~~l~~~~~~LkpgG~l~~~---~~~--~~~~~~~~~~~~~~  199 (222)
                            ...+++++.+.|++||++.+.   +++  ......+++.+.+.
T Consensus       280 ~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~  328 (524)
T d2ar0a1         280 HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDK  328 (524)
T ss_dssp             SCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHc
Confidence                  123789999999999997763   222  33345677777655

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.9e-07  Score=75.59  Aligned_cols=91  Identities=13%  Similarity=0.283  Sum_probs=73.7

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      +.+++.|||+|+|.|.+|..+++.+ .+++++|+++..++..++........ .++++...|...+              
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~-~~~~~i~~D~l~~--------------   82 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKT--------------   82 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTS--------------
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccc-cchhhhHHHHhhh--------------
Confidence            4578899999999999999999886 69999999999999998887654432 4788988887655              


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHc
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSY  172 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~  172 (222)
                                .....+.|++|.|++....++..+...
T Consensus        83 ----------~~~~~~~vV~NLPY~Iss~il~~~~~~  109 (278)
T d1zq9a1          83 ----------DLPFFDTCVANLPYQISSPFVFKLLLH  109 (278)
T ss_dssp             ----------CCCCCSEEEEECCGGGHHHHHHHHHHC
T ss_pred             ----------hhhhhhhhhcchHHHHHHHHHHHHHhh
Confidence                      233457899999999888887766554

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.53  E-value=7.9e-07  Score=70.61  Aligned_cols=93  Identities=19%  Similarity=0.116  Sum_probs=68.4

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ...+|+|+|||+|.++..+++ ++..+++..|+ |..++       ..+. .+++.+...|.-.                
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~-~~ri~~~~gd~~~----------------  135 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPP-LSGIEHVGGDMFA----------------  135 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCC-CTTEEEEECCTTT----------------
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCC-CCCeEEecCCccc----------------
Confidence            347899999999999998876 47788999998 33432       2222 2578888776521                


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                               +....|++++...+|..     ..+++++++.|+|||.+++.+.
T Consensus       136 ---------~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         136 ---------SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             ---------CCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------ccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence                     22346999998877763     3579999999999999998643

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=4e-07  Score=72.74  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=69.0

Q ss_pred             hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ..+++.|||+|||.|.+|..+++.+ .+++++|+++.+++..+......    ++++++.+|+..+.+.  . ....   
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~----~~~~ii~~D~l~~~~~--~-~~~~---   87 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNFG--E-LAEK---   87 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCHH--H-HHHH---
T ss_pred             CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhc----cchhHHhhhhhhhccc--c-cccc---
Confidence            4578999999999999999999875 68999999999999887754322    4788999888765321  0 0000   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHH
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVS  171 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~  171 (222)
                                ..++ -.|+.|.|++...+++..+..
T Consensus        88 ----------~~~~-~~vvgNlPY~Iss~Il~~l~~  112 (252)
T d1qyra_          88 ----------MGQP-LRVFGNLPYNISTPLMFHLFS  112 (252)
T ss_dssp             ----------HTSC-EEEEEECCTTTHHHHHHHHHT
T ss_pred             ----------cCCC-eEEEecchHHHHHHHHHHhcc
Confidence                      1223 478899999988887766643

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.36  E-value=2.7e-06  Score=67.12  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=82.7

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+++|+|+|.|.-++.++- .+..+++.+|-+...+.-.+......+++  ++.+....++.+..             
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~--n~~i~~~R~E~~~~-------------  134 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE--NTTFCHDRAETFGQ-------------  134 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTT-------------
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC--CcEEEeehhhhccc-------------
Confidence            467899999999999998875 57789999999999998888888888886  78887776654421             


Q ss_pred             ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                            .-...++||+|++... ..+..+++.+...+++||.+++.
T Consensus       135 ------~~~~~~~~D~v~sRAv-a~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         135 ------RKDVRESYDIVTARAV-ARLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             ------CTTTTTCEEEEEEECC-SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ------cccccccceEEEEhhh-hCHHHHHHHHhhhcccCCEEEEE
Confidence                  0002467999999764 45889999999999999998885

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.35  E-value=4.2e-06  Score=66.26  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=67.3

Q ss_pred             CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ...+|+|+|||+|.++..+++ ++..+++..|+ |..++.+       +.. +++++...|...                
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~~-~rv~~~~gD~f~----------------  134 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SGS-NNLTYVGGDMFT----------------  134 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CCB-TTEEEEECCTTT----------------
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------ccc-CceEEEecCccc----------------
Confidence            346899999999999998776 47789999998 4343322       222 588888877532                


Q ss_pred             ccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCC---eEEEEe
Q 047371          137 SSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPG---AVVGIS  182 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lkpg---G~l~~~  182 (222)
                               +...+|++++...+|+.     ..+++++++.|+||   |.+++.
T Consensus       135 ---------~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         135 ---------SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             ---------CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             ---------CCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence                     22357999998888763     35899999999998   666664

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.25  E-value=1.9e-06  Score=67.87  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=64.5

Q ss_pred             CCCcEEEEccCCCHHHHHHHHh-----CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGSGILGIAAIKF-----GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      ++++|||+|++.|..+..++..     ..++++++|+++.....+.     ..  .+++++..++.....     ....+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~--~~~I~~i~gDs~~~~-----~~~~l  147 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SD--MENITLHQGDCSDLT-----TFEHL  147 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GG--CTTEEEEECCSSCSG-----GGGGG
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----cc--ccceeeeecccccHH-----HHHHH
Confidence            5789999999999877766532     3579999999874332211     11  247888888764431     11122


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHH--HHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLAD--HIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~--~~~~~LkpgG~l~~~~~  184 (222)
                                   ....+|+|+.+.. |.....+.  .+.+.|++||++++.+.
T Consensus       148 -------------~~~~~dlIfID~~-H~~~~v~~~~~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         148 -------------REMAHPLIFIDNA-HANTFNIMKWAVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             -------------SSSCSSEEEEESS-CSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             -------------HhcCCCEEEEcCC-cchHHHHHHHHHhcccCcCCEEEEEcC
Confidence                         3445788887654 33222111  35689999999999654

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.09  E-value=1.1e-05  Score=63.76  Aligned_cols=91  Identities=11%  Similarity=0.007  Sum_probs=63.1

Q ss_pred             CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ..+|+|+|||+|..+..+++. +..++++.|+.+ .++       .... ..++.+...|....          +     
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~-~~r~~~~~~d~~~~----------~-----  137 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIE-------DAPS-YPGVEHVGGDMFVS----------I-----  137 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTT-------TCCC-CTTEEEEECCTTTC----------C-----
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhh-------hccc-CCceEEeccccccc----------C-----
Confidence            468999999999999988864 778999999965 222       1122 24677776664221          0     


Q ss_pred             cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEec
Q 047371          138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                              |.  .|+++....++.     ...+++++++.|+|||.+++.+
T Consensus       138 --------P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         138 --------PK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             --------CC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             --------CC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence                    32  456666555543     3458999999999999988853

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.07  E-value=2.4e-05  Score=61.59  Aligned_cols=124  Identities=7%  Similarity=0.041  Sum_probs=71.5

Q ss_pred             HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCC-CCc-eeEEecCCcccccc
Q 047371           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIG-PKK-IKLHLVPDRTFTAS  124 (222)
Q Consensus        49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~-v~~~~~~~~~~~~~  124 (222)
                      .++..+. ++++.+|+|+|||.|..+..++... ...+.|+++--..   ..  ....... ..+ +++...        
T Consensus        56 ~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~---~e--~P~~~~~~~~ni~~~~~~--------  122 (257)
T d2p41a1          56 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG---HE--EPIPMSTYGWNLVRLQSG--------  122 (257)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT---SC--CCCCCCSTTGGGEEEECS--------
T ss_pred             HHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc---cc--CCccccccccccccchhh--------
Confidence            3344333 6788899999999999999998763 3467788773210   00  0000000 001 111111        


Q ss_pred             cccccccchhccccccccCCCCCCCeeEEEecccccc---------HHHHHHHHHHcccCCeEEEEecCC--CCcHHHHH
Q 047371          125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------LPQLADHIVSYAKPGAVVGISGIL--SEQLPRII  193 (222)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~  193 (222)
                                    .++. ..+.+++|+|+|+..-..         ...+++.+.+.|+|||.+++.-+.  ..+..+..
T Consensus       123 --------------~dv~-~l~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~l  187 (257)
T d2p41a1         123 --------------VDVF-FIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKM  187 (257)
T ss_dssp             --------------CCTT-TSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHH
T ss_pred             --------------hhHH-hcCCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHH
Confidence                          1111 115778999999864322         224688888999999998885333  34444445


Q ss_pred             HHHHhhh
Q 047371          194 NRYSEFL  200 (222)
Q Consensus       194 ~~~~~~~  200 (222)
                      +.++..|
T Consensus       188 e~lq~~f  194 (257)
T d2p41a1         188 EALQRKH  194 (257)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5565555

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.80  E-value=0.00013  Score=53.70  Aligned_cols=108  Identities=18%  Similarity=0.234  Sum_probs=67.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++++|+-+|||. |.++..+++....+++++|.++..++.|++.    +.   ...+.......-..   +....+  
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga---~~~~~~~~~~~~~~---~~~~~~--   91 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA---DVTLVVDPAKEEES---SIIERI--   91 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC---SEEEECCTTTSCHH---HHHHHH--
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC---cEEEeccccccccc---hhhhhh--
Confidence            67899999999885 6666667765446999999999999998874    21   11121111100000   000000  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                             .. ...+.+|+++-...   ....++.+.++++++|.+++.+...
T Consensus        92 -------~~-~~g~g~D~vid~~g---~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          92 -------RS-AIGDLPNVTIDCSG---NEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             -------HH-HSSSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             -------hc-ccccCCceeeecCC---ChHHHHHHHHHHhcCCceEEEecCC
Confidence                   00 02356899986442   2467888889999999999976544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00014  Score=53.76  Aligned_cols=106  Identities=18%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      ++++++|+-+|||+ |..+..+++. +..+|+++|.++..++.|++.    |..  .  ....+...... ........ 
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~--~--~~~~~~~~~~~-~~~~~~~~-   93 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD--L--VLQISKESPQE-IARKVEGQ-   93 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS--E--EEECSSCCHHH-HHHHHHHH-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc--c--ccccccccccc-cccccccc-
Confidence            67899999999987 4555566654 666899999999999988764    322  1  11111111100 00000000 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                                  ....+|+++....   -...++.+.+++++||.+++.+...
T Consensus        94 ------------~g~g~Dvvid~~G---~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          94 ------------LGCKPEVTIECTG---AEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             ------------HTSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             ------------CCCCceEEEeccC---CchhHHHHHHHhcCCCEEEEEecCC
Confidence                        2346899986443   2467889999999999999976543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.74  E-value=4.3e-05  Score=59.67  Aligned_cols=56  Identities=27%  Similarity=0.402  Sum_probs=47.8

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      .++..+++....+|+.|||..||+|..+.++.+.+ .+.+|+|+++..++.|++++.
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            44555555556789999999999999999888886 789999999999999999874

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.66  E-value=4.9e-05  Score=61.14  Aligned_cols=59  Identities=20%  Similarity=0.308  Sum_probs=49.7

Q ss_pred             HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      .++..++.....+|+.|||..||+|..+.++...+ .+.+|+|+++..++.|++++....
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHhcc
Confidence            55566666567789999999999999999888886 789999999999999999876543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=0.00047  Score=56.27  Aligned_cols=82  Identities=10%  Similarity=0.060  Sum_probs=57.6

Q ss_pred             cccccCCcchhHHHHHHHHhh-hc------CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCC
Q 047371           35 LAFGTGEHATTKLCLLLLQSL-IK------GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNI  106 (222)
Q Consensus        35 ~~f~~~~~~~~~~~~~~l~~~-~~------~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~  106 (222)
                      ..||+..-.....+..++... +.      .+++|||+|+|.|.+|..+... ...+++++|.++..++..+....    
T Consensus        13 k~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----   88 (322)
T d1i4wa_          13 FFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----   88 (322)
T ss_dssp             CGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----
T ss_pred             hhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----
Confidence            345554444444455554433 22      3568999999999999998875 45689999999999988876543    


Q ss_pred             CCCceeEEecCCccc
Q 047371          107 GPKKIKLHLVPDRTF  121 (222)
Q Consensus       107 ~~~~v~~~~~~~~~~  121 (222)
                       .+++.+...|...+
T Consensus        89 -~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          89 -GSPLQILKRDPYDW  102 (322)
T ss_dssp             -TSSCEEECSCTTCH
T ss_pred             -CCCcEEEeCchhhc
Confidence             23677888877544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.62  E-value=0.00012  Score=57.83  Aligned_cols=80  Identities=15%  Similarity=0.099  Sum_probs=59.9

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-------CCceeEEecCCcccccccccccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-------PKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      .+|||..||.|.-+..++..+ .+|+++|.++......+..+.+....       ..++++...|...+..         
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~---------  159 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT---------  159 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST---------
T ss_pred             CEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHh---------
Confidence            489999999999999999987 68999999998777666655432211       1367888887655421         


Q ss_pred             hhccccccccCCCCCCCeeEEEecccccc
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                                +  ....||+|..+|++..
T Consensus       160 ----------~--~~~~~DvIYlDPMFp~  176 (250)
T d2oyra1         160 ----------D--ITPRPQVVYLDPMFPH  176 (250)
T ss_dssp             ----------T--CSSCCSEEEECCCCCC
T ss_pred             ----------c--cCCCCCEEEECCCCcc
Confidence                      1  3456999999999964

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.59  E-value=2.6e-05  Score=58.25  Aligned_cols=103  Identities=23%  Similarity=0.317  Sum_probs=67.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++|+-+|||. |..+..+++. +..+|+++|.++..++.|++.    |..   ..+...+ +.+.    +.+..  
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~---~~i~~~~-~~~~----~~v~~--   90 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT---DILNYKN-GHIE----DQVMK--   90 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS---EEECGGG-SCHH----HHHHH--
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc---ccccccc-hhHH----HHHHH--
Confidence            77899999999986 6777777775 556899999999999888753    321   1111111 1110    11111  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                +.....+|+++.....   ...+++..++++|+|.+++.+..
T Consensus        91 ----------~t~g~G~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          91 ----------LTNGKGVDRVIMAGGG---SETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             ----------HTTTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             ----------HhhccCcceEEEccCC---HHHHHHHHHHHhcCCEEEEEeec
Confidence                      1134569999975533   35677788999999999996553

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.57  E-value=9.9e-05  Score=58.28  Aligned_cols=58  Identities=22%  Similarity=0.297  Sum_probs=49.2

Q ss_pred             hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      ..++..++.....+|+.|||..||+|..+.++...+ .+.+|+|+++...+.|++++..
T Consensus       194 ~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         194 AAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHH
Confidence            344555555556789999999999999999888886 6899999999999999999864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=0.00017  Score=53.70  Aligned_cols=105  Identities=17%  Similarity=0.252  Sum_probs=66.1

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-+|||. |..+..+++. +..+|+++|.++..++.+++.    |..   ..+...+. ...    +....  
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~-~~~----~~~~~--   91 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRET-SVE----ERRKA--   91 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTS-CHH----HHHHH--
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEEecccc-chH----HHHHH--
Confidence            56899999999875 6666666665 556899999999999988763    321   11211111 110    00000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                             +........+|+|+.....   ...++.+.+++++||.+++.+.
T Consensus        92 -------i~~~~~~~g~Dvvid~vG~---~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2          92 -------IMDITHGRGADFILEATGD---SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             -------HHHHTTTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             -------HHHhhCCCCceEEeecCCc---hhHHHHHHHHhcCCCEEEEEee
Confidence                   0111134569999864422   3467888899999999988654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.53  E-value=4.5e-05  Score=58.04  Aligned_cols=106  Identities=19%  Similarity=0.377  Sum_probs=69.4

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||.+|||. |..+..+++ .+..+|+++|.++..++.|++.    +..   . ........+.    ....   
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~---~-~~~~~~~~~~----~~i~---   87 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE---I-ADLSLDTPLH----EQIA---   87 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE---E-EETTSSSCHH----HHHH---
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc---E-EEeCCCcCHH----HHHH---
Confidence            78999999999997 556666665 4777999999999999988764    321   1 1111111110    0000   


Q ss_pred             hccccccccCCCCCCCeeEEEeccccc------------cHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLN------------PLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                               .+.....+|+++-.....            .....++.+.+.++|+|.+.+.+..
T Consensus        88 ---------~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          88 ---------ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             ---------HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             ---------HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence                     111345689999643211            1346899999999999999997653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.50  E-value=3.5e-05  Score=60.93  Aligned_cols=107  Identities=15%  Similarity=0.098  Sum_probs=73.2

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhC-----------------------------------------CCEEEEEeCChHHHHH
Q 047371           58 GGELFLDYGTGSGILGIAAIKFG-----------------------------------------AAMFVGVDIDPQVIKS   96 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~-----------------------------------------~~~v~gvD~s~~~l~~   96 (222)
                      .+..++|..||+|.+.+.++...                                         ...++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            34579999999999988765310                                         0146788999999988


Q ss_pred             H---HHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------
Q 047371           97 A---HQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------  161 (222)
Q Consensus        97 a---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------  161 (222)
                      |   +.|+...++. ..+.+...|.-....                 ..........++|++|||+..            
T Consensus       130 A~~~r~n~~~Agl~-~~i~i~~~d~f~~~~-----------------~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~  191 (249)
T d1o9ga_         130 ARRLRERLTAEGGA-LPCAIRTADVFDPRA-----------------LSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP  191 (249)
T ss_dssp             HHHHHHHHHHTTSS-CCEEEEECCTTCGGG-----------------HHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred             HHHHHHHHHHcCCC-ceeeeeecchhccCc-----------------chhccCCCCCCEEEeCCCccccccccccchHHH
Confidence            8   4578888886 467777776533210                 000113456799999999853            


Q ss_pred             HHHHHHHHHHcccCCeEEEEe
Q 047371          162 LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +.++...+.+.+.....++++
T Consensus       192 ~~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         192 VAGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHccCCCCcEEEEe
Confidence            456777888888766666665

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.42  E-value=0.00058  Score=50.41  Aligned_cols=101  Identities=16%  Similarity=0.247  Sum_probs=66.8

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++|+-+|||. |..+..+++ .+...++++|.++..++.+++.    +..    .+...+.+.+.    +....+ 
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~----~~i~~~~~~~~----~~i~~~-   92 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT----HVINSKTQDPV----AAIKEI-   92 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS----EEEETTTSCHH----HHHHHH-
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe----EEEeCCCcCHH----HHHHHH-
Confidence            67899999999876 345555554 4778899999999999988764    322    12222221111    111111 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                  ..+.+|+++-...   ....++.+.++++|+|.+++.+.
T Consensus        93 ------------t~gg~D~vid~~G---~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          93 ------------TDGGVNFALESTG---SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             ------------TTSCEEEEEECSC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             ------------cCCCCcEEEEcCC---cHHHHHHHHhcccCceEEEEEee
Confidence                        3457999996443   34677888999999999998654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=9.7e-05  Score=54.51  Aligned_cols=102  Identities=12%  Similarity=0.020  Sum_probs=64.3

Q ss_pred             hhcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           55 LIKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        55 ~~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++|++|+-+|+|. |..+..+++....+++++|.++..++.|++.    |..   ..+...+.....       ..  
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~-------~~--   87 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWG-------EK--   87 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHH-------HH--
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEeeccchHHHH-------Hh--
Confidence            378899999999984 6667767665336899999999999888763    322   112111111110       00  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                  ..+.+|+++...... ....+....++++|+|.+++.+..
T Consensus        88 ------------~~~~~d~vi~~~~~~-~~~~~~~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          88 ------------YFDTFDLIVVCASSL-TDIDFNIMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             ------------SCSCEEEEEECCSCS-TTCCTTTGGGGEEEEEEEEECCCC
T ss_pred             ------------hhcccceEEEEecCC-ccchHHHHHHHhhccceEEEeccc
Confidence                        345699888632221 111245678899999999986543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.27  E-value=0.00013  Score=54.28  Aligned_cols=106  Identities=18%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++|+-+|||. |..+..+++. +...|+++|.++..++.|++.    +..  . .+.....+..       .... 
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~--~-~i~~~~~~~~-------~~~~-   90 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT--D-CLNPRELDKP-------VQDV-   90 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--E-EECGGGCSSC-------HHHH-
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC--c-ccCCccchhh-------hhhh-
Confidence            77899999999988 7777777765 777899999999988888764    322  1 1111111100       0000 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCCCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGILSE  187 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~  187 (222)
                              ......+.+|+++-...   ....+++..+.++++ |.+++.+....
T Consensus        91 --------~~~~~~~G~d~vie~~G---~~~~~~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2          91 --------ITELTAGGVDYSLDCAG---TAQTLKAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             --------HHHHHTSCBSEEEESSC---CHHHHHHHHHTBCTTTCEEEECCCSSS
T ss_pred             --------HhhhhcCCCcEEEEecc---cchHHHHHHHHhhcCCeEEEecCCCCC
Confidence                    00003457899986442   356788999999996 99999766443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.24  E-value=0.0014  Score=48.00  Aligned_cols=103  Identities=14%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++|+-.|+|. |..+..+++ .+...++++|.++..++.+++.    +..    .+...+.+...        .. 
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~----~~i~~~~~~~~--------~~-   92 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD----HVVDARRDPVK--------QV-   92 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS----EEEETTSCHHH--------HH-
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc----eeecCcccHHH--------HH-
Confidence            57899999999987 455556655 5778999999999988888764    221    12222111110        00 


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                              ........+|+++.....   ...++...++++++|.+++.+...
T Consensus        93 --------~~~~~~~g~d~vid~~g~---~~~~~~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2          93 --------MELTRGRGVNVAMDFVGS---QATVDYTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             --------HHHTTTCCEEEEEESSCC---HHHHHHGGGGEEEEEEEEECCCSS
T ss_pred             --------HHhhCCCCceEEEEecCc---chHHHHHHHHHhCCCEEEEEeCcc
Confidence                    001134569999965433   456888999999999999976644

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.12  E-value=0.0011  Score=48.35  Aligned_cols=101  Identities=13%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++|+-+|+|. |..+..+++....+++++|.++..++.+++.    +..   . +.........    +.....  
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga~---~-~i~~~~~~~~----~~~~~~--   90 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GAS---L-TVNARQEDPV----EAIQRD--   90 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---E-EEETTTSCHH----HHHHHH--
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Ccc---c-cccccchhHH----HHHHHh--
Confidence            67899999999886 5666667765447999999999999888753    322   1 1211111110    000000  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                 ..+..+.+++..    -...++...++|+|+|.+++.+..
T Consensus        91 -----------~~g~~~~i~~~~----~~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          91 -----------IGGAHGVLVTAV----SNSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             -----------HSSEEEEEECCS----CHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             -----------hcCCcccccccc----cchHHHHHHHHhcCCcEEEEEEec
Confidence                       123344444322    245678889999999999986654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.97  E-value=0.00052  Score=50.84  Aligned_cols=104  Identities=15%  Similarity=0.103  Sum_probs=63.1

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++|+-+|||. |..+..+++ .+..+|+++|.++..++.|++.    +..   ..+...+.+...   ......  
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~---~~i~~~~~d~~~---~~~~~~--   92 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---ECLNPKDYDKPI---YEVICE--   92 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCH---HHHHHH--
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc---EEEcCCCchhHH---HHHHHH--
Confidence            78999999999987 345555555 4778999999999999999764    322   112111111000   000000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccC-CeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKP-GAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~  185 (222)
                                 ...+.+|+++....   ....+......+++ +|.+++.+..
T Consensus        93 -----------~~~~G~d~vid~~g---~~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2          93 -----------KTNGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             -----------HTTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             -----------hcCCCCcEEEEcCC---CchHHHHHHHHHHHhcCceEEEEEe
Confidence                       13457899986443   24556666666655 6898886553

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.96  E-value=0.0028  Score=45.90  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=62.4

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      ++++++||-.|+|+ |..+..+++....+++++|.++..++.+++.    +..   ......+ ..+.    ......  
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~---~~~~~~~-~~~~----~~~~~~--   90 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD---LVVNPLK-EDAA----KFMKEK--   90 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS---EEECTTT-SCHH----HHHHHH--
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc---eeccccc-chhh----hhcccc--
Confidence            77899999999988 4555566666556899999999998888663    332   1111111 1110    000010  


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                 ..+..|+|+ +..   -...+....++++|+|.+++.+..
T Consensus        91 -----------~~~~~~~v~-~~~---~~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          91 -----------VGGVHAAVV-TAV---SKPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             -----------HSSEEEEEE-SSC---CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             -----------cCCCceEEe-ecC---CHHHHHHHHHHhccCCceEecccc
Confidence                       123344443 332   356788999999999999996553

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.91  E-value=0.00044  Score=51.33  Aligned_cols=45  Identities=27%  Similarity=0.477  Sum_probs=37.0

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHH
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQN  100 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~  100 (222)
                      +++|++|+-+|||. |..+..+++. +..+|+++|.+++.++.|++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            67899999999987 4455555554 668999999999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00055  Score=50.16  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++|++|+-+|+|. |.++..+++.-..+++++|.++..++.+++.    +..   ..+...+....             
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~-------------   87 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEM-------------   87 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHH-------------
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CCc---EEEECchhhHH-------------
Confidence            78999999999876 6677777775446778999999888777653    321   11211111000             


Q ss_pred             ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS  186 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (222)
                               ....+.+|+++......   ..++...++++++|.+++.+...
T Consensus        88 ---------~~~~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          88 ---------AAHLKSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             ---------HTTTTCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECCCC-
T ss_pred             ---------HHhcCCCceeeeeeecc---hhHHHHHHHHhcCCEEEEeccCC
Confidence                     01345799998654322   33566778999999999976543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.89  E-value=0.00043  Score=50.78  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=66.3

Q ss_pred             hcCCCcEEEEccC-C-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTG-S-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G-~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      ++++++|+-+||+ . |..+..+++ .+...|+++|.++..++.+++.    |..   . ........+.    +   . 
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~-~i~~~~~~~~----~---~-   88 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---Y-VINASMQDPL----A---E-   88 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---E-EEETTTSCHH----H---H-
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---e-eeccCCcCHH----H---H-
Confidence            6789999999974 2 455555554 4668999999999988888763    321   1 1111111110    0   0 


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              .......+.+|+++....   -...++.+.++++|+|.+++.+..
T Consensus        89 --------~~~~~~~~~~d~vid~~g---~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          89 --------IRRITESKGVDAVIDLNN---SEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             --------HHHHTTTSCEEEEEESCC---CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             --------HHHHhhcccchhhhcccc---cchHHHhhhhhcccCCEEEEeccc
Confidence                    011113556999996442   356778889999999999987554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0004  Score=51.20  Aligned_cols=102  Identities=17%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ | .|..++.+++.-..++++++.+++..+.+++    .|..  .+ +...+ ..+.    +..    
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~--~v-i~~~~-~~~~----~~i----   89 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH--EV-FNHRE-VNYI----DKI----   89 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS--EE-EETTS-TTHH----HHH----
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc--cc-ccccc-ccHH----HHh----
Confidence            678999999996 3 3567777777644689999999888777764    3432  11 21111 1110    000    


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              ......+.+|+++....    ...++...++++|+|.++..+..
T Consensus        90 --------~~~t~~~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~G~~  129 (174)
T d1yb5a2          90 --------KKYVGEKGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVVGSR  129 (174)
T ss_dssp             --------HHHHCTTCEEEEEESCH----HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             --------hhhhccCCceEEeeccc----HHHHHHHHhccCCCCEEEEEecC
Confidence                    11114567999997542    35678888999999999986443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.78  E-value=0.0077  Score=47.79  Aligned_cols=73  Identities=18%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371           60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH  139 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (222)
                      .+|+|+.||.|.+..-+.+.|...+.++|+++.+.+..+.|..        -.....|...+...               
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~--------~~~~~~Di~~~~~~---------------   57 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS--------AKLIKGDISKISSD---------------   57 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC--------SEEEESCTTTSCGG---------------
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC--------CCCccCChhhCCHh---------------
Confidence            3699999999999888777788788899999988887776642        12445666554210               


Q ss_pred             cccCCCCCCCeeEEEecccccc
Q 047371          140 EIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       140 ~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                            ....+|+++..+|+..
T Consensus        58 ------~~~~~dll~~g~PCq~   73 (324)
T d1dcta_          58 ------EFPKCDGIIGGPPCQS   73 (324)
T ss_dssp             ------GSCCCSEEEECCCCTT
T ss_pred             ------HcccccEEeecccccc
Confidence                  2346899999988754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.47  E-value=0.018  Score=41.47  Aligned_cols=90  Identities=20%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             cEEEEccCC-C-HHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           61 LFLDYGTGS-G-ILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        61 ~vLD~G~G~-G-~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +|+=+|||. | .++..+.+.+ ..+|+|+|.++..++.|++.    +..    .....+....                
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~----~~~~~~~~~~----------------   58 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GII----DEGTTSIAKV----------------   58 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSC----SEEESCGGGG----------------
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcc----hhhhhhhhhh----------------
Confidence            477889886 3 4566666655 35899999999999988764    211    1111111111                


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              .....|+|+...+.....++++.+...++++..+.-.
T Consensus        59 --------~~~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          59 --------EDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             --------GGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             --------hccccccccccCCchhhhhhhhhhhcccccccccccc
Confidence                    2345799999888777888999999999998766654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.47  E-value=0.0087  Score=47.86  Aligned_cols=44  Identities=23%  Similarity=0.186  Sum_probs=39.0

Q ss_pred             CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371           58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA  101 (222)
Q Consensus        58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~  101 (222)
                      .+.+|+|+.||.|.++.-+.+.|...+.++|+++.+++..+.|.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence            46799999999999999888888878899999999999888775

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.09  E-value=0.0029  Score=46.68  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=66.3

Q ss_pred             hcCCCcEEEEccCCC--HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSG--ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G--~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|++.|  ..++.+++....+++++.-+++..+.+++.    +..   ..+...+.....     ....  
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~---~vi~~~~~~~~~-----~~~~--   92 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLE-----EALK--   92 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHH-----HHHH--
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh---hhcccccccHHH-----HHHH--
Confidence            678999998887663  566777776557999999999887777654    321   112222221110     0000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ....+.+|+|+-...    .+.++...++|+++|.++..+.
T Consensus        93 ----------~~~~~Gvd~v~D~vG----~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          93 ----------KASPDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             ----------HHCTTCEEEEEESSC----HHHHHHHGGGEEEEEEEEECCC
T ss_pred             ----------HhhcCCCceeEEecC----chhhhhhhhhccCCCeEEeecc
Confidence                      014557999986442    4678899999999999998653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.03  E-value=0.0043  Score=45.20  Aligned_cols=99  Identities=18%  Similarity=0.216  Sum_probs=62.4

Q ss_pred             hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~  132 (222)
                      +++|++||-.|||. |.+++.+++ .+...|+++|.++..++.+++.    |..  . .+...+. +...    ......
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~--~-~i~~~~~~~~~~----~~~~~~   94 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--E-CINPQDFSKPIQ----EVLIEM   94 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--E-EECGGGCSSCHH----HHHHHH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc--E-EEeCCchhhHHH----HHHHHH
Confidence            78999999999884 345555555 4778999999999998888764    322  1 1111111 1110    000000


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                                   ..+.+|+++....   -...++.+..++++||.+++
T Consensus        95 -------------~~~g~D~vid~~G---~~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 -------------TDGGVDYSFECIG---NVKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             -------------TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEE
T ss_pred             -------------cCCCCcEeeecCC---CHHHHHHHHHhhcCCceeEE
Confidence                         3457999997543   24677888889999877665

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.94  E-value=0.00099  Score=49.02  Aligned_cols=95  Identities=11%  Similarity=0.092  Sum_probs=60.3

Q ss_pred             hcCCCcEEEEcc-CC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ |. |..++.+++....++++++.++..++.+++    .|..  .+ +...+   ..       ..  
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~--~~-i~~~~---~~-------~~--   85 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE--EA-ATYAE---VP-------ER--   85 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS--EE-EEGGG---HH-------HH--
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc--ee-eehhh---hh-------hh--
Confidence            688999999885 33 567777777645689999999988877765    3432  11 11111   00       00  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ....+.+|+|+-...     ..++...++|+|+|.++..+.
T Consensus        86 ----------~~~~~g~D~v~d~~G-----~~~~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2          86 ----------AKAWGGLDLVLEVRG-----KEVEESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             ----------HHHTTSEEEEEECSC-----TTHHHHHTTEEEEEEEEEC--
T ss_pred             ----------hhccccccccccccc-----hhHHHHHHHHhcCCcEEEEeC
Confidence                      013456999986321     235678889999999998544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.91  E-value=0.0054  Score=44.82  Aligned_cols=102  Identities=20%  Similarity=0.161  Sum_probs=61.1

Q ss_pred             hcCCCcEEEEccCCC-HHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGSG-ILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G-~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++|+-.|+|.+ ..+..+++ .+..+|+++|.++...+.+++.    +..   ..+...+.+...   ......  
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~---~~~~~~--   93 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPI---QEVLTE--   93 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCH---HHHHHH--
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe---eEEecCCchhHH---HHHHHH--
Confidence            789999999999764 34444444 5778999999999999888765    221   111111111100   000000  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  183 (222)
                                 ...+.+|+++.....   ...++.+...++++ |.+++..
T Consensus        94 -----------~~~~G~D~vid~~G~---~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          94 -----------MSNGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             -----------HTTSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECS
T ss_pred             -----------HhcCCCCEEEecCCc---hhHHHHHHHHHhcCCcceEEec
Confidence                       145679999975433   35566677777776 5666643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.039  Score=42.77  Aligned_cols=88  Identities=16%  Similarity=0.107  Sum_probs=58.4

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++.+|-.|++.|.   ++..+++.| .+|+.++.++..++.+.+.+...+.. .++....+|..... +........++
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~Dls~~~-~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYP-GTLIPYRCDLSNEE-DILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEEECCTTCHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEEccCCCHH-HHHHHHHHHHH
Confidence            58899999988873   555666676 58999999999999988877766543 36667777775431 11111111111


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ..++.|+++.|...
T Consensus        86 -----------~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          86 -----------QHSGVDICINNAGL   99 (257)
T ss_dssp             -----------HHCCCSEEEECCCC
T ss_pred             -----------hcCCCCEEEecccc
Confidence                       34678999987643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0039  Score=45.64  Aligned_cols=100  Identities=16%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+|.  |..+..+++....++++++.++...+.+++.    |..   ..+...+ ..+.       ..  
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~-~d~~-------~~--   88 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVINYRE-EDLV-------ER--   88 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTT-SCHH-------HH--
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe---EEEECCC-CCHH-------HH--
Confidence            67899999987665  5677777776447999999999998888753    422   1122121 1111       11  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +..+.....+|+++....-    +.++.....++++|.+++..
T Consensus        89 -------v~~~t~g~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          89 -------LKEITGGKKVRVVYDSVGR----DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             -------HHHHTTTCCEEEEEECSCG----GGHHHHHHTEEEEEEEEECC
T ss_pred             -------HHHHhCCCCeEEEEeCccH----HHHHHHHHHHhcCCeeeecc
Confidence                   1112245679998865532    35677888999999988743

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.66  E-value=0.011  Score=43.62  Aligned_cols=99  Identities=12%  Similarity=0.073  Sum_probs=63.8

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .++|++||--|++.  |.+++.+++....+++++--++...+.+++.    +..   ..+...+. ..     +...   
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~---~vi~~~~~-~~-----~~~~---   92 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAK---EVLAREDV-MA-----ERIR---   92 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCS---EEEECC-----------------
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccc---eeeecchh-HH-----HHHH---
Confidence            45688999998665  4677888876557899999999888888753    322   11111110 00     0000   


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                ....+.+|+|+-+..    ...++...++|+|+|+++..+.
T Consensus        93 ----------~~~~~gvD~vid~vg----g~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          93 ----------PLDKQRWAAAVDPVG----GRTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             -----------CCSCCEEEEEECST----TTTHHHHHHTEEEEEEEEECSC
T ss_pred             ----------HhhccCcCEEEEcCC----chhHHHHHHHhCCCceEEEeec
Confidence                      114568999887553    2357788889999999998654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.64  E-value=0.0019  Score=47.59  Aligned_cols=100  Identities=16%  Similarity=0.149  Sum_probs=62.0

Q ss_pred             hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +++|++||-.|+ | .|..++.+++....+++++..+++..+.+++    .+..  .+ +. .....+.    +   .  
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~--~v-i~-~~~~~~~----~---~--   85 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE--YV-GD-SRSVDFA----D---E--   85 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS--EE-EE-TTCSTHH----H---H--
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc--cc-cc-CCccCHH----H---H--
Confidence            678999999874 2 2566666666544688888888877777664    3432  11 21 1111111    0   0  


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                             +........+|+++....    .+.++.+.++|+++|.++..+
T Consensus        86 -------v~~~t~~~g~d~v~d~~g----~~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          86 -------ILELTDGYGVDVVLNSLA----GEAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             -------HHHHTTTCCEEEEEECCC----THHHHHHHHTEEEEEEEEECS
T ss_pred             -------HHHHhCCCCEEEEEeccc----chHHHHHHHHhcCCCEEEEEc
Confidence                   111124567999997553    246777889999999999853

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.30  E-value=0.12  Score=36.82  Aligned_cols=87  Identities=13%  Similarity=0.084  Sum_probs=58.3

Q ss_pred             cEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           61 LFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        61 ~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      +|.=+|+|. | .++..+.+.+ -+|++.|.+++.++.+++.    +..    .....+.+                   
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g-~~V~~~d~~~~~~~~a~~~----~~~----~~~~~~~~-------------------   53 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVER----QLV----DEAGQDLS-------------------   53 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT----TSC----SEEESCGG-------------------
T ss_pred             EEEEEeecHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHh----hcc----ceeeeecc-------------------
Confidence            466678875 3 3555665555 5899999999888877653    221    11111111                   


Q ss_pred             ccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          139 HEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                             .....|+|+...|......+++++...++++..++-.
T Consensus        54 -------~~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          54 -------LLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             -------GGTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             -------cccccccccccCcHhhhhhhhhhhhhhcccccceeec
Confidence                   2345799998777777888999999999999877653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.047  Score=42.48  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=68.9

Q ss_pred             CCcEE-EEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           59 GELFL-DYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        59 ~~~vL-D~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      |++|. --|++.|.   ++..+++.+..+|+.++.+++.++.+.+.+...+.   ++.+..+|..... ++........+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~---~~~~~~~Dvs~~~-sv~~~~~~~~~   77 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL---SPRFHQLDIDDLQ-SIRALRDFLRK   77 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC---CCEEEECCTTCHH-HHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEEecCCHH-HHHHHHHHHHH
Confidence            67774 44555542   33445555457999999999999998888776653   5667777775542 11111122211


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                 ..++.|+++.|..+..                      .-.+.+.+...++++|.++..
T Consensus        78 -----------~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          78 -----------EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             -----------HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -----------hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence                       2467999999876422                      012467788888999987763

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.012  Score=46.99  Aligned_cols=77  Identities=13%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             CCcEEEEccCCCHHHHHHHHhCC--CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           59 GELFLDYGTGSGILGIAAIKFGA--AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        59 ~~~vLD~G~G~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ..+|+|++||.|.+..-+...|.  .-+.++|+++.+++..+.|..       .......|...+...      .+    
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-------~~~~~~~di~~~~~~------~~----   64 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-------HTQLLAKTIEGITLE------EF----   64 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-------TSCEECSCGGGCCHH------HH----
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-------CCCcccCchhhCCHh------Hc----
Confidence            45799999999998877666564  347899999988888776642       223444444433210      00    


Q ss_pred             ccccccCCCCCCCeeEEEecccccc
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP  161 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~  161 (222)
                               +...+|+++..+|+..
T Consensus        65 ---------~~~~~Dll~ggpPCq~   80 (343)
T d1g55a_          65 ---------DRLSFDMILMSPPCQP   80 (343)
T ss_dssp             ---------HHHCCSEEEECCC---
T ss_pred             ---------CCCCccEEEeeccccc
Confidence                     2235899999998765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.76  E-value=0.01  Score=43.09  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=35.1

Q ss_pred             hcCCCcEEEEccCCCH-HHHHHH-HhCCCEEEEEeCChHHHHHHHHH
Q 047371           56 IKGGELFLDYGTGSGI-LGIAAI-KFGAAMFVGVDIDPQVIKSAHQN  100 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G~-~~~~la-~~~~~~v~gvD~s~~~l~~a~~~  100 (222)
                      +++|++|+-+|+|.+. .+..++ ..+..+|+++|.++..++.+++.
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            7889999999998854 333333 45778999999999998888763

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.50  E-value=0.018  Score=41.97  Aligned_cols=96  Identities=15%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             CCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371           58 GGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL  136 (222)
Q Consensus        58 ~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  136 (222)
                      ++.+|+-+|+|. |..++..+..-.++|+++|.++..+++.+.....      ++.....+...+.        +     
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~------~~~~~~~~~~~l~--------~-----   91 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS------RVELLYSNSAEIE--------T-----   91 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHH--------H-----
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc------cceeehhhhhhHH--------H-----
Confidence            366899999998 6677766654347999999999999888765432      3333333221111        0     


Q ss_pred             ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEE
Q 047371          137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~  181 (222)
                               ....+|+|+....+..   ..-+-+++.+.+|||.+++=
T Consensus        92 ---------~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1          92 ---------AVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             ---------HHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             ---------hhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence                     2345899998654432   11134678889999987763

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.50  E-value=0.42  Score=33.89  Aligned_cols=118  Identities=18%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             CcEEEEccCCCH--HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           60 ELFLDYGTGSGI--LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        60 ~~vLD~G~G~G~--~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++|--+|+|...  ++..|++.+ .+|+..|.++..++..++.-.... ...............     ....+      
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~e------   68 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKG-QSVLAWDIDAQRIKEIQDRGAIIA-EGPGLAGTAHPDLLT-----SDIGL------   68 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHTSEEE-ESSSCCEEECCSEEE-----SCHHH------
T ss_pred             CEEEEECccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHcCCCch-hhhhhhhhhhhhhhh-----hhhHh------
Confidence            467778888743  455666676 589999999988877765321100 000111111100000     00000      


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE  198 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (222)
                              ....+|+|+...+-.....+++++..+++++..+++..-...........+..
T Consensus        69 --------~~~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~  121 (184)
T d1bg6a2          69 --------AVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRE  121 (184)
T ss_dssp             --------HHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHH
T ss_pred             --------HhcCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHH
Confidence                    12458999987766668889999999999998777643333334444444444

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.47  E-value=0.12  Score=40.27  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +|+++|-.|++.|.   ++..+++.| .+|+.+|.++..++.+.+.+...+....++.....|....
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~   68 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEA   68 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCH
Confidence            58889999988773   455666666 6899999999999998888877665545677888877554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.83  E-value=0.21  Score=38.37  Aligned_cols=60  Identities=13%  Similarity=0.235  Sum_probs=45.2

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +|+.+|-.|++.|.   ++..+++.+ .+|+.+|.+++.++.+.+.+...+.   ++.....|....
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~---~~~~~~~Dv~~~   66 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGV---EARSYVCDVTSE   66 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTS---CEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEccCCCH
Confidence            58899999987763   555666776 6899999999999998888776553   566677776543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.52  E-value=0.63  Score=31.44  Aligned_cols=93  Identities=15%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             cEEEEccCCCHHHHHHHH---hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           61 LFLDYGTGSGILGIAAIK---FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +|+-+|+  |.++..+++   .....|+.+|.++..++.+....        ...+..+|......     +...     
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~--------~~~vi~Gd~~~~~~-----l~~~-----   61 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI--------DALVINGDCTKIKT-----LEDA-----   61 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC--------SSEEEESCTTSHHH-----HHHT-----
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh--------hhhhccCcccchhh-----hhhc-----
Confidence            4555555  666665553   22368999999999888775531        23466777654421     1111     


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                              ....+|.+++-..-+...-++....+.+.+...+..
T Consensus        62 --------~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          62 --------GIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             --------TTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             --------ChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEE
Confidence                    445688888744333333345556666777755443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.26  E-value=0.069  Score=38.60  Aligned_cols=100  Identities=10%  Similarity=0.075  Sum_probs=61.7

Q ss_pred             hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .+++.+||--|++.  |..++.+++.-..+|+++.-+++..+.+++.    +..  .+ +...+   ...   ..     
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad--~v-i~~~~---~~~---~~-----   82 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS--EV-ISRED---VYD---GT-----   82 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS--EE-EEHHH---HCS---SC-----
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc--ce-Eeccc---hhc---hh-----
Confidence            44566788776433  4667777775347899999998888777654    332  11 11111   000   00     


Q ss_pred             hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                              ......+.+|+|+-..    -.+.+....++|+++|.+++.+..
T Consensus        83 --------~~~~~~~gvd~vid~v----gg~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          83 --------LKALSKQQWQGAVDPV----GGKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             --------CCSSCCCCEEEEEESC----CTHHHHHHHTTEEEEEEEEECCCS
T ss_pred             --------hhcccCCCceEEEecC----cHHHHHHHHHHhccCceEEEeecc
Confidence                    0011356799988643    235778899999999999986554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.18  Score=38.52  Aligned_cols=86  Identities=17%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .|+.+|-.|++.|   .++..+++.| .+|+.+|.+++.++...+.+...+   .++....+|...... +........+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs~~~~-v~~~~~~i~~   80 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNRED-IYSSAKKVKA   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHH-HHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHH-HHHHHHHHHH
Confidence            4888999999887   3666777777 689999999999998888877655   367777788765521 1111111111


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ..+..|+++.|...
T Consensus        81 -----------~~g~idilinnag~   94 (244)
T d1yb1a_          81 -----------EIGDVSILVNNAGV   94 (244)
T ss_dssp             -----------HTCCCSEEEECCCC
T ss_pred             -----------HcCCCceeEeeccc
Confidence                       35678999987654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.86  E-value=0.056  Score=39.62  Aligned_cols=101  Identities=15%  Similarity=0.191  Sum_probs=60.5

Q ss_pred             hcCC--CcEEEEcc--CCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371           56 IKGG--ELFLDYGT--GSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD  130 (222)
Q Consensus        56 ~~~~--~~vLD~G~--G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (222)
                      +++|  ++||-.|+  |.|..++.+++. +...|+++..+++......+.   .+.   ...+... .+.+.    +.  
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~ga---d~vi~~~-~~~~~----~~--   92 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGF---DAAVNYK-TGNVA----EQ--   92 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCC---SEEEETT-SSCHH----HH--
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccc---eEEeecc-chhHH----HH--
Confidence            4566  67988774  347889988885 666788888877665544332   232   1212211 11110    00  


Q ss_pred             cchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          131 GVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                                +... ..+.+|+++-...    .+.++...+.|+++|.++..+.
T Consensus        93 ----------~~~~-~~~GvDvv~D~vG----g~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          93 ----------LREA-CPGGVDVYFDNVG----GDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             ----------HHHH-CTTCEEEEEESSC----HHHHHHHHTTEEEEEEEEEC--
T ss_pred             ----------HHHH-hccCceEEEecCC----chhHHHHhhhccccccEEEecc
Confidence                      1111 2356999996542    4568889999999999998543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.81  E-value=0.21  Score=36.35  Aligned_cols=110  Identities=10%  Similarity=0.013  Sum_probs=58.9

Q ss_pred             hcCCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           56 IKGGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        56 ~~~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +++|.+++-+.+|+|   ..++.+++.-..+++++--++...+...+.++..|.. .-+.....+...+.    +.....
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad-~vi~~~~~~~~~~~----~~v~~~  100 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT-QVITEDQNNSREFG----PTIKEW  100 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS-EEEEHHHHHCGGGH----HHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc-EEEeccccchhHHH----HHHHHH
Confidence            678888888755554   4555666653357777755555555555555555643 11111111111110    000000


Q ss_pred             hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ..          ...+.+|+++-...    .+.+..+.+.|+|+|.++..+.
T Consensus       101 ~~----------~~g~~vdvv~D~vg----~~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         101 IK----------QSGGEAKLALNCVG----GKSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HH----------HHTCCEEEEEESSC----HHHHHHHHHTSCTTCEEEECCC
T ss_pred             Hh----------hccCCceEEEECCC----cchhhhhhhhhcCCcEEEEECC
Confidence            00          02356899985331    3456778899999999998654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.73  E-value=0.74  Score=35.09  Aligned_cols=59  Identities=12%  Similarity=0.071  Sum_probs=44.3

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.+++.++.+.+.+...+.   ++.+...|...
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~---~~~~~~~Dv~~   68 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGF---KVEASVCDLSS   68 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---EEEEEECCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC---CceEEEeeCCC
Confidence            5889999998876   3555666666 5899999999999988887766552   56667777644

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.68  E-value=0.55  Score=31.66  Aligned_cols=99  Identities=8%  Similarity=-0.005  Sum_probs=61.1

Q ss_pred             cCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCC
Q 047371           67 TGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGIS  145 (222)
Q Consensus        67 ~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (222)
                      ||.|..+..+++. ....++.+|.++...+.++.    .     .+.+..+|.....     .+...             
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~-----~~~~i~Gd~~~~~-----~L~~a-------------   58 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----S-----GANFVHGDPTRVS-----DLEKA-------------   58 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----T-----TCEEEESCTTSHH-----HHHHT-------------
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----c-----CccccccccCCHH-----HHHHh-------------
Confidence            6778888887763 34568899999988776543    2     3457777765431     11111             


Q ss_pred             CCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371          146 ETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRI  192 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (222)
                      .-.+++.+++...-+.....+-...+.+.|...++....-......+
T Consensus        59 ~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l  105 (129)
T d2fy8a1          59 NVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQL  105 (129)
T ss_dssp             TCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHH
T ss_pred             hhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHH
Confidence            45568888875544433344566667788887777754333333333

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.65  E-value=0.38  Score=36.61  Aligned_cols=86  Identities=13%  Similarity=0.125  Sum_probs=53.9

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +++.+|-.|++.|.   ++..+++.+ .+|+.+|.++..++.+.+.+...+.   ++.....|.....     ....+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~g~---~~~~~~~Dvt~~~-----~v~~~~~   79 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGY---ESSGYAGDVSKKE-----EISEVIN   79 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTC---CEEEEECCTTCHH-----HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEccCCCHH-----HHHHHHH
Confidence            57788888876662   333444455 6899999999999888887766543   5667777765431     1111111


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                      .-       ....++.|+++.|...
T Consensus        80 ~~-------~~~~g~iDilvnnag~   97 (251)
T d2c07a1          80 KI-------LTEHKNVDILVNNAGI   97 (251)
T ss_dssp             HH-------HHHCSCCCEEEECCCC
T ss_pred             HH-------HHhcCCceeeeecccc
Confidence            00       0134679999987654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.60  E-value=0.12  Score=40.01  Aligned_cols=63  Identities=13%  Similarity=0.093  Sum_probs=47.8

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +|+++|-.|++.|   .++..+++.| .+|+.+|.+++.++.+.+.+...+....++.....|....
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~   69 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTE   69 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCH
Confidence            5788888888776   3555666676 5899999999999999888877665445677778877543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.54  E-value=0.35  Score=37.13  Aligned_cols=59  Identities=17%  Similarity=0.124  Sum_probs=42.2

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +|+.+|-.|++.|.   ++..+++.+ .+|+.+|.++..++.+.+.+...    .++.+...|....
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~~~   66 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSP----DVISFVHCDVTKD   66 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCT----TTEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhcCC----CceEEEEccCCCH
Confidence            58899999988773   445566666 68999999999888877665432    2566667776443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.27  E-value=0.13  Score=39.58  Aligned_cols=63  Identities=10%  Similarity=0.096  Sum_probs=47.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +|+.+|-.|++.|   .++..+++.| .+|+.+|.+++.++.+.+.+...+....++.+...|....
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~   69 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTD   69 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCH
Confidence            5888888888876   3555666777 6899999999999998888877665545677888877543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.21  E-value=0.43  Score=36.33  Aligned_cols=86  Identities=14%  Similarity=0.142  Sum_probs=53.4

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH-hcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA-LNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +|+++|-.|++.|   .++..+++.| .+|+.+|.+++.++.+.+.+. ..+.   ++.....|..... ..........
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~g~---~~~~~~~Dv~~~~-~v~~~~~~~~   78 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGV---ETMAFRCDVSNYE-EVKKLLEAVK   78 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCC---CEEEEECCTTCHH-HHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHhCC---cEEEEEccCCCHH-HHHHHHHHHH
Confidence            5888999998876   3555666776 589999999998877766553 3332   5566667764431 0111111110


Q ss_pred             hccccccccCCCCCCCeeEEEecccc
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                      +           ..++.|+++.|...
T Consensus        79 ~-----------~~g~iDiLVnnAG~   93 (251)
T d1vl8a_          79 E-----------KFGKLDTVVNAAGI   93 (251)
T ss_dssp             H-----------HHSCCCEEEECCCC
T ss_pred             H-----------HcCCCCEEEECCCC
Confidence            0           24578999987653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.83  E-value=0.41  Score=32.38  Aligned_cols=90  Identities=14%  Similarity=0.157  Sum_probs=49.0

Q ss_pred             EEEEccCCCHHHHHHHH----hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           62 FLDYGTGSGILGIAAIK----FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        62 vLD~G~G~G~~~~~la~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      ++-+  |-|.++..+++    .+ .+|+.+|.++..++.++..    +     .....+|.....     .+...     
T Consensus         3 ~iIi--G~G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~~----~-----~~~~~gd~~~~~-----~l~~a-----   60 (134)
T d2hmva1           3 FAVI--GLGRFGGSIVKELHRMG-HEVLAVDINEEKVNAYASY----A-----THAVIANATEEN-----ELLSL-----   60 (134)
T ss_dssp             EEEE--CCSHHHHHHHHHHHHTT-CCCEEEESCHHHHHHTTTT----C-----SEEEECCTTCTT-----HHHHH-----
T ss_pred             EEEE--CCCHHHHHHHHHHHHCC-CeEEEecCcHHHHHHHHHh----C-----Ccceeeecccch-----hhhcc-----
Confidence            4444  44565555553    44 6799999999988877431    2     234556654331     11111     


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (222)
                              .-..+|.+++..+-+.-...+-.+.+.+.+...++.
T Consensus        61 --------~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          61 --------GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             --------TGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             --------CCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEe
Confidence                    334578887765544333444344444455556655

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.67  E-value=0.05  Score=41.90  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=31.8

Q ss_pred             CCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEe
Q 047371          146 ETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +++++|+|+.+||+..              +...+.++.+.|||+|.+++.
T Consensus        20 ~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_          20 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            7889999999999742              456789999999999999984

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.51  E-value=0.24  Score=40.68  Aligned_cols=51  Identities=12%  Similarity=0.007  Sum_probs=41.7

Q ss_pred             cCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcCCC
Q 047371           57 KGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNNIG  107 (222)
Q Consensus        57 ~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~  107 (222)
                      .++..++|+||-.|..+..++..   ...+|+++|.++...+..++++..+...
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            35679999999999988876543   2468999999999999999998876543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=1  Score=33.87  Aligned_cols=78  Identities=21%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      .|+++|-.|++.|   .++..+++.| .+|+.+|.++..++...+...       ++.....|....     +.....+ 
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~~~-------~~~~~~~Dv~d~-----~~v~~~~-   71 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECP-------GIEPVCVDLGDW-----EATERAL-   71 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHST-------TCEEEECCTTCH-----HHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcC-------CCeEEEEeCCCH-----HHHHHHH-
Confidence            5899999998877   3555666666 589999999988876655431       344556665433     1122221 


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                ...++.|+++.|...
T Consensus        72 ----------~~~g~iDilVnnAg~   86 (244)
T d1pr9a_          72 ----------GSVGPVDLLVNNAAV   86 (244)
T ss_dssp             ----------TTCCCCCEEEECCCC
T ss_pred             ----------HHhCCceEEEecccc
Confidence                      135679999987643

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.16  E-value=0.62  Score=37.54  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=31.6

Q ss_pred             CcEEEEccCCCHHHHHHHHh--------CCCEEEEEeCChHHHHHHHHHHH
Q 047371           60 ELFLDYGTGSGILGIAAIKF--------GAAMFVGVDIDPQVIKSAHQNAA  102 (222)
Q Consensus        60 ~~vLD~G~G~G~~~~~la~~--------~~~~v~gvD~s~~~l~~a~~~~~  102 (222)
                      ..|+|+|+|+|.++.-+.+.        ...+++.+|.|+...+.-++++.
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            47999999999988765432        23568999999976666555543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=91.06  E-value=0.06  Score=40.86  Aligned_cols=38  Identities=11%  Similarity=0.092  Sum_probs=31.5

Q ss_pred             CCCCeeEEEecccccc-----------------HHHHHHHHHHcccCCeEEEEec
Q 047371          146 ETEEYDVVIANILLNP-----------------LPQLADHIVSYAKPGAVVGISG  183 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~  183 (222)
                      +++++|+|+.+||+..                 +.+.++++.+.|+|+|.+++..
T Consensus        20 pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_          20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            7889999999999742                 3457889999999999988753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.06  E-value=0.75  Score=35.16  Aligned_cols=108  Identities=13%  Similarity=0.074  Sum_probs=65.5

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCC-hHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDID-PQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +|+++|-.|++.|.   ++..+++.| .+|+.+|.+ +..++.+.+.+...+.   ++.+...|...... .........
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~g~---~~~~~~~D~~~~~~-v~~~~~~~~   91 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGS---DAACVKANVGVVED-IVRMFEEAV   91 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTC---CEEEEECCTTCHHH-HHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHHHHHHHHHhhCC---ceeeEeCCCCCHHH-HHHHHHHHH
Confidence            58899999988773   555666676 688999886 5566666666655553   56666676644310 111111111


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                      +           ..++.|+++.|.....                      .-.+.+.+...++.+|.+++
T Consensus        92 ~-----------~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~  150 (272)
T d1g0oa_          92 K-----------IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLIL  150 (272)
T ss_dssp             H-----------HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             H-----------HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccc
Confidence            0           2456899988764321                      11246777777887877665

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.85  Score=34.55  Aligned_cols=89  Identities=19%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+.+|-.|++.|.   ++..+++.| .+|+.+|.+++.++.+...+....- ..++.+...|..... .........++
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~-~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFE-PQKTLFIQCDVADQQ-QLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSC-GGGEEEEECCTTSHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcC-CCcEEEEEeecCCHH-HHHHHHHHHHH
Confidence            48889999987762   455566666 6899999999998887776543221 136777777775542 11111111111


Q ss_pred             ccccccccCCCCCCCeeEEEeccccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLN  160 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~  160 (222)
                                 ..++.|+++.|....
T Consensus        79 -----------~~G~iDilVnnAg~~   93 (254)
T d2gdza1          79 -----------HFGRLDILVNNAGVN   93 (254)
T ss_dssp             -----------HHSCCCEEEECCCCC
T ss_pred             -----------HcCCcCeeccccccc
Confidence                       245789999876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.83  E-value=0.62  Score=35.35  Aligned_cols=85  Identities=12%  Similarity=0.107  Sum_probs=53.7

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.+++.++.+.+.+...    .++.+...|...... ........++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~-v~~~~~~~~~   78 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVGTP----DQIQFFQHDSSDEDG-WTKLFDATEK   78 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCT----TTEEEEECCTTCHHH-HHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhCCC----CcEEEEEccCCCHHH-HHHHHHHHHH
Confidence            5888888887776   2455566666 58999999999888877665321    367777777754321 1111111111


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ..++.|+++.|...
T Consensus        79 -----------~~G~iDiLVnnAg~   92 (251)
T d1zk4a1          79 -----------AFGPVSTLVNNAGI   92 (251)
T ss_dssp             -----------HHSSCCEEEECCCC
T ss_pred             -----------HhCCceEEEecccc
Confidence                       24678999987653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=1  Score=31.13  Aligned_cols=97  Identities=8%  Similarity=-0.031  Sum_probs=54.8

Q ss_pred             cEEEEccCCCHHHHHHHH---hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371           61 LFLDYGTGSGILGIAAIK---FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS  137 (222)
Q Consensus        61 ~vLD~G~G~G~~~~~la~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (222)
                      +++-+|+  |.++..+++   ....+++.+|.++.............     .+.+..+|.....     .+...     
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~-----~~~vi~Gd~~d~~-----~L~~a-----   67 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-----NADVIPGDSNDSS-----VLKKA-----   67 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-----TCEEEESCTTSHH-----HHHHH-----
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC-----CcEEEEccCcchH-----HHHHh-----
Confidence            4555555  555554443   22367999999987544433333222     4567888875542     11111     


Q ss_pred             cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371          138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (222)
                              .-+..|.+++...-+.....+-...+.+.|.-.++..
T Consensus        68 --------~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          68 --------GIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             --------TTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             --------ccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEE
Confidence                    4556888887554443333445556667777766664

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.75  E-value=0.47  Score=36.13  Aligned_cols=108  Identities=16%  Similarity=0.085  Sum_probs=64.6

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEE-EeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVG-VDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~g-vD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      .|+++|-.|++.|   .++..+++.+. +|+. ...++..++.+.+.+...+.   ++..+..|...... .........
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~---~~~~~~~D~~~~~~-v~~~~~~~~   79 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA---QGVAIQADISKPSE-VVALFDKAV   79 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC---CEEEEECCTTSHHH-HHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC---CceEecCCCCCHHH-HHHHHHHHH
Confidence            4888998886655   35555666664 5554 56777778888887776663   56677777654310 111111111


Q ss_pred             hccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEE
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGI  181 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~  181 (222)
                                 ...+..|+++.|....+                      .-.+.+.+...++.+|.+++
T Consensus        80 -----------~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~ii  138 (259)
T d1ja9a_          80 -----------SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIIL  138 (259)
T ss_dssp             -----------HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----------HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccc
Confidence                       13457999998765432                      11245677777777777665

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.74  E-value=0.35  Score=37.06  Aligned_cols=87  Identities=15%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+++|-.|++.|   .++..+++.| .+|+.+|.+++.++.+...+...+.. .++.....|..... ..........+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~~-~~~~~~~~Dvt~~~-~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPD-AEVLTTVADVSDEA-QVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTT-CCEEEEECCTTSHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCC-CeEEEEeccCCCHH-HHHHHHHHHHH
Confidence            5788999998877   3566677777 68999999999998887766544332 35667777765431 11111111111


Q ss_pred             ccccccccCCCCCCCeeEEEeccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                                 ..++.|+++.|..
T Consensus        80 -----------~~G~iDiLVnnAG   92 (258)
T d1iy8a_          80 -----------RFGRIDGFFNNAG   92 (258)
T ss_dssp             -----------HHSCCSEEEECCC
T ss_pred             -----------HhCCCCEEEECCc
Confidence                       2467899998754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=90.53  E-value=1.8  Score=29.84  Aligned_cols=98  Identities=11%  Similarity=0.071  Sum_probs=59.0

Q ss_pred             cEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           61 LFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        61 ~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      +|.=+|||+ |. +...+.+.+..+++..|.+++.++...+..   ++     ... .+..                   
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~---~~-----~~~-~~~~-------------------   53 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL---GV-----ETS-ATLP-------------------   53 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT---CC-----EEE-SSCC-------------------
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc---cc-----ccc-cccc-------------------
Confidence            456677766 32 333355556578999999998877665432   22     121 1111                   


Q ss_pred             ccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371          139 HEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS  197 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (222)
                             .-...|+|+..-.    ++.+..+.+-+++.+.++++....-....+.+.+.
T Consensus        54 -------~v~~~Div~lavk----P~~~~~v~~~l~~~~~~viS~~ag~~~~~l~~~l~  101 (152)
T d1yqga2          54 -------ELHSDDVLILAVK----PQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLG  101 (152)
T ss_dssp             -------CCCTTSEEEECSC----HHHHHHHHTTCCCTTCEEEECCTTCCHHHHHHHTT
T ss_pred             -------cccccceEEEecC----HHHHHHhHHHHhhcccEEeecccCCCHHHHHHHhC
Confidence                   2234799885432    34455566667777888888777777777776654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.50  E-value=0.95  Score=34.09  Aligned_cols=82  Identities=16%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.+++.++...+.+..      +......|..... .........++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~~~l~~~~~~~~~------~~~~~~~Dv~~~~-~v~~~~~~~~~   74 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQAISDYLGA------NGKGLMLNVTDPA-SIESVLEKIRA   74 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHGG------GEEEEECCTTCHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhCC------CCcEEEEEecCHH-Hhhhhhhhhhc
Confidence            5788888888776   3455566666 5899999999888877665432      4445566654331 01111111111


Q ss_pred             ccccccccCCCCCCCeeEEEeccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                                 ..++.|+++.|..
T Consensus        75 -----------~~g~iDilVnnAg   87 (243)
T d1q7ba_          75 -----------EFGEVDILVNNAG   87 (243)
T ss_dssp             -----------HTCSCSEEEECCC
T ss_pred             -----------ccCCcceehhhhh
Confidence                       3467999998754

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.38  E-value=0.68  Score=35.29  Aligned_cols=60  Identities=10%  Similarity=0.029  Sum_probs=44.8

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.++.++..++.+.+.+...+.   ++.+...|....
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~~~~~~~---~~~~~~~D~s~~   67 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGL---NVEGSVCDLLSR   67 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC---CceEEEeecCCH
Confidence            5899999998776   3455566666 5899999999999888887776653   466666776443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.97  E-value=0.6  Score=35.51  Aligned_cols=84  Identities=18%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             CCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           59 GELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        59 ~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      |+.+|-.|++.|.   ++..+++.+ .+|+.+|.+++.++.+.+.+...+.   ++.+...|..... ..........  
T Consensus         2 gKValITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~g~---~~~~~~~Dvs~~~-~v~~~~~~~~--   74 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGV---EADGRTCDVRSVP-EIEALVAAVV--   74 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTCHH-HHHHHHHHHH--
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEeecCCHH-HHHHHHHHHH--
Confidence            6667888877662   455566666 6899999999999988887776553   5667777765442 1111111111  


Q ss_pred             cccccccCCCCCCCeeEEEeccc
Q 047371          136 LSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                               ...++.|+++.|..
T Consensus        75 ---------~~~g~iDilVnnAG   88 (257)
T d2rhca1          75 ---------ERYGPVDVLVNNAG   88 (257)
T ss_dssp             ---------HHTCSCSEEEECCC
T ss_pred             ---------HHhCCCCEEEeccc
Confidence                     13567999998754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.93  E-value=1.6  Score=32.66  Aligned_cols=77  Identities=19%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.++..++...+...       ++.....|....     +.....+ 
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~-------~~~~~~~Dv~~~-----~~v~~~~-   69 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVSLAKECP-------GIEPVCVDLGDW-----DATEKAL-   69 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHST-------TCEEEECCTTCH-----HHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhcC-------CCeEEEEeCCCH-----HHHHHHH-
Confidence            5889998888776   2455566666 689999999887766654321       344566666443     1112221 


Q ss_pred             ccccccccCCCCCCCeeEEEeccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                                ...++.|+++.|..
T Consensus        70 ----------~~~g~iDilVnnAg   83 (242)
T d1cyda_          70 ----------GGIGPVDLLVNNAA   83 (242)
T ss_dssp             ----------TTCCCCSEEEECCC
T ss_pred             ----------HHcCCCeEEEECCc
Confidence                      13568999998754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.30  E-value=1.9  Score=32.48  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=50.7

Q ss_pred             EEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371           62 FLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS  138 (222)
Q Consensus        62 vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (222)
                      +|-.|++.|   .++..+++.| .+|+.+|.++..++.+.+.+...+.   ++.....|..... .........+     
T Consensus         4 alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~g~---~~~~~~~Dv~~~~-~v~~~~~~~~-----   73 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGG---HAVAVKVDVSDRD-QVFAAVEQAR-----   73 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTSHH-HHHHHHHHHH-----
T ss_pred             EEEcCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEeeCCCHH-HHHHHHHHHH-----
Confidence            466677665   2445566666 6899999999999988887766553   5666677765432 1111111111     


Q ss_pred             ccccCCCCCCCeeEEEeccc
Q 047371          139 HEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       139 ~~~~~~~~~~~~D~v~~~~~  158 (222)
                            ...++.|+++.|..
T Consensus        74 ------~~~g~iDilVnnAG   87 (255)
T d1gega_          74 ------KTLGGFDVIVNNAG   87 (255)
T ss_dssp             ------HHTTCCCEEEECCC
T ss_pred             ------HHhCCccEEEeccc
Confidence                  13467999998754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.12  E-value=0.54  Score=35.81  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=51.3

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCC-hHHHHHHHHHHHh-cCCCCCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDID-PQVIKSAHQNAAL-NNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s-~~~l~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +|+.+|-.|++.|.   ++..+++.| .+|+.++.+ +..++.+.+.+.. .+   .++.+...|..... .........
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~-~v~~~~~~~   77 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRAGLAAQHG---VKVLYDGADLSKGE-AVRGLVDNA   77 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHHHHHHHHT---SCEEEECCCTTSHH-HHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHHHHHHhcC---CcEEEEECCCCCHH-HHHHHHHHH
Confidence            57888888877763   555566676 589999986 5667666665543 33   25666777765431 111111111


Q ss_pred             hhccccccccCCCCCCCeeEEEecccc
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                      .           ...++.|+++.|...
T Consensus        78 ~-----------~~~G~iDiLVnnAG~   93 (260)
T d1x1ta1          78 V-----------RQMGRIDILVNNAGI   93 (260)
T ss_dssp             H-----------HHHSCCSEEEECCCC
T ss_pred             H-----------HHhCCCcEEEeeccc
Confidence            1           124678999987653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.43  Score=36.45  Aligned_cols=60  Identities=18%  Similarity=0.135  Sum_probs=43.5

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +|+++|-.|++.|.   ++..+++.| .+|+.+|.+++.++.+.+.+...+.   ++.+...|....
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~g~---~~~~~~~Dvs~~   72 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGG---QAFACRCDITSE   72 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC---cEEEEEccCCCH
Confidence            58889988877662   444555566 6899999999999988887776552   566667776543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=88.79  E-value=0.15  Score=39.77  Aligned_cols=37  Identities=14%  Similarity=0.164  Sum_probs=31.7

Q ss_pred             CCCCeeEEEecccccc-----------------HHHHHHHHHHcccCCeEEEEe
Q 047371          146 ETEEYDVVIANILLNP-----------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       146 ~~~~~D~v~~~~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                      +++++|+|+.+||+..                 +.+.+.++.+.|+++|.+++.
T Consensus        28 ~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          28 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            6789999999999742                 455789999999999999985

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=88.07  E-value=0.91  Score=36.61  Aligned_cols=19  Identities=11%  Similarity=0.116  Sum_probs=16.2

Q ss_pred             HHHHHHHHcccCCeEEEEe
Q 047371          164 QLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       164 ~~l~~~~~~LkpgG~l~~~  182 (222)
                      .+|+.=++-|+|||.+++.
T Consensus       190 ~FL~~Ra~ELv~GG~mvl~  208 (359)
T d1m6ex_         190 LFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             HHHHHHHHHBCTTCEEEEE
T ss_pred             HHHHHHHHHhcCCcEEEEE
Confidence            3788888899999999984

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.95  E-value=1.1  Score=33.97  Aligned_cols=83  Identities=14%  Similarity=0.066  Sum_probs=49.9

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+.+|-.|++.|   .++..+++.+ .+|+.+|.++..++.+.+.+.      .+..+...|..... .......... 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~-~~~~~~~~~~-   75 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQLAAELG------ERSMFVRHDVSSEA-DWTLVMAAVQ-   75 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHC------TTEEEECCCTTCHH-HHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhC------CCeEEEEeecCCHH-HHHHHHHHHH-
Confidence            5888998887766   3455566666 689999999988877765542      24445556654331 1111111111 


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                ...++.|+++.|...
T Consensus        76 ----------~~~g~iDilVnnAG~   90 (253)
T d1hxha_          76 ----------RRLGTLNVLVNNAGI   90 (253)
T ss_dssp             ----------HHHCSCCEEEECCCC
T ss_pred             ----------HHhCCCCeEEecccc
Confidence                      124678999987653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.74  E-value=0.7  Score=33.41  Aligned_cols=45  Identities=11%  Similarity=-0.076  Sum_probs=35.2

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL  103 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~  103 (222)
                      +++++|-.|++.|   .++..+++.+ .+|+.++.+++.++.+.+.+..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~   69 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDKAQAAADSVNK   69 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccchHHHHHHHHHHHh
Confidence            5889999987776   3555666676 6899999999999888776654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.69  E-value=1.5  Score=33.01  Aligned_cols=58  Identities=14%  Similarity=-0.003  Sum_probs=38.9

Q ss_pred             CCCcEEEEccCC--C---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           58 GGELFLDYGTGS--G---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        58 ~~~~vLD~G~G~--G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      +|+++|-.|+++  |   .++..+++.| .+|+..+.++...+.+++.....+    +..+...|...
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~~   69 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRPEAEKLAEALG----GALLFRADVTQ   69 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHTT----CCEEEECCTTC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHhhhccC----cccccccccCC
Confidence            588999999754  4   2555666676 579999999887777766554433    33455566543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=87.63  E-value=1.4  Score=33.20  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=29.7

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHH
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAH   98 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~   98 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.+++..+.++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~   46 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGKEVAE   46 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
Confidence            5889999997776   2455566666 68999999987765544

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.86  E-value=1.4  Score=33.43  Aligned_cols=57  Identities=14%  Similarity=0.091  Sum_probs=40.3

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF  121 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~  121 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.+++.++...+.+   +   .++.+...|....
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dv~~~   63 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATAREL---G---DAARYQHLDVTIE   63 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTT---G---GGEEEEECCTTCH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh---C---CceEEEEcccCCH
Confidence            5889999998887   3555666676 58999999998776655443   2   2566777776543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.90  E-value=1.7  Score=32.53  Aligned_cols=42  Identities=26%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHH
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQN  100 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~  100 (222)
                      +++++|-.|++.|.   ++..+++.+ .+|+.+|.++..++.+.+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r~~~~l~~~~~~   48 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEEGPLREAAEA   48 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
Confidence            58889999988772   455566666 5899999999888777653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=85.90  E-value=2.9  Score=31.13  Aligned_cols=106  Identities=15%  Similarity=0.073  Sum_probs=63.4

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+.+|-.|++.|   .++..+++.+ .+|+.++.+...++...+.+   +   .++.+...|..... +.........+
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dls~~~-~i~~~~~~i~~   75 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAVAAL---E---AEAIAVVADVSDPK-AVEAVFAEALE   75 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC---C---SSEEEEECCTTSHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHc---C---CceEEEEecCCCHH-HHHHHHHHHHH
Confidence            5888999998876   3555566666 68999999998776554432   2   25666677764432 11111111100


Q ss_pred             ccccccccCCCCCCCeeEEEecccccc----------------------HHHHHHHHHHcccCCeEEEEe
Q 047371          135 YLSSHEIRGISETEEYDVVIANILLNP----------------------LPQLADHIVSYAKPGAVVGIS  182 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~  182 (222)
                                 ..++.|+++.|.....                      .-.+.+.+...++.++.+++.
T Consensus        76 -----------~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~  134 (241)
T d2a4ka1          76 -----------EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT  134 (241)
T ss_dssp             -----------HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             -----------HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeec
Confidence                       2357899998764322                      111356666777777776664

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.77  E-value=2.1  Score=32.25  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=51.8

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.+++.++.+.+.+   +   .++.....|..... .+.......++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~---~---~~~~~~~~Dvt~~~-~v~~~~~~~~~   75 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAAEI---G---PAACAIALDVTDQA-SIDRCVAELLD   75 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHHHHHHHHHH---C---TTEEEEECCTTCHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh---C---CceEEEEeeCCCHH-HHHHHHHHHHH
Confidence            5888999998876   3455566666 68999999998877765543   2   25566677765431 11111111111


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ..++.|+++.|...
T Consensus        76 -----------~~g~iDilVnnAg~   89 (256)
T d1k2wa_          76 -----------RWGSIDILVNNAAL   89 (256)
T ss_dssp             -----------HHSCCCEEEECCCC
T ss_pred             -----------HhCCccEEEeeccc
Confidence                       24678999987654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.72  E-value=1.2  Score=34.31  Aligned_cols=86  Identities=19%  Similarity=0.191  Sum_probs=52.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+++|-.|++.|   .++..+++.| .+|+.+|.++..++.+.+.+....-  .++.....|...... ........  
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~-v~~~~~~~--   97 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDM-VQNTVSEL--   97 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHH-HHHHHHHH--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHH-HHHHhhhh--
Confidence            4788999988776   3455566666 6899999999988877665543221  255566666644311 11111111  


Q ss_pred             ccccccccCCCCCCCeeEEEeccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                               ....+..|+++.|..
T Consensus        98 ---------~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          98 ---------IKVAGHPNIVINNAA  112 (294)
T ss_dssp             ---------HHHTCSCSEEEECCC
T ss_pred             ---------hhhccccchhhhhhh
Confidence                     013567899998754

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.52  E-value=1.7  Score=31.01  Aligned_cols=96  Identities=11%  Similarity=0.040  Sum_probs=57.3

Q ss_pred             CCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371           58 GGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY  135 (222)
Q Consensus        58 ~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  135 (222)
                      ++.+||-.|+..  |..++.+++.-..+++++.-+++..+.+++.    +..   ..+...+. ..       ...+   
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Gad---~vi~~~~~-~~-------~~~l---   92 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GAS---RVLPRDEF-AE-------SRPL---   92 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TEE---EEEEGGGS-SS-------CCSS---
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----ccc---cccccccH-HH-------HHHH---
Confidence            345777665332  3566667766457899999999888777653    221   11111111 00       0111   


Q ss_pred             cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371          136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL  185 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (222)
                                ....+|.++-. ..   ...+....+.++++|.++..+..
T Consensus        93 ----------~~~~~~~vvD~-Vg---g~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2          93 ----------EKQVWAGAIDT-VG---DKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             ----------CCCCEEEEEES-SC---HHHHHHHHHTEEEEEEEEECCCT
T ss_pred             ----------HhhcCCeeEEE-cc---hHHHHHHHHHhccccceEeeccc
Confidence                      34557877632 22   35688899999999999986543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=85.28  E-value=4.1  Score=30.23  Aligned_cols=83  Identities=11%  Similarity=0.115  Sum_probs=51.0

Q ss_pred             EEEEccCCC---HHHHHHHHhCCC------EEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371           62 FLDYGTGSG---ILGIAAIKFGAA------MFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        62 vLD~G~G~G---~~~~~la~~~~~------~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      ||-.|++.|   .++..+++.|..      .++.++.++..++...+.+...+.   ++.+...|..... .+.......
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~---~~~~~~~Dvt~~~-~v~~~~~~~   79 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA---LTDTITADISDMA-DVRRLTTHI   79 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC---EEEEEECCTTSHH-HHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC---cEEEEEecCCCHH-HHHHHHHHH
Confidence            456677776   245556666643      489999999999888877765552   5666777765442 111111111


Q ss_pred             hhccccccccCCCCCCCeeEEEecccc
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                      .+           ..++.|+++.|...
T Consensus        80 ~~-----------~~g~iDilvnnAg~   95 (240)
T d2bd0a1          80 VE-----------RYGHIDCLVNNAGV   95 (240)
T ss_dssp             HH-----------HTSCCSEEEECCCC
T ss_pred             HH-----------HcCCcceeeccccc
Confidence            11           35679999987653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=1.6  Score=33.90  Aligned_cols=88  Identities=16%  Similarity=0.142  Sum_probs=54.1

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC--CCceeEEecCCcccccccccccccc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG--PKKIKLHLVPDRTFTASMNERVDGV  132 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~  132 (222)
                      +|+.+|-.|++.|.   ++..+++.| .+|+.+|.++..++.+.+.+......  ..++.....|...... ........
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~G-a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~-v~~~~~~~   88 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEE-VNNLVKST   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHH-HHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHH-HHHHHHHH
Confidence            58889999888772   445566666 58999999999988877666532211  1356677777654311 11111111


Q ss_pred             hhccccccccCCCCCCCeeEEEeccc
Q 047371          133 VEYLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                      .+           ..++.|+++.|..
T Consensus        89 ~~-----------~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LD-----------TFGKINFLVNNGG  103 (297)
T ss_dssp             HH-----------HHSCCCEEEECCC
T ss_pred             HH-----------HhCCeEEEEeecc
Confidence            10           2457899998764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.63  E-value=0.78  Score=34.87  Aligned_cols=86  Identities=12%  Similarity=0.017  Sum_probs=52.8

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH-hcCCCCCceeEEecCCcccccccccccccch
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA-LNNIGPKKIKLHLVPDRTFTASMNERVDGVV  133 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (222)
                      +|+++|-.|++.|   .++..+++.| .+|+.+|.++..++.+.+.+. ..+   .++.....|..... ..........
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~-~v~~~~~~~~   82 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFG---VKTKAYQCDVSNTD-IVTKTIQQID   82 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHHHHHHHT---CCEEEEECCTTCHH-HHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHhC---CceEEEEccCCCHH-HHHHHHHHHH
Confidence            5888999997776   2455666666 689999999887766655443 333   25666777765431 1111111111


Q ss_pred             hccccccccCCCCCCCeeEEEecccc
Q 047371          134 EYLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ...++.|+++.|...
T Consensus        83 -----------~~~g~iDilVnnAg~   97 (260)
T d1h5qa_          83 -----------ADLGPISGLIANAGV   97 (260)
T ss_dssp             -----------HHSCSEEEEEECCCC
T ss_pred             -----------HHhCCCcEecccccc
Confidence                       135689999987653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=84.55  E-value=3.6  Score=30.45  Aligned_cols=47  Identities=19%  Similarity=0.083  Sum_probs=34.8

Q ss_pred             CCCcEEEEccCC--C---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371           58 GGELFLDYGTGS--G---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN  105 (222)
Q Consensus        58 ~~~~vLD~G~G~--G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~  105 (222)
                      +|+++|-.|+++  |   .++..+++.| .+|+.++.++...+.+.+.....+
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G-~~V~i~~~~~~~~~~~~~~~~~~~   55 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLKGRVEEFAAQLG   55 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSTTTHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHhhcC
Confidence            588999998876  5   2556677776 579999999887777776655544

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=1.1  Score=33.98  Aligned_cols=81  Identities=20%  Similarity=0.155  Sum_probs=50.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.+++.++...+...       +..+...|..... .......... 
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~~~-------~~~~~~~Dvs~~~-~v~~~~~~~~-   74 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELP-------GAVFILCDVTQED-DVKTLVSETI-   74 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT-------TEEEEECCTTSHH-HHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhcC-------CCeEEEccCCCHH-HHHHHHHHHH-
Confidence            5889999998877   3455566666 689999999988877665431       4556666764431 1111111111 


Q ss_pred             ccccccccCCCCCCCeeEEEeccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANIL  158 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~  158 (222)
                                ...++.|+++.|..
T Consensus        75 ----------~~~g~iDilVnnAG   88 (250)
T d1ydea1          75 ----------RRFGRLDCVVNNAG   88 (250)
T ss_dssp             ----------HHHSCCCEEEECCC
T ss_pred             ----------HhcCCCCEEEeccc
Confidence                      12367899998764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=2.2  Score=32.25  Aligned_cols=59  Identities=12%  Similarity=0.076  Sum_probs=42.7

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR  119 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~  119 (222)
                      +|+++|-.|+++|   .++..+++.| .+|+.++.+++.++.+.+.......  ..+.....+..
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r~~~~l~~~~~~~~~~~~--~~~~~~~~d~~   74 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGA--ASAHYIAGTME   74 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTC--SEEEEEECCTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHhhhhc--ccchhhhhhhh
Confidence            5899999999988   3566677776 6899999999999888776544332  24555555543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.97  E-value=1.7  Score=32.62  Aligned_cols=83  Identities=20%  Similarity=0.099  Sum_probs=51.5

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+++|-.|++.|   .++..+++.+ .+|+.+|.++..++.+.+.+.      .+..+...|..... ..........+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dv~~~~-~v~~~~~~~~~   76 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKAMAAELA------DAARYVHLDVTQPA-QWKAAVDTAVT   76 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTG------GGEEEEECCTTCHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhh------CcceEEEeecCCHH-HHHHHHHHHHH
Confidence            5888999998877   3555566666 589999999988877765542      24556667664431 11111111110


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ..++.|+++.|...
T Consensus        77 -----------~~g~idilinnAG~   90 (244)
T d1nffa_          77 -----------AFGGLHVLVNNAGI   90 (244)
T ss_dssp             -----------HHSCCCEEEECCCC
T ss_pred             -----------HhCCCeEEEECCcc
Confidence                       23568999987653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=81.75  E-value=3.5  Score=30.73  Aligned_cols=84  Identities=13%  Similarity=0.066  Sum_probs=48.6

Q ss_pred             CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371           58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE  134 (222)
Q Consensus        58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  134 (222)
                      +|+.+|-.|++.|   .++..+++.| .+|+.+|.++..  .+...+...+   .++.....|..... .........++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~--~~~~~~~~~g---~~~~~~~~Dvs~~~-~v~~~~~~~~~   76 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAP--EAEAAIRNLG---RRVLTVKCDVSQPG-DVEAFGKQVIS   76 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCH--HHHHHHHHTT---CCEEEEECCTTCHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchH--HHHHHHHHcC---CcEEEEEeeCCCHH-HHHHHHHHHHH
Confidence            5888888887776   3455566666 589999997642  2333333333   25667777765431 11111111111


Q ss_pred             ccccccccCCCCCCCeeEEEecccc
Q 047371          135 YLSSHEIRGISETEEYDVVIANILL  159 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~D~v~~~~~~  159 (222)
                                 ..++.|+++.|...
T Consensus        77 -----------~~G~iDilVnnAG~   90 (247)
T d2ew8a1          77 -----------TFGRCDILVNNAGI   90 (247)
T ss_dssp             -----------HHSCCCEEEECCCC
T ss_pred             -----------HcCCCCEEEECCCC
Confidence                       24578999987653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=80.47  E-value=0.61  Score=32.40  Aligned_cols=37  Identities=5%  Similarity=0.007  Sum_probs=30.8

Q ss_pred             CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371          148 EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI  184 (222)
Q Consensus       148 ~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (222)
                      ..+|+++....-+...+.++.+...+.++..++....
T Consensus        62 ~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          62 ATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             HTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEECS
T ss_pred             cccceEEEeecccchHHHHHhhccccCcccEEeeccC
Confidence            4689999877777788999999999999988877543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.28  E-value=2.9  Score=31.51  Aligned_cols=59  Identities=12%  Similarity=0.094  Sum_probs=44.4

Q ss_pred             CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371           58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT  120 (222)
Q Consensus        58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~  120 (222)
                      +|+++|-.|++.|.   ++..+++.+ .+|+.+|.++..++.+.+.+...+.   ++.....|...
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~~~---~~~~~~~Dv~~   68 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGF---QVTGSVCDASL   68 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC---ceEEEeccCCC
Confidence            58899999988773   555666776 5899999999999888777765542   56677777654