Citrus Sinensis ID: 047411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MDADLCAILYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHHHHHHHHHHHccccccEEEEccccEEEEEEEEEEcccccccEEEEEccEEEcccccccccccccccEEEEEcccEEEEEEcEEEEccccccccccccccccccccccccEEEEEEEEccEEEEcEEEEcccccEEEEEcEEcEEEEEEEEEccccccccccEEccccccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccccEEEEHccccccccccccHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHcccccccEEEEEEEEccEEEEEcEEEcccccHHHcccccccccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
MDADLCAILYFLYLISTASIrinadefnvldfgaagdgnadDSMAFIKAWNNtcsataksptmvipkgktflvhpitftgpckssditimlsgsiiapngpnewkeddkskwfdiqsvdslqidgsgtidgrgkAWWDISCkinkkegcvklaptvlkfdrcnnlrmnnmnfinspqthVTVMGCIGVEfgflsiqapgtspntdgihiqassnvyihnahisngt
Flexible Loop (DISEMBL)
MDADLCAILYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVdslqidgsgtidgRGKAWWDISCKInkkegcvklaptvLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHnahisngt
Low Complexity Region (SEG)
MDADLCAILYFLYLISTASIRINADEFNVLDFgaagdgnaddSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCnnlrmnnmnfinSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT
Disordered region (IsUnstruct)
***DLCAILYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWK**DKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGT***TDGIHIQASSNVYIHN*******
Disordered Region (DISOPRED)
**ADLCAILYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT
Disordered Region (DISEMBL)
MDADLCAILYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT
Disordered Region (DISPRO)
*DADLCAILYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDADLCAILYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q94AJ5	444	Probable polygalacturonas	yes	no	0.867	0.441	0.417	2e-43
Q9SFB7	439	Polygalacturonase QRT2 OS	no	no	0.884	0.455	0.409	4e-39
O23147	431	Polygalacturonase ADPG1 O	no	no	0.929	0.487	0.410	4e-39
Q9LW07	456	Probable polygalacturonas	no	no	0.876	0.434	0.391	1e-38
P48978	460	Polygalacturonase OS=Malu	N/A	no	0.867	0.426	0.420	3e-38
P35336	467	Polygalacturonase OS=Acti	N/A	no	0.849	0.411	0.429	5e-38
Q949Z1	475	Polygalacturonase At1g481	no	no	0.867	0.412	0.375	5e-36
Q02096	462	Polygalacturonase OS=Pers	N/A	no	0.858	0.419	0.38	1e-35
Q8RY29	433	Polygalacturonase ADPG2 O	no	no	0.849	0.443	0.386	4e-33
P05117	457	Polygalacturonase-2 OS=So	N/A	no	0.853	0.422	0.42	2e-32

>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 122/199 (61%), Gaps = 3/199 (1%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSD 86
            +V +FGA G+G  DD+ AF  AW   CS+  K+  +++P+  T L+ PI  +GPCK+  
Sbjct: 53  LHVGNFGAKGNGVTDDTKAFADAWKTACSSKVKT-RILVPENYTCLLRPIDLSGPCKAR- 110

Query: 87  ITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKK 146
           +T+ +SG+IIAPN P+ W+  ++ KW     +  L ++G GT++G G+ WW+ SCK N  
Sbjct: 111 LTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHS 170

Query: 147 EGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDG 206
             C + APT L F +C N+R+ N+N I+S Q H+ +  C  V    L + AP TSPNTDG
Sbjct: 171 NPC-RGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDG 229

Query: 207 IHIQASSNVYIHNAHISNG 225
           IHI  S  + I N  +S G
Sbjct: 230 IHISVSRGIVIDNTTVSTG 248

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 5/205 (2%)

Query: 21  RINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTG 80
           R +   FNV  FGA  +GN DDS AF+KAW   CS+T     +V PK + +++  +TF+G
Sbjct: 65  RSSPRSFNVNTFGAKANGN-DDSKAFMKAWEAACSSTGIV-YIVAPKNRDYMLKAVTFSG 122

Query: 81  PCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDIS 140
           PCKSS I   + G I A   P+++KE  +  W   ++V++L+++G G IDG G  WW  S
Sbjct: 123 PCKSSLIIFKIYGRIEAWENPSDYKE--RRHWIVFENVNNLRVEGGGRIDGNGHIWWPKS 180

Query: 141 CKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGT 200
           CKIN +  C+  APT + F  CNNLR++N+   N+ Q H+T   C  V+   L + +P  
Sbjct: 181 CKINPQLPCLG-APTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPAD 239

Query: 201 SPNTDGIHIQASSNVYIHNAHISNG 225
           SPNTDGIH+  + N+ I ++ +  G
Sbjct: 240 SPNTDGIHVSGTQNILIQDSIVRTG 264

Polygalacturonase required for cell type-specific pectin degradation to separate microspores. Involved in anther dehiscence and floral organ abscission.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/217 (41%), Positives = 124/217 (57%), Gaps = 7/217 (3%)

Query: 11  FLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKT 70
            L LIS+    + A   +V +FGA GDG  DD+ AF KAW   CS T    T ++PKGKT
Sbjct: 52  VLSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACS-TNGVTTFLVPKGKT 110

Query: 71  FLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDG--SGT 128
           +L+    F GPCKS      + G++ A    +++K  DK+ W  ++ V++L IDG  +G 
Sbjct: 111 YLLKSTRFRGPCKSLR-NFQILGTLSASTKRSDYK--DKNHWLILEDVNNLSIDGGSTGI 167

Query: 129 IDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGV 188
           I+G GK WW  SCKI+K + C K APT L      NL + N+   N+ Q  +++  C  V
Sbjct: 168 INGNGKTWWQNSCKIDKSKPCTK-APTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKV 226

Query: 189 EFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           E   + I APG SPNTDGIHI  + N+ + N+ I  G
Sbjct: 227 EVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTG 263

Polygalacturonase involved in cell separation in the final stages of pod shatter and in anther dehiscence. Not involved in floral organ abscission.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 19/217 (8%)

Query: 9   LYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKG 68
           L+FL + +++      +  +V  FGA GDG  DDS AF+KAW   CS T      V+P G
Sbjct: 12  LFFLQIFTSS------NALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDG-QFVVPAG 64

Query: 69  KTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGT 128
            TF++ P+ F G CKS+ + + + G ++AP+  N WK  DK +W     ++ L I+G G 
Sbjct: 65  MTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGN-WK-GDKDQWILFTDIEGLVIEGDGE 122

Query: 129 IDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGV 188
           I+G+G +WW+        +G     PT LKF  CNNLR++ +  ++SP  H+ +  C  V
Sbjct: 123 INGQGSSWWE-------HKGS---RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYV 172

Query: 189 EFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
               L I AP +SPNTDGI + ASSNV I +  I+ G
Sbjct: 173 TISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATG 209

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 123/202 (60%), Gaps = 6/202 (2%)

Query: 24  ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCK 83
           A   +V DFGA G+G ADD+ AF+KAW   CS++  +  +V+P+ K +LV PI F+GPCK
Sbjct: 96  AKTISVDDFGAKGNG-ADDTQAFVKAWKAACSSSG-AMVLVVPQ-KNYLVRPIEFSGPCK 152

Query: 84  SSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKI 143
           S  +T+ + G+I A    + +K+ D   W    +V +L + G GTI+G G  WW  SCKI
Sbjct: 153 S-QLTLQIYGTIEASEDRSIYKDIDH--WLIFDNVQNLLVVGPGTINGNGNIWWKNSCKI 209

Query: 144 NKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPN 203
             +  C   APT + F+RCNNL + N+N  ++ Q HV    CI V+   L++ AP  SPN
Sbjct: 210 KPQPPCGTYAPTAVTFNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASCLTVTAPEDSPN 269

Query: 204 TDGIHIQASSNVYIHNAHISNG 225
           TDGIH+  + N+ I ++ I  G
Sbjct: 270 TDGIHVTNTQNITISSSVIGTG 291

Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.

Malus domestica (taxid: 3750)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 125/198 (63%), Gaps = 6/198 (3%)

Query: 28  NVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDI 87
           NV DFGA GDG  DD+ AF KAW   CS+T+ S  +++PK K +LV PI+F+GPCKS  +
Sbjct: 91  NVDDFGAKGDGR-DDTKAFEKAWKAACSSTS-SAVLLVPK-KNYLVRPISFSGPCKSG-L 146

Query: 88  TIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKE 147
           T+ + G+I A +  +++++D +  W    SV +L+++G GTI+G GK WW  SCK NK  
Sbjct: 147 TMQIYGTIEASDDRSDYRKDGR-HWLVFDSVQNLRVEGGGTINGNGKIWWQNSCKTNKAL 205

Query: 148 GCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGI 207
            C K APT L F +  ++ + N+   N+ Q HV+   C+ V+   L + AP  SPNTDGI
Sbjct: 206 PC-KDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGI 264

Query: 208 HIQASSNVYIHNAHISNG 225
           H+  + N++I +  I  G
Sbjct: 265 HVTGTQNIHISSCVIGTG 282

Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.

Actinidia deliciosa (taxid: 3627)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 118/205 (57%), Gaps = 9/205 (4%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSD 86
           F+V  FGA GDG+ DD+ AF  AW   C+   +S  ++ P+G  F +    F+GPCK   
Sbjct: 80  FDVTSFGAVGDGSCDDTAAFQDAWKAACAV--ESGVVLAPEGGVFKITSTIFSGPCKPG- 136

Query: 87  ITIMLSGSIIAPNGPNEWKE-DDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINK 145
           +   L G ++ P+GP EW E D+K++W     +D     G GT++G G+ WWD+ CK ++
Sbjct: 137 LVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHR 196

Query: 146 -KEGCVK----LAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGT 200
             +G        +PT+++F   NN+ +  +   NSPQ H+   GC GV    + I +P  
Sbjct: 197 GPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKL 256

Query: 201 SPNTDGIHIQASSNVYIHNAHISNG 225
           SPNTDGIH+  + +V I+N+ +SNG
Sbjct: 257 SPNTDGIHLGNTRSVGIYNSVVSNG 281

Polygalacturonase not involved in the final stages of pod shatter.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 26  EFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSS 85
           + +V DFGA GDG  DD+ AF KAW + CS+ +    +++P+ K +L+  ITF+GPCKS 
Sbjct: 84  DISVDDFGARGDG-TDDTKAFEKAWKDACSSGS---VLIVPENKNYLLKQITFSGPCKS- 138

Query: 86  DITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINK 145
           D+ + + G+I A +  ++W   ++ +W + + + +L ++G GT +G G+ WWD SCK  K
Sbjct: 139 DLRVKIRGTIEASSDQSDWVGHNRKRWIEFEDISNLTLEGGGTSNGNGETWWDSSCKRKK 198

Query: 146 KEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTD 205
              C K APT L F  C NL +++++  +S + H++   C  V    L + AP  SPNTD
Sbjct: 199 SLPC-KSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTD 257

Query: 206 GIHIQASSNVYIHNAHISNG 225
           GIHI  +  +++ N+ I  G
Sbjct: 258 GIHITGTQRIHVMNSVIGTG 277

Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.

Persea americana (taxid: 3435)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 116/199 (58%), Gaps = 7/199 (3%)

Query: 29  VLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDIT 88
           V DFGA GDG  DD+ AF+ AW   CS+   +  +++PKG T+L+  I  TGPC +S +T
Sbjct: 70  VSDFGAKGDGKTDDTQAFVNAWKKACSSNG-AVNLLVPKGNTYLLKSIQLTGPC-NSILT 127

Query: 89  IMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDG--SGTIDGRGKAWWDISCKINKK 146
           + + G++ A    +++K  D SKW     V++L +DG  +G +DG G+ WW  SCK NK 
Sbjct: 128 VQIFGTLSASQKRSDYK--DISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKA 185

Query: 147 EGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDG 206
           + C K APT L F    +L + N+   N+ Q  +++  C  V+   + + AP  SPNTDG
Sbjct: 186 KPCTK-APTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDG 244

Query: 207 IHIQASSNVYIHNAHISNG 225
           IHI  + N+ +  + I  G
Sbjct: 245 IHITNTQNIRVSESIIGTG 263

Polygalacturonase involved in cell separation in the final stages of pod shatter, in anther dehiscence and in floral organ abscission.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 7/200 (3%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPT-MVIPKGKTFLVHPITFTGPCKSS 85
            NVL FGA GDG   D++AF +AWN  CS+  ++P   V+PK K +L+  ITF+GPC+SS
Sbjct: 76  INVLSFGAKGDGKTYDNIAFEQAWNEACSS--RTPVQFVVPKNKNYLLKQITFSGPCRSS 133

Query: 86  DITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINK 145
            I++ + GS+ A +  +++K  D+  W    SV +L + G GTI+G G+ WW  SCKINK
Sbjct: 134 -ISVKIFGSLEASSKISDYK--DRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKINK 190

Query: 146 KEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTD 205
              C + APT L F  C NL++NN+   N+ Q H+    C  V    L I A   SPNTD
Sbjct: 191 SLPC-RDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTD 249

Query: 206 GIHIQASSNVYIHNAHISNG 225
           G+H+  +  + I +  I  G
Sbjct: 250 GVHVSNTQYIQISDTIIGTG 269

Catalytic subunit of the polygalacturonase isozyme 1 and 2 (PG1 and PG2). Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation. The depolymerization and solubilization of cell wall polyuronides mediated by PG2 during ripening seems to be limited by the beta subunit GP1, probably by recruiting PG2 to form PG1.

Solanum lycopersicum (taxid: 4081)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
255553151	770	polygalacturonase, putative [Ricinus com	0.845	0.248	0.435	2e-46
317106729	380	JHL06P13.4 [Jatropha curcas]	0.853	0.507	0.446	2e-45
242037695	452	hypothetical protein SORBIDRAFT_01g00422	0.867	0.433	0.437	2e-45
255548940	395	Polygalacturonase-2 precursor, putative	0.951	0.544	0.420	4e-44
357114981	407	PREDICTED: polygalacturonase ADPG1-like	0.867	0.481	0.432	1e-43
357487387	400	Polygalacturonase [Medicago truncatula]	0.951	0.537	0.411	1e-43
356544252	402	PREDICTED: probable polygalacturonase At	0.951	0.534	0.409	1e-43
388511385	400	unknown [Medicago truncatula]	0.862	0.487	0.455	2e-43
356553680	402	PREDICTED: probable polygalacturonase At	0.951	0.534	0.418	3e-43
122894108	445	polygalacturonase [Citrus sinensis]	0.858	0.435	0.441	1e-42

>gi|255553151|ref|XP_002517618.1| polygalacturonase, putative [Ricinus communis] gi|223543250|gb|EEF44782.1| polygalacturonase, putative [Ricinus communis]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/202 (43%), Positives = 130/202 (64%), Gaps = 11/202 (5%)

Query: 26  EFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSS 85
           ++NVL +GA G+G  DD+MAF+KAWN+TC   ++ P MV+P GKTF V+P+T  GPC SS
Sbjct: 10  KYNVLSYGAVGNGIVDDTMAFMKAWNDTCK-DSRRPVMVVPMGKTFFVYPVTLFGPCNSS 68

Query: 86  DITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGS--GTIDGRGKAWWDISCKI 143
           ++ +M+ G+IIAP+ PN W       W   + V+ L + G+  G +DGRG  WW+ISC+ 
Sbjct: 69  NLIVMILGTIIAPDHPNVWNGRFHGTWLAFRYVNDLTVSGNGVGVLDGRGHRWWEISCRY 128

Query: 144 NKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPN 203
           NK +        ++ F+ C N+ +  ++ + S   H+ V GC  V F  L++Q+PG SPN
Sbjct: 129 NKSK--------IISFEMCKNVNLRRISTVRSGGGHIAVFGCENVRFSILNLQSPGKSPN 180

Query: 204 TDGIHIQASSNVYIHNAHISNG 225
           TDGIHI  S+ V+IH + I +G
Sbjct: 181 TDGIHISHSNFVHIHKSVIGSG 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106729|dbj|BAJ53225.1| JHL06P13.4 [Jatropha curcas]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 11/204 (5%)

Query: 5   LCAILYFLYLISTASIRINA--DEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPT 62
           L  ILY L ++S  S  I++  + +NVL +GA GDGN DD+ AF++AWN  C     +P 
Sbjct: 4   LFTILYVLTILSIMSSVISSPINHYNVLSYGAVGDGNEDDTQAFVEAWNAACHCDEDTPR 63

Query: 63  MVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQ 122
           +V+P+ KTFLV+PI F GPCKS +I ++LSG+IIAP+G N W E++  +W   + V  L 
Sbjct: 64  LVVPEDKTFLVNPINFLGPCKSGNIEVVLSGTIIAPDGSNPWMENNVGRWLAFRDVHGLN 123

Query: 123 IDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTV 182
           I G G +DGRG+ WWD  CK ++ +        +L F  C ++ M  +N   S   H+ +
Sbjct: 124 ITGDGMLDGRGERWWDF-CKHHRVK--------ILGFSNCTDVHMRGINTARSGGGHIFI 174

Query: 183 MGCIGVEFGFLSIQAPGTSPNTDG 206
            GC  V+  FL+IQAP TSPNTDG
Sbjct: 175 FGCENVDLAFLNIQAPATSPNTDG 198

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242037695|ref|XP_002466242.1| hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] gi|241920096|gb|EER93240.1| hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 131/199 (65%), Gaps = 3/199 (1%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSD 86
           F++  +GA GDG+ DD+ A  +AWN  C A+ +   +++P GK +L+  +T +GPCKSS 
Sbjct: 75  FSLDRYGACGDGSHDDTQALARAWNAAC-ASPQPAVLLVPGGKRYLLKLVTLSGPCKSS- 132

Query: 87  ITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKK 146
           +T+ + G+++A    ++W ++D+  W   + VD L ++G+GT+DG G+ WW  SCKINK 
Sbjct: 133 VTVTVKGTLVASPNRSDWSDEDRRHWIVFRQVDRLTVNGAGTVDGNGETWWKNSCKINKA 192

Query: 147 EGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDG 206
             C K APT L F  C +LR+ ++N +NS Q H+++  C GV+   LSI APGTSPNTDG
Sbjct: 193 LPC-KEAPTALSFHFCTSLRVQDLNVVNSQQIHMSIEDCTGVQLTGLSITAPGTSPNTDG 251

Query: 207 IHIQASSNVYIHNAHISNG 225
           IHI  S++V + N  I  G
Sbjct: 252 IHITRSNDVQVTNCKIKTG 270

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548940|ref|XP_002515526.1| Polygalacturonase-2 precursor, putative [Ricinus communis] gi|223545470|gb|EEF46975.1| Polygalacturonase-2 precursor, putative [Ricinus communis]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/226 (42%), Positives = 131/226 (57%), Gaps = 11/226 (4%)

Query: 1   MDADLCAILYFLYLISTASIR-INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAK 59
           M   L  +L F + +ST  +        NV+DFGA GDG  +DSMAF++AWN  C AT  
Sbjct: 1   MQKVLIGLLLFCFAVSTIVVEGARPSILNVVDFGAIGDGQTNDSMAFLQAWNALCEATT- 59

Query: 60  SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVD 119
           +P + +P GKTFL+ P+ F+GPC SS + I + GSI+AP   + WK      W     V 
Sbjct: 60  APLLRVPAGKTFLLQPVIFSGPCSSSRVRIQVLGSIVAPRSRDAWKNGTSESWLSFSQVL 119

Query: 120 SLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTH 179
           +L I G+G IDG+G AWW      + +   +K     L F +C+NL +  +  INSP+ H
Sbjct: 120 NLTISGTGQIDGQGSAWWT-----HPRSNHLK----ALHFSQCDNLILRGLTHINSPRNH 170

Query: 180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           +++  CIGV    L+I AP  SPNTDGI I  SS V I +++IS G
Sbjct: 171 ISINSCIGVIISHLNIIAPKESPNTDGIDISRSSYVKIRDSNISTG 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114981|ref|XP_003559272.1| PREDICTED: polygalacturonase ADPG1-like [Brachypodium distachyon]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSD 86
           F+V ++GA GDG  DD+ A  KAWN  CS++ +   +++PKGK++L+  +T +GPCKS +
Sbjct: 33  FSVDNYGARGDGKHDDTQALAKAWNAACSSS-RPAVLLVPKGKSYLLKSLTLSGPCKS-N 90

Query: 87  ITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKK 146
           +  M+ G+++AP   ++W ED++  W  +  V  L + G GTIDG G  WW  SCKI+K 
Sbjct: 91  VAFMVKGTLVAPQSRSDWSEDNRRHWIVLHGVSGLTVTGGGTIDGNGDIWWKNSCKIDKA 150

Query: 147 EGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDG 206
             C + APT L F  C+NL + N+  ++S Q +++V  C  V    LSI APGTSPNTDG
Sbjct: 151 LPCTE-APTALTFHMCDNLTVENIRIVDSQQINLSVEDCSDVRLARLSITAPGTSPNTDG 209

Query: 207 IHIQASSNVYIHNAHISNG 225
           IHI  S +V + +  I  G
Sbjct: 210 IHITRSKDVQVRDCLIKTG 228

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487387|ref|XP_003613981.1| Polygalacturonase [Medicago truncatula] gi|355515316|gb|AES96939.1| Polygalacturonase [Medicago truncatula]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 131/226 (57%), Gaps = 11/226 (4%)

Query: 5   LCAILYFLYLISTASIRINADE---FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSP 61
           L  +L F+        RI  D+   FNVL +GA GDGN DDS AF+KAWN+ C  T  +P
Sbjct: 4   LFTLLMFVITSQCLCGRITPDDGSNFNVLTYGANGDGNTDDSNAFVKAWNDVCGTTQGTP 63

Query: 62  TMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPN--EWKEDDKSKWFDIQSVD 119
           T++IP+GKTF++ P++F GPCKS+ I + + G+I AP      +WK++ +  W     ++
Sbjct: 64  TLIIPEGKTFMLQPLSFQGPCKSTTIQVEVKGTITAPKDIEAWKWKDNKRRSWVQFSKIN 123

Query: 120 SLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTH 179
            L + G GTIDG+G  WW       K        PT  +F  C +L ++N+N INSP+ H
Sbjct: 124 GLAVYGEGTIDGQGAPWWK------KYHDGDSNRPTAFQFIGCESLTISNLNHINSPRNH 177

Query: 180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           +++  C       L I AP  SPNTDGI I +SSN+ I+N  I  G
Sbjct: 178 ISIDSCKNASISNLQIIAPENSPNTDGIDIASSSNIIINNLSIKTG 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544252|ref|XP_003540568.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 129/227 (56%), Gaps = 12/227 (5%)

Query: 5   LCAILYFLYLISTASIR------INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATA 58
           L AI + LYL+S  S        IN + FNV+D+GA GDG  DDS AF+KAW+  C+   
Sbjct: 4   LIAIFFLLYLVSHCSCSRLREAAINLNTFNVMDYGAIGDGLTDDSQAFLKAWSMVCAMKN 63

Query: 59  KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSV 118
            + T+ +P GKTF++ P+ F+GPC  S +   L G ++AP     WK  D SKW D  +V
Sbjct: 64  GAATLKVPPGKTFMLKPLQFSGPCSFSSVHFQLEGDVVAPKSTEAWKGQDSSKWIDFSNV 123

Query: 119 DSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQT 178
           D L IDG G IDG G  WW+ SCK+   + C +  PT L    CNNL++     +NS + 
Sbjct: 124 DGLIIDGGGQIDGSGSVWWN-SCKV---KSCSR--PTALSIHNCNNLQLTGTRHLNSARN 177

Query: 179 HVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           H+++          ++I AP  SPNTDGI +  SS + I  + I+ G
Sbjct: 178 HISINNSNHTHIFNVTITAPQDSPNTDGIDVSQSSYILIQRSTIATG 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511385|gb|AFK43754.1| unknown [Medicago truncatula]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 120/202 (59%), Gaps = 7/202 (3%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSD 86
           FNVLD+GA G+G  D++ AF+ AW +TC A  +S T++IPKGKTF++ P+ F GPC SS+
Sbjct: 30  FNVLDYGAVGNGKNDETRAFVDAWKDTCIAMHESSTLLIPKGKTFMLQPVWFQGPCNSSN 89

Query: 87  ITIMLSGSIIAPNGPNEWK---EDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKI 143
           I + L G+IIAP     WK   ++ K  W     +  L + G G IDG+G  WWD  C  
Sbjct: 90  IYVKLEGTIIAPKNIEAWKWPNDNYKGSWIRFIEISGLIVYGGGIIDGKGAQWWD--CHS 147

Query: 144 NKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPN 203
           N K  C K  PT L F  C NL +  +  INSP+ H+++  C G     L I AP  SPN
Sbjct: 148 NIK--CEKENPTALHFHACENLILRELTHINSPRNHISLNACHGSHISKLHIIAPNESPN 205

Query: 204 TDGIHIQASSNVYIHNAHISNG 225
           TDGI I  SSN+ I N+ I  G
Sbjct: 206 TDGIDIAESSNIIIENSKIETG 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553680|ref|XP_003545181.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 130/227 (57%), Gaps = 12/227 (5%)

Query: 5   LCAILYFLYLISTAS---IR---INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATA 58
           L AI + LYL+S  S   IR   IN   FNV+D+GA GDG  DDS AF+KAW+  C+   
Sbjct: 4   LIAIFFVLYLVSHCSCSRIREAAINLYTFNVMDYGAIGDGLTDDSQAFLKAWSMVCAMKN 63

Query: 59  KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSV 118
            + T+ +P GKTF++ P+ F+GPC  S +   L G ++AP     WK  D SKW D  +V
Sbjct: 64  GAATLKVPPGKTFMLKPLQFSGPCSFSSVHFQLEGDVVAPKSTEAWKGQDSSKWIDFSNV 123

Query: 119 DSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQT 178
           D L IDG G IDG G  WW+ SCK+   + C +  PT L    CNNL++     +NS + 
Sbjct: 124 DGLIIDGGGQIDGSGSVWWN-SCKV---KSCSR--PTALSIQNCNNLQLTGTRHLNSARN 177

Query: 179 HVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           H+++          ++I AP  SPNTDGI +  SS + I  + I+ G
Sbjct: 178 HISINNSNHTHIFNVTITAPQDSPNTDGIDVSQSSYILIQRSTIATG 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122894108|gb|ABM67700.1| polygalacturonase [Citrus sinensis]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 29  VLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDIT 88
           V DFGA GDG  DD+ AF  AW   CS  A++  +V   G TFL+HPI  +GPCKS  +T
Sbjct: 57  VGDFGAKGDGFNDDTEAFANAWKKACSFPART-KIVFSAGYTFLIHPIDISGPCKSR-LT 114

Query: 89  IMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEG 148
           + +SG+I+AP  P+ WK  ++ +W     V+ L + G GTI+G G+ WW  SCKIN    
Sbjct: 115 LKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNP 174

Query: 149 CVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIH 208
           C + APT + F +C NL++ N+  +NS Q H+    C+ V    L + AP  SPNTDGIH
Sbjct: 175 C-RHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIH 233

Query: 209 IQASSNVYIHNAHISNG 225
           I AS  V + N+ +  G
Sbjct: 234 ISASRGVEVKNSIVGTG 250

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2016314	444	AT1G80170 [Arabidopsis thalian	0.787	0.400	0.386	4.4e-36
TAIR|locus:2128023	394	AT4G35670 [Arabidopsis thalian	0.849	0.487	0.361	2e-33
TAIR|locus:2155292	381	AT5G44840 [Arabidopsis thalian	0.575	0.341	0.366	2.4e-33
TAIR|locus:2146370	458	AT5G27530 [Arabidopsis thalian	0.517	0.255	0.418	7.7e-33
TAIR|locus:2103478	431	ADPG1 [Arabidopsis thaliana (t	0.924	0.484	0.356	1.6e-31
TAIR|locus:2077407	439	QRT2 "QUARTET 2" [Arabidopsis	0.884	0.455	0.351	8.8e-31
TAIR|locus:2027534	434	AT1G56710 [Arabidopsis thalian	0.876	0.456	0.346	1.8e-30
TAIR|locus:2026795	468	AT1G70500 [Arabidopsis thalian	0.858	0.414	0.343	1.8e-30
TAIR|locus:2196055	491	AT1G02460 [Arabidopsis thalian	0.876	0.403	0.347	3.4e-30
TAIR|locus:2093212	456	AT3G15720 [Arabidopsis thalian	0.898	0.445	0.341	6.2e-30

TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 70/181 (38%), Positives = 101/181 (55%)

Query:    45 AFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEW 104
             AF  AW   CS+  K+  +++P+  T L+ PI  +GPCK+  +T+ +SG+IIAPN P+ W
Sbjct:    71 AFADAWKTACSSKVKT-RILVPENYTCLLRPIDLSGPCKAR-LTLQISGTIIAPNDPDVW 128

Query:   105 KEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCXX 164
             +  ++ KW     +  L ++G GT++G G+ WW+ SCK N    C + APT L F +C  
Sbjct:   129 EGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSNPC-RGAPTALTFHKCKN 187

Query:   165 XXXXXXXXXXSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISN 224
                       S Q H+ +  C  V    L + AP TSPNTDGIHI  S  + I N  +S 
Sbjct:   188 MRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVST 247

Query:   225 G 225
             G
Sbjct:   248 G 248

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128023 AT4G35670 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 72/199 (36%), Positives = 105/199 (52%)

Query:    27 FNVLDFXXXXXXXXXXSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSD 86
             +NVL+F          S AF++AW   C       T++IP GKTFL+ P  F GPCKSS 
Sbjct:    24 YNVLNFDAKGDGQTDDSEAFLQAWTAACGGDGDIKTLLIPSGKTFLLQPTVFQGPCKSSS 83

Query:    87 ITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKK 146
             I + L G+I+AP+    W +     W    +V  L I GSGTID RG ++W+++ K +++
Sbjct:    84 IKVQLDGTIVAPSDKFAWSDPISRMWIKFSTVSGLIIVGSGTIDSRGSSFWELNLKASQR 143

Query:   147 EGCVKLAPTVLKFDRCXXXXXXXXXXXXSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDG 206
                    PT L   +C            SP+ H+++  C  V    +++ AP TSPNTDG
Sbjct:   144 -------PTALHISKCDNLRINGITSIDSPKNHISIKTCNTVAISNINLFAPETSPNTDG 196

Query:   207 IHIQASSNVYIHNAHISNG 225
             I I  S+N+ I ++ I  G
Sbjct:   197 IDISDSTNINIFDSTIQTG 215

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2155292 AT5G44840 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 48/131 (36%), Positives = 73/131 (55%)

Query:     8 ILYFLYLISTA-SIRINADEFNVLDFXXXXXXXXXXSMAFIKAWNNTCSATAKSPTMVIP 66
             IL  ++L++   SI +N   ++VL+F          S AF+KAW+  C +   S T +IP
Sbjct:     4 ILRGVFLLTLLHSILVNGQIYDVLEFGADGNGITDDSKAFVKAWSAMCGSGGNSKTFIIP 63

Query:    67 KGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGS 126
               KTFL+ P+TF GPCKS  + +   G I+AP     W +    +W   + +  L ++GS
Sbjct:    64 SNKTFLLQPLTFQGPCKSPSVQVKFDGKIVAPINKAAWSDYKLFRWVSFKEIIGLTVNGS 123

Query:   127 GTIDGRGKAWW 137
             GTI GRG ++W
Sbjct:   124 GTIHGRGSSFW 134

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2146370 AT5G27530 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 7.7e-33, Sum P(2) = 7.7e-33
 Identities = 49/117 (41%), Positives = 64/117 (54%)

Query:    22 INADEFNVLDFXXXXXXXXXXSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGP 81
             +N   +NVL F          S AF++AWN TC       T+ IP GKT+L+ PI F GP
Sbjct:    48 VNGQIYNVLKFGAEGDGQTDDSNAFLQAWNATCGGEENINTLFIPSGKTYLLQPIEFKGP 107

Query:    82 CKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWD 138
             CKS+ I + L G I+AP+    W       W     V  L IDGSGTI+GRG ++W+
Sbjct:   108 CKSTSIKLQLDGIIVAPSNITSWSNPKSQTWISFSGVPGLMIDGSGTINGRGSSFWE 164

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 77/216 (35%), Positives = 111/216 (51%)

Query:    12 LYLISTASIRINADEFNVLDFXXXXXXXXXXSMAFIKAWNNTCSATAKSPTMVIPKGKTF 71
             L LIS+    + A   +V +F          + AF KAW   CS    + T ++PKGKT+
Sbjct:    53 LSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVT-TFLVPKGKTY 111

Query:    72 LVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDG--SGTI 129
             L+    F GPCKS      + G++ A    +++K  DK+ W  ++ V++L IDG  +G I
Sbjct:   112 LLKSTRFRGPCKSLR-NFQILGTLSASTKRSDYK--DKNHWLILEDVNNLSIDGGSTGII 168

Query:   130 DGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCXXXXXXXXXXXXSPQTHVTVMGCIGVE 189
             +G GK WW  SCKI+K + C K APT L                 + Q  +++  C  VE
Sbjct:   169 NGNGKTWWQNSCKIDKSKPCTK-APTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVE 227

Query:   190 FGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
                + I APG SPNTDGIHI  + N+ + N+ I  G
Sbjct:   228 VSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTG 263

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0009830 "cell wall modification involved in abscission" evidence=RCA;TAS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 72/205 (35%), Positives = 108/205 (52%)

Query:    21 RINADEFNVLDFXXXXXXXXXXSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTG 80
             R +   FNV  F          S AF+KAW   CS+T     +V PK + +++  +TF+G
Sbjct:    65 RSSPRSFNVNTFGAKANGNDD-SKAFMKAWEAACSSTG-IVYIVAPKNRDYMLKAVTFSG 122

Query:    81 PCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDIS 140
             PCKSS I   + G I A   P+++KE  +  W   ++V++L+++G G IDG G  WW  S
Sbjct:   123 PCKSSLIIFKIYGRIEAWENPSDYKE--RRHWIVFENVNNLRVEGGGRIDGNGHIWWPKS 180

Query:   141 CKINKKEGCVKLAPTVLKFDRCXXXXXXXXXXXXSPQTHVTVMGCIGVEFGFLSIQAPGT 200
             CKIN +  C+  APT + F  C            + Q H+T   C  V+   L + +P  
Sbjct:   181 CKINPQLPCLG-APTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPAD 239

Query:   201 SPNTDGIHIQASSNVYIHNAHISNG 225
             SPNTDGIH+  + N+ I ++ +  G
Sbjct:   240 SPNTDGIHVSGTQNILIQDSIVRTG 264

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0009830 "cell wall modification involved in abscission" evidence=TAS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0045490 "pectin catabolic process" evidence=IMP

TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 71/205 (34%), Positives = 107/205 (52%)

Query:    27 FNVLDFXXXXXXXXXXSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSS 85
             F+V  F          + AF  AW+  C +T  KS  +++P    FLV P TF GPC+++
Sbjct:    48 FDVTSFGAIGDCSTDDTSAFKMAWDAACMSTGPKSALLLVPYTFCFLVKPTTFNGPCRTN 107

Query:    86 DITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINK 145
              + + + G I++P+GP  W  + + +W     V+ L I GSG I+GRG+ WW++ CK +K
Sbjct:   108 -LVLQIDGFIVSPDGPRSWPSNYQRQWMMFYRVNGLSIQGSGVINGRGQKWWNLPCKPHK 166

Query:   146 K-EGCVKL----APTVLKFDRCXXXXXXXXXXXXSPQTHVTVMGCIGVEFGFLSIQAPGT 200
                G  +     +P  ++  +             S Q HV    C  V    + I+AP +
Sbjct:   167 GLNGTTQTGPCDSPVAIRLFQSSKVRIQGINFMNSAQFHVRFDNCSDVVVDSVIIKAPAS 226

Query:   201 SPNTDGIHIQASSNVYIHNAHISNG 225
             SPNTDGIHI+ + NV I N+ ISNG
Sbjct:   227 SPNTDGIHIENTHNVQIRNSMISNG 251

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 68/198 (34%), Positives = 99/198 (50%)

Query:    28 NVLDFXXXXXXXXXXSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDI 87
             NV  F          + AFI+AW   CSA   +  +++P+G+++LV+   F GPC+   +
Sbjct:    68 NVDSFNASGDGVSDDTQAFIRAWTMACSAP--NSVLLVPQGRSYLVNATKFDGPCQEK-L 124

Query:    88 TIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKE 147
              I + G+IIAP+ P++W       W     +  +   G+G IDG G  WW  SCK NK  
Sbjct:   125 IIQIDGTIIAPDEPSQWDPKFPRNWLQFSKLQGVVFQGNGVIDGSGTKWWAASCKKNKSN 184

Query:   148 GCVKLAPTVLKFDRCXXXXXXXXXXXXSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGI 207
              CV  APT L                 S Q H+ +     V    + + +PG SPNTDGI
Sbjct:   185 PCVG-APTALTIYSSSNVYVRGLTIRNSQQMHLIIQRSTTVRISRVMVTSPGDSPNTDGI 243

Query:   208 HIQASSNVYIHNAHISNG 225
             HI AS++V + ++ IS G
Sbjct:   244 HITASTDVVVQDSKISTG 261

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.4e-30, P = 3.4e-30
 Identities = 72/207 (34%), Positives = 107/207 (51%)

Query:    27 FNVLDFXXXXXXXXXXSMAFIKAWNNTCSATAKSPT-MVIPKGKTFLVHPITFTGPCKSS 85
             +NV  +          + AF  AW+++C+    + + +++P G TF++    FTGPC+S 
Sbjct:    89 YNVRKYGAVGDGETDDTEAFKTAWDSSCNNENNTDSVLLVPYGYTFMIQSTIFTGPCRSY 148

Query:    86 DITIMLSGSIIAPNGPNEWKED-DKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKIN 144
                  + G+I+ P+GP  W  +  K +W     V+ + + G G IDGRG+ WWD+ CK +
Sbjct:   149 QF-FQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMALKGEGVIDGRGQKWWDLPCKPH 207

Query:   145 K---KEGCVKL---APTVLKFDRCXXXXXXXXXXXXSPQTHVTVMGCIGVEFGFLSIQAP 198
             +   K   V     +P  L+F               SPQ H    GC GV    L I AP
Sbjct:   208 RSVNKSAIVTGPCDSPIALRFFMSSNLRVEGLQIKNSPQFHFRFDGCQGVHVESLHITAP 267

Query:   199 GTSPNTDGIHIQASSNVYIHNAHISNG 225
               SPNTDGIHI+ S++V I+N+ ISNG
Sbjct:   268 PLSPNTDGIHIENSNSVTIYNSIISNG 294

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2093212 AT3G15720 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 74/217 (34%), Positives = 108/217 (49%)

Query:    10 YFL-YLISTASIRINADEFNVLDFXXXXXXXXXXSMAFIKAWNNTCSATAKSPTMVIPKG 68
             +FL + +    I  +++  +V  F          S AF+KAW   CS T      V+P G
Sbjct:     6 WFLNFSLFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQ-FVVPAG 64

Query:    69 KTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGT 128
              TF++ P+ F G CKS+ + + + G ++AP+  N WK  DK +W     ++ L I+G G 
Sbjct:    65 MTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGN-WK-GDKDQWILFTDIEGLVIEGDGE 122

Query:   129 IDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCXXXXXXXXXXXXSPQTHVTVMGCIGV 188
             I+G+G +WW+        +G     PT LKF  C            SP  H+ +  C  V
Sbjct:   123 INGQGSSWWE-------HKGS---RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYV 172

Query:   189 EFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
                 L I AP +SPNTDGI + ASSNV I +  I+ G
Sbjct:   173 TISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATG 209

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
PLN02793	443	PLN02793, PLN02793, Probable polygalacturonase	1e-62
PLN03010	409	PLN03010, PLN03010, polygalacturonase	1e-52
PLN02218	431	PLN02218, PLN02218, polygalacturonase ADPG	5e-46
PLN03003	456	PLN03003, PLN03003, Probable polygalacturonase At3	1e-44
PLN02188	404	PLN02188, PLN02188, polygalacturonase/glycoside hy	1e-38
pfam00295	325	pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam	9e-37
PLN02155	394	PLN02155, PLN02155, polygalacturonase	8e-31
COG5434	542	COG5434, PGU1, Endopygalactorunase [Cell envelope	8e-13
pfam12708	222	pfam12708, Pectate_lyase_3, Pectate lyase superfam	2e-04

>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase

 Score =  201 bits (512), Expect = 1e-62
 Identities = 91/199 (45%), Positives = 121/199 (60%), Gaps = 3/199 (1%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSD 86
            +V DFGA GDG  DD+ AF +AW   CS+  K+  +VIP G TFLV PI   GPCK+  
Sbjct: 53  LHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKT-RIVIPAGYTFLVRPIDLGGPCKAK- 110

Query: 87  ITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKK 146
           +T+ +SG+IIAP  P+ WK  +  KW     V+ L ++G GT++G G  WW  SCKIN  
Sbjct: 111 LTLQISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHT 170

Query: 147 EGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDG 206
             C + APT + F +C +LR+ N+N I+S Q H+    C  V    L + AP TSPNTDG
Sbjct: 171 NPC-RHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDG 229

Query: 207 IHIQASSNVYIHNAHISNG 225
           IHI AS  V I ++ +  G
Sbjct: 230 IHISASRGVVIKDSIVRTG 248

Length = 443

>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase

 Score =  174 bits (442), Expect = 1e-52
 Identities = 85/204 (41%), Positives = 116/204 (56%), Gaps = 17/204 (8%)

Query: 22  INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGP 81
           +N   +NVL FGA GDG  DDS AF++AWN TC       T++IP GKT+L+ PI F GP
Sbjct: 42  VNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGP 101

Query: 82  CKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISC 141
           CKS+ I + L G I+AP+    W       W    +V  L IDGSGTIDGRG ++W+   
Sbjct: 102 CKSTSIKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE--- 158

Query: 142 KINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTS 201
                          L   +C+NL +N +  I+SP+ H+++  C  V    ++I AP TS
Sbjct: 159 --------------ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETS 204

Query: 202 PNTDGIHIQASSNVYIHNAHISNG 225
           PNTDGI I  S+N+ I ++ I  G
Sbjct: 205 PNTDGIDISYSTNINIFDSTIQTG 228

Length = 409

>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG

 Score =  157 bits (398), Expect = 5e-46
 Identities = 79/200 (39%), Positives = 115/200 (57%), Gaps = 7/200 (3%)

Query: 28  NVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDI 87
           +V DFGA GDG  DD+ AF+ AW   CS+      +++PKG T+L+  I  TGPCKS   
Sbjct: 69  SVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAV-NLLVPKGNTYLLKSIQLTGPCKSI-R 126

Query: 88  TIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGT--IDGRGKAWWDISCKINK 145
           T+ + G++ A    +++K  D SKW     V++L +DG  T  +DG G+ WW  SCK NK
Sbjct: 127 TVQIFGTLSASQKRSDYK--DISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNK 184

Query: 146 KEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTD 205
            + C K APT L F    +L + N+   N+ Q  +++  C  V+   + + AP  SPNTD
Sbjct: 185 AKPCTK-APTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTD 243

Query: 206 GIHIQASSNVYIHNAHISNG 225
           GIHI  + N+ + N+ I  G
Sbjct: 244 GIHITNTQNIRVSNSIIGTG 263

Length = 431

>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720

 Score =  154 bits (390), Expect = 1e-44
 Identities = 82/202 (40%), Positives = 117/202 (57%), Gaps = 13/202 (6%)

Query: 24  ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCK 83
           ++  +V  FGA GDG  DDS AF+KAW   CS T      V+P G TF++ P+ F G CK
Sbjct: 21  SNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDG-QFVVPAGMTFMLQPLKFQGSCK 79

Query: 84  SSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKI 143
           S+ + + + G ++AP+  N WK  DK +W     ++ L I+G G I+G+G +WW+     
Sbjct: 80  STPVFVQMLGKLVAPSKGN-WK-GDKDQWILFTDIEGLVIEGDGEINGQGSSWWE----- 132

Query: 144 NKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPN 203
              +G     PT LKF  CNNLR++ +  ++SP  H+ +  C  V    L I AP +SPN
Sbjct: 133 --HKGS---RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPN 187

Query: 204 TDGIHIQASSNVYIHNAHISNG 225
           TDGI + ASSNV I +  I+ G
Sbjct: 188 TDGIDVGASSNVVIQDCIIATG 209

Length = 456

>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein

 Score =  137 bits (346), Expect = 1e-38
 Identities = 75/201 (37%), Positives = 108/201 (53%), Gaps = 13/201 (6%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKS-S 85
           F+V  FGA  +G+ DDS AF+ AW   C++T    T++IP G T+ + P+ F GPC + S
Sbjct: 37  FDVRSFGARANGHTDDSKAFMAAWKAACASTGAV-TLLIPPG-TYYIGPVQFHGPCTNVS 94

Query: 86  DITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDIS-CKIN 144
            +T  L  +       +  +    + W +   V+ L + G GT DG+G A W  + C I 
Sbjct: 95  SLTFTLKAAT------DLSRYGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIR 148

Query: 145 KKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNT 204
           K   C KL PT +KF   NN  +  +  +NS   H+ ++ C   +   L I AP  SPNT
Sbjct: 149 KD--C-KLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNT 205

Query: 205 DGIHIQASSNVYIHNAHISNG 225
           DGIHI+ SS VYI ++ I  G
Sbjct: 206 DGIHIERSSGVYISDSRIGTG 226

Length = 404

>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28

 Score =  130 bits (330), Expect = 9e-37
 Identities = 67/172 (38%), Positives = 91/172 (52%), Gaps = 10/172 (5%)

Query: 54  CSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWF 113
           CS+   S T+ +PKG  FL+   + +GPCKS   T+ + G+  A    ++ K      W 
Sbjct: 1   CSSIVLS-TISVPKG-GFLLGLTSLSGPCKS-GATVTIQGTTTADYKESQGKL----IWI 53

Query: 114 DIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFI 173
               + +L   G GTIDG+G AWWD SCK  K  GC K  P  L+F + +N  +  +N  
Sbjct: 54  TGTKITNLGASGGGTIDGQGPAWWDGSCK--KSNGC-KKKPKFLRFHKLDNSTITGLNIK 110

Query: 174 NSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           NSP  H +V  C  +    ++I AP  SPNTDGI I +SS V I N  I  G
Sbjct: 111 NSPVFHFSVEDCKNLTASDITIDAPAGSPNTDGIDIGSSSGVTISNTTIGTG 162

Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. Length = 325

>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase

 Score =  116 bits (292), Expect = 8e-31
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 19/223 (8%)

Query: 5   LCAILYFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMV 64
           L  +L F+ + S+AS       FNV+ FGA  DG  D + AF+KAW   C  +A S T+V
Sbjct: 11  LFTLLTFIDVSSSASN-----VFNVVSFGAKPDGVTDSTAAFLKAWQGAC-GSASSATVV 64

Query: 65  IPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQID 124
           +P G TFL+  ITF GPCKS  IT  ++G+++AP     +   +   W     V+   + 
Sbjct: 65  VPTG-TFLLKVITFGGPCKSK-ITFQVAGTVVAPEDYRTF--GNSGYWILFNKVNRFSLV 120

Query: 125 GSGTIDGRGKAWWDISCKINKKEGCVKLAPTV--LKFDRCNNLRMNNMNFINSPQTHVTV 182
           G GT D R   +W  SC+    + C    P V  + F+   ++ ++ +  +NS  +H+T+
Sbjct: 121 G-GTFDARANGFW--SCR-KSGQNC---PPGVRSISFNSAKDVIISGVKSMNSQVSHMTL 173

Query: 183 MGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
            GC  V    + + APG SPNTDG H+Q S+ V    + +  G
Sbjct: 174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTG 216

Length = 394

>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane]

 Score = 66.4 bits (162), Expect = 8e-13
 Identities = 59/234 (25%), Positives = 86/234 (36%), Gaps = 41/234 (17%)

Query: 26  EFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPIT-------- 77
            F+V D GA GDG  D++ A   A +   SA     T+++P G T+L  P+         
Sbjct: 82  AFSVSDDGAVGDGATDNTAAIQAAIDACASAGGG--TVLLPAG-TYLSGPLFLKSNVTLH 138

Query: 78  ----------------------FTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDI 115
                                 F G             ++I+  G  + K D        
Sbjct: 139 LAEGATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAG--- 195

Query: 116 QSVDSLQIDGSGTIDG----RGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMN 171
            S +  +I G GTIDG    RG  W+     +  + G   + P  +    C N+ +  +N
Sbjct: 196 NSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLN 255

Query: 172 FINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
             NSP   V  + C  + F  L+I A     NTDG    + SNV I       G
Sbjct: 256 IKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG 308

Length = 542

>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 27 FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLV 73
           NV DFGA GDG  DD+ A  KA     SAT     +  P G T+LV
Sbjct: 2  RNVKDFGAKGDGVTDDTAAIQKAICA--SATTGGAVVYFPPG-TYLV 45

This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PLN02218	431	polygalacturonase ADPG	100.0
PLN02793	443	Probable polygalacturonase	100.0
PLN02155	394	polygalacturonase	100.0
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	100.0
PLN03010	409	polygalacturonase	100.0
PLN03003	456	Probable polygalacturonase At3g15720	100.0
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	100.0
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	100.0
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	99.92
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	99.82
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	99.43
PF03718	582	Glyco_hydro_49: Glycosyl hydrolase family 49; Inte	99.27
PLN03003	456	Probable polygalacturonase At3g15720	98.38
PLN02793	443	Probable polygalacturonase	98.37
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	98.35
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	98.28
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	98.21
PLN02218	431	polygalacturonase ADPG	98.18
PLN02497	331	probable pectinesterase	98.1
PLN02155	394	polygalacturonase	98.03
PLN02480	343	Probable pectinesterase	97.91
PLN03010	409	polygalacturonase	97.9
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	97.86
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	97.81
PLN02682	369	pectinesterase family protein	97.55
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	97.52
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.51
PLN02176	340	putative pectinesterase	97.4
PLN02773	317	pectinesterase	97.39
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	97.31
PLN02665	366	pectinesterase family protein	97.25
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	97.22
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.21
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	97.2
PLN02634	359	probable pectinesterase	97.19
PRK10531	422	acyl-CoA thioesterase; Provisional	97.18
smart00656	190	Amb_all Amb_all domain.	97.13
PLN02170	529	probable pectinesterase/pectinesterase inhibitor	97.13
PLN02671	359	pectinesterase	97.12
PF12218	67	End_N_terminal: N terminal extension of bacterioph	96.99
PLN02933	530	Probable pectinesterase/pectinesterase inhibitor	96.95
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	96.94
PLN03043	538	Probable pectinesterase/pectinesterase inhibitor;	96.86
PLN02708	553	Probable pectinesterase/pectinesterase inhibitor	96.85
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	96.83
PLN02304	379	probable pectinesterase	96.83
PF01095	298	Pectinesterase: Pectinesterase; InterPro: IPR00007	96.82
PLN02506	537	putative pectinesterase/pectinesterase inhibitor	96.82
PLN02416	541	probable pectinesterase/pectinesterase inhibitor	96.81
PLN02484	587	probable pectinesterase/pectinesterase inhibitor	96.81
PF01696	386	Adeno_E1B_55K: Adenovirus EB1 55K protein / large	96.81
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	96.8
PLN02201	520	probable pectinesterase/pectinesterase inhibitor	96.79
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	96.78
PLN02713	566	Probable pectinesterase/pectinesterase inhibitor	96.78
PLN02995	539	Probable pectinesterase/pectinesterase inhibitor	96.77
PLN02197	588	pectinesterase	96.62
PLN02916	502	pectinesterase family protein	96.58
PLN02745	596	Putative pectinesterase/pectinesterase inhibitor	96.52
smart00656	190	Amb_all Amb_all domain.	96.48
PLN02990	572	Probable pectinesterase/pectinesterase inhibitor	96.38
PLN02488	509	probable pectinesterase/pectinesterase inhibitor	96.38
PLN02432	293	putative pectinesterase	96.33
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	96.29
PRK10123	464	wcaM putative colanic acid biosynthesis protein; P	96.28
PLN02314	586	pectinesterase	96.28
PLN02313	587	Pectinesterase/pectinesterase inhibitor	96.17
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	96.01
PLN02217	670	probable pectinesterase/pectinesterase inhibitor	95.97
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	95.95
PLN02301	548	pectinesterase/pectinesterase inhibitor	95.92
TIGR03804	44	para_beta_helix parallel beta-helix repeat (two co	95.67
PLN02468	565	putative pectinesterase/pectinesterase inhibitor	95.35
PF03718	582	Glyco_hydro_49: Glycosyl hydrolase family 49; Inte	94.12
COG4677	405	PemB Pectin methylesterase [Carbohydrate transport	93.96
TIGR03804	44	para_beta_helix parallel beta-helix repeat (two co	92.94
PRK10123	464	wcaM putative colanic acid biosynthesis protein; P	89.45
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	89.32
PLN02432	293	putative pectinesterase	83.24
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	82.55
PF15240	179	Pro-rich: Proline-rich	82.45
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	81.14

>PLN02218 polygalacturonase ADPG

Probab=100.00  E-value=7e-52  Score=369.67  Aligned_cols=203  Identities=38%  Similarity=0.764  Sum_probs=185.0

Q ss_pred             hcccccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEee
Q 047411           19 SIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAP   98 (226)
Q Consensus        19 ~~~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~   98 (226)
                      .+.+..++++|+||||++||.+|||+|||+||+++|+..| +++|+||+|++|+++++.|+||||+ +++|+++|+|+++
T Consensus        60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~G-gg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s  137 (431)
T PLN02218         60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNG-AVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSAS  137 (431)
T ss_pred             cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCC-CcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeC
Confidence            4445689999999999999999999999999977898877 8899999996699999999999999 9999999999999


Q ss_pred             CCCCCcCCCCCcceEEEeCccceEEEec--eEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC
Q 047411           99 NGPNEWKEDDKSKWFDIQSVDSLQIDGS--GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP  176 (226)
Q Consensus        99 ~~~~~~~~~~~~~~i~~~~~~nv~I~G~--G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~  176 (226)
                      +++.+|+  ....||.+.+++||+|+|.  |+|||+|+.||....+.++..++ ..||+++.|.+|+|++|+|++++|||
T Consensus       138 ~d~~~y~--~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~-~~rP~~i~f~~~~nv~I~gitl~nSp  214 (431)
T PLN02218        138 QKRSDYK--DISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPC-TKAPTALTFYNSKSLIVKNLRVRNAQ  214 (431)
T ss_pred             CChhhcc--ccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCcc-CcCCEEEEEEccccEEEeCeEEEcCC
Confidence            9999886  3357999999999999996  99999999999854432233344 57999999999999999999999999


Q ss_pred             ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          177 QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       177 ~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +|++++..|+||+|++++|.+|.++|||||||+++|+||+|+||+|++||
T Consensus       215 ~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGD  264 (431)
T PLN02218        215 QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGD  264 (431)
T ss_pred             CEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCC
Confidence            99999999999999999999999999999999999999999999999998

>PLN02793 Probable polygalacturonase

Probab=100.00  E-value=1.2e-51  Score=369.52  Aligned_cols=200  Identities=45%  Similarity=0.886  Sum_probs=183.1

Q ss_pred             cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCC
Q 047411           24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNE  103 (226)
Q Consensus        24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~  103 (226)
                      .++++|+||||++||.+|||+|||+||+++|+..| |++|+||+|++|+++++.|.||||| +++|+++|+|+++.++.+
T Consensus        50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~g-gg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~  127 (443)
T PLN02793         50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKV-KTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDV  127 (443)
T ss_pred             ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCC-CCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHH
Confidence            46899999999999999999999999976898877 8999999995599999999999999 999999999999999999


Q ss_pred             cCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEe
Q 047411          104 WKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVM  183 (226)
Q Consensus       104 ~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~  183 (226)
                      |+..+..+||++.+++|++|+|.|+|||+|+.||....+.+...++ ..||+++.|.+|+|++|+|++++|||+|++++.
T Consensus       128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~-~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~  206 (443)
T PLN02793        128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPC-RHAPTAITFHKCKDLRVENLNVIDSQQMHIAFT  206 (443)
T ss_pred             ccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCc-cCCceEEEEEeeccEEEECeEEEcCCCeEEEEE
Confidence            9865567899999999999999999999999999753321112233 469999999999999999999999999999999


Q ss_pred             CeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          184 GCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       184 ~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      .|++|+|++++|.+|..+|||||||+++|+||+|+||+|++||
T Consensus       207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD  249 (443)
T PLN02793        207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD  249 (443)
T ss_pred             ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC
Confidence            9999999999999998899999999999999999999999998

>PLN02155 polygalacturonase

Probab=100.00  E-value=1.5e-50  Score=357.51  Aligned_cols=197  Identities=34%  Similarity=0.692  Sum_probs=178.3

Q ss_pred             cccccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeC
Q 047411           20 IRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPN   99 (226)
Q Consensus        20 ~~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~   99 (226)
                      ++..+++|||+||||++||++|||+|||+||+++|+..| |++|+||+| +|++++|.|.||||| +++|+++|+|++++
T Consensus        21 ~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~g-Gg~v~vP~G-~yl~g~i~l~gpcks-nv~l~l~G~l~~~~   97 (394)
T PLN02155         21 SSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAS-SATVVVPTG-TFLLKVITFGGPCKS-KITFQVAGTVVAPE   97 (394)
T ss_pred             cccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCC-CeEEEECCC-cEEEEEEEEcccCCC-CceEEEeeEEECcc
Confidence            345578999999999999999999999999976888877 899999999 999999999999999 99999999999888


Q ss_pred             CCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceE
Q 047411          100 GPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTH  179 (226)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~  179 (226)
                      ++..|..  ...|+.+.++++++|+| |+|||+|+.||....+   ..++ ..+|+++.|.+|++++|++++++|||+|+
T Consensus        98 d~~~~~~--~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~---~~~~-~~~p~~i~~~~~~nv~i~gitl~nSp~w~  170 (394)
T PLN02155         98 DYRTFGN--SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS---GQNC-PPGVRSISFNSAKDVIISGVKSMNSQVSH  170 (394)
T ss_pred             ccccccc--cceeEEEECcCCCEEEc-cEEecCceeEEEcccC---CCCC-CCcccceeEEEeeeEEEECeEEEcCCCeE
Confidence            8776752  24689999999999999 9999999999973221   1222 45788999999999999999999999999


Q ss_pred             EEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       180 i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +++..|++++|++++|.+|.++|||||||+++|+||+|+||+|++||
T Consensus       171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gD  217 (394)
T PLN02155        171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGD  217 (394)
T ss_pred             EEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCC
Confidence            99999999999999999999899999999999999999999999998

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=100.00  E-value=8.3e-50  Score=354.06  Aligned_cols=217  Identities=34%  Similarity=0.646  Sum_probs=184.7

Q ss_pred             CCchhhHHHHHHHHHhhhh-cc---------cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCe
Q 047411            1 MDADLCAILYFLYLISTAS-IR---------INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKT   70 (226)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~t   70 (226)
                      |..||+++|..++++..+- .+         +..+++||+||||++||.+|||+|||+||+++|++.| |++|+||+| +
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~G-gg~V~vP~G-~   78 (404)
T PLN02188          1 MEFRLLLLLVVVFIVNALVLSSAGGGSVVKGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTG-AVTLLIPPG-T   78 (404)
T ss_pred             CcceEeeeeeeeeeecceeEeccCCCcccccCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCC-CeEEEECCC-e
Confidence            6778877776555443321 11         1246899999999999999999999999977898877 889999999 9


Q ss_pred             EEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcc
Q 047411           71 FLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCV  150 (226)
Q Consensus        71 Y~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~  150 (226)
                      |+++++.|+||||+ ...|.+  +|++++++++|+.  ...|+.+..++||+|+|.|+|||+|+.||...... ...++ 
T Consensus        79 yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~y~~--~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~-~~~~~-  151 (404)
T PLN02188         79 YYIGPVQFHGPCTN-VSSLTF--TLKAATDLSRYGS--GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCP-IRKDC-  151 (404)
T ss_pred             EEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHHCCC--ccceEEEeceeeEEEEeeEEEeCCCcccccccccc-cCCCC-
Confidence            99999999999976 444544  8999999999973  24688888899999999999999999999732111 11233 


Q ss_pred             cCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          151 KLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       151 ~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      ..||+++.|.+|+|++|+|++++|||+|++++..|++++|++++|.+|.++|||||||+++|+||+|+||+|++||
T Consensus       152 ~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD  227 (404)
T PLN02188        152 KLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD  227 (404)
T ss_pred             CcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC
Confidence            5799999999999999999999999999999999999999999999999899999999999999999999999998

>PLN03010 polygalacturonase

Probab=100.00  E-value=1.2e-48  Score=346.29  Aligned_cols=187  Identities=45%  Similarity=0.898  Sum_probs=171.9

Q ss_pred             ccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCC
Q 047411           23 NADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPN  102 (226)
Q Consensus        23 ~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~  102 (226)
                      .+++|||+||||++||++|||+|||+||+++|+..|.+++|+||+|++|+++|+.|++|||+.+++|+++|+|++++++.
T Consensus        43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~  122 (409)
T PLN03010         43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV  122 (409)
T ss_pred             CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence            57899999999999999999999999997677642102699999996799999999999985489999999999999999


Q ss_pred             CcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEE
Q 047411          103 EWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTV  182 (226)
Q Consensus       103 ~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~  182 (226)
                      +|+......|+.+.+++|++|+|.|+|||+|+.||.                 ++.|.+|+|++|+|++++|||+|++++
T Consensus       123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-----------------~l~~~~~~nv~v~gitl~nsp~~~i~i  185 (409)
T PLN03010        123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-----------------ALHISKCDNLTINGITSIDSPKNHISI  185 (409)
T ss_pred             hccCCCCcceEEEecccccEEeeceEEeCCCccccc-----------------eEEEEeecCeEEeeeEEEcCCceEEEE
Confidence            997444457999999999999999999999999995                 589999999999999999999999999


Q ss_pred             eCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          183 MGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       183 ~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      ..|++++|++++|.+|..++||||||+.+|++|+|+||+|++||
T Consensus       186 ~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gD  229 (409)
T PLN03010        186 KTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGD  229 (409)
T ss_pred             eccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCC
Confidence            99999999999999998899999999999999999999999998

>PLN03003 Probable polygalacturonase At3g15720

Probab=100.00  E-value=6.1e-48  Score=344.01  Aligned_cols=194  Identities=42%  Similarity=0.860  Sum_probs=176.1

Q ss_pred             cccccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeC
Q 047411           20 IRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPN   99 (226)
Q Consensus        20 ~~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~   99 (226)
                      .-.+.+++||++|||++||.+|||+|||+||++||++.+ |++|+||+|++|+++++.|+||||++.++++++|+++++.
T Consensus        17 ~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~g-gg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~   95 (456)
T PLN03003         17 IFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTG-DGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPS   95 (456)
T ss_pred             eeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccC-CCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCc
Confidence            345678999999999999999999999999987798777 8999999996688999999999987448888899999865


Q ss_pred             CCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceE
Q 047411          100 GPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTH  179 (226)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~  179 (226)
                      . ..|.+. ...||++.++++++|+|.|+|||+|+.||..  +        ..||+++.|.+|+|++|+|++++|||+||
T Consensus        96 ~-~~w~~~-~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~--~--------~~rP~~l~f~~~~nv~I~gitl~NSp~w~  163 (456)
T PLN03003         96 K-GNWKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEH--K--------GSRPTALKFRSCNNLRLSGLTHLDSPMAH  163 (456)
T ss_pred             c-ccccCC-CcceEEEEcccceEEeccceEeCCchhhhhc--c--------cCCceEEEEEecCCcEEeCeEEecCCcEE
Confidence            4 457632 3569999999999999999999999999973  1        47999999999999999999999999999


Q ss_pred             EEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       180 i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +++..|++++|++++|.+|..+|||||||+++|+||+|+||+|++||
T Consensus       164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGD  210 (456)
T PLN03003        164 IHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGD  210 (456)
T ss_pred             EEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCC
Confidence            99999999999999999998899999999999999999999999998

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.6e-33  Score=253.51  Aligned_cols=196  Identities=29%  Similarity=0.540  Sum_probs=160.5

Q ss_pred             cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe-e-EEEeeC
Q 047411           22 INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS-G-SIIAPN   99 (226)
Q Consensus        22 ~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~-g-~l~~~~   99 (226)
                      +....++|.+|||++||.+++++|||+|| ++|++.+ |++|+||+| +|+.++|+|    || +++|+++ | +|+++.
T Consensus        78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI-~~ca~a~-Gg~V~lPaG-tylsg~l~L----KS-~~~L~l~egatl~~~~  149 (542)
T COG5434          78 ATDTAFSVSDDGAVGDGATDNTAAIQAAI-DACASAG-GGTVLLPAG-TYLSGPLFL----KS-NVTLHLAEGATLLASS  149 (542)
T ss_pred             cccceeeeccccccccCCccCHHHHHHHH-Hhhhhhc-CceEEECCc-eeEeeeEEE----ec-ccEEEecCCceeeCCC
Confidence            34678999999999999999999999999 5788777 999999999 999999999    79 9999996 5 999999


Q ss_pred             CCCCcCC------CCC-----------------------cceEEEeCccceE-EEeceEEeCCC----cccccccccccc
Q 047411          100 GPNEWKE------DDK-----------------------SKWFDIQSVDSLQ-IDGSGTIDGRG----KAWWDISCKINK  145 (226)
Q Consensus       100 ~~~~~~~------~~~-----------------------~~~i~~~~~~nv~-I~G~G~idG~G----~~~~~~~~~~~~  145 (226)
                      ++.+|+.      .+.                       ...+.....+|.. |.|.|+++|++    ..||...+....
T Consensus       150 ~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~  229 (542)
T COG5434         150 NPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVET  229 (542)
T ss_pred             ChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhh
Confidence            9988883      000                       1222223344544 88889999975    226654331001


Q ss_pred             cCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          146 KEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       146 ~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      .-.+...||..+.+..|+||+++|++|.|+|.|++++..|++++++|++|.++... |+|||++.+|+||.|++|+|++|
T Consensus       230 ~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtg  308 (542)
T COG5434         230 RIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG  308 (542)
T ss_pred             cccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecC
Confidence            11100259999999999999999999999999999999999999999999998655 99999999999999999999999


Q ss_pred             C
Q 047411          226 T  226 (226)
Q Consensus       226 D  226 (226)
                      |
T Consensus       309 D  309 (542)
T COG5434         309 D  309 (542)
T ss_pred             C
Confidence            8

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=100.00  E-value=7.2e-34  Score=247.60  Aligned_cols=164  Identities=35%  Similarity=0.650  Sum_probs=136.9

Q ss_pred             cccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCC
Q 047411           54 CSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRG  133 (226)
Q Consensus        54 ~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G  133 (226)
                      |++.+ +++|+||+| +|+++++.|++++++ +++++|+|++.++.....|+  + .++|++.+++|++|+|.|+|||+|
T Consensus         1 C~~~~-~~~v~vP~g-~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~--~-~~~i~~~~~~ni~i~G~G~IDG~G   74 (326)
T PF00295_consen    1 CSSIG-GGTVVVPAG-TYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGP--N-SALIYAENAENITITGKGTIDGNG   74 (326)
T ss_dssp             HSEEE-EESEEESTS-TEEEEETSEETECET-TCEEEEESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--G
T ss_pred             CcCCc-CCEEEECCC-CeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCC--c-cEEEEEEceEEEEecCCceEcCch
Confidence            44444 678999999 999999999655456 89999999999875444443  2 689999999999999999999999


Q ss_pred             cccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCee
Q 047411          134 KAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASS  213 (226)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~  213 (226)
                      +.||......  ..+. ..||+++.|.+|++++|+|++++|||+|++++..|++++|++++|.++...+|+||||+++|+
T Consensus        75 ~~w~~~~~~~--~~~~-~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~  151 (326)
T PF00295_consen   75 QAWWDGSGDA--NNNG-QRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSK  151 (326)
T ss_dssp             GGTCSSCTTH--CCSS-SSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEE
T ss_pred             hhhhcccccc--cccc-ccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeee
Confidence            9999854321  1222 689999999999999999999999999999999999999999999998878999999999999


Q ss_pred             cEEEEeeEEecCC
Q 047411          214 NVYIHNAHISNGT  226 (226)
Q Consensus       214 ~v~I~n~~i~~gD  226 (226)
                      ||+|+||+|++||
T Consensus       152 nv~I~n~~i~~gD  164 (326)
T PF00295_consen  152 NVTIENCFIDNGD  164 (326)
T ss_dssp             EEEEESEEEESSS
T ss_pred             EEEEEEeeccccc
Confidence            9999999999998

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=99.92  E-value=2.6e-24  Score=189.74  Aligned_cols=171  Identities=15%  Similarity=0.255  Sum_probs=137.4

Q ss_pred             cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe-eEEEeeCCCC
Q 047411           24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS-GSIIAPNGPN  102 (226)
Q Consensus        24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~-g~l~~~~~~~  102 (226)
                      .+.+++++|||++||.+|+|+|||+||+ +|++ + +++|.+|+| +|+.+++.|    ++ +++|+.+ +....     
T Consensus        35 ~r~~dv~~fGa~~dG~td~T~ALQaAId-aAa~-g-G~tV~Lp~G-~Y~~G~L~L----~s-pltL~G~~gAt~~-----  100 (455)
T TIGR03808        35 TLGRDATQYGVRPNSPDDQTRALQRAID-EAAR-A-QTPLALPPG-VYRTGPLRL----PS-GAQLIGVRGATRL-----  100 (455)
T ss_pred             ccCCCHHHcCcCCCCcchHHHHHHHHHH-Hhhc-C-CCEEEECCC-ceecccEEE----CC-CcEEEecCCcEEE-----
Confidence            5568999999999999999999999996 4554 3 678999999 999999999    56 9999887 33210     


Q ss_pred             CcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEE
Q 047411          103 EWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTV  182 (226)
Q Consensus       103 ~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~  182 (226)
                      .+.  ....++...++++|+|+|. +|+|.|..|              ..||.++.+..|++++|++++|++++.|++.+
T Consensus       101 vId--G~~~lIiai~A~nVTIsGL-tIdGsG~dl--------------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L  163 (455)
T TIGR03808       101 VFT--GGPSLLSSEGADGIGLSGL-TLDGGGIPL--------------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWL  163 (455)
T ss_pred             EEc--CCceEEEEecCCCeEEEee-EEEeCCCcc--------------cCCCCEEEEccCCceEEEeeEEEcCCcceEEE
Confidence            011  1145665667899999997 999999765              34778999999999999999999999999999


Q ss_pred             eCee----------------------eEEEEeEEEECCCC--------------------------------CCCCCeEE
Q 047411          183 MGCI----------------------GVEFGFLSIQAPGT--------------------------------SPNTDGIH  208 (226)
Q Consensus       183 ~~s~----------------------~v~i~~~~i~~~~~--------------------------------~~ntDGi~  208 (226)
                      ..|+                      ++.|++.+|....+                                ....+||+
T Consensus       164 ~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~  243 (455)
T TIGR03808       164 ETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAIN  243 (455)
T ss_pred             EcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEE
Confidence            9999                      77777777766544                                34577888


Q ss_pred             ecCeecEEEEeeEEecC
Q 047411          209 IQASSNVYIHNAHISNG  225 (226)
Q Consensus       209 ~~~s~~v~I~n~~i~~g  225 (226)
                      ++.+.+++|++++|+..
T Consensus       244 ~~~a~~v~V~gN~I~~~  260 (455)
T TIGR03808       244 AFRAGNVIVRGNRIRNC  260 (455)
T ss_pred             EEccCCeEEECCEEecc
Confidence            88888888888888754

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=99.82  E-value=5.4e-19  Score=145.14  Aligned_cols=130  Identities=25%  Similarity=0.376  Sum_probs=76.2

Q ss_pred             eEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe-eeeeeCCCcCccEEEEEee---E-EEeeCC
Q 047411           26 EFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH-PITFTGPCKSSDITIMLSG---S-IIAPNG  100 (226)
Q Consensus        26 ~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~-~l~l~~~~ks~~v~l~~~g---~-l~~~~~  100 (226)
                      .+||+||||+|||.+|||+|||+||++ ++..+ +++|+||+| +|+++ ++.+    ++ +++|+++|   + +.....
T Consensus         1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~-g~~v~~P~G-~Y~i~~~l~~----~s-~v~l~G~g~~~~~~~~~~~   72 (225)
T PF12708_consen    1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAG-GGVVYFPPG-TYRISGTLII----PS-NVTLRGAGGNSTILFLSGS   72 (225)
T ss_dssp             EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTT-SEEEEE-SE-EEEESS-EEE-----T-TEEEEESSTTTEEEEECTT
T ss_pred             CcceeecCcCCCCChhHHHHHHHhhhh-cccCC-CeEEEEcCc-EEEEeCCeEc----CC-CeEEEccCCCeeEEEecCc
Confidence            379999999999999999999999944 44445 899999999 99996 6888    47 99999974   3 332222


Q ss_pred             CCCcCCCCCcceEEEeC-ccc--eEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc
Q 047411          101 PNEWKEDDKSKWFDIQS-VDS--LQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ  177 (226)
Q Consensus       101 ~~~~~~~~~~~~i~~~~-~~n--v~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~  177 (226)
                      ...+..  ......+.. ..+  +.|++ -+|+|++...              ......+.+..++++.|+++++.|+..
T Consensus        73 ~~~~~~--~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~--------------~~~~~~i~~~~~~~~~i~nv~~~~~~~  135 (225)
T PF12708_consen   73 GDSFSV--VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDP--------------NNNNNGIRFNSSQNVSISNVRIENSGG  135 (225)
T ss_dssp             TSTSCC--EEEEEECCSCSCCEEEEEEE-EEEEETCGCE---------------SCEEEEEETTEEEEEEEEEEEES-SS
T ss_pred             cccccc--ccceeeeecCCCCceEEEEe-eEEEcccccC--------------CCCceEEEEEeCCeEEEEeEEEEccCc
Confidence            222210  001111111 112  22444 3555554321              112356777778888888888777643


Q ss_pred             eEE
Q 047411          178 THV  180 (226)
Q Consensus       178 ~~i  180 (226)
                      .++
T Consensus       136 ~~i  138 (225)
T PF12708_consen  136 DGI  138 (225)
T ss_dssp             -SE
T ss_pred             cEE
Confidence            333

...

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=99.43  E-value=3.9e-12  Score=110.44  Aligned_cols=138  Identities=12%  Similarity=0.205  Sum_probs=101.1

Q ss_pred             HHHHHHHhcccCCCCCEEEecCCCeEEE-eeeeeeCCCcCccEEEEEee---E-EEeeCCCCCcCCCCCcceEEEeCccc
Q 047411           46 FIKAWNNTCSATAKSPTMVIPKGKTFLV-HPITFTGPCKSSDITIMLSG---S-IIAPNGPNEWKEDDKSKWFDIQSVDS  120 (226)
Q Consensus        46 iq~Ai~~a~~~~g~g~~v~iP~G~tY~~-~~l~l~~~~ks~~v~l~~~g---~-l~~~~~~~~~~~~~~~~~i~~~~~~n  120 (226)
                      ||+|++ ++++   |.+|+||+| +|.+ +++.+.   |+ +++|+.+|   + |.+....      .....+.+. +++
T Consensus         1 iQ~Ai~-~A~~---GDtI~l~~G-~Y~~~~~l~I~---~~-~Iti~G~g~~~tvid~~~~~------~~~~~i~v~-a~~   64 (314)
T TIGR03805         1 LQEALI-AAQP---GDTIVLPEG-VFQFDRTLSLD---AD-GVTIRGAGMDETILDFSGQV------GGAEGLLVT-SDD   64 (314)
T ss_pred             CHhHHh-hCCC---CCEEEECCC-EEEcceeEEEe---CC-CeEEEecCCCccEEecccCC------CCCceEEEE-eCC
Confidence            699994 5565   789999999 9997 688886   45 89998764   3 3222111      013345554 589


Q ss_pred             eEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEe-------CCCceEEEEeCeeeEEEEeE
Q 047411          121 LQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFI-------NSPQTHVTVMGCIGVEFGFL  193 (226)
Q Consensus       121 v~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~-------ns~~~~i~~~~s~~v~i~~~  193 (226)
                      |+|+|. +|.+.+                    ..++.+..|++++|+++++.       ....+++.+..|++++|+++
T Consensus        65 VtI~~l-tI~~~~--------------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n  123 (314)
T TIGR03805        65 VTLSDL-AVENTK--------------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDS  123 (314)
T ss_pred             eEEEee-EEEcCC--------------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECC
Confidence            999884 332211                    12677889999999999997       13468899999999999999


Q ss_pred             EEECCCCCCCCCeEEecCeecEEEEeeEEec
Q 047411          194 SIQAPGTSPNTDGIHIQASSNVYIHNAHISN  224 (226)
Q Consensus       194 ~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~  224 (226)
                      ++...    ..+||-+..|+++.|++|+++.
T Consensus       124 ~i~g~----~d~GIyv~~s~~~~v~nN~~~~  150 (314)
T TIGR03805       124 YVRGA----SDAGIYVGQSQNIVVRNNVAEE  150 (314)
T ss_pred             EEECC----CcccEEECCCCCeEEECCEEcc
Confidence            99873    3359999999999999998864

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3

Probab=99.27  E-value=1.3e-10  Score=104.71  Aligned_cols=147  Identities=14%  Similarity=0.210  Sum_probs=84.8

Q ss_pred             CCEEEecCCCeEEEee---eeeeCCCcCccEEEEEe-eEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcc
Q 047411           60 SPTMVIPKGKTFLVHP---ITFTGPCKSSDITIMLS-GSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKA  135 (226)
Q Consensus        60 g~~v~iP~G~tY~~~~---l~l~~~~ks~~v~l~~~-g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~  135 (226)
                      -.+|||+|| +|.++.   +.|+    +..-+++++ |.+..            +++......+|+.|.|.|++.|.-..
T Consensus       232 ~~~lYF~PG-Vy~ig~~~~l~L~----sn~~~VYlApGAyVk------------GAf~~~~~~~nv~i~G~GVLSGe~Yv  294 (582)
T PF03718_consen  232 KDTLYFKPG-VYWIGSDYHLRLP----SNTKWVYLAPGAYVK------------GAFEYTDTQQNVKITGRGVLSGEQYV  294 (582)
T ss_dssp             SSEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEEE------------S-EEE---SSEEEEESSSEEE-TTS-
T ss_pred             cceEEeCCc-eEEeCCCccEEEC----CCccEEEEcCCcEEE------------EEEEEccCCceEEEEeeEEEcCccee
Confidence            459999999 999974   7784    413588887 65442            44444457899999999999998777


Q ss_pred             cccccccccc----cCCcccCCceEEEEe---ecCcEEEeeeEEeCCCceEEEEeCee----eEEEEeEEEECCCCCCCC
Q 047411          136 WWDISCKINK----KEGCVKLAPTVLKFD---RCNNLRMNNMNFINSPQTHVTVMGCI----GVEFGFLSIQAPGTSPNT  204 (226)
Q Consensus       136 ~~~~~~~~~~----~~~~~~~rp~~i~~~---~~~nv~i~~i~i~ns~~~~i~~~~s~----~v~i~~~~i~~~~~~~nt  204 (226)
                      |.....+.-.    ..++....-+++.+.   .++++.++|++|.++|+|.+.+.+.+    ++.|+|.++..... .++
T Consensus       295 y~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qt  373 (582)
T PF03718_consen  295 YEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQT  373 (582)
T ss_dssp             TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT-
T ss_pred             EeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-ecc
Confidence            6432111000    001101223566644   45599999999999999999998655    58999999998653 799


Q ss_pred             CeEEecCeecEEEEeeEEecCC
Q 047411          205 DGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       205 DGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      |||.+..  +-+|+||++++-|
T Consensus       374 DGi~ly~--nS~i~dcF~h~nD  393 (582)
T PF03718_consen  374 DGIELYP--NSTIRDCFIHVND  393 (582)
T ss_dssp             ---B--T--T-EEEEEEEEESS
T ss_pred             CCccccC--CCeeeeeEEEecC
Confidence            9999985  5677899999766

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.

>PLN03003 Probable polygalacturonase At3g15720

Probab=98.38  E-value=6.1e-06  Score=74.80  Aligned_cols=113  Identities=18%  Similarity=0.270  Sum_probs=78.3

Q ss_pred             cEEEEEeeEEEeeCCCCCcCCCCCcc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCc
Q 047411           86 DITIMLSGSIIAPNGPNEWKEDDKSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNN  164 (226)
Q Consensus        86 ~v~l~~~g~l~~~~~~~~~~~~~~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~n  164 (226)
                      ++++...|+|...- ..-|.....+| ++.+.+++|++|+|- ++-  ....                  .-+.+.+|++
T Consensus       114 ~i~I~G~GtIDGqG-~~wW~~~~~rP~~l~f~~~~nv~I~gi-tl~--NSp~------------------w~i~i~~c~n  171 (456)
T PLN03003        114 GLVIEGDGEINGQG-SSWWEHKGSRPTALKFRSCNNLRLSGL-THL--DSPM------------------AHIHISECNY  171 (456)
T ss_pred             ceEEeccceEeCCc-hhhhhcccCCceEEEEEecCCcEEeCe-EEe--cCCc------------------EEEEEecccc
Confidence            88888888886422 12343222233 788999999999983 221  1111                  2478889999


Q ss_pred             EEEeeeEEeCCC---c-eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEecC
Q 047411          165 LRMNNMNFINSP---Q-THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISNG  225 (226)
Q Consensus       165 v~i~~i~i~ns~---~-~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~g  225 (226)
                      ++|+++++.++.   . -++++..|+||+|+|+.|.+     ..|.|-+- +|+||+|+||....|
T Consensus       172 V~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~G  232 (456)
T PLN03003        172 VTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPG  232 (456)
T ss_pred             EEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECC
Confidence            999999999742   2 35899999999999999997     35777664 366777777776543

>PLN02793 Probable polygalacturonase

Probab=98.37  E-value=1e-05  Score=73.41  Aligned_cols=113  Identities=17%  Similarity=0.320  Sum_probs=79.2

Q ss_pred             cEEEEEeeEEEeeCCCCCcCC------CC---Ccc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCce
Q 047411           86 DITIMLSGSIIAPNGPNEWKE------DD---KSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPT  155 (226)
Q Consensus        86 ~v~l~~~g~l~~~~~~~~~~~------~~---~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~  155 (226)
                      ++++...|+|...- ..-|..      .+   .+| ++.+.+++|++|+|--..+..   .                  .
T Consensus       144 ni~ItG~G~IDG~G-~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~------------------~  201 (443)
T PLN02793        144 HLTVEGGGTVNGMG-HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---Q------------------M  201 (443)
T ss_pred             eEEEEeceEEECCC-cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---C------------------e
Confidence            78888778886422 112321      01   123 789999999999984222111   1                  2


Q ss_pred             EEEEeecCcEEEeeeEEeCCC----ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEecC
Q 047411          156 VLKFDRCNNLRMNNMNFINSP----QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISNG  225 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~----~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~g  225 (226)
                      -+.+.+|+|++|+++++.++.    .-++++..|+||+|+|+.|.+     ..|.|-+- +|+||+|+||....|
T Consensus       202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~G  271 (443)
T PLN02793        202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPG  271 (443)
T ss_pred             EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCC
Confidence            377889999999999999853    236999999999999999997     45777774 578888888876543

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=98.35  E-value=1.8e-05  Score=66.24  Aligned_cols=158  Identities=18%  Similarity=0.121  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe-----eeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEe
Q 047411           42 DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH-----PITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQ  116 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~-----~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~  116 (226)
                      --.-|++|+ +++++   |.+|++-+| +|.-.     ||.+    |+ .++|+.+..-+...+.- +.+...++.+.+.
T Consensus        14 P~~Ti~~A~-~~a~~---g~~i~l~~G-tY~~~~ge~fPi~i----~~-gVtl~G~~~~kG~~~il-~~g~~~~~~I~g~   82 (246)
T PF07602_consen   14 PFKTITKAL-QAAQP---GDTIQLAPG-TYSEATGETFPIII----KP-GVTLIGNESNKGQIDIL-ITGGGTGPTISGG   82 (246)
T ss_pred             CHHHHHHHH-HhCCC---CCEEEECCc-eeccccCCcccEEe----cC-CeEEeecccCCCcceEE-ecCCceEEeEecc
Confidence            346799999 45565   789999999 99863     6777    46 88887652111000000 0000000111111


Q ss_pred             C----ccceEEEec--eEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCee-eEE
Q 047411          117 S----VDSLQIDGS--GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCI-GVE  189 (226)
Q Consensus       117 ~----~~nv~I~G~--G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~-~v~  189 (226)
                      +    .++++|.+.  .+|.|=  ..-        +.+  ..|+..++++.+ +.+|++.+|.+...-++.+.... +-.
T Consensus        83 ~~~~~~qn~tI~~~~~~~i~Gv--tIt--------N~n--~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~  149 (246)
T PF07602_consen   83 GPDLSGQNVTIILANNATISGV--TIT--------NPN--IARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPG  149 (246)
T ss_pred             CccccceeEEEEecCCCEEEEE--EEE--------cCC--CCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCc
Confidence            1    123333221  111110  000        000  236667777655 88888888888766666665553 333


Q ss_pred             EEeEEEECCCCCCCCCeEEecCeecE---EEEeeEEe
Q 047411          190 FGFLSIQAPGTSPNTDGIHIQASSNV---YIHNAHIS  223 (226)
Q Consensus       190 i~~~~i~~~~~~~ntDGi~~~~s~~v---~I~n~~i~  223 (226)
                      +.+..|.......+..||.+..+..-   +|+|+.|+
T Consensus       150 i~~~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~  186 (246)
T PF07602_consen  150 INGNVISGNSIYFNKTGISISDNAAPVENKIENNIIE  186 (246)
T ss_pred             ccceEeecceEEecCcCeEEEcccCCccceeeccEEE
Confidence            33333333211123347777654444   67777765

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=98.28  E-value=4.4e-06  Score=73.10  Aligned_cols=89  Identities=21%  Similarity=0.461  Sum_probs=71.0

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCce----EEEEeCee
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQT----HVTVMGCI  186 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~----~i~~~~s~  186 (226)
                      .++.+.+++|++|+|- ++- +. ..|                  .+.+.+|+|++|+++++.+++..    ++.+..|+
T Consensus        93 ~~i~~~~~~~~~i~~i-~~~-ns-p~w------------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~  151 (326)
T PF00295_consen   93 RLIRFNNCKNVTIEGI-TIR-NS-PFW------------------HIHINDCDNVTISNITINNPANSPNTDGIDIDSSK  151 (326)
T ss_dssp             ESEEEEEEEEEEEESE-EEE-S--SSE------------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEE
T ss_pred             ceeeeeeecceEEEee-Eec-CC-Cee------------------EEEEEccCCeEEcceEEEecCCCCCcceEEEEeee
Confidence            4789999999999983 221 11 112                  37888999999999999987653    69999999


Q ss_pred             eEEEEeEEEECCCCCCCCCeEEecCee-cEEEEeeEEecC
Q 047411          187 GVEFGFLSIQAPGTSPNTDGIHIQASS-NVYIHNAHISNG  225 (226)
Q Consensus       187 ~v~i~~~~i~~~~~~~ntDGi~~~~s~-~v~I~n~~i~~g  225 (226)
                      ||+|+|+.|.+     ..|.|-+-+.+ ||+|+||++..|
T Consensus       152 nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~g  186 (326)
T PF00295_consen  152 NVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGG  186 (326)
T ss_dssp             EEEEESEEEES-----SSESEEESSEECEEEEESEEEESS
T ss_pred             EEEEEEeeccc-----ccCcccccccccceEEEeEEEecc
Confidence            99999999997     46888887655 999999998765

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=98.21  E-value=4.2e-05  Score=68.69  Aligned_cols=112  Identities=14%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             cEEEEEeeEEEeeCCCCCcCC------C--CCcc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceE
Q 047411           86 DITIMLSGSIIAPNGPNEWKE------D--DKSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTV  156 (226)
Q Consensus        86 ~v~l~~~g~l~~~~~~~~~~~------~--~~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~  156 (226)
                      +++|...|+|...-. .-|..      .  ..+| ++.+.+++|++|+|- ++.  -...                  ..
T Consensus       123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gi-tl~--nSp~------------------w~  180 (404)
T PLN02188        123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGI-TSV--NSKF------------------FH  180 (404)
T ss_pred             eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCe-EEE--cCCC------------------eE
Confidence            788888888875332 22321      0  1134 788888999999982 221  1112                  24


Q ss_pred             EEEeecCcEEEeeeEEeCCCc----eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEec
Q 047411          157 LKFDRCNNLRMNNMNFINSPQ----THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       157 i~~~~~~nv~i~~i~i~ns~~----~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~  224 (226)
                      +.+..|++++|+++++.++..    -++.+..|++|+|+|++|.+     ..|+|-+- +++||+|+|+....
T Consensus       181 i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~  248 (404)
T PLN02188        181 IALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGP  248 (404)
T ss_pred             EEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcC
Confidence            888899999999999986431    35899999999999999997     34666663 45677777766543

>PLN02218 polygalacturonase ADPG

Probab=98.18  E-value=1.6e-05  Score=72.02  Aligned_cols=113  Identities=16%  Similarity=0.307  Sum_probs=79.5

Q ss_pred             cEEEEEe--eEEEeeCCCCCcCCC---------CCcc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCC
Q 047411           86 DITIMLS--GSIIAPNGPNEWKED---------DKSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLA  153 (226)
Q Consensus        86 ~v~l~~~--g~l~~~~~~~~~~~~---------~~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~r  153 (226)
                      +++|...  |+|...- ..-|...         ..+| ++.+.+++|++|+|- +|.  ....                 
T Consensus       157 ni~I~G~~~GtIDG~G-~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gi-tl~--nSp~-----------------  215 (431)
T PLN02218        157 NLSVDGGSTGVVDGNG-ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNL-RVR--NAQQ-----------------  215 (431)
T ss_pred             EEEEECCCCcEEeCCc-hhhhhcccccCCcCccCcCCEEEEEEccccEEEeCe-EEE--cCCC-----------------
Confidence            7888775  7776422 1123210         1133 788999999999983 221  1111                 


Q ss_pred             ceEEEEeecCcEEEeeeEEeCC---Cc-eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEecC
Q 047411          154 PTVLKFDRCNNLRMNNMNFINS---PQ-THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISNG  225 (226)
Q Consensus       154 p~~i~~~~~~nv~i~~i~i~ns---~~-~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~g  225 (226)
                       .-+.+.+|+|++|+|+++.++   |. -++++..|+||+|+|+.|.+     ..|.|-+- +|+||+|+||++..|
T Consensus       216 -w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~n~~c~~G  286 (431)
T PLN02218        216 -IQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQINDITCGPG  286 (431)
T ss_pred             -EEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEEeEEEECC
Confidence             248889999999999999874   22 36999999999999999997     45777775 478899998887644

>PLN02497 probable pectinesterase

Probab=98.10  E-value=0.00016  Score=63.18  Aligned_cols=80  Identities=11%  Similarity=0.102  Sum_probs=45.9

Q ss_pred             chhhHHHHHHHHHhhhhcc-cc-----cceEEeeecCccCCCCcchHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEee
Q 047411            3 ADLCAILYFLYLISTASIR-IN-----ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHP   75 (226)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~-----~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~   75 (226)
                      .|+.++||.++|+|+.... +.     ++.+.|..     ||. -|-..||+||+ +++... +..+|+|-+| +|+-. 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Va~-----dGs-Gdf~TIq~AId-avP~~~~~~~~I~Ik~G-~Y~Ek-   74 (331)
T PLN02497          4 HRIIIGLIALCCFCLPHLIEAKPFGVYQQQVFVDQ-----SGH-GNFTTIQSAID-SVPSNNKHWFCINVKAG-LYREK-   74 (331)
T ss_pred             eeehHHHHHHHHhhcchhhhcCCccccceEEEECC-----CCC-CCccCHHHHHh-hccccCCceEEEEEeCc-EEEEE-
Confidence            4677788877766664321 11     12333432     442 34778999995 555421 0236999999 99754 


Q ss_pred             eeeeCCCcCccEEEEEee
Q 047411           76 ITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        76 l~l~~~~ks~~v~l~~~g   93 (226)
                      +.++.. |. +++|+.+|
T Consensus        75 V~Ip~~-k~-~itl~G~g   90 (331)
T PLN02497         75 VKIPYD-KP-FIVLVGAG   90 (331)
T ss_pred             EEecCC-CC-cEEEEecC
Confidence            233211 44 78877653

>PLN02155 polygalacturonase

Probab=98.03  E-value=3.8e-05  Score=68.77  Aligned_cols=87  Identities=17%  Similarity=0.250  Sum_probs=64.6

Q ss_pred             eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc----eEEEEeCeee
Q 047411          112 WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ----THVTVMGCIG  187 (226)
Q Consensus       112 ~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~----~~i~~~~s~~  187 (226)
                      ++.+.+.+|++|+|- ++-  -                  .....+.+.+|+|++|+++++.++..    -++++..|+|
T Consensus       147 ~i~~~~~~nv~i~gi-tl~--n------------------Sp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~n  205 (394)
T PLN02155        147 SISFNSAKDVIISGV-KSM--N------------------SQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTG  205 (394)
T ss_pred             ceeEEEeeeEEEECe-EEE--c------------------CCCeEEEEECeeeEEEEEEEEECCCCCCCCCcccccccee
Confidence            688888999999982 221  1                  11135888899999999999998532    3588999999


Q ss_pred             EEEEeEEEECCCCCCCCCeEEecC-eecEEEEeeEEec
Q 047411          188 VEFGFLSIQAPGTSPNTDGIHIQA-SSNVYIHNAHISN  224 (226)
Q Consensus       188 v~i~~~~i~~~~~~~ntDGi~~~~-s~~v~I~n~~i~~  224 (226)
                      |+|+|+.|.+     ..|.|-+.+ |+||+|+||.+..
T Consensus       206 V~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~  238 (394)
T PLN02155        206 VTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGP  238 (394)
T ss_pred             EEEEeeEEec-----CCceEEcCCCCceEEEEEEEEEC
Confidence            9999999997     456676653 6677777776654

>PLN02480 Probable pectinesterase

Probab=97.91  E-value=0.00099  Score=58.54  Aligned_cols=50  Identities=14%  Similarity=0.141  Sum_probs=30.6

Q ss_pred             CCCcchHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411           37 DGNADDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS   92 (226)
Q Consensus        37 dg~~ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~   92 (226)
                      || ..|-..||+||+ +++... +..+|+|.+| +|. ..+.++.. |. +++|+.+
T Consensus        55 ~G-~g~f~TIQ~AId-aap~~~~~~~~I~Ik~G-vY~-E~V~I~~~-kp-~ItL~G~  105 (343)
T PLN02480         55 NG-KGDFTSVQSAID-AVPVGNSEWIIVHLRKG-VYR-EKVHIPEN-KP-FIFMRGN  105 (343)
T ss_pred             CC-CCCcccHHHHHh-hCccCCCceEEEEEcCc-EEE-EEEEECCC-Cc-eEEEEec
Confidence            44 356889999995 555411 0124889999 998 45555311 33 5676654

>PLN03010 polygalacturonase

Probab=97.90  E-value=0.00029  Score=63.42  Aligned_cols=86  Identities=17%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             cEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcE
Q 047411           86 DITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNL  165 (226)
Q Consensus        86 ~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv  165 (226)
                      +++|...|+|...-  ..|-     .++.+.+.+|++|+|- ++-  -...                  .-+.+.+|+++
T Consensus       140 nv~I~G~G~IDG~G--~~ww-----~~l~~~~~~nv~v~gi-tl~--nsp~------------------~~i~i~~~~nv  191 (409)
T PLN03010        140 GLMIDGSGTIDGRG--SSFW-----EALHISKCDNLTINGI-TSI--DSPK------------------NHISIKTCNYV  191 (409)
T ss_pred             ccEEeeceEEeCCC--cccc-----ceEEEEeecCeEEeee-EEE--cCCc------------------eEEEEeccccE
Confidence            77777778875311  1221     2688889999999983 221  1111                  24788899999


Q ss_pred             EEeeeEEeCCCc----eEEEEeCeeeEEEEeEEEECCC
Q 047411          166 RMNNMNFINSPQ----THVTVMGCIGVEFGFLSIQAPG  199 (226)
Q Consensus       166 ~i~~i~i~ns~~----~~i~~~~s~~v~i~~~~i~~~~  199 (226)
                      +|+++++.++..    -++++..|++|+|+|+.|.+..
T Consensus       192 ~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gD  229 (409)
T PLN03010        192 AISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGD  229 (409)
T ss_pred             EEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCC
Confidence            999999998542    3589999999999999999854

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=97.86  E-value=0.00014  Score=63.28  Aligned_cols=94  Identities=13%  Similarity=0.073  Sum_probs=59.1

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEE
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEF  190 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i  190 (226)
                      ..|.+.++++++|++- .+.+++..-+             .....++.+..|++++|++.++.+...-++.+..|++++|
T Consensus        78 ~GI~v~~s~~i~I~n~-~i~~~~~~~~-------------~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v  143 (314)
T TIGR03805        78 DGVKVKGSDGIIIRRL-RVEWTGGPKS-------------SNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVV  143 (314)
T ss_pred             CeEEEeCCCCEEEEee-EEEeccCccc-------------cCCcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEE
Confidence            4566777888888873 4444332111             1123356667777777777777776555677777777777


Q ss_pred             EeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          191 GFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       191 ~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      +++++..     +..||+++.|.++.|+++.+.
T Consensus       144 ~nN~~~~-----n~~GI~i~~S~~~~v~~N~~~  171 (314)
T TIGR03805       144 RNNVAEE-----NVAGIEIENSQNADVYNNIAT  171 (314)
T ss_pred             ECCEEcc-----CcceEEEEecCCcEEECCEEe
Confidence            7777754     445666666666666666654

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00054  Score=58.40  Aligned_cols=112  Identities=20%  Similarity=0.290  Sum_probs=77.5

Q ss_pred             EEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEE
Q 047411           87 ITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLR  166 (226)
Q Consensus        87 v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~  166 (226)
                      +.+.+.|++.++. ++       ...+.+...+|.||.|.|+   ++                 ..-...|.+....||.
T Consensus        77 ~ii~v~Gti~~s~-ps-------~~k~~iki~sNkTivG~g~---~a-----------------~~~g~gl~i~~a~NVI  128 (345)
T COG3866          77 VIIVVKGTITAST-PS-------DKKITIKIGSNKTIVGSGA---DA-----------------TLVGGGLKIRDAGNVI  128 (345)
T ss_pred             EEEEEcceEeccC-CC-------CceEEEeeccccEEEeecc---cc-----------------EEEeceEEEEeCCcEE
Confidence            4666778887652 11       1237788889999998531   00                 1122358888899999


Q ss_pred             EeeeEEeCCCc-----eEEEE-eCeeeEEEEeEEEECCCC---CCCCCe-EEec-CeecEEEEeeEEecCC
Q 047411          167 MNNMNFINSPQ-----THVTV-MGCIGVEFGFLSIQAPGT---SPNTDG-IHIQ-ASSNVYIHNAHISNGT  226 (226)
Q Consensus       167 i~~i~i~ns~~-----~~i~~-~~s~~v~i~~~~i~~~~~---~~ntDG-i~~~-~s~~v~I~n~~i~~gD  226 (226)
                      |+|++|+..+.     -.|.+ ..+.|++|+++++.....   ..-.|| +|+. .+.+|+|.+|++..+|
T Consensus       129 irNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~  199 (345)
T COG3866         129 IRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHD  199 (345)
T ss_pred             EEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCC
Confidence            99999999884     35777 788999999999998432   123455 4553 4678888888887654

>PLN02682 pectinesterase family protein

Probab=97.55  E-value=0.0074  Score=53.52  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=30.3

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -|-.-||+||+ +++... +..+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus        80 Gdf~TIQ~AId-avP~~~~~r~vI~Ik~G-~Y~Ek-V~Ip~~-k~-~Itl~G~g  128 (369)
T PLN02682         80 GDFTTIQAAID-SLPVINLVRVVIKVNAG-TYREK-VNIPPL-KA-YITLEGAG  128 (369)
T ss_pred             CCccCHHHHHh-hccccCCceEEEEEeCc-eeeEE-EEEecc-Cc-eEEEEecC
Confidence            45778999995 555421 0357899999 99754 333211 45 78887653

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=97.52  E-value=0.00044  Score=63.97  Aligned_cols=93  Identities=16%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc---eEEEEeCeeeE
Q 047411          112 WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ---THVTVMGCIGV  188 (226)
Q Consensus       112 ~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~---~~i~~~~s~~v  188 (226)
                      .+.+.+++||.+.|..+..   ..|                  ..+++..|+|++++|+++.+...   -++.+..|+|+
T Consensus       240 ~~~l~~c~NV~~~g~~i~n---s~~------------------~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~Nv  298 (542)
T COG5434         240 TVVLKGCRNVLLEGLNIKN---SPL------------------WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNV  298 (542)
T ss_pred             eEEEeccceEEEeeeEecC---CCc------------------EEEeeecccCceecceEEECCCCCCCCccccccceeE
Confidence            5667778888888843221   112                  35888999999999999998743   27889999999


Q ss_pred             EEEeEEEECCCC------CCCCCe-EEecCeecEEEEeeEEecC
Q 047411          189 EFGFLSIQAPGT------SPNTDG-IHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       189 ~i~~~~i~~~~~------~~ntDG-i~~~~s~~v~I~n~~i~~g  225 (226)
                      .|++++|.+-.+      +...|+ =....|++++|+||++..|
T Consensus       299 lI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g  342 (542)
T COG5434         299 LIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG  342 (542)
T ss_pred             EEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc
Confidence            999999998433      123332 1234578999999999765

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.51  E-value=0.0046  Score=51.31  Aligned_cols=64  Identities=23%  Similarity=0.191  Sum_probs=48.6

Q ss_pred             eEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEec
Q 047411          155 TVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISN  224 (226)
Q Consensus       155 ~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~  224 (226)
                      ..+.+..+.+.+|++.++.+... ++.+..+.+.+|++.+|.+     +..||.+..+.+.+|+++.|..
T Consensus        80 ~Gi~l~~s~~~~I~~N~i~~n~~-GI~l~~s~~~~I~~N~i~~-----~~~GI~l~~s~~n~I~~N~i~~  143 (236)
T PF05048_consen   80 YGIYLMGSSNNTISNNTISNNGY-GIYLYGSSNNTISNNTISN-----NGYGIYLSSSSNNTITGNTISN  143 (236)
T ss_pred             CCEEEEcCCCcEEECCEecCCCc-eEEEeeCCceEEECcEEeC-----CCEEEEEEeCCCCEEECeEEeC
Confidence            45777777766888888887766 8888888888888888863     6678888887888888887764

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PLN02176 putative pectinesterase

Probab=97.40  E-value=0.025  Score=49.67  Aligned_cols=48  Identities=15%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -|-..||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus        49 Gdf~TIq~AId-avP~~~~~~~~I~Ik~G-vY~Ek-V~Ip~~-k~-~vtl~G~g   97 (340)
T PLN02176         49 RYFKTVQSAID-SIPLQNQNWIRILIQNG-IYREK-VTIPKE-KG-YIYMQGKG   97 (340)
T ss_pred             CCccCHHHHHh-hchhcCCceEEEEECCc-EEEEE-EEECCC-Cc-cEEEEEcC
Confidence            35778999995 555421 0346889999 99854 333211 55 89998874

>PLN02773 pectinesterase

Probab=97.39  E-value=0.0078  Score=52.42  Aligned_cols=46  Identities=15%  Similarity=0.158  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411           42 DSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS   92 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~   92 (226)
                      |-.-||+||+ +++... +.-+|+|.+| +|.- .|.++.. |. +++|+.+
T Consensus        16 df~TIq~Aid-a~P~~~~~~~~I~Ik~G-~Y~E-~V~I~~~-k~-~itl~G~   62 (317)
T PLN02773         16 DYCTVQDAID-AVPLCNRCRTVIRVAPG-VYRQ-PVYVPKT-KN-LITLAGL   62 (317)
T ss_pred             CccCHHHHHh-hchhcCCceEEEEEeCc-eEEE-EEEECcC-Cc-cEEEEeC
Confidence            4778999995 555421 0347899999 9974 4444311 33 6777665

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=97.31  E-value=0.00064  Score=51.91  Aligned_cols=62  Identities=24%  Similarity=0.293  Sum_probs=26.5

Q ss_pred             EEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      ++.+..+..++|++.+|.+ ...++.+....+++++++++...     ..|+.+..+..++|++|.|.
T Consensus        25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~~~i~~~~i~   86 (158)
T PF13229_consen   25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-----GSGIYVSGSSNITIENNRIE   86 (158)
T ss_dssp             CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEE
T ss_pred             EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-----cceEEEEecCCceecCcEEE
Confidence            4444444444455555544 33444444444455555555442     14555555555555555554

>PLN02665 pectinesterase family protein

Probab=97.25  E-value=0.019  Score=51.01  Aligned_cols=47  Identities=21%  Similarity=0.169  Sum_probs=28.9

Q ss_pred             chHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411           41 DDSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS   92 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~   92 (226)
                      -|-..||+||+ +++...+ ..+|+|.+| +|.-. +.++.. |. +++|+.+
T Consensus        78 Gdf~TIq~AId-aiP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~-kp-~Itl~G~  125 (366)
T PLN02665         78 GDFKTITDAIK-SIPAGNTQRVIIDIGPG-EYNEK-ITIDRS-KP-FVTLYGS  125 (366)
T ss_pred             CCccCHHHHHh-hCcccCCceEEEEEeCc-EEEEE-EEecCC-CC-EEEEEec
Confidence            35778999995 5554210 346889999 99853 333211 34 6777654

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=97.22  E-value=0.027  Score=49.03  Aligned_cols=97  Identities=12%  Similarity=0.227  Sum_probs=51.1

Q ss_pred             cceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEE
Q 047411          110 SKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVE  189 (226)
Q Consensus       110 ~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~  189 (226)
                      +..+++. +.+++++| -+..|.|....+             .....+.-...+.-.|+...+... .+++.+..+.++.
T Consensus        69 G~~vtv~-aP~~~v~G-l~vr~sg~~lp~-------------m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~  132 (408)
T COG3420          69 GSYVTVA-APDVIVEG-LTVRGSGRSLPA-------------MDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVR  132 (408)
T ss_pred             ccEEEEe-CCCceeee-EEEecCCCCccc-------------ccceEEeccCcccceEEccccccc-ceEEEEeccCceE
Confidence            4456665 57888887 366666654322             111233334444555555555544 3466666666666


Q ss_pred             EEeEEEECCCC---CCCCCeEEecCeecEEEEeeEE
Q 047411          190 FGFLSIQAPGT---SPNTDGIHIQASSNVYIHNAHI  222 (226)
Q Consensus       190 i~~~~i~~~~~---~~ntDGi~~~~s~~v~I~n~~i  222 (226)
                      |++++|....+   ..-.+||.++.++++.|..+.|
T Consensus       133 i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndi  168 (408)
T COG3420         133 IEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDI  168 (408)
T ss_pred             EEeeEEeeccccchhhccCceEEEcCCCcEEEcCcc
Confidence            66666665432   2334555555555555554444

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.21  E-value=0.0047  Score=51.23  Aligned_cols=87  Identities=24%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             cceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEE
Q 047411          110 SKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVE  189 (226)
Q Consensus       110 ~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~  189 (226)
                      +..+.+....+++|++. +|.+.                     ...+.+..+.+++|++.++.+.. .++.+..+.+.+
T Consensus        35 ~~gi~~~~s~~~~I~~n-~i~~~---------------------~~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~   91 (236)
T PF05048_consen   35 RDGIYVENSDNNTISNN-TISNN---------------------RYGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNT   91 (236)
T ss_pred             CCEEEEEEcCCeEEEee-EEECC---------------------CeEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcE
Confidence            34566666777777773 33322                     24688999999999999999987 889999998889


Q ss_pred             EEeEEEECCCCCCCCCeEEecCeecEEEEeeEEec
Q 047411          190 FGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISN  224 (226)
Q Consensus       190 i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~  224 (226)
                      |++.++..     +..||.+..+++.+|+++.|..
T Consensus        92 I~~N~i~~-----n~~GI~l~~s~~~~I~~N~i~~  121 (236)
T PF05048_consen   92 ISNNTISN-----NGYGIYLYGSSNNTISNNTISN  121 (236)
T ss_pred             EECCEecC-----CCceEEEeeCCceEEECcEEeC
Confidence            99999987     4459999999999999999863

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=97.20  E-value=0.0056  Score=55.04  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCC-CcCccEEEEEe--eEEEeeCCCCCcCCCCCcceEEEeCc
Q 047411           42 DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGP-CKSSDITIMLS--GSIIAPNGPNEWKEDDKSKWFDIQSV  118 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~-~ks~~v~l~~~--g~l~~~~~~~~~~~~~~~~~i~~~~~  118 (226)
                      +.++||+||+ ++++   |.+|+++.| +|.-..|.+.+. .++.+++|.-+  |....+          ....+.+.+ 
T Consensus         3 s~~~lq~Ai~-~a~p---GD~I~L~~G-ty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~----------G~s~l~i~G-   66 (425)
T PF14592_consen    3 SVAELQSAID-NAKP---GDTIVLADG-TYKDVEIVFKGSGTAAKPITLRAENPGKVVIT----------GESNLRISG-   66 (425)
T ss_dssp             SHHHHHHHHH-H--T---T-EEEE-SE-EEET-EEEE-S--BTTB-EEEEESSTTSEEEE----------ES-EEEE-S-
T ss_pred             CHHHHHHHHH-hCCC---CCEEEECCc-eeecceEEEEecccCCCCEEEEecCCCeEEEe----------cceeEEEEe-
Confidence            4689999995 5565   899999999 997435555321 01124555443  211100          012344443 


Q ss_pred             cceEEEeceEE-eCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC--------ceEE-EEeCeeeE
Q 047411          119 DSLQIDGSGTI-DGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP--------QTHV-TVMGCIGV  188 (226)
Q Consensus       119 ~nv~I~G~G~i-dG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~--------~~~i-~~~~s~~v  188 (226)
                      +.++|+|. .+ +|...       .   ..-. ..|...-. ..|.++++.++.|.+-.        .|-. .....++-
T Consensus        67 ~yl~v~GL-~F~ng~~~-------~---~~vi-~fr~~~~~-~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~N  133 (425)
T PF14592_consen   67 SYLVVSGL-KFKNGYTP-------T---GAVI-SFRNGGDA-SYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHN  133 (425)
T ss_dssp             SSEEEES--EEEEE----------T---TT---TTS--SEE-E-SSS-EEES-EEES--SS-S-SEEE---TT-----S-
T ss_pred             eeEEEeCe-EEecCCCC-------C---CceE-EeecCCCc-ceecceEEEeEEeeccCCcccccCceEEEEEEeeccCc
Confidence            55555552 22 11100       0   0000 11211111 24788888888887531        1321 02467788


Q ss_pred             EEEeEEEECCCCCCCCCeEE--ec----CeecEEEEeeEEe
Q 047411          189 EFGFLSIQAPGTSPNTDGIH--IQ----ASSNVYIHNAHIS  223 (226)
Q Consensus       189 ~i~~~~i~~~~~~~ntDGi~--~~----~s~~v~I~n~~i~  223 (226)
                      +|+++.+.+......+=.++  ..    ...+-+|++++|.
T Consensus       134 rvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~  174 (425)
T PF14592_consen  134 RVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFG  174 (425)
T ss_dssp             EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE
T ss_pred             eEEccEeeccccCCcEEEEEecccCccccccCceEEecccc
Confidence            99999999853333333333  21    2346678998886

>PLN02634 probable pectinesterase

Probab=97.19  E-value=0.022  Score=50.28  Aligned_cols=51  Identities=22%  Similarity=0.264  Sum_probs=31.8

Q ss_pred             CCCcchHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           37 DGNADDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        37 dg~~ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      ||. -|-..||+||+ +++.. .+..+|+|-+| +|.-. +.++.. |. +++|+.+|
T Consensus        63 dGs-Gdf~TIQaAId-a~P~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~-k~-~ItL~G~g  114 (359)
T PLN02634         63 NGH-GDFRSVQDAVD-SVPKNNTMSVTIKINAG-FYREK-VVVPAT-KP-YITFQGAG  114 (359)
T ss_pred             CCC-CCccCHHHHHh-hCcccCCccEEEEEeCc-eEEEE-EEEcCC-CC-eEEEEecC
Confidence            443 35778999995 55542 10347899999 99754 333211 44 78887764

>PRK10531 acyl-CoA thioesterase; Provisional

Probab=97.18  E-value=0.025  Score=50.99  Aligned_cols=42  Identities=17%  Similarity=0.194  Sum_probs=32.3

Q ss_pred             EeecCcEEEeeeEEeCCCc--------eEEE-EeCeeeEEEEeEEEECCCC
Q 047411          159 FDRCNNLRMNNMNFINSPQ--------THVT-VMGCIGVEFGFLSIQAPGT  200 (226)
Q Consensus       159 ~~~~~nv~i~~i~i~ns~~--------~~i~-~~~s~~v~i~~~~i~~~~~  200 (226)
                      ....+++..+||+|+|+-.        ..+. ....+.+.+.+|++...++
T Consensus       202 ~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD  252 (422)
T PRK10531        202 WSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD  252 (422)
T ss_pred             EEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc
Confidence            3468999999999999943        2222 3468899999999998664

>smart00656 Amb_all Amb_all domain

Probab=97.13  E-value=0.005  Score=49.79  Aligned_cols=70  Identities=20%  Similarity=0.285  Sum_probs=53.3

Q ss_pred             eEEEEeecCcEEEeeeEEeCCCc------eEEEEeCeeeEEEEeEEEECCC----CCCCCCeE-Eec-CeecEEEEeeEE
Q 047411          155 TVLKFDRCNNLRMNNMNFINSPQ------THVTVMGCIGVEFGFLSIQAPG----TSPNTDGI-HIQ-ASSNVYIHNAHI  222 (226)
Q Consensus       155 ~~i~~~~~~nv~i~~i~i~ns~~------~~i~~~~s~~v~i~~~~i~~~~----~~~ntDGi-~~~-~s~~v~I~n~~i  222 (226)
                      ..|.+..++||.|++++|++...      -++.+..+++|.|++|++....    ...-.||. ++. .+.+|+|.+|.+
T Consensus        32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f  111 (190)
T smart00656       32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF  111 (190)
T ss_pred             eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence            35778789999999999998744      3788899999999999999741    11224664 443 478999999988


Q ss_pred             ec
Q 047411          223 SN  224 (226)
Q Consensus       223 ~~  224 (226)
                      ..
T Consensus       112 ~~  113 (190)
T smart00656      112 HN  113 (190)
T ss_pred             ec
Confidence            64

>PLN02170 probable pectinesterase/pectinesterase inhibitor

Probab=97.13  E-value=0.017  Score=53.50  Aligned_cols=50  Identities=12%  Similarity=0.220  Sum_probs=30.2

Q ss_pred             CCCcchHHHHHHHHHHhccc--CCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411           37 DGNADDSMAFIKAWNNTCSA--TAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS   92 (226)
Q Consensus        37 dg~~ddt~aiq~Ai~~a~~~--~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~   92 (226)
                      ||. -|-.-||+||+++...  .. .-+|+|.+| +|.-. +.++.. |. +++|+.+
T Consensus       232 dGs-G~f~TIq~AI~a~~~~~~~~-r~vI~Ik~G-vY~E~-V~I~~~-k~-nItl~G~  283 (529)
T PLN02170        232 DGS-GTHKTIGEALLSTSLESGGG-RTVIYLKAG-TYHEN-LNIPTK-QK-NVMLVGD  283 (529)
T ss_pred             CCC-CchhhHHHHHHhcccccCCc-eEEEEEeCC-eeEEE-EecCCC-Cc-eEEEEEc
Confidence            443 3577899999643332  22 457999999 99743 333211 34 6776655

>PLN02671 pectinesterase

Probab=97.12  E-value=0.02  Score=50.69  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=29.2

Q ss_pred             chHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411           41 DDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS   92 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~   92 (226)
                      -|-.-||+||+ +++.. .+..+|+|.+| +|.-. +.++.. |. +++|+.+
T Consensus        69 Gdf~TIQ~AId-avP~~~~~~~~I~Ik~G-vY~Ek-V~I~~~-k~-~Itl~G~  116 (359)
T PLN02671         69 GDSLTVQGAVD-MVPDYNSQRVKIYILPG-IYREK-VLVPKS-KP-YISFIGN  116 (359)
T ss_pred             CCccCHHHHHH-hchhcCCccEEEEEeCc-eEEEE-EEECCC-CC-eEEEEec
Confidence            34778999995 55442 10347999999 99754 333211 44 6777654

>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length

Probab=96.99  E-value=0.0012  Score=42.84  Aligned_cols=38  Identities=29%  Similarity=0.415  Sum_probs=22.4

Q ss_pred             ccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeee
Q 047411           34 AAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPI   76 (226)
Q Consensus        34 A~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l   76 (226)
                      |+|||++|||+||.+|++ +.+.   | .++=-.|.||.++++
T Consensus         1 A~GDGvtdDt~A~~a~l~-a~~~---g-~~IDg~GlTykVs~l   38 (67)
T PF12218_consen    1 AKGDGVTDDTAAITAALE-ASPV---G-RKIDGAGLTYKVSSL   38 (67)
T ss_dssp             ---CCCCE-HHHHHHHHH-HS-T---T-S-EE-TT-EEEESS-
T ss_pred             CCCccccCcHHHHHHHHh-ccCC---C-eEEecCCceEEEeeC
Confidence            689999999999999994 4332   3 444456669998754

The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.

>PLN02933 Probable pectinesterase/pectinesterase inhibitor

Probab=96.95  E-value=0.037  Score=51.42  Aligned_cols=48  Identities=13%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -+-..||+||+ +++... +.-+|+|.+| +|.- .+.++.. |. +++|+.+|
T Consensus       228 G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~itl~G~g  276 (530)
T PLN02933        228 GNFTTINEAVS-AAPNSSETRFIIYIKGG-EYFE-NVELPKK-KT-MIMFIGDG  276 (530)
T ss_pred             CCccCHHHHHH-hchhcCCCcEEEEEcCc-eEEE-EEEecCC-Cc-eEEEEEcC
Confidence            34678999995 554421 0357999999 9984 4444311 33 67776553

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=96.94  E-value=0.0059  Score=55.11  Aligned_cols=68  Identities=10%  Similarity=0.134  Sum_probs=49.3

Q ss_pred             EEEEeecCcEEEeeeEEeCCC------ceEEEEeCeeeEEEEeEEEECCC-C-----------------CCCCCeEEecC
Q 047411          156 VLKFDRCNNLRMNNMNFINSP------QTHVTVMGCIGVEFGFLSIQAPG-T-----------------SPNTDGIHIQA  211 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~------~~~i~~~~s~~v~i~~~~i~~~~-~-----------------~~ntDGi~~~~  211 (226)
                      ++.-...++++|+|++|+++.      ...+++..|++++|+++++.+.. .                 .....+|+++.
T Consensus       108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~  187 (455)
T TIGR03808       108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFD  187 (455)
T ss_pred             EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEec
Confidence            455567999999999999985      34688899999999999999852 1                 01223444555


Q ss_pred             eecEEEEeeEEe
Q 047411          212 SSNVYIHNAHIS  223 (226)
Q Consensus       212 s~~v~I~n~~i~  223 (226)
                      |++.+|++++|+
T Consensus       188 S~g~~V~~N~I~  199 (455)
T TIGR03808       188 ALGLIVARNTII  199 (455)
T ss_pred             cCCCEEECCEEE
Confidence            557777777765

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional

Probab=96.86  E-value=0.032  Score=52.11  Aligned_cols=113  Identities=15%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             chHHHHHHHHHHhcccCCC----CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEe
Q 047411           41 DDSMAFIKAWNNTCSATAK----SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQ  116 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g~----g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~  116 (226)
                      -+-.-||+||+ +++...+    .-+|+|.+| +|.-. +.++.. |. +++|..+|                       
T Consensus       233 G~f~TI~~Av~-a~p~~~~~~~~r~vI~vk~G-~Y~E~-V~i~~~-k~-~i~l~G~g-----------------------  284 (538)
T PLN03043        233 DNFTTITDAIA-AAPNNSKPEDGYFVIYAREG-YYEEY-VVVPKN-KK-NIMLIGDG-----------------------  284 (538)
T ss_pred             CCCcCHHHHHH-hccccCCCCcceEEEEEcCe-eeEEE-EEeCCC-CC-cEEEEecC-----------------------
Confidence            34778999995 5554210    237999999 99743 333211 33 66665543                       


Q ss_pred             CccceEEEece-EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCce----EEE-EeCeeeEEE
Q 047411          117 SVDSLQIDGSG-TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQT----HVT-VMGCIGVEF  190 (226)
Q Consensus       117 ~~~nv~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~----~i~-~~~s~~v~i  190 (226)
                       .....|+|.- ..||     |.            ..+...+.+ ..+++..+|++|+|+...    .+. ...++...+
T Consensus       285 -~~~tiIt~~~~~~dg-----~~------------T~~saT~~v-~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f  345 (538)
T PLN03043        285 -INKTIITGNHSVVDG-----WT------------TFNSSTFAV-SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTF  345 (538)
T ss_pred             -CCCeEEEeCCccCCC-----Cc------------cccceEEEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEE
Confidence             1222233210 1111     11            122223444 467888888888886421    222 245677788


Q ss_pred             EeEEEECCCC
Q 047411          191 GFLSIQAPGT  200 (226)
Q Consensus       191 ~~~~i~~~~~  200 (226)
                      .+|++.+..+
T Consensus       346 ~~C~~~gyQD  355 (538)
T PLN03043        346 YRCSFEGYQD  355 (538)
T ss_pred             EeeEEeccCc
Confidence            8888887654

>PLN02708 Probable pectinesterase/pectinesterase inhibitor

Probab=96.85  E-value=0.04  Score=51.59  Aligned_cols=47  Identities=13%  Similarity=0.115  Sum_probs=29.5

Q ss_pred             chHHHHHHHHHHhccc---CCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSA---TAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~---~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -+-.-||+||+ +++.   .+ .-+|+|.+| +|.-. +.++.. |. +++|..+|
T Consensus       251 g~f~TIq~Av~-a~p~~~~~~-r~vI~vk~G-vY~E~-V~i~~~-k~-~v~l~G~g  300 (553)
T PLN02708        251 CCYKTVQEAVN-AAPDNNGDR-KFVIRIKEG-VYEET-VRVPLE-KK-NVVFLGDG  300 (553)
T ss_pred             CCccCHHHHHH-hhhhccCCc-cEEEEEeCc-eEEee-eeecCC-Cc-cEEEEecC
Confidence            34678999995 4544   12 458999999 99853 333211 33 77776653

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=96.83  E-value=0.005  Score=52.64  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=56.2

Q ss_pred             EEEEeecCcEEEeeeEEe-CCCceEEEEeCeeeEEEEeEEEECCC-CCCCCCeEEe-cCeecEEEEeeEEecC
Q 047411          156 VLKFDRCNNLRMNNMNFI-NSPQTHVTVMGCIGVEFGFLSIQAPG-TSPNTDGIHI-QASSNVYIHNAHISNG  225 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~-ns~~~~i~~~~s~~v~i~~~~i~~~~-~~~ntDGi~~-~~s~~v~I~n~~i~~g  225 (226)
                      .+.+.-|.|.+|.|+--. ---.|++.+.+.+||.|+|++|+... .-|+-|+|.+ ..+.|++|++|.+..|
T Consensus        94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~  166 (345)
T COG3866          94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGG  166 (345)
T ss_pred             eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccc
Confidence            388888999999987521 11247899999999999999999843 2356799999 7899999999999864

>PLN02304 probable pectinesterase

Probab=96.83  E-value=0.055  Score=48.18  Aligned_cols=48  Identities=19%  Similarity=0.205  Sum_probs=30.4

Q ss_pred             chHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -|-.-||+||+ +++.. .+..+|+|.+| +|.-. |.++.. |. +++|+.+|
T Consensus        85 Gdf~TIQ~AId-avP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~-K~-~Itl~G~g  133 (379)
T PLN02304         85 CNFTTVQSAVD-AVGNFSQKRNVIWINSG-IYYEK-VTVPKT-KP-NITFQGQG  133 (379)
T ss_pred             CCccCHHHHHh-hCcccCCCcEEEEEeCe-EeEEE-EEECCC-CC-cEEEEecC
Confidence            34678999995 55441 10456899999 99743 333211 45 78887764

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3

Probab=96.82  E-value=0.016  Score=50.19  Aligned_cols=47  Identities=19%  Similarity=0.277  Sum_probs=26.0

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS   92 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~   92 (226)
                      -|-..||+||+ +++... ..-+|+|.+| +|.-. +.++.. |. +++|..+
T Consensus        10 gdf~TIq~Aid-a~p~~~~~~~~I~I~~G-~Y~E~-V~i~~~-k~-~v~l~G~   57 (298)
T PF01095_consen   10 GDFTTIQAAID-AAPDNNTSRYTIFIKPG-TYREK-VTIPRS-KP-NVTLIGE   57 (298)
T ss_dssp             SSBSSHHHHHH-HS-SSSSS-EEEEE-SE-EEE---EEE-ST-ST-TEEEEES
T ss_pred             CCccCHHHHHH-hchhcCCceEEEEEeCe-eEccc-cEeccc-cc-eEEEEec
Confidence            45667999995 455421 0347999999 99743 444311 23 6776654

1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....

>PLN02506 putative pectinesterase/pectinesterase inhibitor

Probab=96.82  E-value=0.038  Score=51.51  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHhcccC--CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411           42 DSMAFIKAWNNTCSAT--AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS   92 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~--g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~   92 (226)
                      +-.-||+||+ +++..  + .-+|+|.+| +|.-. +.++.. |. +++|+.+
T Consensus       243 ~f~TIq~Av~-a~p~~~~~-r~vI~Vk~G-vY~E~-V~I~~~-k~-~i~l~G~  289 (537)
T PLN02506        243 HYRTITEAIN-EAPNHSNR-RYIIYVKKG-VYKEN-IDMKKK-KT-NIMLVGD  289 (537)
T ss_pred             CccCHHHHHH-hchhcCCC-cEEEEEeCC-eeeEE-EeccCC-Cc-eEEEEEc
Confidence            4678999995 55442  2 458999999 99754 222210 33 6666655

>PLN02416 probable pectinesterase/pectinesterase inhibitor

Probab=96.81  E-value=0.032  Score=52.13  Aligned_cols=48  Identities=13%  Similarity=0.207  Sum_probs=29.0

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -|-.-||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       240 G~f~TIq~Ai~-a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~-k~-~i~l~G~g  288 (541)
T PLN02416        240 GNFSTITDAIN-FAPNNSNDRIIIYVREG-VYEEN-VEIPIY-KT-NIVLIGDG  288 (541)
T ss_pred             CCccCHHHHHH-hhhhcCCceEEEEEeCc-eeEEE-EecCCC-Cc-cEEEEecC
Confidence            35778999995 454421 0346899999 99753 333211 34 67776553

>PLN02484 probable pectinesterase/pectinesterase inhibitor

Probab=96.81  E-value=0.057  Score=50.95  Aligned_cols=48  Identities=8%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           42 DSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      |-.-||+||+ +++... +.-+|+|.+| +|.-..+.++.. |. +++|+.+|
T Consensus       283 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~~-k~-ni~l~G~g  331 (587)
T PLN02484        283 TFKTISEAIK-KAPEHSSRRTIIYVKAG-RYEENNLKVGRK-KT-NLMFIGDG  331 (587)
T ss_pred             CcccHHHHHH-hccccCCCcEEEEEeCC-EEEEEEEEECCC-Cc-eEEEEecC
Confidence            4678999995 555421 0357899999 998754555321 33 67776653

>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen

Probab=96.81  E-value=0.12  Score=46.08  Aligned_cols=149  Identities=13%  Similarity=0.176  Sum_probs=94.6

Q ss_pred             EeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEE-eeeeeeCCCcCccEEEEEee-EEEee-CCCCCc
Q 047411           28 NVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLV-HPITFTGPCKSSDITIMLSG-SIIAP-NGPNEW  104 (226)
Q Consensus        28 ~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~-~~l~l~~~~ks~~v~l~~~g-~l~~~-~~~~~~  104 (226)
                      .|+.|-..|+.  |    +.+||+.       ..+|.+-||.+|.+ +++.++    + ..+|...| +++.. ++...+
T Consensus        45 qvkt~~~~P~e--D----le~~I~~-------haKVaL~Pg~~Y~i~~~V~I~----~-~cYIiGnGA~V~v~~~~~~~f  106 (386)
T PF01696_consen   45 QVKTYWMEPGE--D----LEEAIRQ-------HAKVALRPGAVYVIRKPVNIR----S-CCYIIGNGATVRVNGPDRVAF  106 (386)
T ss_pred             eEEEEEcCCCc--C----HHHHHHh-------cCEEEeCCCCEEEEeeeEEec----c-eEEEECCCEEEEEeCCCCceE
Confidence            46677777764  3    7788853       34788888889998 599994    5 78887774 54431 222112


Q ss_pred             CC--CCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEE
Q 047411          105 KE--DDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTV  182 (226)
Q Consensus       105 ~~--~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~  182 (226)
                      .-  .+..|.  +.+..+|++.. =.+++.+                   .-..+.|....++.+.|+.|.+.+.-++..
T Consensus       107 ~v~~~~~~P~--V~gM~~VtF~n-i~F~~~~-------------------~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~  164 (386)
T PF01696_consen  107 RVCMQSMGPG--VVGMEGVTFVN-IRFEGRD-------------------TFSGVVFHANTNTLFHGCSFFGFHGTCLES  164 (386)
T ss_pred             EEEcCCCCCe--EeeeeeeEEEE-EEEecCC-------------------ccceeEEEecceEEEEeeEEecCcceeEEE
Confidence            21  112232  33455666655 1233322                   123678888899999999999987777655


Q ss_pred             eCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          183 MGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       183 ~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      .  ...+|+++++.+.     --||.--+-..+.|++|.|+
T Consensus       165 ~--~~~~VrGC~F~~C-----~~gi~~~~~~~lsVk~C~Fe  198 (386)
T PF01696_consen  165 W--AGGEVRGCTFYGC-----WKGIVSRGKSKLSVKKCVFE  198 (386)
T ss_pred             c--CCcEEeeeEEEEE-----EEEeecCCcceEEeeheeee
Confidence            4  5778899988763     34555555566777777664

E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=96.80  E-value=0.0062  Score=49.63  Aligned_cols=68  Identities=26%  Similarity=0.341  Sum_probs=48.7

Q ss_pred             EEE-eecCcEEEeeeEEeCC---------------CceEEEEeCeeeEEEEeEEEECCCC---CCCCCe-EEec-CeecE
Q 047411          157 LKF-DRCNNLRMNNMNFINS---------------PQTHVTVMGCIGVEFGFLSIQAPGT---SPNTDG-IHIQ-ASSNV  215 (226)
Q Consensus       157 i~~-~~~~nv~i~~i~i~ns---------------~~~~i~~~~s~~v~i~~~~i~~~~~---~~ntDG-i~~~-~s~~v  215 (226)
                      +.+ .+++||.|++++|++.               ..-.+.+..+.+|.|++|++.....   ....|| +|+. .+++|
T Consensus        39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v  118 (200)
T PF00544_consen   39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV  118 (200)
T ss_dssp             EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred             EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence            444 4899999999999992               2234888899999999999998521   112566 6775 58999


Q ss_pred             EEEeeEEec
Q 047411          216 YIHNAHISN  224 (226)
Q Consensus       216 ~I~n~~i~~  224 (226)
                      +|.+|.|..
T Consensus       119 TiS~n~f~~  127 (200)
T PF00544_consen  119 TISNNIFDN  127 (200)
T ss_dssp             EEES-EEEE
T ss_pred             EEEchhccc
Confidence            999999975

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>PLN02201 probable pectinesterase/pectinesterase inhibitor

Probab=96.79  E-value=0.054  Score=50.28  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             CCCcchHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           37 DGNADDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        37 dg~~ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      ||. -|-..||+||+ +++.. .+.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       213 dGs-G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g  264 (520)
T PLN02201        213 DGT-GNFTTIMDAVL-AAPDYSTKRYVIYIKKG-VYLEN-VEIKKK-KW-NIMMVGDG  264 (520)
T ss_pred             CCC-CCccCHHHHHH-hchhcCCCcEEEEEeCc-eeEEE-EEecCC-Cc-eEEEEecC
Confidence            443 35778999995 55542 10457999999 99743 334211 33 67776653

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=96.78  E-value=0.011  Score=44.85  Aligned_cols=66  Identities=24%  Similarity=0.248  Sum_probs=48.8

Q ss_pred             ceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecC-eecEEEEeeEEec
Q 047411          154 PTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQA-SSNVYIHNAHISN  224 (226)
Q Consensus       154 p~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~-s~~v~I~n~~i~~  224 (226)
                      ...+.+....++.|+++++.+.. .++.+..+.+++|+++++...    ...||.+.. +++++|++|+|..
T Consensus        45 ~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~~----~~~gi~~~~~~~~~~i~~n~~~~  111 (158)
T PF13229_consen   45 GYGIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIENN----GDYGIYISNSSSNVTIENNTIHN  111 (158)
T ss_dssp             TTSEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEECS----SS-SCE-TCEECS-EEES-EEEC
T ss_pred             CcEEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEcC----CCccEEEeccCCCEEEEeEEEEe
Confidence            34688888899999999999997 788889999999999999984    334999987 8999999999975

>PLN02713 Probable pectinesterase/pectinesterase inhibitor

Probab=96.78  E-value=0.038  Score=51.89  Aligned_cols=47  Identities=9%  Similarity=0.125  Sum_probs=28.7

Q ss_pred             chHHHHHHHHHHhcccC-----CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSAT-----AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~-----g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -+-.-||+||+ +++..     + .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       260 G~f~TIq~Av~-a~p~~~~~~~~-~~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g  311 (566)
T PLN02713        260 GNFTTINDAVA-AAPNNTDGSNG-YFVIYVTAG-VYEEY-VSIPKN-KK-YLMMIGDG  311 (566)
T ss_pred             CCCCCHHHHHH-hhhcccCCCCc-eEEEEEcCc-EEEEE-EEecCC-Cc-eEEEEecC
Confidence            34678999995 55442     1 247999999 99753 333211 33 66666553

>PLN02995 Probable pectinesterase/pectinesterase inhibitor

Probab=96.77  E-value=0.048  Score=50.93  Aligned_cols=47  Identities=13%  Similarity=0.186  Sum_probs=30.0

Q ss_pred             chHHHHHHHHHHhccc----CCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSA----TAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~----~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -|-.-||+||+ +++.    .+ .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       233 G~f~TIq~Ai~-a~p~~~~~~~-r~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g  283 (539)
T PLN02995        233 GHFNTVQAAID-VAGRRKVTSG-RFVIYVKRG-IYQEN-INVRLN-ND-DIMLVGDG  283 (539)
T ss_pred             CCccCHHHHHH-hcccccCCCc-eEEEEEeCC-EeEEE-EEecCC-CC-cEEEEEcC
Confidence            35778999995 4542    22 457999999 99864 333211 44 77776654

>PLN02197 pectinesterase

Probab=96.62  E-value=0.081  Score=49.86  Aligned_cols=48  Identities=17%  Similarity=0.238  Sum_probs=28.9

Q ss_pred             chHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -|-.-||+||+ +++...+ .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       285 G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-ni~l~G~g  333 (588)
T PLN02197        285 GQFKTISQAVM-ACPDKNPGRCIIHIKAG-IYNEQ-VTIPKK-KN-NIFMFGDG  333 (588)
T ss_pred             CCcCCHHHHHH-hccccCCceEEEEEeCc-eEEEE-EEccCC-Cc-eEEEEEcC
Confidence            34678999995 5544210 346899999 99753 333211 33 67776553

>PLN02916 pectinesterase family protein

Probab=96.58  E-value=0.091  Score=48.53  Aligned_cols=47  Identities=11%  Similarity=0.156  Sum_probs=29.3

Q ss_pred             chHHHHHHHHHHhccc-----CCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSA-----TAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~-----~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -|-.-||+||+ +++.     .. .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       197 G~f~TIq~AI~-a~P~~~~~~~~-r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g  248 (502)
T PLN02916        197 GTHRTINQALA-ALSRMGKSRTN-RVIIYVKAG-VYNEK-VEIDRH-MK-NVMFVGDG  248 (502)
T ss_pred             CCccCHHHHHH-hcccccCCCCc-eEEEEEeCc-eeeEE-EEecCC-Cc-eEEEEecC
Confidence            34668999995 4542     12 347999999 99853 333211 33 67776654

>PLN02745 Putative pectinesterase/pectinesterase inhibitor

Probab=96.52  E-value=0.093  Score=49.60  Aligned_cols=47  Identities=13%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           42 DSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      +-..||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       296 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g  343 (596)
T PLN02745        296 NFTTISDALA-AMPAKYEGRYVIYVKQG-IYDET-VTVDKK-MV-NVTMYGDG  343 (596)
T ss_pred             CcccHHHHHH-hccccCCceEEEEEeCC-eeEEE-EEEcCC-Cc-eEEEEecC
Confidence            4678999995 555421 0357899999 99854 334211 33 67776553

>smart00656 Amb_all Amb_all domain

Probab=96.48  E-value=0.016  Score=46.91  Aligned_cols=48  Identities=29%  Similarity=0.404  Sum_probs=40.7

Q ss_pred             eEEEEeCeeeEEEEeEEEECCCC--CCCCCeEEecCeecEEEEeeEEecC
Q 047411          178 THVTVMGCIGVEFGFLSIQAPGT--SPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       178 ~~i~~~~s~~v~i~~~~i~~~~~--~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      .++.+..++||.|+|++|+.+..  ..+.|+|.+..+++|+|++|.+..+
T Consensus        32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~   81 (190)
T smart00656       32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGC   81 (190)
T ss_pred             eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcc
Confidence            46667778999999999998643  2478999999999999999999865

>PLN02990 Probable pectinesterase/pectinesterase inhibitor

Probab=96.38  E-value=0.12  Score=48.61  Aligned_cols=48  Identities=17%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -+-.-||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       269 G~f~TIq~Av~-a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~-k~-~i~l~G~g  317 (572)
T PLN02990        269 GQYKTINEALN-AVPKANQKPFVIYIKQG-VYNEK-VDVTKK-MT-HVTFIGDG  317 (572)
T ss_pred             CCCcCHHHHHh-hCcccCCceEEEEEeCc-eeEEE-EEecCC-CC-cEEEEecC
Confidence            34667999995 555421 0347999999 99853 333211 34 77776654

>PLN02488 probable pectinesterase/pectinesterase inhibitor

Probab=96.38  E-value=0.16  Score=46.83  Aligned_cols=48  Identities=15%  Similarity=0.187  Sum_probs=30.4

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -+-.-||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|..+|
T Consensus       207 G~f~TIq~AI~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-nItliGdg  255 (509)
T PLN02488        207 GKYNTVNAAIA-AAPEHSRKRFVIYIKTG-VYDEI-VRIGST-KP-NLTLIGDG  255 (509)
T ss_pred             CCccCHHHHHH-hchhcCCCcEEEEEeCC-eeEEE-EEecCC-Cc-cEEEEecC
Confidence            45678999995 554421 0457999999 99853 333211 34 78877664

>PLN02432 putative pectinesterase

Probab=96.33  E-value=0.61  Score=40.29  Aligned_cols=47  Identities=13%  Similarity=0.112  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           42 DSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      |-.-||+||+ +++... +..+|+|.+| +|.-. +.++.. |. +++|+.++
T Consensus        22 ~f~TIq~Aid-a~p~~~~~~~~I~I~~G-~Y~E~-V~ip~~-k~-~itl~G~~   69 (293)
T PLN02432         22 DFRKIQDAID-AVPSNNSQLVFIWVKPG-IYREK-VVVPAD-KP-FITLSGTQ   69 (293)
T ss_pred             CccCHHHHHh-hccccCCceEEEEEeCc-eeEEE-EEEecc-Cc-eEEEEEcC
Confidence            4778999995 555421 0357899999 99643 334211 45 88888763

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=96.29  E-value=0.012  Score=49.34  Aligned_cols=13  Identities=15%  Similarity=0.411  Sum_probs=7.5

Q ss_pred             cceEEEeCccceEEEe
Q 047411          110 SKWFDIQSVDSLQIDG  125 (226)
Q Consensus       110 ~~~i~~~~~~nv~I~G  125 (226)
                      +||++.   +++.|+.
T Consensus        52 YP~Wh~---~~~~i~~   64 (277)
T PF12541_consen   52 YPLWHS---DNIKIEN   64 (277)
T ss_pred             CceEEE---CCeEEEe
Confidence            566664   3566655

Proteins in this family are typically between 281 and 297 amino acids in length.

>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional

Probab=96.28  E-value=0.13  Score=43.98  Aligned_cols=162  Identities=17%  Similarity=0.221  Sum_probs=84.2

Q ss_pred             cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEE--E-eeeeeeCCCcCccEEEEEeeEEEee
Q 047411           22 INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFL--V-HPITFTGPCKSSDITIMLSGSIIAP   98 (226)
Q Consensus        22 ~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~--~-~~l~l~~~~ks~~v~l~~~g~l~~~   98 (226)
                      ....++++.||-.     .|=-++|.+|+.+       +.+|++|+| --.  + .++.++    . +-+|++.|.|+..
T Consensus        30 ~~~~~vni~dy~~-----~dwiasfkqaf~e-------~qtvvvpag-l~cenint~ifip----~-gktl~v~g~l~gn   91 (464)
T PRK10123         30 PARQSVNINDYNP-----HDWIASFKQAFSE-------GQTVVVPAG-LVCDNINTGIFIP----P-GKTLHILGSLRGN   91 (464)
T ss_pred             CCCceeehhhcCc-----ccHHHHHHHHhcc-------CcEEEecCc-cEecccccceEeC----C-CCeEEEEEEeecC
Confidence            3577899999954     4556788888842       679999999 322  2 256663    4 6777777766531


Q ss_pred             CCCCCcC--------CCCCc----ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEE
Q 047411           99 NGPNEWK--------EDDKS----KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLR  166 (226)
Q Consensus        99 ~~~~~~~--------~~~~~----~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~  166 (226)
                      .. ..|.        ++..+    .-+-+.| ++++|.|   |...|----.      ..+-+ ...|+.     -+|++
T Consensus        92 gr-grfvlqdg~qv~ge~~g~~hnitldvrg-sdc~ikg---iamsgfgpvt------qiyig-gk~prv-----mrnl~  154 (464)
T PRK10123         92 GR-GRFVLQDGSQVTGEEGGSMHNITLDVRG-SDCTIKG---LAMSGFGPVT------QIYIG-GKNKRV-----MRNLT  154 (464)
T ss_pred             Cc-eeEEEecCCEeecCCCceeeeEEEeecc-CceEEee---eeecccCcee------EEEEc-CCCchh-----hhccE
Confidence            11 1111        01111    1122232 4555555   2222200000      00000 233332     25788


Q ss_pred             EeeeEEeCCCceEEE----EeCeeeEEEEeEEEECCCCCCCCCeEEec---CeecEEEEeeEEe
Q 047411          167 MNNMNFINSPQTHVT----VMGCIGVEFGFLSIQAPGTSPNTDGIHIQ---ASSNVYIHNAHIS  223 (226)
Q Consensus       167 i~~i~i~ns~~~~i~----~~~s~~v~i~~~~i~~~~~~~ntDGi~~~---~s~~v~I~n~~i~  223 (226)
                      |+++++..+.+ .+.    -...++.+|.++++..    --.|.|...   .-+++.|.+-.|+
T Consensus       155 id~itv~~any-ailrqgfhnq~dgaritn~rfs~----lqgdaiewnvaindr~ilisdhvie  213 (464)
T PRK10123        155 IDNLTVSHANY-AILRQGFHNQIIGANITNCKFSD----LQGDAIEWNVAINDRDILISDHVIE  213 (464)
T ss_pred             EccEEEeeccH-HHHhhhhhhccccceeecccccc----ccCceEEEEEEecccceeeehhehe
Confidence            88888887732 211    1234466677777665    345776542   3467777665544

>PLN02314 pectinesterase

Probab=96.28  E-value=0.13  Score=48.49  Aligned_cols=47  Identities=17%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           42 DSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      +-.-||+||+ +++...+ .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       289 ~f~TI~~Av~-a~p~~~~~r~vI~ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g  336 (586)
T PLN02314        289 DVKTINEAVA-SIPKKSKSRFVIYVKEG-TYVEN-VLLDKS-KW-NVMIYGDG  336 (586)
T ss_pred             CccCHHHHHh-hccccCCceEEEEEcCc-eEEEE-EEecCC-Cc-eEEEEecC
Confidence            4667999995 5554210 347999999 99753 333211 33 67776653

>PLN02313 Pectinesterase/pectinesterase inhibitor

Probab=96.17  E-value=0.11  Score=49.17  Aligned_cols=48  Identities=19%  Similarity=0.237  Sum_probs=29.1

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      -|-..||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|..+|
T Consensus       285 G~f~TI~~Av~-a~p~~~~~r~vI~ik~G-vY~E~-V~i~~~-k~-ni~l~Gdg  333 (587)
T PLN02313        285 GDFTTVAAAVA-AAPEKSNKRFVIHIKAG-VYREN-VEVTKK-KK-NIMFLGDG  333 (587)
T ss_pred             CCCccHHHHHH-hccccCCceEEEEEeCc-eeEEE-EEeCCC-CC-eEEEEecC
Confidence            35678999995 555421 0348999999 99753 233211 33 66666553

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=96.01  E-value=0.023  Score=47.81  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=19.5

Q ss_pred             EEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEE
Q 047411          181 TVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHI  222 (226)
Q Consensus       181 ~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i  222 (226)
                      .+++|+||+|+|.++.+-      |.|  |.|+||+|.|++|
T Consensus       151 ~Fq~~kNvei~ns~l~sK------DAF--Wn~eNVtVyDS~i  184 (277)
T PF12541_consen  151 SFQYCKNVEIHNSKLDSK------DAF--WNCENVTVYDSVI  184 (277)
T ss_pred             EeeceeeEEEEccEEecc------ccc--ccCCceEEEcceE
Confidence            356777777777777763      222  4445555555444

Proteins in this family are typically between 281 and 297 amino acids in length.

>PLN02217 probable pectinesterase/pectinesterase inhibitor

Probab=95.97  E-value=0.23  Score=47.44  Aligned_cols=47  Identities=9%  Similarity=0.087  Sum_probs=28.4

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS   92 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~   92 (226)
                      -+-.-||+||+ +++... +.-+|+|-+| +|.-. +.+... |. +++|+.+
T Consensus       260 G~f~TIq~Av~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~Gd  307 (670)
T PLN02217        260 GQYKTINEALN-FVPKKKNTTFVVHIKAG-IYKEY-VQVNRS-MT-HLVFIGD  307 (670)
T ss_pred             CCccCHHHHHH-hccccCCceEEEEEeCC-ceEEE-EEEcCC-CC-cEEEEec
Confidence            35778999995 555421 0347999999 99753 333211 23 5666554

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=95.95  E-value=0.047  Score=44.48  Aligned_cols=60  Identities=28%  Similarity=0.417  Sum_probs=42.1

Q ss_pred             CcEEEeee----EEeCCCceEEEEe-CeeeEEEEeEEEECC-----------CCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          163 NNLRMNNM----NFINSPQTHVTVM-GCIGVEFGFLSIQAP-----------GTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       163 ~nv~i~~i----~i~ns~~~~i~~~-~s~~v~i~~~~i~~~-----------~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      +|-+|.|.    ++.+   +++.+. .++||.|+|++|+..           ......|+|.+..+++|+|++|.+..+
T Consensus        21 snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~   96 (200)
T PF00544_consen   21 SNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWG   96 (200)
T ss_dssp             SSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEET
T ss_pred             CCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEecc
Confidence            55566662    3444   356665 899999999999982           123678999999999999999999865

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>PLN02301 pectinesterase/pectinesterase inhibitor

Probab=95.92  E-value=0.89  Score=42.68  Aligned_cols=47  Identities=15%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           42 DSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      |-..||+||+ +++...+ .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus       247 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g  294 (548)
T PLN02301        247 KYKTVKEAVA-SAPDNSKTRYVIYVKKG-TYKEN-VEIGKK-KK-NLMLVGDG  294 (548)
T ss_pred             CcccHHHHHH-hhhhcCCceEEEEEeCc-eeeEE-EEecCC-Cc-eEEEEecC
Confidence            4778999995 5554220 347999999 99753 334311 44 88888775

>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies)

Probab=95.67  E-value=0.017  Score=34.93  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=24.3

Q ss_pred             EEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       180 i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      +.+..+.+.+|++.++..     +.|||++..|++-+|+++.+.
T Consensus         2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~   40 (44)
T TIGR03804         2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS   40 (44)
T ss_pred             EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence            445556666666666664     455666666666666666654

This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.

>PLN02468 putative pectinesterase/pectinesterase inhibitor

Probab=95.35  E-value=1.7  Score=40.98  Aligned_cols=46  Identities=11%  Similarity=0.229  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHhcccC--CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           42 DSMAFIKAWNNTCSAT--AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~--g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      +-.-||+||+ +++..  + .-+|+|.+| +|.- .+.++.. |. +++|..+|
T Consensus       269 ~f~tI~~Av~-a~p~~~~~-~~vI~ik~G-vY~E-~V~i~~~-k~-~i~~~G~g  316 (565)
T PLN02468        269 KYKTISEALK-DVPEKSEK-RTIIYVKKG-VYFE-NVRVEKK-KW-NVVMVGDG  316 (565)
T ss_pred             CccCHHHHHH-hchhcCCC-cEEEEEeCC-ceEE-EEEecCC-CC-eEEEEecC
Confidence            4678999995 55442  2 458999999 9985 3344311 34 88888875

>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3

Probab=94.12  E-value=0.55  Score=43.49  Aligned_cols=134  Identities=13%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCC------CCcCCC----C-C----cce--EEEeCccceE
Q 047411           60 SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGP------NEWKED----D-K----SKW--FDIQSVDSLQ  122 (226)
Q Consensus        60 g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~------~~~~~~----~-~----~~~--i~~~~~~nv~  122 (226)
                      ...|||-|| -|.-|.+....- ++ ++.+...|+|....-.      ..|...    + .    +-+  +...+..++.
T Consensus       256 ~~~VYlApG-AyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~  332 (582)
T PF03718_consen  256 TKWVYLAPG-AYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLT  332 (582)
T ss_dssp             --EEEE-TT-EEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEE
T ss_pred             ccEEEEcCC-cEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEE
Confidence            468999999 998888876522 34 7777777898753211      112100    0 0    111  1223344566


Q ss_pred             EEeceEEeCCCcccccccccccccCCcccCCceEEEEeecC----cEEEeeeEEeCCCceEEE-EeCeeeEEEEeEEEEC
Q 047411          123 IDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCN----NLRMNNMNFINSPQTHVT-VMGCIGVEFGFLSIQA  197 (226)
Q Consensus       123 I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~----nv~i~~i~i~ns~~~~i~-~~~s~~v~i~~~~i~~  197 (226)
                      +.|- ||.  -..+|                  .+.+.+-.    .+.|++.+...+=.|.-. +.-+.+-+|+||.+++
T Consensus       333 ~~Gi-TI~--~pP~~------------------Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~  391 (582)
T PF03718_consen  333 CEGI-TIN--DPPFH------------------SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV  391 (582)
T ss_dssp             EES--EEE----SS-------------------SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE
T ss_pred             EEee-Eec--CCCcc------------------eEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe
Confidence            6552 221  01111                  24444333    478888888875333221 2234566778888886


Q ss_pred             CCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          198 PGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       198 ~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                           |.|+|.+.. +++.|+||.+-
T Consensus       392 -----nDD~iKlYh-S~v~v~~~ViW  411 (582)
T PF03718_consen  392 -----NDDAIKLYH-SNVSVSNTVIW  411 (582)
T ss_dssp             -----SS-SEE--S-TTEEEEEEEEE
T ss_pred             -----cCchhheee-cCcceeeeEEE
Confidence                 778887777 58888888764

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.

>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]

Probab=93.96  E-value=1.4  Score=38.42  Aligned_cols=47  Identities=11%  Similarity=0.100  Sum_probs=27.4

Q ss_pred             chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcC-ccEEEEEe
Q 047411           41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKS-SDITIMLS   92 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks-~~v~l~~~   92 (226)
                      ++-..||+|+++|....+ |...|.+-+| .|.- .+.++   ++ -.++|+.+
T Consensus        92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~G-vY~e-~v~Vp---~~~~~ITLyGe  140 (405)
T COG4677          92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAG-VYQE-TVYVP---AAPGGITLYGE  140 (405)
T ss_pred             cchHHHHHHHhhhcccCCCceEEEEEccc-eece-eEEec---CCCCceeEEec
Confidence            667789999965444321 0234667899 8863 33333   22 03777765

>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies)

Probab=92.94  E-value=0.25  Score=29.66  Aligned_cols=40  Identities=8%  Similarity=0.066  Sum_probs=36.9

Q ss_pred             EEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEEC
Q 047411          157 LKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA  197 (226)
Q Consensus       157 i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~  197 (226)
                      |.+..+.+.+|++-++.+... ++++..+.+.++++.++..
T Consensus         2 I~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~   41 (44)
T TIGR03804         2 IYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASS   41 (44)
T ss_pred             EEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEc
Confidence            678889999999999999988 9999999999999998876

This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.

>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional

Probab=89.45  E-value=4.7  Score=34.80  Aligned_cols=71  Identities=18%  Similarity=0.281  Sum_probs=51.3

Q ss_pred             CCceEEEEeecCcEEEeeeEEeCCCceEEE--------EeCeeeEEEEeEEEECCCCCCCCCeEEecC---eecEEEEee
Q 047411          152 LAPTVLKFDRCNNLRMNNMNFINSPQTHVT--------VMGCIGVEFGFLSIQAPGTSPNTDGIHIQA---SSNVYIHNA  220 (226)
Q Consensus       152 ~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~--------~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~---s~~v~I~n~  220 (226)
                      .....+.++.|+|+.|+++.+.||...-+-        +.--+|..+.+++..+..-...--||.+.+   .+-|-|.|.
T Consensus       290 idnatvaiygcdnfvidni~mvnsagmligygvikg~ylsipqnfkln~i~ldn~~l~yklrgiqissgnatsfvaitn~  369 (464)
T PRK10123        290 IDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNI  369 (464)
T ss_pred             CCcceEEEEcccceEEeccccccccccEEEeeeeeccEecccccceeceEeecccccceeeeeeEeccCCcceEEEEeee
Confidence            444678999999999999999999764321        223457788888888866556778888865   455667666


Q ss_pred             EE
Q 047411          221 HI  222 (226)
Q Consensus       221 ~i  222 (226)
                      .+
T Consensus       370 ~m  371 (464)
T PRK10123        370 EM  371 (464)
T ss_pred             eh
Confidence            54

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=89.32  E-value=4.2  Score=32.64  Aligned_cols=34  Identities=9%  Similarity=0.173  Sum_probs=26.4

Q ss_pred             EEEeeeEEeCCCc------eEEEEeCeeeEEEEeEEEECC
Q 047411          165 LRMNNMNFINSPQ------THVTVMGCIGVEFGFLSIQAP  198 (226)
Q Consensus       165 v~i~~i~i~ns~~------~~i~~~~s~~v~i~~~~i~~~  198 (226)
                      +.|+|++|.....      -++.+..++++.|+++++.+.
T Consensus        94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~  133 (225)
T PF12708_consen   94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS  133 (225)
T ss_dssp             EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-
T ss_pred             EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc
Confidence            3488888876542      458888999999999999974

...

>PLN02432 putative pectinesterase

Probab=83.24  E-value=22  Score=30.72  Aligned_cols=44  Identities=11%  Similarity=-0.054  Sum_probs=31.6

Q ss_pred             EEEEeecCcEEEeeeEEeCCCc---eEE-EEeCeeeEEEEeEEEECCCC
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQ---THV-TVMGCIGVEFGFLSIQAPGT  200 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~---~~i-~~~~s~~v~i~~~~i~~~~~  200 (226)
                      .+.+ ..+++..+||+|+|+..   -.+ .....+...+.+|++....+
T Consensus        88 T~~v-~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QD  135 (293)
T PLN02432         88 TLSV-LASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQD  135 (293)
T ss_pred             EEEE-ECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccc
Confidence            3444 47999999999999832   122 23457889999999998654

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=82.55  E-value=4.3  Score=34.18  Aligned_cols=54  Identities=13%  Similarity=0.176  Sum_probs=42.5

Q ss_pred             eEEEEeecCcEEEeeeEEeCC---CceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCee
Q 047411          155 TVLKFDRCNNLRMNNMNFINS---PQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASS  213 (226)
Q Consensus       155 ~~i~~~~~~nv~i~~i~i~ns---~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~  213 (226)
                      ..+.+....+.+|+++++.|+   ...++.+..+ +.+|+|+++...    ..+||.+....
T Consensus        89 qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~----~~~GI~v~g~~  145 (246)
T PF07602_consen   89 QNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN----GREGIFVTGTS  145 (246)
T ss_pred             eeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC----ccccEEEEeee
Confidence            456777789999999999999   3456777766 999999999984    46888776653

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>PF15240 Pro-rich: Proline-rich

Probab=82.45  E-value=0.88  Score=36.22  Aligned_cols=25  Identities=12%  Similarity=0.240  Sum_probs=18.7

Q ss_pred             hhHHHHHHHHHhhhhcccccceEEe
Q 047411            5 LCAILYFLYLISTASIRINADEFNV   29 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~v   29 (226)
                      ||+|||+|+||.|.|+-.....++-
T Consensus         1 MLlVLLSvALLALSSAQ~~dEdv~~   25 (179)
T PF15240_consen    1 MLLVLLSVALLALSSAQSTDEDVSQ   25 (179)
T ss_pred             ChhHHHHHHHHHhhhcccccccccc
Confidence            7899999999999887655544443

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=81.14  E-value=8.2  Score=34.05  Aligned_cols=60  Identities=13%  Similarity=0.044  Sum_probs=41.2

Q ss_pred             EEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeE
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAH  221 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~  221 (226)
                      .+..+.++.-.+++-.++.. .+++|.+.+.+..+++.....     |.-|.-++.|++++|.|+.
T Consensus       174 gIy~~~S~~~~~~gnr~~~~-RygvHyM~t~~s~i~dn~s~~-----N~vG~ALMys~~l~V~~nr  233 (408)
T COG3420         174 GIYSDTSQHNVFKGNRFRDL-RYGVHYMYTNDSRISDNSSRD-----NRVGYALMYSDRLKVSDNR  233 (408)
T ss_pred             eEEEcccccceecccchhhe-eeeEEEEeccCcEeecccccC-----CcceEEEEEeccEEEEcCc
Confidence            45555556666666666666 567777777777777665543     6778888888888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
1bhe_A	376	Polygalacturonase From Erwinia Carotovora Ssp. Caro		3e-04

>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 123 IDGSGTIDGRGK--------AWWDISCKINKKEGCVKLAPTVLKFDRCXXXXXXXXXXXX 174
           I G GTIDG+G         +WW+++     K+   +  P +++ ++             
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKK-LKQNTPRLIQINKSKNFTLYNVSLIN 171
Query: 175 SPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           SP  HV      G      +I+ P T+ NTDGI   +S N+ I  ++I+ G
Sbjct: 172 SPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	2e-52
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	1e-46
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	1e-45
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	3e-42
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	1e-37
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	1e-36
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	6e-36
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	4e-33
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	3e-32
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	3e-32
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	7e-18
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	1e-15
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	1e-15
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	2e-11
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	3e-09
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	6e-07
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422

 Score =  173 bits (440), Expect = 2e-52
 Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 23/211 (10%)

Query: 15  ISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH 74
           +++AS +      N+L +GA  D + D   A   AW   C +      + IP G   L  
Sbjct: 9   LTSASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSGG---LVYIPSGNYALNT 64

Query: 75  PITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGK 134
            +T TG        I L G I      +           D    +       G + G G 
Sbjct: 65  WVTLTGGSA---TAIQLDGIIYRTGTASGNM----IAVTDTTDFELFSSTSKGAVQGFGY 117

Query: 135 AWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLS 194
            +                   +L+     +  ++++  +++P  H T+  C   E   ++
Sbjct: 118 VYHAEGTY----------GARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMA 167

Query: 195 IQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           I+        DGI +   SN+++H+  ++N 
Sbjct: 168 IRGG-NEGGLDGIDVW-GSNIWVHDVEVTNK 196

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376

 Score =  157 bits (399), Expect = 1e-46
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 34/217 (15%)

Query: 33  GAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKT--FLVHPITFTGPCKSSDITIM 90
                 ++  +    KA N       +   + +  G T  FL  P++       S ++++
Sbjct: 16  TTLKADSSTATSTIQKALN----NCDQGKAVRLSAGSTSVFLSGPLSLP-----SGVSLL 66

Query: 91  LSGS--IIAPNGPNEWKEDDK------------SKWFDIQSVDSLQIDGSGTIDGRGKA- 135
           +     + A N    ++                  +    S  +  I G GTIDG+G   
Sbjct: 67  IDKGVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVK 126

Query: 136 -------WWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGV 188
                  WW+++     K+   +  P +++ ++  N  + N++ INSP  HV      G 
Sbjct: 127 LQDKKVSWWELAADAKVKKLK-QNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGF 185

Query: 189 EFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
                +I+ P T+ NTDGI   +S N+ I  ++I+ G
Sbjct: 186 TAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATG 222

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362

 Score =  154 bits (390), Expect = 1e-45
 Identities = 37/205 (18%), Positives = 60/205 (29%), Gaps = 28/205 (13%)

Query: 27  FNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSD 86
           F       A D     + A  KA    CS    +  + +P G T        TG      
Sbjct: 18  FASASPIEARDSCTFTTAAAAKAGKAKCSTITLN-NIEVPAGTTL-----DLTGLTSG-- 69

Query: 87  ITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGS--GTIDGRGKAWWDISCKIN 144
             ++  G+                      S + + + G+    I+  G  WWD      
Sbjct: 70  TKVIFEGTTTFQYEEWAG-------PLISMSGEHITVTGASGHLINCDGARWWDGKGTSG 122

Query: 145 KKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTS--- 201
           KK       P        ++  +  +N  N+P    +V     + F  ++I         
Sbjct: 123 KK------KPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDITFTDVTINNADGDTQG 175

Query: 202 -PNTDGIHIQASSNVYIHNAHISNG 225
             NTD   +  S  V I    + N 
Sbjct: 176 GHNTDAFDVGNSVGVNIIKPWVHNQ 200

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448

 Score =  147 bits (373), Expect = 3e-42
 Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 53/247 (21%)

Query: 22  INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGP 81
           I   E N+LDFGA GDG  D S +F +A             +++P+G  FL  PI     
Sbjct: 23  IPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGG--GRLIVPEG-VFLTGPIHLK-- 77

Query: 82  CKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQS-----------VDSLQIDGSGTID 130
              S+I + + G+I     P  +     +++  I+             +++ I GSG +D
Sbjct: 78  ---SNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLD 134

Query: 131 GRGKA--WWDISCKINKKEGCVKLA------------------------------PTVLK 158
           G      WW    K +                                       P+ ++
Sbjct: 135 GSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQ 194

Query: 159 FDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIH 218
           F RC N+ +  +  INSP   +  +    V    + I +    PN DGI  ++   + I 
Sbjct: 195 FYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIE 252

Query: 219 NAHISNG 225
                 G
Sbjct: 253 KCRFDTG 259

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339

 Score =  132 bits (335), Expect = 1e-37
 Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 39  NADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAP 98
           +  +  +       +CS    S  + +P G T               D+T +  G+ +  
Sbjct: 7   SGSNGASSASKSKTSCSTIVLS-NVAVPSGTTL--------------DLTKLNDGTHVIF 51

Query: 99  NGPNEWKEDDKSKWFDIQSVDSLQIDGSG--TIDGRGKAWWDISCKINKKEGCVKLAPTV 156
           +G   +   + S      S   L I G+   +I+G G  WWD       K       P  
Sbjct: 52  SGETTFGYKEWSGPLISVSGSDLTITGASGHSINGDGSRWWDGEGGNGGK-----TKPKF 106

Query: 157 LKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSP----NTDGIHIQAS 212
                  N  ++ +  +NSP    +V G   +    ++I           NTD   I  S
Sbjct: 107 FAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTS 166

Query: 213 SNVYIHNAHISNG 225
           + V I  A + N 
Sbjct: 167 TYVTISGATVYNQ 179

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339

 Score =  130 bits (328), Expect = 1e-36
 Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 25/190 (13%)

Query: 41  DDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNG 100
            D+ A IK    +C++   +  +V+P G T  +         KS   T+   G       
Sbjct: 6   TDAAAAIKGKA-SCTSIILN-GIVVPAGTTLDMTG------LKSG-TTVTFQGKTTFGYK 56

Query: 101 PNEWKEDDKSKWFDIQSVD-SLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKF 159
             E               + ++      +ID +G  WWD       K       P     
Sbjct: 57  EWEGP------LISFSGTNININGASGHSIDCQGSRWWDSKGSNGGK-----TKPKFFYA 105

Query: 160 DRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSP----NTDGIHIQASSNV 215
               +  +  +N +N+P    ++     +    + I           NTD   + +S+ V
Sbjct: 106 HSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGV 165

Query: 216 YIHNAHISNG 225
           YI  A++ N 
Sbjct: 166 YISGANVKNQ 175

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608

 Score =  132 bits (333), Expect = 6e-36
 Identities = 44/266 (16%), Positives = 77/266 (28%), Gaps = 68/266 (25%)

Query: 17  TASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPI 76
           TA         NV DFGA  DG   ++ A  +A  ++C        + IP G T+    +
Sbjct: 147 TAKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQAI-DSCKPGC---RVEIPAG-TYKSGAL 201

Query: 77  TFTGPCKSSDITIMLS--GSIIAPNGPNEWKEDDKS------------------KWFDIQ 116
                   SD+T+ L     ++    P+++    +                         
Sbjct: 202 WLK-----SDMTLNLQAGAILLGSENPDDYPAGYRLYPYSTIERPASLINAIDPNNSKPG 256

Query: 117 SVDSLQIDGSGTIDGRGKAWWDISCKINK------------------------------- 145
           +  +++I GSG IDG G      +   ++                               
Sbjct: 257 TFRNIRITGSGVIDGNGWLRAKTAEITDELGRSLPQYVASKNSKVHEDGILAKNQVEKAV 316

Query: 146 ------KEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPG 199
                 K    +   +++      N+ +      N     +  +    V    L      
Sbjct: 317 SDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIH-QTY 375

Query: 200 TSPNTDGIHIQASSNVYIHNAHISNG 225
            + N DGI    S NV + N     G
Sbjct: 376 DANNGDGIEFGNSQNVMVFNNFFDTG 401

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336

 Score =  120 bits (304), Expect = 4e-33
 Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 25/189 (13%)

Query: 42  DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGP 101
            S +      ++CS    S ++ +P G+T        +     S  TI   G+       
Sbjct: 6   TSASEASESISSCSDVVLS-SIEVPAGETL-----DLSDAADGS--TITFEGTTSFGYKE 57

Query: 102 NEWKEDDKSKWFDIQSVD-SLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFD 160
            +               D ++ +     IDG G  WWD       K       P  +   
Sbjct: 58  WK------GPLIRFGGKDLTVTMADGAVIDGDGSRWWDSKGTNGGK-----TKPKFMYIH 106

Query: 161 RCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSP----NTDGIHIQASSNVY 216
              +     +N  N+P   ++V     V     +I           NTDG  I  S+ VY
Sbjct: 107 DVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVY 165

Query: 217 IHNAHISNG 225
           I  A + N 
Sbjct: 166 ISGATVKNQ 174

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335

 Score =  118 bits (298), Expect = 3e-32
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 29/188 (15%)

Query: 45  AFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEW 104
           +   A +    +        +P G T +++P            T+ ++G I       + 
Sbjct: 7   SVDDAKDIAGCSAVTLNGFTVPAGNTLVLNPD--------KGATVTMAGDITFAKTTLDG 58

Query: 105 KEDDKSKWFDIQSVDSLQIDGSGT-IDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCN 163
                   F I     +   G+    DG G  +WD     N         P      + +
Sbjct: 59  P------LFTI-DGTGINFVGADHIFDGNGALYWDGKGTNNGT-----HKPHPFLKIKGS 106

Query: 164 NLRMNNMNFINSPQTHVTVMGCI------GVEFGFLSIQAPGTSPNTDGIHIQASSNVYI 217
                    +NSP   ++V          G+     +        NTDG  +  ++NV I
Sbjct: 107 GT-YKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS-ANNVTI 164

Query: 218 HNAHISNG 225
            N  + N 
Sbjct: 165 QNCIVKNQ 172

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349

 Score =  119 bits (299), Expect = 3e-32
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 26/196 (13%)

Query: 42  DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGP 101
              + +    ++C     +    +P GK   +  +         D T+   G+       
Sbjct: 6   TEYSGLATAVSSCKNIVLN-GFQVPTGKQLDLSSLQN-------DSTVTFKGTTTFATTA 57

Query: 102 NEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDR 161
           +       +      S  ++       IDG G+A+WD     +      K    ++    
Sbjct: 58  DNDF----NPIVISGSNITITGASGHVIDGNGQAYWDGKGSNSNSNQ--KPDHFIVVQKT 111

Query: 162 CNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA------------PGTSPNTDGIHI 209
             N ++ N+N  N P     + G   +    L +                 + NTDG  I
Sbjct: 112 TGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDI 171

Query: 210 QASSNVYIHNAHISNG 225
            +S +V + N H+ N 
Sbjct: 172 SSSDHVTLDNNHVYNQ 187

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464

 Score = 74.5 bits (182), Expect = 1e-15
 Identities = 43/212 (20%), Positives = 68/212 (32%), Gaps = 29/212 (13%)

Query: 24  ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCK 83
            +   V DFGA G+  +DDS A  +A N   S      T++IP G T+    I       
Sbjct: 20  VNYDLVDDFGANGNDTSDDSNALQRAIN-AISRKPNGGTLLIPNG-TYHFLGIQMK---- 73

Query: 84  SSDITIML-SGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCK 142
            S++ I + S  II P    + K     +      V +    G G          D    
Sbjct: 74  -SNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLG-----NGFLVDFKDS 127

Query: 143 INKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSP 202
            +K          V K     N +++N    ++     +++  +    G L     G   
Sbjct: 128 RDK-------NLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIE 180

Query: 203 N---------TDGIHIQASSNVYIHNAHISNG 225
                        I    + N+   N H   G
Sbjct: 181 RIKQNNALFGYGLIQTYGADNILFRNLHSEGG 212

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609

 Score = 74.1 bits (181), Expect = 1e-15
 Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 35/233 (15%)

Query: 10  YFLYLISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGK 69
           +F  L+      +     +V  +GA GDG  DD  AF KA  +          + +P G 
Sbjct: 6   HFADLVIQVIDELKQFGVSVKTYGAKGDGVTDDIRAFEKAIESGF-------PVYVPYGT 58

Query: 70  TFLVHPITFTGPCKSSDITIMLSG---SIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGS 126
             +   I        S+  +  +G   ++I         E            +++ +   
Sbjct: 59  FMVSRGIKL-----PSNTVLTGAGKRNAVIRFMDSVGRGESLMYNENVTTGNENIFLSS- 112

Query: 127 GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTV---- 182
            T+DG  K             G      + L    C+N+ + ++  ++     + +    
Sbjct: 113 FTLDGNNKRLGQ------GISGIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGG 166

Query: 183 ---------MGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226
                                     T    DGI    S  + I N +  +  
Sbjct: 167 LDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHHSQYINILNCYSHDPR 219

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600

 Score = 61.8 bits (149), Expect = 2e-11
 Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 40/230 (17%)

Query: 22  INADEFNVLDFGAAGDG-------NADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH 74
           +  +  ++ DF     G       N D       A +   S+     T+ IP G T+ + 
Sbjct: 36  VLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAID-YVSS-NGGGTITIPAGYTWYLG 93

Query: 75  PITFTGPCKS-------SDITIMLSGSIIAPNGPN-----EWKEDDKSKWFDIQSVDSLQ 122
                G           S++ + + G I      +      +   D        ++++  
Sbjct: 94  SYGVGGIAGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCH 153

Query: 123 IDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQT---- 178
           I G G +D  G  +   S   N            + F R  N  +  + F N   T    
Sbjct: 154 IYGHGVVDFGGYEFGASSQLRNG-----------VAFGRSYNCSVTGITFQNGDVTWAIT 202

Query: 179 ---HVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
              +     C   +  F+++     + +   +++       + + + S  
Sbjct: 203 LGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVN-CPYSGVESCYFSMS 251

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 26/233 (11%), Positives = 54/233 (23%), Gaps = 42/233 (18%)

Query: 19  SIRINADEFNVLDFGAAGDGNA------------------DDSMAFIKAWNNTCSATAKS 60
           S+  + D  ++   GA    NA                    +             T  +
Sbjct: 140 SVEFDDDLISLAPSGARQPENALLIFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSA 199

Query: 61  PTMVIPKGKTFLVHPITFTGPCKSSDITIMLS-GSIIAPNGPNEWKEDDKSKWFDIQSVD 119
            T+V   G  +            SS   +  + G+ +            K     + +  
Sbjct: 200 STVVFNPGVYYFTGHDHMVLS--SSVTWVYFAPGAYV------------KGAVEFLSTAS 245

Query: 120 SLQIDGSGTIDGRGKAWW----DISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINS 175
            ++  G G + G    W+    +   K +               +      +N +     
Sbjct: 246 EVKASGHGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAP 305

Query: 176 PQTHVTVMGCIGVEFGFLSI---QAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           P   +   G              Q       TDG+ +       + +      
Sbjct: 306 PFNSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEM--YPGTILQDVFYHTD 356

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377

 Score = 48.3 bits (114), Expect = 6e-07
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 29/223 (13%)

Query: 26  EFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGP---- 81
           ++NV DFGA GDG +DD  +   A +   +  A   T+ +P G  + V      G     
Sbjct: 2   DYNVKDFGALGDGVSDDRASIQAAIDA--AYAAGGGTVYLPAG-EYRVSAAGEPGDGCLM 58

Query: 82  -------CKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGK 134
                    +     ++     +             +      +  L +DG+        
Sbjct: 59  LKDGVYLAGAGMGETVIKLIDGSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKV 118

Query: 135 AWWDISCKINKKEGCVKL-----------APTVLKFDRCNNLRMNNMNFINSPQTHVTVM 183
             W              +                  ++  NL + +    ++        
Sbjct: 119 DGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVAD 178

Query: 184 GCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226
             +   F          + +  G ++  S++ ++   +++ G 
Sbjct: 179 YLVDSVF----ENNVAYANDRHGFNVVTSTHDFVMTNNVAYGN 217

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 34/211 (16%), Positives = 66/211 (31%), Gaps = 33/211 (15%)

Query: 23  NADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPC 82
           N +  ++LDFG   DG  D+  A   A  +  ++      + IP      V  I  +   
Sbjct: 48  NKEAISILDFGVIDDGVTDNYQAIQNAI-DAVASLPSGGELFIPAS-NQAVGYIVGSTLL 105

Query: 83  KSSDITIMLSG---SIIAPNGPNEWKEDDKSKWFDI-QSVDSLQIDGSGTIDGRGKAWWD 138
               + I   G    + A +G              I + + ++++ G+ T +G       
Sbjct: 106 IPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITA 165

Query: 139 ISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNF--INSPQTHVTVMGCIGVEFGFLSIQ 196
               I +  G              +N+ +N +    +     H   + C           
Sbjct: 166 EDSVIRQVYGW-----------VFDNVMVNEVETAYLMQGLWHSKFIACQAGT------- 207

Query: 197 APGTSPNTDGIH-IQASSNVYIHNAHISNGT 226
                    G+H +    +V + + H S G 
Sbjct: 208 ------CRVGLHFLGQCVSVSVSSCHFSRGN 232

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 32/208 (15%), Positives = 57/208 (27%), Gaps = 59/208 (28%)

Query: 25  DEFNVLDFGAAGDGNADDSMAFIKAW--NNTCSATAKSPTMVIPKGKTFLVHPITFTGPC 82
              NVL  G  G G         K W   + C +      M       F +  +     C
Sbjct: 149 PAKNVLIDGVLGSG---------KTWVALDVCLSYKVQCKM------DFKIFWLNL-KNC 192

Query: 83  KSSD-ITIMLSG--SIIAPNG-------------PNEWKEDDKSKWFDIQSVDSLQI-DG 125
            S + +  ML      I PN               +  + + +         + L +   
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 126 ---SGTIDGRGKAWWDISCKINKKEGCVKLAPTVLK--FDRCNNLRMNN--MNFINSPQT 178
              +   +      +++SCKI        L  T  K   D  +     +  ++  +   T
Sbjct: 253 VQNAKAWNA-----FNLSCKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 179 HVTVMG----CIGVEFGFLSIQAPGTSP 202
              V       +      L  +   T+P
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	100.0
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	100.0
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	100.0
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	100.0
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	100.0
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	100.0
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	100.0
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	100.0
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	100.0
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	100.0
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	100.0
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	99.97
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	99.96
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	99.96
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	99.96
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	99.94
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	99.93
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	99.92
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	99.82
2inu_A	410	Insulin fructotransferase; right-handed parallel b	99.54
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	99.33
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	98.97
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	98.68
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	98.64
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	98.61
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	98.56
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.56
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	98.53
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.51
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	98.46
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	98.41
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	98.4
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	98.37
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	98.32
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	98.28
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	98.28
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.27
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	98.2
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	98.19
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	98.19
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	98.13
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	98.0
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	97.99
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	97.88
2x3h_A	542	K5 lyase, K5A lyase; bacteriophage, glycosaminogly	97.87
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	97.78
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	97.68
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	97.65
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	97.64
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	97.62
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	97.59
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	97.57
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	97.57
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	97.55
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	97.4
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	97.34
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	97.34
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	97.26
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	97.16
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	96.98
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	96.76
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	96.69
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	96.68
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	96.18
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	96.15
3grh_A	422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	95.81
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	95.7
2inu_A	410	Insulin fructotransferase; right-handed parallel b	95.67
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	95.53
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	88.87

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=100.00  E-value=1.5e-45  Score=331.18  Aligned_cols=197  Identities=29%  Similarity=0.493  Sum_probs=172.3

Q ss_pred             cccccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeC
Q 047411           20 IRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPN   99 (226)
Q Consensus        20 ~~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~   99 (226)
                      +...+++++|++|||++||.+|||+|||+||+ +|++.| |++|+||+| +|+++++.|    || +++|+++|+|++++
T Consensus        21 p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~g-gg~v~vP~G-~yl~~~l~l----~s-~v~l~l~gtL~~s~   92 (448)
T 3jur_A           21 PQIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQG-GGRLIVPEG-VFLTGPIHL----KS-NIELHVKGTIKFIP   92 (448)
T ss_dssp             CCCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHT-CEEEEECSS-EEEESCEEC----CT-TEEEEESSEEEECC
T ss_pred             CCCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcC-CeEEEECCC-cEEEeeeEe----CC-CcEEEEEEEEEecC
Confidence            44457899999999999999999999999995 677656 889999999 999999999    68 99999999999999


Q ss_pred             CCCCc-CC----------CCCcceEEEeCccceEEEeceEEeCCC--cccccccccccc---------------------
Q 047411          100 GPNEW-KE----------DDKSKWFDIQSVDSLQIDGSGTIDGRG--KAWWDISCKINK---------------------  145 (226)
Q Consensus       100 ~~~~~-~~----------~~~~~~i~~~~~~nv~I~G~G~idG~G--~~~~~~~~~~~~---------------------  145 (226)
                      ++++| +.          .+..+||++.+++||+|+|.|+|||+|  +.||......+.                     
T Consensus        93 d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  172 (448)
T 3jur_A           93 DPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAE  172 (448)
T ss_dssp             CGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHH
T ss_pred             CHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhc
Confidence            99888 31          023479999999999999999999999  899974321000                     


Q ss_pred             ---------cCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEE
Q 047411          146 ---------KEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVY  216 (226)
Q Consensus       146 ---------~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~  216 (226)
                               ..+....||++|.|.+|+|++|+|++++|||+|++++..|+|++|++++|.++  ++|+||||+.+|+||+
T Consensus       173 ~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~  250 (448)
T 3jur_A          173 RGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYML  250 (448)
T ss_dssp             HTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEE
T ss_pred             ccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEE
Confidence                     00111479999999999999999999999999999999999999999999997  6899999999999999


Q ss_pred             EEeeEEecCC
Q 047411          217 IHNAHISNGT  226 (226)
Q Consensus       217 I~n~~i~~gD  226 (226)
                      |+||+|++||
T Consensus       251 I~n~~i~~gD  260 (448)
T 3jur_A          251 IEKCRFDTGD  260 (448)
T ss_dssp             EESCEEEESS
T ss_pred             EEeeEEEeCC
Confidence            9999999998

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=100.00  E-value=2.7e-39  Score=285.69  Aligned_cols=189  Identities=24%  Similarity=0.457  Sum_probs=161.3

Q ss_pred             cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecC---CCeEEEeeeeeeCCCcCccEEEEEee--EEE
Q 047411           22 INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPK---GKTFLVHPITFTGPCKSSDITIMLSG--SII   96 (226)
Q Consensus        22 ~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~---G~tY~~~~l~l~~~~ks~~v~l~~~g--~l~   96 (226)
                      ....+|+|.+||     .+|||+|||+|| ++|++   |++|+||+   | +|+++++.|    || +++|++++  +|+
T Consensus        10 ~~p~~~~v~~~G-----~~~dT~aiq~Ai-~ac~~---Gg~v~~~~~~~g-~yl~g~i~l----~s-~vtL~l~~Ga~L~   74 (376)
T 1bhe_A           10 KTPSSCTTLKAD-----SSTATSTIQKAL-NNCDQ---GKAVRLSAGSTS-VFLSGPLSL----PS-GVSLLIDKGVTLR   74 (376)
T ss_dssp             CCCCEEEEEECC-----SSBCHHHHHHHH-TTCCT---TCEEEEECSSSS-EEEESCEEC----CT-TCEEEECTTCEEE
T ss_pred             CCCCeEEECCCC-----CCccHHHHHHHH-HHhcc---CCcEEEECCCCc-eEEEeEEEE----CC-CCEEEECCCeEEE
Confidence            345579999986     479999999999 57886   45676664   8 999999999    68 99999994  999


Q ss_pred             eeCCCCCcCCC------------CCcceEEEeCccceEEEeceEEeCCC--------cccccccccccccCCcccCCceE
Q 047411           97 APNGPNEWKED------------DKSKWFDIQSVDSLQIDGSGTIDGRG--------KAWWDISCKINKKEGCVKLAPTV  156 (226)
Q Consensus        97 ~~~~~~~~~~~------------~~~~~i~~~~~~nv~I~G~G~idG~G--------~~~~~~~~~~~~~~~~~~~rp~~  156 (226)
                      +++++.+|+..            ...+||++.+++||+|+|.|+|||+|        +.||....+....... ..||++
T Consensus        75 ~s~~~~~y~~~~~~~g~~~~~g~~~~~~I~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~ww~~~~~~~~~~~~-~~rp~~  153 (376)
T 1bhe_A           75 AVNNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLK-QNTPRL  153 (376)
T ss_dssp             ECSCSGGGBSSTTCSSCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCE-ECCCCS
T ss_pred             eCCCHHHCcCCCccccccccCCCCcccEEEEECCEeEEEEeCEEEECCCCcccCCCccccccccccccccCcc-CCCCeE
Confidence            99998888631            23579999999999999999999999        5788742210000111 469999


Q ss_pred             EEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          157 LKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       157 i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      |.|.+|+|++|+|++++|||+||+++..|++++|++++|.+|..++|+||||+++|+||+|+||+|.+||
T Consensus       154 i~~~~~~nv~I~~iti~nsp~~~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~~s~nV~I~n~~i~~gD  223 (376)
T 1bhe_A          154 IQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGD  223 (376)
T ss_dssp             EEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSS
T ss_pred             EEEEcceEEEEEeEEEECCCcEEEEEeCCCcEEEEeEEEECCCCCCCCceEeecCCceEEEEeCEEecCC
Confidence            9999999999999999999999999999999999999999998889999999999999999999999998

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=100.00  E-value=3.6e-39  Score=299.92  Aligned_cols=193  Identities=22%  Similarity=0.325  Sum_probs=164.4

Q ss_pred             cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe--eEEEeeC
Q 047411           22 INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS--GSIIAPN   99 (226)
Q Consensus        22 ~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~--g~l~~~~   99 (226)
                      ...+.++|++|||++||.+|||+|||+|| ++|+.   |++|+||+| +|+++++.|    || +++|+++  |+|+++.
T Consensus       152 ~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai-~~c~~---g~~v~vP~G-~y~~g~i~l----ks-~v~L~l~~gatL~~s~  221 (608)
T 2uvf_A          152 AKPQIVNVRDFGAIDDGKTLNTKAIQQAI-DSCKP---GCRVEIPAG-TYKSGALWL----KS-DMTLNLQAGAILLGSE  221 (608)
T ss_dssp             CCCCEEEGGGGTCCSSSSCCCHHHHHHHH-HTCCT---TEEEEECSE-EEEECCEEC----CS-SEEEEECTTEEEEECS
T ss_pred             cCCCEEecccccccCCCCccCHHHHHHHH-HhcCC---CCEEEECCC-ceEecceec----cC-ceEEEecCCcEEEecC
Confidence            34678999999999999999999999999 57876   679999999 999999999    68 9999995  8999999


Q ss_pred             CCCCcCCC----C------CcceEEEeC--------ccceEEEeceEEeCCCccccccccc-ccc---------------
Q 047411          100 GPNEWKED----D------KSKWFDIQS--------VDSLQIDGSGTIDGRGKAWWDISCK-INK---------------  145 (226)
Q Consensus       100 ~~~~~~~~----~------~~~~i~~~~--------~~nv~I~G~G~idG~G~~~~~~~~~-~~~---------------  145 (226)
                      +..+|+..    .      ..++|++.+        ++||+|+|.|+|||+|..||..... .+.               
T Consensus       222 d~~~y~~~~~~~~~~~~~~~~~lI~~~~~~~~~~g~~~ni~I~G~GtIDG~G~~~~~~~~~~~~~g~~~p~~~~~~~~~~  301 (608)
T 2uvf_A          222 NPDDYPAGYRLYPYSTIERPASLINAIDPNNSKPGTFRNIRITGSGVIDGNGWLRAKTAEITDELGRSLPQYVASKNSKV  301 (608)
T ss_dssp             CGGGSCEEECSSTTCCSCEECCSEEECCSSCCCTTSEEEEEEESSCEEECCCBCEEEEEEEECTTSCEEEEECCCCTTTH
T ss_pred             CHHHCcCcceeeeccccccccceEEeeccccccccceeeEEEEeeEEEcCcccccccccccccccccccccccccccccc
Confidence            98888620    0      125888887        6999999999999999988742100 000               


Q ss_pred             -----------------cCC-----cccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCC
Q 047411          146 -----------------KEG-----CVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPN  203 (226)
Q Consensus       146 -----------------~~~-----~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~n  203 (226)
                                       ..+     + ..||++|.|.+|+|++|+|++++|+|+|++++..|++++|+++++.. .+++|
T Consensus       302 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~rP~~i~~~~~~nv~I~giti~ns~~~~i~~~~~~nv~i~~v~i~~-~~~~N  379 (608)
T 2uvf_A          302 HEDGILAKNQVEKAVSDGMDLKNAYG-QRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQT-YDANN  379 (608)
T ss_dssp             HHHBSHHHHHHHHHHHTTCCHHHHHH-HSSCCSEEEESEEEEEEESCEEECCSSCSEEEESCEEEEEESCEEEC-TTCTT
T ss_pred             cccccccccccccccccccccccccc-cCCCeEEEEEeeeeEEEeCcEEecCCCCEEEEecCCCEEEeeEEEcC-CCCCC
Confidence                             000     0 24999999999999999999999999999999999999999999865 56799


Q ss_pred             CCeEEecCeecEEEEeeEEecCC
Q 047411          204 TDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       204 tDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +||||+++|+||+|+||+|++||
T Consensus       380 tDGidi~~s~nV~I~n~~i~~gD  402 (608)
T 2uvf_A          380 GDGIEFGNSQNVMVFNNFFDTGD  402 (608)
T ss_dssp             CCSEEEESCEEEEEESCEEECSS
T ss_pred             CCeEEecCCceEEEEeeEEecCC
Confidence            99999999999999999999998

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=100.00  E-value=8e-39  Score=286.11  Aligned_cols=180  Identities=23%  Similarity=0.452  Sum_probs=155.0

Q ss_pred             cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe-eeeeeCCCcCccEEEEEeeEEEeeCC
Q 047411           22 INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH-PITFTGPCKSSDITIMLSGSIIAPNG  100 (226)
Q Consensus        22 ~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~-~l~l~~~~ks~~v~l~~~g~l~~~~~  100 (226)
                      +..+.|+|++|||++||.+|||+|||+||+ +|+.   |++|+||+| +|+++ +|.|.++  + +++|+++|+++++.+
T Consensus        16 ~~~~~~~V~~~GA~~dg~tddT~Aiq~Ai~-ac~~---g~~V~vP~G-~Yli~~~l~l~g~--s-~v~l~l~G~~l~~~~   87 (422)
T 1rmg_A           16 GATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS---GGLVYIPSG-NYALNTWVTLTGG--S-ATAIQLDGIIYRTGT   87 (422)
T ss_dssp             HHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB---TCEEEECSS-EEEECSCEEEESC--E-EEEEEECSEEEECCC
T ss_pred             cCCcEEEeeeccccCCCCcccHHHHHHHHH-HCCC---CCEEEECCC-eEEeCCceeecCC--C-eEEEEEcCcEEcccC
Confidence            346789999999999999999999999995 7864   789999999 99998 4999763  6 999999998876543


Q ss_pred             CC-CcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceE
Q 047411          101 PN-EWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTH  179 (226)
Q Consensus       101 ~~-~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~  179 (226)
                      .. .|     -.++...++++++|+|.|+|||+|+.||..        .  ..||+++.|.+|+|++|+|++++|+|+|+
T Consensus        88 ~~~~~-----~~~~~~~~~~~i~i~G~G~IdG~G~~~w~~--------~--~~rp~~i~~~~~~nv~I~~iti~nsp~~~  152 (422)
T 1rmg_A           88 ASGNM-----IAVTDTTDFELFSSTSKGAVQGFGYVYHAE--------G--TYGARILRLTDVTHFSVHDIILVDAPAFH  152 (422)
T ss_dssp             CSSEE-----EEEEEEEEEEEECSSSCCEEECCTHHHHTT--------T--CCCCEEEEEEEEEEEEEEEEEEECCSSCS
T ss_pred             CCCce-----EEEEecCceeEEeeccCEEEECCcchhhcC--------C--CCCceEEEEcccceEEEECeEEECCCceE
Confidence            21 11     123445666777788999999999999962        1  34999999999999999999999999999


Q ss_pred             EEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       180 i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +++..|+|++|+|++|.+ .+++|+||||+++ +||+|+||+|++||
T Consensus       153 i~i~~~~nv~I~n~~I~~-~d~~ntDGidi~~-~nV~I~n~~i~~gD  197 (422)
T 1rmg_A          153 FTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWG-SNIWVHDVEVTNKD  197 (422)
T ss_dssp             EEEEEEEEEEEEEEEEEC-CSSTTCCSEEEEE-EEEEEEEEEEESSS
T ss_pred             EEEeCcCCEEEEeEEEEC-CCCCCCccEeecC-CeEEEEeeEEeCCC
Confidence            999999999999999999 4568999999999 99999999999998

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=100.00  E-value=9.1e-37  Score=277.79  Aligned_cols=171  Identities=18%  Similarity=0.133  Sum_probs=149.8

Q ss_pred             cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEE------------eeeeeeCCCcCccEEEEE
Q 047411           24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLV------------HPITFTGPCKSSDITIML   91 (226)
Q Consensus        24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~------------~~l~l~~~~ks~~v~l~~   91 (226)
                      .++++|+||||++|    ||+|||+|| ++|++.+ |++|+||+|++|++            ++|.|    || +++|++
T Consensus        49 ~~~~nV~dfGA~gD----dT~AIqkAI-daCs~~G-GgtV~VPaG~tYLt~sv~~gp~~~~sGpI~L----kS-nVtL~L  117 (600)
T 2x6w_A           49 DPSGNVIQPGPNVD----SRQYLQAAI-DYVSSNG-GGTITIPAGYTWYLGSYGVGGIAGHSGIIQL----RS-NVNLNI  117 (600)
T ss_dssp             CTTSCBCCCCTTCC----CHHHHHHHH-HHHHHTT-CEEEEECTTCEEEECSCCCGGGGGGTEEEEC----CT-TEEEEE
T ss_pred             CcEEeeecCCCCcc----CHHHHHHHH-HHhhhcC-CCEEEECCCCEEEecccccccccccccceEE----cC-ceEEee
Confidence            56899999999998    999999999 5787777 88999999988999            89999    68 999999


Q ss_pred             eeEEEeeCCCCCcCCC-----CCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEE
Q 047411           92 SGSIIAPNGPNEWKED-----DKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLR  166 (226)
Q Consensus        92 ~g~l~~~~~~~~~~~~-----~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~  166 (226)
                      +|+|++++++++|+..     .-.++|.+.+++||+|+|.|+|||+|+.||....     .+  ..||. +.|.+|+   
T Consensus       118 dGtL~as~d~~~yp~~~~v~~~w~slI~~~~~~NItItG~GtIDGqG~~wW~~~~-----~~--~~RP~-l~f~~c~---  186 (600)
T 2x6w_A          118 EGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQ-----LR--NGVAF-GRSYNCS---  186 (600)
T ss_dssp             CSEEEECGGGTTSCEEEEECCSSSSGGGCCCEEEEEEESSCEEECTTCCCSSTTC-----CE--EEEEC-CSEEEEE---
T ss_pred             ecEEEEcCChHHCcccccccccccceEEEecceeEEEecceeeeCCccccccccc-----cC--CCCCE-EEEeeeE---
Confidence            9999999999888631     1134578889999999999999999999997211     11  25788 8899988   


Q ss_pred             EeeeEEeCC-CceEEEE---eCeeeEEEEeEE----EECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          167 MNNMNFINS-PQTHVTV---MGCIGVEFGFLS----IQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       167 i~~i~i~ns-~~~~i~~---~~s~~v~i~~~~----i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      |+|++++|| |+|++++   ..|+||+|+|++    |.+   ++|||||       |+|+||+|.+||
T Consensus       187 I~GITi~NSDP~w~I~iG~~~~c~NVtI~nvtfi~aI~s---spNTDGI-------V~I~nc~I~tGD  244 (600)
T 2x6w_A          187 VTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNS---SVNADHS-------TVYVNCPYSGVE  244 (600)
T ss_dssp             EESCEEESCCCSCSEEECBTTBEEEEEEESCEEECCCCC---SSCCCEE-------EEEECSSSEEEE
T ss_pred             EeCeEEECCCCccEEEeCCCCCcccEEEeCeEEcceEec---CCCCCEE-------EEEEeeEEecCC
Confidence            999999999 9999999   999999999999    776   6999999       999999999998

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=100.00  E-value=3.5e-35  Score=257.75  Aligned_cols=169  Identities=21%  Similarity=0.357  Sum_probs=143.9

Q ss_pred             cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCC
Q 047411           24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNE  103 (226)
Q Consensus        24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~  103 (226)
                      .++|+|++           ++|||+|+ ++|+..+ +++|+||+| +|+.  +  +.+ ++ +++|+++|++.+.  ...
T Consensus        27 ~~~Ctv~~-----------~~aiq~ai-~~c~~~~-g~~v~vP~G-~~l~--l--~~l-~~-~~~l~~~g~~~~~--~~~   84 (362)
T 1czf_A           27 RDSCTFTT-----------AAAAKAGK-AKCSTIT-LNNIEVPAG-TTLD--L--TGL-TS-GTKVIFEGTTTFQ--YEE   84 (362)
T ss_dssp             -CEEEESS-----------HHHHHHHG-GGCSEEE-EESCEECTT-CCEE--E--CSC-CT-TCEEEEESEEEEC--CCC
T ss_pred             CCEEEECC-----------HHHHHHHH-HHhhccC-CCEEEECCC-EEEE--e--ecc-CC-CeEEEEeCcEEec--ccc
Confidence            35688865           67999999 6788766 789999999 8863  2  222 56 8999999988763  356


Q ss_pred             cCCCCCcceEEEeCccceEEEe--ceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEE
Q 047411          104 WKEDDKSKWFDIQSVDSLQIDG--SGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVT  181 (226)
Q Consensus       104 ~~~~~~~~~i~~~~~~nv~I~G--~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~  181 (226)
                      |.    ++||.+.+ +||+|+|  .|+|||+|+.||+....     ++ ..||+++.|.+|+|++|+|++++|+|+|+++
T Consensus        85 w~----g~~i~~~~-~nv~I~G~~~g~IdG~G~~~w~~~~~-----~~-~~rP~~i~~~~~~nv~i~~iti~nsp~~~i~  153 (362)
T 1czf_A           85 WA----GPLISMSG-EHITVTGASGHLINCDGARWWDGKGT-----SG-KKKPKFFYAHGLDSSSITGLNIKNTPLMAFS  153 (362)
T ss_dssp             SC----CCSEEEEE-ESCEEEECTTCEEECCGGGTCCSCTT-----SS-SCCCCCEEEEEEETEEEESCEEECCSSCCEE
T ss_pred             CC----CcEEEEeC-ccEEEEcCCCcEEECCCchhhcccCC-----CC-CCCCeEEEEeecccEEEEEEEEecCCccEEE
Confidence            76    58999865 9999999  69999999999984322     12 6899999999999999999999999999999


Q ss_pred             EeCeeeEEEEeEEEECCCC----CCCCCeEEecCeecEEEEeeEEecCC
Q 047411          182 VMGCIGVEFGFLSIQAPGT----SPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       182 ~~~s~~v~i~~~~i~~~~~----~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +. |+|++|+|++|.++.+    ++|+||||+++|+||+|+||+|++||
T Consensus       154 i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~gD  201 (362)
T 1czf_A          154 VQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQD  201 (362)
T ss_dssp             EE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSS
T ss_pred             Ee-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEecCC
Confidence            99 9999999999999743    79999999999999999999999998

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=100.00  E-value=1.2e-33  Score=246.32  Aligned_cols=164  Identities=24%  Similarity=0.447  Sum_probs=142.0

Q ss_pred             chHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeee-eeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCcc
Q 047411           41 DDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPI-TFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVD  119 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l-~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~  119 (226)
                      .||+|||+|| ++|++.+ +++|+||+| +|+.  + .|    ++ +++|+++|.+.+.  ...|.    ++|+.+.+ +
T Consensus         6 ~dt~aiq~ai-~~c~~~~-g~~v~vP~G-~~~~--l~~l----~~-~~~l~~~g~~~~~--~~~w~----g~~i~~~~-~   68 (339)
T 2iq7_A            6 TDAAAAIKGK-ASCTSII-LNGIVVPAG-TTLD--MTGL----KS-GTTVTFQGKTTFG--YKEWE----GPLISFSG-T   68 (339)
T ss_dssp             SCHHHHHHHG-GGCSEEE-EESCEECTT-CCEE--ECSC----CT-TCEEEEESEEEEC--CCCSC----CCSEEEEE-E
T ss_pred             CCHHHHHHHH-HHhhccC-CCeEEECCC-EEEE--eecc----CC-CeEEEEeCcEEcc--ccccc----CcEEEEEc-c
Confidence            4799999999 6788766 789999999 8874  3 33    56 8999999988763  35676    57898876 9


Q ss_pred             ceEEEec--eEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEEC
Q 047411          120 SLQIDGS--GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA  197 (226)
Q Consensus       120 nv~I~G~--G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~  197 (226)
                      ||+|+|.  |+|||+|+.||+...+   . .+ ..||+++.|.+|+|++|+|++++|+|+|++++..|++++|++++|.+
T Consensus        69 nv~I~G~~gG~IdG~G~~~w~~~~~---~-~~-~~rp~~i~~~~~~nv~i~giti~nsp~~~i~i~~~~nv~i~~~~I~~  143 (339)
T 2iq7_A           69 NININGASGHSIDCQGSRWWDSKGS---N-GG-KTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDN  143 (339)
T ss_dssp             SCEEEECTTCEEECCGGGTCCSCGG---G-SS-SCCCCCEEEEEEEEEEEECCEEECCSSCCEEEESCEEEEEESCEEEC
T ss_pred             cEEEEcCCCCEEECCcccccccccc---c-CC-CCCCeEEEEeeeCcEEEEEEEEEeCCcceEEEeccCCEEEEEEEEEC
Confidence            9999997  7999999999984322   1 12 57999999999999999999999999999999999999999999999


Q ss_pred             CCC----CCCCCeEEecCeecEEEEeeEEecCC
Q 047411          198 PGT----SPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       198 ~~~----~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +..    ++|+||||+++|+||+|+||+|++||
T Consensus       144 ~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gD  176 (339)
T 2iq7_A          144 SAGDSAGGHNTDAFDVGSSTGVYISGANVKNQD  176 (339)
T ss_dssp             GGGGGTTCCSCCSEEEESCEEEEEESCEEECSS
T ss_pred             CccccccCCCCCcEEEcCcceEEEEecEEecCC
Confidence            753    79999999999999999999999997

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=100.00  E-value=4.4e-33  Score=243.50  Aligned_cols=166  Identities=22%  Similarity=0.355  Sum_probs=139.0

Q ss_pred             hHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccce
Q 047411           42 DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSL  121 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv  121 (226)
                      ||+|||+|+ ++|++.+ +++|+||+| +|+.  +  +.+ ++ +++|+++|++++.  ...|.   .++||.+.+ +||
T Consensus         7 ~t~aiq~ai-~~c~~~g-g~~v~vP~G-~~l~--l--~~l-~~-~~~l~~~g~~~~~--~~~w~---~g~~i~~~~-~ni   71 (349)
T 1hg8_A            7 EYSGLATAV-SSCKNIV-LNGFQVPTG-KQLD--L--SSL-QN-DSTVTFKGTTTFA--TTADN---DFNPIVISG-SNI   71 (349)
T ss_dssp             SGGGHHHHH-HHCSEEE-ECCCEECTT-CCEE--E--TTC-CT-TCEEEECSEEEEC--CCCCT---TCCSEEEEE-ESC
T ss_pred             CHHHHHHHH-HhccccC-CCEEEECCC-EEEE--e--ecc-CC-CeEEEEcCceecc--ccccc---CCceEEEEC-ccE
Confidence            688999999 5788766 789999999 8874  2  222 56 8999999988763  35673   268899975 999


Q ss_pred             EEEe--ceEEeCCCcccccccccccccCCcccCCceEEEE-e-ecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEEC
Q 047411          122 QIDG--SGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKF-D-RCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA  197 (226)
Q Consensus       122 ~I~G--~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~-~-~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~  197 (226)
                      +|+|  .|+|||+|+.||+...+    ..+...||++|.| . .|+|++|+|++++|+|+|++++..|++++|++++|.+
T Consensus        72 ~I~G~~~G~IdG~G~~ww~~~~~----~~~~~~rP~~i~~~~~~~~nv~I~giti~nsp~~~i~i~~~~nv~i~~~~I~~  147 (349)
T 1hg8_A           72 TITGASGHVIDGNGQAYWDGKGS----NSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDN  147 (349)
T ss_dssp             EEEECTTCEEECCGGGTCCSCTT----CTTSCCCCSEEEEEEEEESSEEEESCEEECCSSEEEEEESCEEEEEEEEEEEC
T ss_pred             EEEecCCCEEcCCcchhhhcccc----cCCCCCCCeEEEEeecCcCcEEEEEEEEEcCCCceEEEeccCCEEEEEEEEEC
Confidence            9999  69999999999984322    1110269999999 7 8999999999999999999999999999999999998


Q ss_pred             CC-C-----------CCCCCeEEecCeecEEEEeeEEecCC
Q 047411          198 PG-T-----------SPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       198 ~~-~-----------~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +. +           ++|+||||+++|+||+|+||+|.+||
T Consensus       148 ~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~gD  188 (349)
T 1hg8_A          148 RAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQD  188 (349)
T ss_dssp             GGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSS
T ss_pred             CCCccccccccccccCCCCCeEEEccccEEEEEeeEEecCC
Confidence            63 2           58999999999999999999999998

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=100.00  E-value=1.7e-33  Score=245.07  Aligned_cols=164  Identities=24%  Similarity=0.435  Sum_probs=141.0

Q ss_pred             cchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeee-eeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCc
Q 047411           40 ADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPI-TFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSV  118 (226)
Q Consensus        40 ~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l-~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~  118 (226)
                      ..||+|||+|| ++|++.+ +++|+||+| +|+.  + .|    ++ +++|+++|++.+.  ...|.    ++++.+.+ 
T Consensus         5 ~~~t~aiq~ai-~~c~~~g-g~~v~vP~G-~~~~--l~~l----~~-~~~l~~~g~~~~~--~~~w~----g~li~~~~-   67 (336)
T 1nhc_A            5 FTSASEASESI-SSCSDVV-LSSIEVPAG-ETLD--LSDA----AD-GSTITFEGTTSFG--YKEWK----GPLIRFGG-   67 (336)
T ss_dssp             ESSHHHHHHHG-GGCSEEE-EESCEECTT-CCEE--CTTC----CT-TCEEEEESEEEEC--CCCSC----CCSEECCE-
T ss_pred             ECCHHHHHHHH-HHhhccC-CCeEEECCC-EEEE--eecc----CC-CeEEEEeceEEcc--ccccc----CcEEEEec-
Confidence            35799999999 6788766 789999999 8863  3 33    56 8999999988763  35676    57888865 


Q ss_pred             cceEEEec--eEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEE
Q 047411          119 DSLQIDGS--GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQ  196 (226)
Q Consensus       119 ~nv~I~G~--G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~  196 (226)
                      +||+|+|.  |+|||+|+.||+....    ..+ ..||+++.|.+|+|++|+|++++|+|+|++++. |++++|++++|.
T Consensus        68 ~nv~I~G~~gG~IdG~G~~~w~~~~~----~~~-~~rp~~i~~~~~~nv~i~~i~i~nsp~~~i~i~-~~nv~i~~~~I~  141 (336)
T 1nhc_A           68 KDLTVTMADGAVIDGDGSRWWDSKGT----NGG-KTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQ-ATNVHLNDFTID  141 (336)
T ss_dssp             ESCEEEECTTCEEECCGGGTCCSCTT----TSS-SCCCCCEEEEEEEEEEEESCEEECCSSCCEEEE-EEEEEEESCEEE
T ss_pred             CCEEEEcCCCeEEECCccccccccCc----CCC-CCCceEEEEeeeCcEEEEEEEEEeCCccEEEEE-eCCEEEEEEEEE
Confidence            99999997  7999999999984322    112 579999999999999999999999999999999 999999999999


Q ss_pred             CCCC----CCCCCeEEecCeecEEEEeeEEecCC
Q 047411          197 APGT----SPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       197 ~~~~----~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      ++..    ++|+||||+++|+||+|+||+|.+||
T Consensus       142 ~~~~d~~~~~ntDGidi~~s~nV~I~n~~i~~gD  175 (336)
T 1nhc_A          142 NSDGDDNGGHNTDGFDISESTGVYISGATVKNQD  175 (336)
T ss_dssp             CTTHHHHTCCSCCSEEECSCEEEEEESCEEESSS
T ss_pred             CCCcccccCCCCCcEEecCCCeEEEEeCEEEcCC
Confidence            9854    79999999999999999999999998

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=100.00  E-value=4.3e-33  Score=242.70  Aligned_cols=164  Identities=24%  Similarity=0.422  Sum_probs=141.2

Q ss_pred             chHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeee-eeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCcc
Q 047411           41 DDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPI-TFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVD  119 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l-~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~  119 (226)
                      +-++|||+|+ ++|++.+ +++|+||+| +|+.  + .|    |+ +++|+++|++++.  ...|.    ++|+.+.+ +
T Consensus        10 ~g~~aiq~ai-~~c~~~g-g~~v~vP~G-~~l~--l~~l----~~-~~~l~~~g~~~~~--~~~w~----g~li~~~~-~   72 (339)
T 1ia5_A           10 NGASSASKSK-TSCSTIV-LSNVAVPSG-TTLD--LTKL----ND-GTHVIFSGETTFG--YKEWS----GPLISVSG-S   72 (339)
T ss_dssp             GHHHHHHHHG-GGCSEEE-EESCEECTT-CCEE--ECSC----CT-TCEEEEESEEEEC--CCCSC----CCSEEEEE-E
T ss_pred             cchHHHHHHH-HHhhccC-CCeEEECCC-EEEE--eecc----CC-CeEEEEeCcEEcc--ccccc----CcEEEEEc-C
Confidence            3467999999 6788866 789999999 8873  3 33    56 9999999988763  35676    57999876 9


Q ss_pred             ceEEEec--eEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEEC
Q 047411          120 SLQIDGS--GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA  197 (226)
Q Consensus       120 nv~I~G~--G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~  197 (226)
                      ||+|+|.  |+|||+|+.||+...+    ..+ ..||+++.|.+|+|++|+|++++|+|+|++++..|++++|++++|.+
T Consensus        73 nv~I~G~~gG~IdG~G~~~w~~~~~----~~~-~~rp~~i~~~~~~nv~i~~i~i~nsp~~~i~i~~~~nv~i~~~~I~~  147 (339)
T 1ia5_A           73 DLTITGASGHSINGDGSRWWDGEGG----NGG-KTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDN  147 (339)
T ss_dssp             SCEEEECTTCEEECCGGGTCSSCTT----TSS-SCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEEESCEEEC
T ss_pred             cEEEEcCCCeEEeCCCCcccccccc----CCC-CCCCeEEEEeecCcEEEEEEEEEcCCcceEEEecccCeEEeeEEEEC
Confidence            9999997  7999999999984322    112 67999999999999999999999999999999999999999999999


Q ss_pred             CCC----CCCCCeEEecCeecEEEEeeEEecCC
Q 047411          198 PGT----SPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       198 ~~~----~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +.+    ++|+||||+++|+||+|+||+|++||
T Consensus       148 ~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gD  180 (339)
T 1ia5_A          148 SDGDDNGGHNTDAFDIGTSTYVTISGATVYNQD  180 (339)
T ss_dssp             GGGTTTTCCSCCSEEEESCEEEEEESCEEECSS
T ss_pred             CccccccCCCCCcEEecCCceEEEEeeEEEcCC
Confidence            743    79999999999999999999999997

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=100.00  E-value=1.3e-33  Score=245.54  Aligned_cols=159  Identities=19%  Similarity=0.307  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceE
Q 047411           43 SMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQ  122 (226)
Q Consensus        43 t~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~  122 (226)
                      ++|||+ + ++|++.+ +++|+||+| +|+  .|.|    ++ +++|+++|++++.  ...|.    ++||.+.+ +||+
T Consensus         8 ~~aiq~-i-~aC~~~g-g~~v~vP~G-~~l--~l~l----~~-~~~l~~~g~~~~~--~~~w~----~~~i~~~~-~ni~   69 (335)
T 1k5c_A            8 VDDAKD-I-AGCSAVT-LNGFTVPAG-NTL--VLNP----DK-GATVTMAGDITFA--KTTLD----GPLFTIDG-TGIN   69 (335)
T ss_dssp             TTGGGG-C-TTCSEEE-ECCEEECTT-CCE--EECC----CT-TCEEEECSCEEEC--CCCSC----SCSEEEEE-EEEE
T ss_pred             HHHhHH-H-HhcccCC-CCEEEECCC-EEE--EEEe----CC-CeEEEEeccEecc--ccccc----CcEEEEEc-cCEE
Confidence            578999 8 7898877 889999999 886  3444    67 9999999988873  35676    58999974 9999


Q ss_pred             EEe-ceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeee-EEEEeEEEECCCC
Q 047411          123 IDG-SGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIG-VEFGFLSIQAPGT  200 (226)
Q Consensus       123 I~G-~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~-v~i~~~~i~~~~~  200 (226)
                      |+| .|+|||+|+.||+...+    ..+ ..||+++.|.+|+ ++|+|++++|||+|++++..|++ |+|++++|.++..
T Consensus        70 I~G~~G~idG~G~~ww~~~~~----~~~-~~rP~~i~~~~~~-v~i~giti~nsp~~~i~i~~~~n~v~i~~v~I~~~~~  143 (335)
T 1k5c_A           70 FVGADHIFDGNGALYWDGKGT----NNG-THKPHPFLKIKGS-GTYKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAG  143 (335)
T ss_dssp             EECTTCEEECCGGGTCCSCTT----TSS-SCCCCCSEEEEEE-EEEESCEEESCSSCCEEEEEEEEEEEEESCEEECGGG
T ss_pred             EEeCccEEcCChhHhhhcccc----cCC-CCCCeEEEEeceE-EEEEEEEEECCCcceEEEEccCCeEEEEEEEEECCCC
Confidence            999 59999999999984322    112 6799999999999 99999999999999999999999 9999999999853


Q ss_pred             -----CCCCCeEEecCeecEEEEeeEEecCC
Q 047411          201 -----SPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       201 -----~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                           ++|+||||+ +|+||+|+||+|++||
T Consensus       144 d~~~~~~NtDGidi-~s~nV~I~n~~i~~gD  173 (335)
T 1k5c_A          144 DTKNLGHNTDGFDV-SANNVTIQNCIVKNQD  173 (335)
T ss_dssp             GGGGCCCSCCSEEE-ECSSEEEESCEEESSS
T ss_pred             cccccCCCCCeEcc-cCCeEEEEeeEEEcCC
Confidence                 899999999 9999999999999998

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=99.97  E-value=1e-29  Score=228.59  Aligned_cols=167  Identities=22%  Similarity=0.325  Sum_probs=140.6

Q ss_pred             ccceEE-eeecCccCCCCcchHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe--eEEEee
Q 047411           23 NADEFN-VLDFGAAGDGNADDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS--GSIIAP   98 (226)
Q Consensus        23 ~~~~~~-v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~--g~l~~~   98 (226)
                      ....++ |++|||++||.+|||+|||+||+ +|++. + +++|+||+| +|++++|.|    |+ +++|+++  ++|+++
T Consensus        18 ~~~~~~~V~dfGA~gDG~tDdT~Aiq~Aid-ac~~~~g-gg~V~vP~G-tYl~g~I~l----ks-~v~L~l~~GatL~~s   89 (464)
T 1h80_A           18 QDVNYDLVDDFGANGNDTSDDSNALQRAIN-AISRKPN-GGTLLIPNG-TYHFLGIQM----KS-NVHIRVESDVIIKPT   89 (464)
T ss_dssp             CSEEEEHHHHHCCCTTSSSBCHHHHHHHHH-HHHTSTT-CEEEEECSS-EEEECSEEC----CT-TEEEEECTTCEEEEC
T ss_pred             CcceeeehhccCcCCCCCchhHHHHHHHHH-HHhhccC-CcEEEECCC-eEEEeeEec----cC-ceEEEEcCCcEEEec
Confidence            467889 99999999999999999999994 67654 6 889999999 999999999    68 9999998  588887


Q ss_pred             CC--CCCcCCCCCcceEEE---eCccceEEEece---EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeee
Q 047411           99 NG--PNEWKEDDKSKWFDI---QSVDSLQIDGSG---TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNM  170 (226)
Q Consensus        99 ~~--~~~~~~~~~~~~i~~---~~~~nv~I~G~G---~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i  170 (226)
                      .+  ...|      +++.+   .+++|++|+|.|   +|||+|+.               ..||++|.|.+|+|++|+|+
T Consensus        90 ~~td~~~y------~~~~~~~~~~~~nItI~G~Gg~~~iDG~G~~---------------~~rp~~i~~~~~~Nv~I~gI  148 (464)
T 1h80_A           90 WNGDGKNH------RLFEVGVNNIVRNFSFQGLGNGFLVDFKDSR---------------DKNLAVFKLGDVRNYKISNF  148 (464)
T ss_dssp             CCTTCSCE------EEEEESSSSCEEEEEEEECTTCEEEECTTCS---------------CCBEEEEEECSEEEEEEEEE
T ss_pred             cCCCcccC------CceEeecccCccceEEECcCcceEEeCCCCC---------------CCCceEEEEEeeccEEEeee
Confidence            64  3333      34443   678999999998   99998852               35889999999999999999


Q ss_pred             EEeCCCceEEE-------------EeCeeeEEEEeEEEECCCCCCCCCe-EEecCeecEEEEeeEEe
Q 047411          171 NFINSPQTHVT-------------VMGCIGVEFGFLSIQAPGTSPNTDG-IHIQASSNVYIHNAHIS  223 (226)
Q Consensus       171 ~i~ns~~~~i~-------------~~~s~~v~i~~~~i~~~~~~~ntDG-i~~~~s~~v~I~n~~i~  223 (226)
                      +++|+  |+++             ...|+||+|+|++|.++   ++++| ++...|+||+|+||++.
T Consensus       149 ti~n~--w~ih~s~~V~i~NtDGi~i~s~nV~I~n~~I~~g---ddgiGs~~~~~~~NV~V~n~~~~  210 (464)
T 1h80_A          149 TIDDN--KTIFASILVDVTERNGRLHWSRNGIIERIKQNNA---LFGYGLIQTYGADNILFRNLHSE  210 (464)
T ss_dssp             EEECC--SCBSCSEEECEEEETTEEEEEEEEEEEEEEEESC---CTTCEEEEESEEEEEEEEEEEEE
T ss_pred             EEecc--ceEeeceeeeeecCCCceeeccCEEEeceEEecC---CCeEEecccCCEeEEEEEeeEEE
Confidence            99995  4443             13799999999999996   57889 88899999999999954

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=99.96  E-value=1.3e-29  Score=231.88  Aligned_cols=176  Identities=19%  Similarity=0.206  Sum_probs=143.5

Q ss_pred             ccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEE-eeeeeeCCCcCccEEEEEee----EEEe
Q 047411           23 NADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLV-HPITFTGPCKSSDITIMLSG----SIIA   97 (226)
Q Consensus        23 ~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~-~~l~l~~~~ks~~v~l~~~g----~l~~   97 (226)
                      .++.++|+||||++||.+|||+|||+||+ +      |++|+||+| +|++ ++|.|    ++ +++|++++    +|++
T Consensus        19 ~~~~~nV~dfGA~gDG~tDdT~Aiq~Ai~-~------Gg~V~iP~G-tYlis~~l~l----~s-nv~L~g~g~~~t~L~~   85 (609)
T 3gq8_A           19 KQFGVSVKTYGAKGDGVTDDIRAFEKAIE-S------GFPVYVPYG-TFMVSRGIKL----PS-NTVLTGAGKRNAVIRF   85 (609)
T ss_dssp             CSSSEEGGGGTCCCEEEEECHHHHHHHHH-T------SSCEEECSE-EEEESSCEEE----CS-SEEEEESCTTTEEEEE
T ss_pred             CCcEEEeEecccCCCCCchhHHHHHHHHH-c------CCEEEECCc-cEEEeCceEE----CC-CcEEEEeeCCCCEEEe
Confidence            46789999999999999999999999995 3      358999999 9999 89999    57 99999974    7777


Q ss_pred             eCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc
Q 047411           98 PNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ  177 (226)
Q Consensus        98 ~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~  177 (226)
                      +++...|.. -..+++.+.+++||+|+|. +|||+|+.||.. .+    .++ ..||++|.|.+|+|++|++++++|+|+
T Consensus        86 ~~~~p~~~~-li~~lI~a~~~~NItItG~-TIDGNG~~~g~~-~~----~~g-~~RP~lI~f~~c~NV~I~gVti~NSp~  157 (609)
T 3gq8_A           86 MDSVGRGES-LMYNENVTTGNENIFLSSF-TLDGNNKRLGQG-IS----GIG-GSRESNLSIRACHNVYIRDIEAVDCTL  157 (609)
T ss_dssp             CTTCCSSCC-SEEESCTTTCCEEEEEEEE-EEECCGGGGCSS-CC----CSS-TTTTCSEEEESCEEEEEEEEEEESCSS
T ss_pred             CCCCCCCCc-eeeeeeeecccccEEEEee-EEECCccccCcc-cc----cCC-CCCccEEEEEeeceEEEEeeEEEeCCC
Confidence            655433320 0113456678999999996 999999854431 11    122 579999999999999999999999999


Q ss_pred             eEEEEeC-----------------eeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          178 THVTVMG-----------------CIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       178 ~~i~~~~-----------------s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      +++.+..                 |+||+|+|++|++.    ..|+|-+.+|+||+|+||++.
T Consensus       158 ~gI~I~~~~~NDGid~DGi~fd~~S~NV~I~Nc~I~~t----GDDcIaIksseNI~I~Nc~~~  216 (609)
T 3gq8_A          158 HGIDITCGGLDYPYLGDGTTAPNPSENIWIENCEATGF----GDDGITTHHSQYINILNCYSH  216 (609)
T ss_dssp             CSEEEECSSSSCCCCCTTCCCSSCCEEEEEESCEEESC----SSCSEEECSCEEEEEESCEEE
T ss_pred             CCeEEeCCCCCccccCCCccccccceeEEEEeeEEEec----CCCEEEecCCeeEEEEeEEEE
Confidence            9888764                 79999999999763    459999999999999999984

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=99.96  E-value=4.7e-29  Score=217.79  Aligned_cols=172  Identities=16%  Similarity=0.215  Sum_probs=131.2

Q ss_pred             cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCC---eEEEe-eeeeeCCCcCccEEEEEe--eEEEe
Q 047411           24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGK---TFLVH-PITFTGPCKSSDITIMLS--GSIIA   97 (226)
Q Consensus        24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~---tY~~~-~l~l~~~~ks~~v~l~~~--g~l~~   97 (226)
                      ...++|+||||+|||++|||+|||+||+++|+..+ |++|+||+|.   +|+++ ++.|    |+ +++|+++  +++.+
T Consensus        49 s~~~NVkDFGAkGDGvTDDTaAIQkAIdaA~a~~G-GGtVyVPaG~~~~tYlvt~tI~L----kS-nV~L~Ge~~AtIl~  122 (514)
T 2vbk_A           49 KEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPS-GGELFIPASNQAVGYIVGSTLLI----PG-GVNIRGVGKASQLR  122 (514)
T ss_dssp             TTCCBGGGGCCCCSSSSCCHHHHHHHHHHHHTSTT-CEEEECCCCSSTTCEEESSCEEE----CT-TEEEECCSTTSEEE
T ss_pred             CcEEEeeccCcCCCCCcccHHHHHHHHHHHhhcCC-CeEEEECCCCcceeEEECCeEEe----cC-CeEEEEecCceEee
Confidence            46899999999999999999999999987777656 8899999994   69984 8888    67 9999988  35544


Q ss_pred             eCCC--CCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCc-eEEEEeecCcEEEeeeE--E
Q 047411           98 PNGP--NEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAP-TVLKFDRCNNLRMNNMN--F  172 (226)
Q Consensus        98 ~~~~--~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp-~~i~~~~~~nv~i~~i~--i  172 (226)
                      +...  .........+++.+.+++|++|+|.|+|||++..|.....         ..|+ ..+   .++++.|++++  +
T Consensus       123 s~~~I~GtIia~~y~s~I~~~~VeNIaITG~GTIDG~g~n~t~e~~---------~~Rq~~~~---~fdnV~Vn~Vt~~v  190 (514)
T 2vbk_A          123 AKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDS---------VIRQVYGW---VFDNVMVNEVETAY  190 (514)
T ss_dssp             ECTTCCSEEEEECCCSCCSCEEEESCEEECCSSSEEEEESCCTTCS---------SCCCEESE---EEESCEEEEEEEEE
T ss_pred             ccccccccEEeccCCccccccCceEEEEECCCeEeCCCCCccccce---------eeeccceE---EeeeEEEEeEEEeE
Confidence            3221  0000011235667778999999999999998875532110         2333 233   26799999995  4


Q ss_pred             eCCCceEEEEeCeeeEEEE-eEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          173 INSPQTHVTVMGCIGVEFG-FLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       173 ~ns~~~~i~~~~s~~v~i~-~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      .+++.|++++..|++++++ ++.+.             ++|+||.|.||+|+.||
T Consensus       191 ~~Sg~WTIhPi~Cqnvt~r~gL~f~-------------eSCrNV~IsnC~FsVGD  232 (514)
T 2vbk_A          191 LMQGLWHSKFIACQAGTCRVGLHFL-------------GQCVSVSVSSCHFSRGN  232 (514)
T ss_dssp             EEESEEEEEEESCEEEEEEEEEEEE-------------SCCEEEEEESCEEECTT
T ss_pred             eccCcEEEeEeccCceecccCcccc-------------CCCCeEEEeccEEecCc
Confidence            5889999999999999987 55553             38999999999999998

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=99.94  E-value=4.3e-28  Score=222.46  Aligned_cols=174  Identities=12%  Similarity=0.204  Sum_probs=136.7

Q ss_pred             EEeeecCccCCCCcchHHHHHHHHHHhccc-------------------------CCCCCEEEecCCCeEEE---eeeee
Q 047411           27 FNVLDFGAAGDGNADDSMAFIKAWNNTCSA-------------------------TAKSPTMVIPKGKTFLV---HPITF   78 (226)
Q Consensus        27 ~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~-------------------------~g~g~~v~iP~G~tY~~---~~l~l   78 (226)
                      ++...|||++||.++.+.+|. ++.+++..                         .+ |++|+||+| +|++   +++.|
T Consensus       143 ~n~~~~~~~~dg~~~~~~~l~-ifa~p~~~~~~~P~~~~~~~~~~~~g~~~~~~~~g-gg~v~vP~G-~yl~g~~G~i~l  219 (549)
T 1x0c_A          143 FDDDLISLAPSGARQPENALL-IFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTS-ASTVVFNPG-VYYFTGHDHMVL  219 (549)
T ss_dssp             EGGGEEEETTTTEEEESEEEE-EEEECCCCTTTSCCTTCSSEECCCSEECCCTTTCC-CSEEEECSE-EEECCTTCCEEE
T ss_pred             ECCccccccccCcCCCcceEE-EEcCChhhccCCCCcCCCCceeeccccccccccCC-CCEEEECCe-EEecCCceEEEe
Confidence            334469999999999998887 44233322                         35 889999999 9997   58999


Q ss_pred             eCCCcCccEE-EEEe-e-EEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCce
Q 047411           79 TGPCKSSDIT-IMLS-G-SIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPT  155 (226)
Q Consensus        79 ~~~~ks~~v~-l~~~-g-~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~  155 (226)
                          || +++ |+++ | .|++             +++...+++||+|+|.|+|||+|..||...... ....+ ..||+
T Consensus       220 ----~s-~~~~L~l~~GA~L~g-------------s~~~~~~~~nv~ItG~GtIDG~G~~ww~~~~~~-~~~~~-~~rp~  279 (549)
T 1x0c_A          220 ----SS-SVTWVYFAPGAYVKG-------------AVEFLSTASEVKASGHGVLSGEQYVWYADPDEG-YQKAS-GANNN  279 (549)
T ss_dssp             ----CT-TCCEEEECTTEEEES-------------CEEECCCSSEEEEESSCEEECTTSCTTEEGGGT-TEECG-GGCSC
T ss_pred             ----cC-CCCeEecCCCCEEEE-------------EEEEecCceeEEEEeeEEEECCCceecccCccc-ccccc-cCCCc
Confidence                68 999 9998 4 4542             223333799999999999999999999632110 00112 34788


Q ss_pred             EEEE------eecCcEEEeeeEEeCCCceEEEEe-Ce-ee--EEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          156 VLKF------DRCNNLRMNNMNFINSPQTHVTVM-GC-IG--VEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       156 ~i~~------~~~~nv~i~~i~i~ns~~~~i~~~-~s-~~--v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      ++.|      .+|+|++|+|++++|||+|++++. .| ++  ++|+++++.++. .+||||||+.  +||+|+||+|++|
T Consensus       280 ~i~~~~~~~~~~c~nV~I~Giti~Nsp~w~i~i~~~~~~ni~V~I~n~~i~~~~-~~NTDGidi~--~nV~I~n~~i~~g  356 (549)
T 1x0c_A          280 GLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAF-YGQTDGLEMY--PGTILQDVFYHTD  356 (549)
T ss_dssp             CCCSEEEECCSSCEEEEEESCEEECCSSCSEEEECSCGGGEEEEEEEEEEECCC-BTTCCCCBCC--TTCEEEEEEEEES
T ss_pred             eEEEeeccccCCceEEEEECcEEECCCceeEEeeccCCCCCeEEEEeeEeEcCC-CCCCCccccc--CCEEEEeeEEeCC
Confidence            8888      999999999999999999999966 45 59  999999999853 4789999999  9999999999999


Q ss_pred             C
Q 047411          226 T  226 (226)
Q Consensus       226 D  226 (226)
                      |
T Consensus       357 D  357 (549)
T 1x0c_A          357 D  357 (549)
T ss_dssp             S
T ss_pred             C
Confidence            8

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=99.93  E-value=2.1e-26  Score=211.52  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=119.6

Q ss_pred             CCCCEEEecCCCeEEE-------------eeeeeeCCCcCccEE-EEEe-e-EEEeeCCCCCcCCCCCcceEEEeCccce
Q 047411           58 AKSPTMVIPKGKTFLV-------------HPITFTGPCKSSDIT-IMLS-G-SIIAPNGPNEWKEDDKSKWFDIQSVDSL  121 (226)
Q Consensus        58 g~g~~v~iP~G~tY~~-------------~~l~l~~~~ks~~v~-l~~~-g-~l~~~~~~~~~~~~~~~~~i~~~~~~nv  121 (226)
                      | |++|+||+| +|++             ++|.|    || +++ |+++ | +|+              .++.+.+++||
T Consensus       230 g-gg~v~vP~G-~yl~~~~~~~gpc~~g~G~i~l----kS-nvt~L~L~~GA~l~--------------g~i~~~~~~nv  288 (574)
T 1ogo_X          230 A-KSILYFPPG-VYWMNQDQSGNSGKLGSNHIRL----NS-NTYWVYLAPGAYVK--------------GAIEYFTKQNF  288 (574)
T ss_dssp             S-SSEEEECSE-EEEECBCTTCCBSCSSSCCEEC----CT-TCCEEEECTTEEEE--------------SCEEECCSSCE
T ss_pred             C-CCEEEECCc-EEEEeccccCCcccccceEEEe----cC-CCceEEecCCcEEE--------------ccEEEeCceeE
Confidence            5 789999999 9999             46777    67 888 9887 4 443              34788899999


Q ss_pred             EEEeceEEeCCCcccccccccccccCCcccCCceEEEEe------ecCcEEEeeeEEeCCCceEEEEeCeeeE--EEEeE
Q 047411          122 QIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFD------RCNNLRMNNMNFINSPQTHVTVMGCIGV--EFGFL  193 (226)
Q Consensus       122 ~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~------~~~nv~i~~i~i~ns~~~~i~~~~s~~v--~i~~~  193 (226)
                      +|+|.|+|||+|+.||....+  ....+ ..||+++.|.      +|+|++|+|++++|||+|++++..|+++  +|+++
T Consensus       289 ~ItG~GtIDG~G~~ww~~~~~--~~~~~-~~rp~~i~~~~~~~~~~c~NV~I~Giti~NSp~w~i~~~~c~nV~~~I~nv  365 (574)
T 1ogo_X          289 YATGHGILSGENYVYQANAGD--NYIAV-KSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDY  365 (574)
T ss_dssp             EEESSCEEECTTSCTTCBTTT--TTBSC-CCTTTBCCSEEECSCCSSEEEEEESCEEECCSSCSEEECSSSCEEEEEEEE
T ss_pred             EEEeCEEEeCCCccccccccc--ccccc-cCCcceEEEEeccccCCceeEEEECeEEECCCCcEEeecCCCChhhEEEee
Confidence            999999999999999973211  01112 4588888887      9999999999999999999999999999  99999


Q ss_pred             EEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          194 SIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       194 ~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      ++.++. ..||||||+.  +||+|+||+|++||
T Consensus       366 ~i~~~~-~~nTDGIDi~--~NV~I~nc~I~~gD  395 (574)
T 1ogo_X          366 KQVGAF-FFQTDGPEIY--PNSVVHDVFWHVND  395 (574)
T ss_dssp             EEECCC-STTCCCCBCC--TTCEEEEEEEEESS
T ss_pred             EeeCCC-CCCCccCccc--CCEEEEeeEEECCC
Confidence            998743 2469999999  99999999999998

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=99.92  E-value=2.3e-25  Score=196.04  Aligned_cols=174  Identities=18%  Similarity=0.305  Sum_probs=127.1

Q ss_pred             eEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe--------eeeeeCCCcCccEEEEEee----
Q 047411           26 EFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH--------PITFTGPCKSSDITIMLSG----   93 (226)
Q Consensus        26 ~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~--------~l~l~~~~ks~~v~l~~~g----   93 (226)
                      .++|+||||+|||.+|||+|||+||++|++. + |++|+||+| +|++.        ++.+    ++ +++|+++|    
T Consensus         2 ~~~v~~~ga~~dg~~ddt~aiq~Ai~~a~~~-g-g~~v~~p~G-~y~~~~~~~~~~g~l~~----~~-~v~l~g~g~~~t   73 (377)
T 2pyg_A            2 DYNVKDFGALGDGVSDDRASIQAAIDAAYAA-G-GGTVYLPAG-EYRVSAAGEPGDGCLML----KD-GVYLAGAGMGET   73 (377)
T ss_dssp             CEEGGGGTCCCEEEEECHHHHHHHHHHHHHT-T-SEEEEECSE-EEEECCCSSGGGCSEEC----CT-TEEEEESSBTTE
T ss_pred             EeeeeecCCCCCCCcchHHHHHHHHHHHHhc-C-CCEEEECCe-EEEEcccccCCcccEEe----cC-CeEEEEcCCCCc
Confidence            6899999999999999999999999765544 6 789999999 99994        7888    57 99999984    


Q ss_pred             EEEeeCCCCCcCC----CCCcceEEEeCccceEEEec-----eEEeCCCcccccccccccccCCcccCCceEEEEeecCc
Q 047411           94 SIIAPNGPNEWKE----DDKSKWFDIQSVDSLQIDGS-----GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNN  164 (226)
Q Consensus        94 ~l~~~~~~~~~~~----~~~~~~i~~~~~~nv~I~G~-----G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~n  164 (226)
                      +|++.++...+..    .....-....++++++|.|.     |++||    ||...            .|.  .+..|++
T Consensus        74 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~I~G~~~~~~G~idG----w~~~~------------~~~--~~~~~~n  135 (377)
T 2pyg_A           74 VIKLIDGSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDG----WFNGY------------IPG--GDGADRD  135 (377)
T ss_dssp             EEEECTTCBSCEEEEEECCTTSCCEEEEEEEEEEECCGGGCBSCEEE----EEECS------------CTT--SSCCEEE
T ss_pred             EEEecCCCccCccceEeccCCCcceEEEEEEEEEECCCccCCccccc----eeccc------------Ccc--ccccccc
Confidence            4566554433220    00011112345789999997     88887    88621            110  1247999


Q ss_pred             EEEeeeEEeCCCceEEEEeCee-eEEEEeEEEECCC-------------------CCCCCCeEEecC-eecEEEEeeEEe
Q 047411          165 LRMNNMNFINSPQTHVTVMGCI-GVEFGFLSIQAPG-------------------TSPNTDGIHIQA-SSNVYIHNAHIS  223 (226)
Q Consensus       165 v~i~~i~i~ns~~~~i~~~~s~-~v~i~~~~i~~~~-------------------~~~ntDGi~~~~-s~~v~I~n~~i~  223 (226)
                      ++|++++++|++.|++++..|. +++++|+.+....                   ..++.|||++.. |++++|+||++.
T Consensus       136 v~I~~~~i~n~~~~gi~~~~~~~~~~i~n~~~~~~~~dGI~~~~s~~~~i~~N~~~~~~~~GI~~~~~s~~v~I~nN~i~  215 (377)
T 2pyg_A          136 VTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAY  215 (377)
T ss_dssp             EEEEEEEEECCSSCSEEECSSEEEEEEESCEEESCSSCSEEEESEEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEE
T ss_pred             eEEEeEEEEecccceEEeecccCCeEEEeEEeecCCCCceeEeccCCcEEECcEEEccccCcEEEEeccCCeEEECCEEE
Confidence            9999999999999999998765 5677766663211                   125688888776 888888888887


Q ss_pred             cC
Q 047411          224 NG  225 (226)
Q Consensus       224 ~g  225 (226)
                      ..
T Consensus       216 ~~  217 (377)
T 2pyg_A          216 GN  217 (377)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=99.82  E-value=2.3e-20  Score=173.55  Aligned_cols=162  Identities=19%  Similarity=0.271  Sum_probs=123.1

Q ss_pred             cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCC---------CEEEecCCCeEEE-eeeeeeCCCcCccEEEEEee
Q 047411           24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKS---------PTMVIPKGKTFLV-HPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g---------~~v~iP~G~tY~~-~~l~l~~~~ks~~v~l~~~g   93 (226)
                      ...++|+||||+|||++|||+|||+||+ ++++.| +         .+|+||+| +|++ ++|.+    ++ ++.|..++
T Consensus        47 ~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~-~a~~~G-ggc~~st~~~~~V~~P~G-tYlvs~tI~l----~~-~t~L~G~~  118 (758)
T 3eqn_A           47 PVFRNVKNYGAKGDGNTDDTAAIQAAIN-AGGRCG-QGCDSTTTQPALVYFPPG-TYKVSSPLVV----LY-QTQLIGDA  118 (758)
T ss_dssp             CSEEEGGGGTCCCEEEEECHHHHHHHHH-TTSCSC-TTCCCCSSSCEEEEECSS-EEEESSCEEC----CT-TEEEEECS
T ss_pred             eEEEEHHHcCcCCCCCchhHHHHHHHHH-Hhhhcc-cccccccccceEEEECCc-eEEEcccEEc----cC-CeEEEecC
Confidence            4467999999999999999999999996 454433 2         58999999 9998 48998    57 99999883


Q ss_pred             ----EEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEee
Q 047411           94 ----SIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNN  169 (226)
Q Consensus        94 ----~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~  169 (226)
                          +|+++++.   .+   ..+          |.+ ...+++|..||...               ...+..++|+.|+ 
T Consensus       119 ~~~pvIka~~~F---~G---~~l----------i~~-d~y~~~G~~w~~~~---------------~~F~r~irNlviD-  165 (758)
T 3eqn_A          119 KNLPTLLAAPNF---SG---IAL----------IDA-DPYLAGGAQYYVNQ---------------NNFFRSVRNFVID-  165 (758)
T ss_dssp             SSCCEEEECTTC---CS---SCS----------EES-SCBCGGGCBSSCGG---------------GCCCEEEEEEEEE-
T ss_pred             CCCCeEecCCCC---CC---cce----------eec-cccCCCCccccccc---------------cceeeeecceEEe-
Confidence                67764442   21   122          233 23456778888521               1223356777777 


Q ss_pred             eEEeCCCceEEEEeCeeeEEEEeEEEECCCCCC-CCCeEEecCeecEEEEeeEEecCC
Q 047411          170 MNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSP-NTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       170 i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~-ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      ++-.+++.++++...|++..+.||.|+.+..+. .++||+++.++...|+|+.|..|+
T Consensus       166 ~t~~~~~~~gIhw~vaQatsL~Nv~i~m~~~sg~~~~GI~~e~GSgg~i~Dl~f~GG~  223 (758)
T 3eqn_A          166 LRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVFNGGN  223 (758)
T ss_dssp             CTTCSSCEEEEECCCCSSEEEEEEEEECCCSTTCCEEEEEECSCCCCEEEEEEEESCS
T ss_pred             ccccCCCceEEEEEecCceEEEEEEEEecCCCCCcceeEEecCCCceEEEeeEEeCCc
Confidence            666677789999999999999999999987654 489999998889999999999886

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=99.54  E-value=6.2e-14  Score=122.58  Aligned_cols=181  Identities=13%  Similarity=0.229  Sum_probs=121.6

Q ss_pred             cccccceEEeeec----CccCCCCcchHHHHHHHHHHhcc------cCCCCCEEEecCCCeEEE-eeeeeeCCCcCccEE
Q 047411           20 IRINADEFNVLDF----GAAGDGNADDSMAFIKAWNNTCS------ATAKSPTMVIPKGKTFLV-HPITFTGPCKSSDIT   88 (226)
Q Consensus        20 ~~~~~~~~~v~dy----GA~~dg~~ddt~aiq~Ai~~a~~------~~g~g~~v~iP~G~tY~~-~~l~l~~~~ks~~v~   88 (226)
                      ++++...|+|++|    +|++++.+|++++|+++|.+..+      +.. |++|++|+| +|.+ +++.+.   |+ .++
T Consensus         8 ~~~~~~~~~vt~~~~~~~~~~~~~~d~~~~i~~~ia~~~~~~~~~~A~p-GdvI~L~~G-~Y~l~g~ivId---kp-~Lt   81 (410)
T 2inu_A            8 PLNSPNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARP-GAAIIIPPG-DYDLHTQVVVD---VS-YLT   81 (410)
T ss_dssp             ----CCEEETTTCCBTTBTTCCHHHHHHHHHHHHHHHHHHHCCCTTSCC-CEEEECCSE-EEEECSCEEEC---CT-TEE
T ss_pred             ccccCceEEEEEecccCCCcCCCchhHHHHHHHHHHHhhcccccccCCC-CCEEEECCC-eeccCCcEEEe---cC-cEE
Confidence            3456889999999    89999999999999999966543      223 899999999 9996 899996   54 499


Q ss_pred             EEEee--E----EEeeCCCCCc----CC---------CCCcceEEEeC-----ccceEEEeceEEeCC-----Ccccccc
Q 047411           89 IMLSG--S----IIAPNGPNEW----KE---------DDKSKWFDIQS-----VDSLQIDGSGTIDGR-----GKAWWDI  139 (226)
Q Consensus        89 l~~~g--~----l~~~~~~~~~----~~---------~~~~~~i~~~~-----~~nv~I~G~G~idG~-----G~~~~~~  139 (226)
                      |..++  +    |..-.....|    ++         ...++.|.++.     .++|+|.| =+|+|-     |..+   
T Consensus        82 L~G~~~g~~s~~Id~~~~~~g~~~~~g~Gs~I~V~a~~~~g~a~~V~~~g~~r~s~V~~~~-v~I~G~~~~~~G~s~---  157 (410)
T 2inu_A           82 IAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRD-FCLDGVGFTPGKNSY---  157 (410)
T ss_dssp             EECSCCCCCCHHHHHTSCCTTCSCCSCCSEEEEECCCTTSCEEEEECCCSSSCEECCEEES-CEEECCCCSSSTTSC---
T ss_pred             EEecCCCcceeEEecccccCcccccCCCCcEEEEeccccccceeEEeeccCcccCCcEECC-EEEECCEeecCCCCc---
Confidence            87753  3    3211111232    21         01234455542     25666666 355554     4322   


Q ss_pred             cccccccCCcccCCceEEEEee-cCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECC-----------C--------
Q 047411          140 SCKINKKEGCVKLAPTVLKFDR-CNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAP-----------G--------  199 (226)
Q Consensus       140 ~~~~~~~~~~~~~rp~~i~~~~-~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~-----------~--------  199 (226)
                                 ...-.+|.+.. +++++|+++.|.+. .|++.+..+++++|+++.|...           .        
T Consensus       158 -----------~~~dAGI~v~~~~d~~~I~nn~i~~~-~fGI~l~~a~~~~I~~N~I~e~GNgI~L~G~~~~~~I~~N~i  225 (410)
T 2inu_A          158 -----------HNGKTGIEVASDNDSFHITGMGFVYL-EHALIVRGADALRVNDNMIAECGNCVELTGAGQATIVSGNHM  225 (410)
T ss_dssp             -----------CCSCEEEEECSCEESCEEESCEEESC-SEEEEETTEESCEEESCEEESSSEEEEECSCEESCEEESCEE
T ss_pred             -----------ccCceeEEEeccCCeEEEECCEEecc-cEEEEEccCCCcEEECCEEEecCCceeeccccccceEeccee
Confidence                       22335677765 78889999999998 8899999999999999999831           1        


Q ss_pred             -CCCCCCeEEecCeecEEEEeeEE
Q 047411          200 -TSPNTDGIHIQASSNVYIHNAHI  222 (226)
Q Consensus       200 -~~~ntDGi~~~~s~~v~I~n~~i  222 (226)
                       .....+||.++.+.+.+|+++.+
T Consensus       226 ~~~~dG~gIyl~ns~~~~I~~N~i  249 (410)
T 2inu_A          226 GAGPDGVTLLAENHEGLLVTGNNL  249 (410)
T ss_dssp             ECCTTSEEEEEESEESCEEESCEE
T ss_pred             eecCCCCEEEEEeCCCCEEECCCc
Confidence             01223347777777777777765

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=99.33  E-value=1.5e-11  Score=114.78  Aligned_cols=94  Identities=20%  Similarity=0.372  Sum_probs=70.7

Q ss_pred             cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe-eeeeeCCCcCccEEEEEee--EEEeeCC
Q 047411           24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH-PITFTGPCKSSDITIMLSG--SIIAPNG  100 (226)
Q Consensus        24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~-~l~l~~~~ks~~v~l~~~g--~l~~~~~  100 (226)
                      ...++|+||||+|||++|||+|||+||+ ++.  + +.+|+||+| +|++. +|.+    ++ +++|..++  +|... .
T Consensus       398 ~~~vnVkd~GA~GDG~tDDT~Ai~~al~-aa~--~-g~~v~~P~G-~Y~vt~Ti~i----p~-~~~ivG~~~~~I~~~-G  466 (758)
T 3eqn_A          398 SDFVSVRSQGAKGDGHTDDTQAIKNVFA-KYA--G-CKIIFFDAG-TYIVTDTIQI----PA-GTQIVGEVWSVIMGT-G  466 (758)
T ss_dssp             GGEEETTTTTCCCEEEEECHHHHHHHHH-HHT--T-TSEEECCSE-EEEESSCEEE----CT-TCEEECCSSEEEEEC-S
T ss_pred             cceEEeeeccccCCCCchhHHHHHHHHH-Hhc--C-CCEEEECCC-EeEECCeEEc----CC-CCEEEecccceEecC-C
Confidence            4689999999999999999999999996 443  3 789999999 99994 8999    46 89998774  66542 2


Q ss_pred             CCCcCC-CCCcceEEE---eCccceEEEeceEEe
Q 047411          101 PNEWKE-DDKSKWFDI---QSVDSLQIDGSGTID  130 (226)
Q Consensus       101 ~~~~~~-~~~~~~i~~---~~~~nv~I~G~G~id  130 (226)
                       ..|.. .+.++.+.+   .....+.|+|- .++
T Consensus       467 -~~F~d~~~P~pvv~VG~~gd~G~veisdl-~~~  498 (758)
T 3eqn_A          467 -SKFTDYNNPQPVIQVGAPGSSGVVEITDM-IFT  498 (758)
T ss_dssp             -GGGCCTTSCEEEEEESCTTCBSCEEEESC-EEE
T ss_pred             -ccccCCCCCeeeEEeCCCCCCCeEEEEeE-EEE
Confidence             33443 245678887   33457788773 444

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=98.97  E-value=4.4e-09  Score=95.47  Aligned_cols=152  Identities=11%  Similarity=0.055  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCC-CcCccEEEEEe--e--EEEeeCCCCCcCCCCCcceEEEeC
Q 047411           43 SMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGP-CKSSDITIMLS--G--SIIAPNGPNEWKEDDKSKWFDIQS  117 (226)
Q Consensus        43 t~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~-~ks~~v~l~~~--g--~l~~~~~~~~~~~~~~~~~i~~~~  117 (226)
                      .+.||+|++ ++++   |.+|+|++| +|.-..+.+.+. ...++++|..+  +  +|..            ...|.+.+
T Consensus        31 ~~~Lq~Ai~-~A~p---GDtI~L~~G-tY~~~~i~i~~sGt~~~pItl~~~~~~~~vi~G------------~~~l~i~g   93 (506)
T 1dbg_A           31 NETLYQVVK-EVKP---GGLVQIADG-TYKDVQLIVSNSGKSGLPITIKALNPGKVFFTG------------DAKVELRG   93 (506)
T ss_dssp             HHHHHHHHH-HCCT---TCEEEECSE-EEETCEEEECCCCBTTBCEEEEESSTTSEEEEE------------SCEEEECS
T ss_pred             HHHHHHHHH-hCCC---CCEEEECCC-EEecceEEEecCCcCCCCEEEECCCCCccEEeC------------CceEEEEc
Confidence            457999995 5665   889999999 997546666210 00126777653  1  2221            12355543


Q ss_pred             ccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCce-EEEEe--------CeeeE
Q 047411          118 VDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQT-HVTVM--------GCIGV  188 (226)
Q Consensus       118 ~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~-~i~~~--------~s~~v  188 (226)
                       ++++|+|. +|.+.+..... .       .  ...+..+.+. .++++|++++|.+...- .+.+.        .+++.
T Consensus        94 -~~v~i~GL-~i~~~~~~~~~-~-------~--~~~~~~iav~-G~~~~I~nn~I~~~~~gd~i~i~~~~~~~~l~g~~n  160 (506)
T 1dbg_A           94 -EHLILEGI-WFKDGNRAIQA-W-------K--SHGPGLVAIY-GSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHC  160 (506)
T ss_dssp             -SSEEEESC-EEEEECCCTTT-C-------C--TTSCCSEEEC-SSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSC
T ss_pred             -CCEEEECe-EEECCCcceee-e-------e--cccccceEEe-cCCeEEEeeEEEcCCCCceeeEeecccceeeecccc
Confidence             67777773 55544321100 0       0  0113345554 58899999999987331 02222        56677


Q ss_pred             EEEeEEEECCCCCCCCC----eEEecC-------eecEEEEeeEEec
Q 047411          189 EFGFLSIQAPGTSPNTD----GIHIQA-------SSNVYIHNAHISN  224 (226)
Q Consensus       189 ~i~~~~i~~~~~~~ntD----Gi~~~~-------s~~v~I~n~~i~~  224 (226)
                      +|++++|.+........    ||+++.       +.+..|++++|..
T Consensus       161 ~I~~N~I~Gk~~~G~~i~gnngI~l~~~~~~~~~~~~~~I~nN~f~~  207 (506)
T 1dbg_A          161 RIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSN  207 (506)
T ss_dssp             EEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCCCCEEESCEEEE
T ss_pred             EEECcEEECCcCcceEEecCceeEeccCcccccccCCeEEeCcEEcc
Confidence            99999999854433343    888886       3689999999874

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=98.68  E-value=1e-07  Score=87.71  Aligned_cols=133  Identities=11%  Similarity=0.095  Sum_probs=88.0

Q ss_pred             CCE-EEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCC------CCcCCC-CCcceEEEe------CccceEEEe
Q 047411           60 SPT-MVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGP------NEWKED-DKSKWFDIQ------SVDSLQIDG  125 (226)
Q Consensus        60 g~~-v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~------~~~~~~-~~~~~i~~~------~~~nv~I~G  125 (226)
                      +.+ |++++| .++.+.+.+.+.  . +++|...|+|......      ..|+.. .....+.+.      +++||+|+|
T Consensus       264 nvt~L~L~~G-A~l~g~i~~~~~--~-nv~ItG~GtIDG~G~~ww~~~~~~~~~~~~rp~~i~~~~~~~~~~c~NV~I~G  339 (574)
T 1ogo_X          264 NTYWVYLAPG-AYVKGAIEYFTK--Q-NFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVG  339 (574)
T ss_dssp             TCCEEEECTT-EEEESCEEECCS--S-CEEEESSCEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEECSCCSSEEEEEES
T ss_pred             CCceEEecCC-cEEEccEEEeCc--e-eEEEEeCEEEeCCCcccccccccccccccCCcceEEEEeccccCCceeEEEEC
Confidence            456 888999 888888888652  3 8888877898653210      111110 011233333      789999999


Q ss_pred             ceEEeCCCcccccccccccccCCcccCCceEEEEeecCcE--EEeeeEEeCCCce---EEEEeCeeeEEEEeEEEECCCC
Q 047411          126 SGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNL--RMNNMNFINSPQT---HVTVMGCIGVEFGFLSIQAPGT  200 (226)
Q Consensus       126 ~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv--~i~~i~i~ns~~~---~i~~~~s~~v~i~~~~i~~~~~  200 (226)
                      -.+.+.   ..|.                  +.+..|+++  +|+++++.+++.|   ++++.  +||+|+|++|.+   
T Consensus       340 iti~NS---p~w~------------------i~~~~c~nV~~~I~nv~i~~~~~~nTDGIDi~--~NV~I~nc~I~~---  393 (574)
T 1ogo_X          340 PTINAP---PFNT------------------MDFNGNSGISSQISDYKQVGAFFFQTDGPEIY--PNSVVHDVFWHV---  393 (574)
T ss_dssp             CEEECC---SSCS------------------EEECSSSCEEEEEEEEEEECCCSTTCCCCBCC--TTCEEEEEEEEE---
T ss_pred             eEEECC---CCcE------------------EeecCCCChhhEEEeeEeeCCCCCCCccCccc--CCEEEEeeEEEC---
Confidence            655542   2332                  667788888  8888888876665   45555  788888888886   


Q ss_pred             CCCCCeEEecCeecEEEEeeEEecC
Q 047411          201 SPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       201 ~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                        ..|.|-+-+ +||+|+||.+.+|
T Consensus       394 --gDDcIaIks-~NI~I~nc~i~~g  415 (574)
T 1ogo_X          394 --NDDAIKIYY-SGASVSRATIWKC  415 (574)
T ss_dssp             --SSCSEECCS-TTCEEEEEEEEEC
T ss_pred             --CCCEEEECC-ccEEEEeEEEECC
Confidence              357776655 7777777777653

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=98.64  E-value=2.3e-07  Score=80.86  Aligned_cols=63  Identities=14%  Similarity=0.222  Sum_probs=47.4

Q ss_pred             EEEEeecCcEEEeeeEEeCCCc--------------------eEEEEe-CeeeEEEEeEEEECCCCCCCCCeEEecCeec
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQ--------------------THVTVM-GCIGVEFGFLSIQAPGTSPNTDGIHIQASSN  214 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~--------------------~~i~~~-~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~  214 (226)
                      .+.+ .+++++++||+|+|+..                    -.+.+. .+++..+.+|++...     -|.+-.....+
T Consensus       116 Tv~V-~a~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G~-----QDTLy~~~~gr  189 (364)
T 3uw0_A          116 TVLV-NAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGY-----QDTLYSKTGSR  189 (364)
T ss_dssp             SEEE-CSTTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEECS-----BSCEEECTTCE
T ss_pred             EEEE-ECCCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEec-----ccceEeCCCCC
Confidence            4555 48999999999999842                    234444 589999999999984     47777764467


Q ss_pred             EEEEeeEEec
Q 047411          215 VYIHNAHISN  224 (226)
Q Consensus       215 v~I~n~~i~~  224 (226)
                      ..+++|+|+.
T Consensus       190 ~yf~~c~I~G  199 (364)
T 3uw0_A          190 SYFSDCEISG  199 (364)
T ss_dssp             EEEESCEEEE
T ss_pred             EEEEcCEEEc
Confidence            7888888873

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=98.61  E-value=2.5e-07  Score=80.11  Aligned_cols=113  Identities=19%  Similarity=0.277  Sum_probs=83.8

Q ss_pred             cEEEEEe--eEEEeeCCCCCcCCC-----CCc-ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEE
Q 047411           86 DITIMLS--GSIIAPNGPNEWKED-----DKS-KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVL  157 (226)
Q Consensus        86 ~v~l~~~--g~l~~~~~~~~~~~~-----~~~-~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i  157 (226)
                      +++|...  |+|..... .-|...     ..+ .++.+.+++|++|+|--+.+..   .                  ..+
T Consensus        69 nv~I~G~~gG~IdG~G~-~~w~~~~~~~~~~rp~~i~~~~~~nv~i~giti~nsp---~------------------~~i  126 (339)
T 2iq7_A           69 NININGASGHSIDCQGS-RWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTP---V------------------QAF  126 (339)
T ss_dssp             SCEEEECTTCEEECCGG-GTCCSCGGGSSSCCCCCEEEEEEEEEEEECCEEECCS---S------------------CCE
T ss_pred             cEEEEcCCCCEEECCcc-cccccccccCCCCCCeEEEEeeeCcEEEEEEEEEeCC---c------------------ceE
Confidence            8888886  68764321 223210     112 3788888999999994222211   1                  248


Q ss_pred             EEeecCcEEEeeeEEeCCCc--------eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          158 KFDRCNNLRMNNMNFINSPQ--------THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       158 ~~~~~~nv~i~~i~i~ns~~--------~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      .+..|+|++|+++++.+++.        -++++..|+||+|+|++|.+     ..|+|.+.+++||+|+||++..|
T Consensus       127 ~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~-----gDDciaiksg~nI~i~n~~~~~g  197 (339)
T 2iq7_A          127 SINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKN-----QDDCLAINSGTNITFTGGTCSGG  197 (339)
T ss_dssp             EEESCEEEEEESCEEECGGGGGTTCCSCCSEEEESCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESS
T ss_pred             EEeccCCEEEEEEEEECCccccccCCCCCcEEEcCcceEEEEecEEec-----CCCEEEEcCCccEEEEeEEEECC
Confidence            89999999999999998642        25899999999999999986     46899999899999999998876

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=98.56  E-value=7.4e-07  Score=77.45  Aligned_cols=113  Identities=15%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             cEEEEEe--eEEEeeCCCCCcCC--CC----Ccc-eEEE-e-CccceEEEeceEEeCCCcccccccccccccCCcccCCc
Q 047411           86 DITIMLS--GSIIAPNGPNEWKE--DD----KSK-WFDI-Q-SVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAP  154 (226)
Q Consensus        86 ~v~l~~~--g~l~~~~~~~~~~~--~~----~~~-~i~~-~-~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp  154 (226)
                      +++|..+  |+|..... .-|..  .+    .+| +|.+ . ..+|++|+|- +|...                    ..
T Consensus        70 ni~I~G~~~G~IdG~G~-~ww~~~~~~~~~~~rP~~i~~~~~~~~nv~I~gi-ti~ns--------------------p~  127 (349)
T 1hg8_A           70 NITITGASGHVIDGNGQ-AYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNL-NIQNW--------------------PV  127 (349)
T ss_dssp             SCEEEECTTCEEECCGG-GTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESC-EEECC--------------------SS
T ss_pred             cEEEEecCCCEEcCCcc-hhhhcccccCCCCCCCeEEEEeecCcCcEEEEEE-EEEcC--------------------CC
Confidence            8888883  78765321 22331  01    244 7778 6 6679999984 22211                    11


Q ss_pred             eEEEEeecCcEEEeeeEEeCCCc----------------eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEE
Q 047411          155 TVLKFDRCNNLRMNNMNFINSPQ----------------THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIH  218 (226)
Q Consensus       155 ~~i~~~~~~nv~i~~i~i~ns~~----------------~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~  218 (226)
                      ..+.+.+|++++|+++++.+++.                -++++..|+||+|+|++|.+     ..|+|.+.+++||+|+
T Consensus       128 ~~i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~  202 (349)
T 1hg8_A          128 HCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYN-----QDDCVAVTSGTNIVVS  202 (349)
T ss_dssp             EEEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEEC-----SSCSEEESSEEEEEEE
T ss_pred             ceEEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEccccEEEEEeeEEec-----CCCeEEeeCCeEEEEE
Confidence            35889999999999999998642                25899999999999999986     4699999999999999


Q ss_pred             eeEEecC
Q 047411          219 NAHISNG  225 (226)
Q Consensus       219 n~~i~~g  225 (226)
                      ||++..|
T Consensus       203 n~~~~~g  209 (349)
T 1hg8_A          203 NMYCSGG  209 (349)
T ss_dssp             EEEEESS
T ss_pred             eEEEeCC
Confidence            9999876

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.56  E-value=6.3e-07  Score=78.61  Aligned_cols=114  Identities=12%  Similarity=0.261  Sum_probs=82.8

Q ss_pred             cEEEEEeeEEEeeCC-------CCCcCC----------CCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCC
Q 047411           86 DITIMLSGSIIAPNG-------PNEWKE----------DDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEG  148 (226)
Q Consensus        86 ~v~l~~~g~l~~~~~-------~~~~~~----------~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~  148 (226)
                      +++|...|+|.....       ..-|..          .....+|.+.+++|++|+|- +|...  ..|           
T Consensus       110 ni~I~G~G~IdG~G~~~~~~~~~~ww~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i-ti~ns--p~~-----------  175 (376)
T 1bhe_A          110 NSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNV-SLINS--PNF-----------  175 (376)
T ss_dssp             SCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCEEEEEEEE-EEECC--SSC-----------
T ss_pred             eEEEEeCEEEECCCCcccCCCccccccccccccccCccCCCCeEEEEEcceEEEEEeE-EEECC--CcE-----------
Confidence            888887788876432       122321          01134889999999999983 33211  112           


Q ss_pred             cccCCceEEEEeecCcEEEeeeEEeCCC----ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec------CeecEEEE
Q 047411          149 CVKLAPTVLKFDRCNNLRMNNMNFINSP----QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ------ASSNVYIH  218 (226)
Q Consensus       149 ~~~~rp~~i~~~~~~nv~i~~i~i~ns~----~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~------~s~~v~I~  218 (226)
                             .+.+..|++++|+++++.++.    .-++++..|++|+|+|++|.+     ..|+|-+.      .|+||+|+
T Consensus       176 -------~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~~s~nV~I~n~~i~~-----gDDcIaiks~~~~~~s~nI~I~  243 (376)
T 1bhe_A          176 -------HVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIAT-----GDDNVAIKAYKGRAETRNISIL  243 (376)
T ss_dssp             -------SEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEEC-----SSCSEEEEECTTSCCEEEEEEE
T ss_pred             -------EEEEeCCCcEEEEeEEEECCCCCCCCceEeecCCceEEEEeCEEec-----CCCeEEEcccCCCCCceEEEEE
Confidence                   377888999999999999853    236899999999999999986     45888887      59999999


Q ss_pred             eeEEecC
Q 047411          219 NAHISNG  225 (226)
Q Consensus       219 n~~i~~g  225 (226)
                      ||++..|
T Consensus       244 n~~~~~g  250 (376)
T 1bhe_A          244 HNDFGTG  250 (376)
T ss_dssp             EEEECSS
T ss_pred             eeEEEcc
Confidence            9998764

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=98.53  E-value=2.7e-06  Score=75.18  Aligned_cols=168  Identities=15%  Similarity=0.133  Sum_probs=92.9

Q ss_pred             ccccceEEeeecCcc-CCCCcchHH-HHHHHHHHhcccCCCCCEEEecCCCeEE--E-----eeeeeeCCCcC----ccE
Q 047411           21 RINADEFNVLDFGAA-GDGNADDSM-AFIKAWNNTCSATAKSPTMVIPKGKTFL--V-----HPITFTGPCKS----SDI   87 (226)
Q Consensus        21 ~~~~~~~~v~dyGA~-~dg~~ddt~-aiq~Ai~~a~~~~g~g~~v~iP~G~tY~--~-----~~l~l~~~~ks----~~v   87 (226)
                      .+.+.++.|..-|-. ++|.+-.+| .||+|++ ++++   |.+|+|.+| +|.  +     ..+.+.   |+    ..+
T Consensus        11 ~~~~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~-~a~p---GdtI~l~~G-tY~~~~~e~~~~~i~~~---~sGt~~~pI   82 (400)
T 1ru4_A           11 ISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMA-AVNP---GELILLKPG-TYTIPYTQGKGNTITFN---KSGKDGAPI   82 (400)
T ss_dssp             CCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHH-HCCT---TCEEEECSE-EEECCCBTTBCCCEEEC---CCCBTTBCE
T ss_pred             ccCccEEEEcCCCCCCCCCccccCCccHHHHHh-hCCC---CCEEEECCC-eEccccccccceeEEec---CCCCCCCCE
Confidence            456778888765532 233122222 7999995 5555   889999999 998  2     345553   22    147


Q ss_pred             EEEEee----EEEeeCCC-CCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeec
Q 047411           88 TIMLSG----SIIAPNGP-NEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRC  162 (226)
Q Consensus        88 ~l~~~g----~l~~~~~~-~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~  162 (226)
                      +|+-.+    +|. .... ..|..  ....|.+. .++++|+|. +|...|.                    ..|.+.. 
T Consensus        83 ti~~~~g~~~vI~-~~~~~g~~~~--~~~~i~i~-~~~~~i~gl-~I~n~g~--------------------~GI~v~g-  136 (400)
T 1ru4_A           83 YVAAANCGRAVFD-FSFPDSQWVQ--ASYGFYVT-GDYWYFKGV-EVTRAGY--------------------QGAYVIG-  136 (400)
T ss_dssp             EEEEGGGCCEEEE-CCCCTTCCCT--TCCSEEEC-SSCEEEESE-EEESCSS--------------------CSEEECS-
T ss_pred             EEEEecCCCCEEe-CCccCCcccc--ceeEEEEE-CCeEEEEeE-EEEeCCC--------------------CcEEEeC-
Confidence            776641    333 1110 01100  01335553 467777772 4432221                    1355554 


Q ss_pred             CcEEEeeeEEeCCCceEEEEeCee-eEEEEeEEEECCCC----CCCCCeEEecCe--ecEEEEeeEE
Q 047411          163 NNLRMNNMNFINSPQTHVTVMGCI-GVEFGFLSIQAPGT----SPNTDGIHIQAS--SNVYIHNAHI  222 (226)
Q Consensus       163 ~nv~i~~i~i~ns~~~~i~~~~s~-~v~i~~~~i~~~~~----~~ntDGi~~~~s--~~v~I~n~~i  222 (226)
                      .+.+|+++++.+...-++.+.... +.+|+++++....+    ..+.|||.+..+  +...|++|.+
T Consensus       137 s~~~i~n~~i~~n~~~GI~l~~~~s~n~I~nn~i~~N~d~~~~g~~~dG~~~~~~~g~Gn~~~~~~~  203 (400)
T 1ru4_A          137 SHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRA  203 (400)
T ss_dssp             SSCEEESCEEESCSSCSEEECTTCCSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEE
T ss_pred             CCcEEEeEEEECCCceeEEEEcccCCeEEEceEEEcccCccccCcccceEEEEecccCCeEEECCEE
Confidence            667788888887766567776543 66777777776432    134566655432  3444444443

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.51  E-value=6.9e-07  Score=77.34  Aligned_cols=113  Identities=19%  Similarity=0.283  Sum_probs=82.9

Q ss_pred             cEEEEEe--eEEEeeCCCCCcCCC-----CCc-ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEE
Q 047411           86 DITIMLS--GSIIAPNGPNEWKED-----DKS-KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVL  157 (226)
Q Consensus        86 ~v~l~~~--g~l~~~~~~~~~~~~-----~~~-~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i  157 (226)
                      +++|...  |+|..... .-|...     ..+ .++.+.+++|++|+|- +|....  .                  ..+
T Consensus        73 nv~I~G~~gG~IdG~G~-~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i-~i~nsp--~------------------~~i  130 (339)
T 1ia5_A           73 DLTITGASGHSINGDGS-RWWDGEGGNGGKTKPKFFAAHSLTNSVISGL-KIVNSP--V------------------QVF  130 (339)
T ss_dssp             SCEEEECTTCEEECCGG-GTCSSCTTTSSSCCCCCEEEEEEEEEEEESC-EEECCS--S------------------CCE
T ss_pred             cEEEEcCCCeEEeCCCC-ccccccccCCCCCCCeEEEEeecCcEEEEEE-EEEcCC--c------------------ceE
Confidence            8888876  57764321 223311     112 3788888999999984 332111  1                  248


Q ss_pred             EEeecCcEEEeeeEEeCCC--------ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          158 KFDRCNNLRMNNMNFINSP--------QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       158 ~~~~~~nv~i~~i~i~ns~--------~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      .+..|+|++|+++++.+++        .-++++..|++|+|+|++|.+     ..|+|.+.+++||+|+||++..|
T Consensus       131 ~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~n~~~~~g  201 (339)
T 1ia5_A          131 SVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYN-----QDDCVAVNSGENIYFSGGYCSGG  201 (339)
T ss_dssp             EEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESS
T ss_pred             EEecccCeEEeeEEEECCccccccCCCCCcEEecCCceEEEEeeEEEc-----CCCeEEEeCCeEEEEEeEEEECC
Confidence            8899999999999999853        235899999999999999986     46899998889999999998865

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.46  E-value=1.2e-06  Score=75.77  Aligned_cols=112  Identities=18%  Similarity=0.329  Sum_probs=82.7

Q ss_pred             cEEEEEe--eEEEeeCCCCCcCCC-----CCc-ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEE
Q 047411           86 DITIMLS--GSIIAPNGPNEWKED-----DKS-KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVL  157 (226)
Q Consensus        86 ~v~l~~~--g~l~~~~~~~~~~~~-----~~~-~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i  157 (226)
                      +++|...  |+|..... ..|...     ..+ .++.+.+++|++|+|- +|...  ..                  ..+
T Consensus        69 nv~I~G~~gG~IdG~G~-~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i-~i~ns--p~------------------~~i  126 (336)
T 1nhc_A           69 DLTVTMADGAVIDGDGS-RWWDSKGTNGGKTKPKFMYIHDVEDSTFKGI-NIKNT--PV------------------QAI  126 (336)
T ss_dssp             SCEEEECTTCEEECCGG-GTCCSCTTTSSSCCCCCEEEEEEEEEEEESC-EEECC--SS------------------CCE
T ss_pred             CEEEEcCCCeEEECCcc-ccccccCcCCCCCCceEEEEeeeCcEEEEEE-EEEeC--Cc------------------cEE
Confidence            8888886  68865321 223311     112 3788888999999984 33211  11                  138


Q ss_pred             EEeecCcEEEeeeEEeCCC--------ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          158 KFDRCNNLRMNNMNFINSP--------QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       158 ~~~~~~nv~i~~i~i~ns~--------~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      .+. |+|++|+++++.+++        .-++++..|+||+|+|++|.+     ..|+|.+.+++||+|+||++..|
T Consensus       127 ~i~-~~nv~i~~~~I~~~~~d~~~~~ntDGidi~~s~nV~I~n~~i~~-----gDDciaiksg~nI~i~n~~~~~g  196 (336)
T 1nhc_A          127 SVQ-ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKN-----QDDCIAINSGESISFTGGTCSGG  196 (336)
T ss_dssp             EEE-EEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEES-----SSEEEEESSEEEEEEESCEEESS
T ss_pred             EEE-eCCEEEEEEEEECCCcccccCCCCCcEEecCCCeEEEEeCEEEc-----CCCEEEEeCCeEEEEEeEEEECC
Confidence            888 999999999999864        235899999999999999986     46899998889999999998865

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=98.41  E-value=6.7e-07  Score=80.15  Aligned_cols=92  Identities=11%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC--ceEEEEeCeeeE
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP--QTHVTVMGCIGV  188 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~--~~~i~~~~s~~v  188 (226)
                      .+|.+.+++|++|+|--..+.   ..|                  .+.+..|+|++|+++++.++.  .-++++..|+||
T Consensus       191 ~~i~~~~~~nv~i~giti~ns---p~~------------------~i~~~~~~nv~i~~v~I~~~~~NtDGidi~~s~nV  249 (448)
T 3jur_A          191 SFVQFYRCRNVLVEGVKIINS---PMW------------------CIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYM  249 (448)
T ss_dssp             CSEEEESCEEEEEESCEEESC---SSC------------------SEEEESCEEEEEESCEEEECSTTCCSBCCBSCEEE
T ss_pred             eEEEEEcccceEEEeeEEEeC---CCc------------------eEeeeccCCEEEEeEEEeeccCCCccccccCCcCE
Confidence            389999999999999432221   122                  388889999999999999852  235888999999


Q ss_pred             EEEeEEEECCCC------CCCCCeEEecC-eecEEEEeeEEe
Q 047411          189 EFGFLSIQAPGT------SPNTDGIHIQA-SSNVYIHNAHIS  223 (226)
Q Consensus       189 ~i~~~~i~~~~~------~~ntDGi~~~~-s~~v~I~n~~i~  223 (226)
                      +|+|++|.+..+      ..+.||+++.. |+||+|+||++.
T Consensus       250 ~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~  291 (448)
T 3jur_A          250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVI  291 (448)
T ss_dssp             EEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEE
T ss_pred             EEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEe
Confidence            999999987321      12234444332 899999999983

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=98.40  E-value=1.5e-06  Score=79.69  Aligned_cols=132  Identities=12%  Similarity=0.213  Sum_probs=73.7

Q ss_pred             CCE-EEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCC------CCcCC--CCCcceEEE------eCccceEEE
Q 047411           60 SPT-MVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGP------NEWKE--DDKSKWFDI------QSVDSLQID  124 (226)
Q Consensus        60 g~~-v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~------~~~~~--~~~~~~i~~------~~~~nv~I~  124 (226)
                      +.+ +++++| .|+.+++.+...+ . +++|...|+|.+....      ..|..  ......+.+      .+++|++|+
T Consensus       222 ~~~~L~l~~G-A~L~gs~~~~~~~-~-nv~ItG~GtIDG~G~~ww~~~~~~~~~~~~~rp~~i~~~~~~~~~~c~nV~I~  298 (549)
T 1x0c_A          222 SVTWVYFAPG-AYVKGAVEFLSTA-S-EVKASGHGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLN  298 (549)
T ss_dssp             TCCEEEECTT-EEEESCEEECCCS-S-EEEEESSCEEECTTSCTTEEGGGTTEECGGGCSCCCCSEEEECCSSCEEEEEE
T ss_pred             CCCeEecCCC-CEEEEEEEEecCc-e-eEEEEeeEEEECCCceecccCcccccccccCCCceEEEeeccccCCceEEEEE
Confidence            567 999999 8988888776322 3 8898777898764321      11210  000112333      788999999


Q ss_pred             eceEEeCCCcccccccccccccCCcccCCceEEEEe-ec-Cc--EEEeeeEEeCCCce---EEEEeCeeeEEEEeEEEEC
Q 047411          125 GSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFD-RC-NN--LRMNNMNFINSPQT---HVTVMGCIGVEFGFLSIQA  197 (226)
Q Consensus       125 G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~-~~-~n--v~i~~i~i~ns~~~---~i~~~~s~~v~i~~~~i~~  197 (226)
                      |-.+.+.   .+|.                  +.+. .| ++  ++|+++++.+++.|   ++.+.  +||+|+|++|.+
T Consensus       299 Giti~Ns---p~w~------------------i~i~~~~~~ni~V~I~n~~i~~~~~~NTDGidi~--~nV~I~n~~i~~  355 (549)
T 1x0c_A          299 GVTVSAP---PFNS------------------MDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMY--PGTILQDVFYHT  355 (549)
T ss_dssp             SCEEECC---SSCS------------------EEEECSCGGGEEEEEEEEEEECCCBTTCCCCBCC--TTCEEEEEEEEE
T ss_pred             CcEEECC---Ccee------------------EEeeccCCCCCeEEEEeeEeEcCCCCCCCccccc--CCEEEEeeEEeC
Confidence            9644432   2332                  3322 23 46  66666666654433   23333  556666666654


Q ss_pred             CCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          198 PGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       198 ~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                           ..|+|-+.+ +||+|+||.+.
T Consensus       356 -----gDDcIaIks-~NI~I~n~~~~  375 (549)
T 1x0c_A          356 -----DDDGLKMYY-SNVTARNIVMW  375 (549)
T ss_dssp             -----SSCCEECCS-SSEEEEEEEEE
T ss_pred             -----CCCEEEECC-CCEEEEeeEEE
Confidence                 234555544 55555555554

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=98.37  E-value=7.1e-07  Score=82.93  Aligned_cols=95  Identities=8%  Similarity=0.056  Sum_probs=73.4

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeC--CC-ceEEEEeCeee
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFIN--SP-QTHVTVMGCIG  187 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~n--s~-~~~i~~~~s~~  187 (226)
                      .+|.+.+++|++|+|--..+.   ..|                  .+.+.+|+|++|+++++.+  +| .-++++..|++
T Consensus       332 ~~i~~~~~~nv~I~giti~ns---~~~------------------~i~~~~~~nv~i~~v~i~~~~~~NtDGidi~~s~n  390 (608)
T 2uvf_A          332 SLMTLRGVENVYLAGFTVRNP---AFH------------------GIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQN  390 (608)
T ss_dssp             CSEEEESEEEEEEESCEEECC---SSC------------------SEEEESCEEEEEESCEEECTTCTTCCSEEEESCEE
T ss_pred             eEEEEEeeeeEEEeCcEEecC---CCC------------------EEEEecCCCEEEeeEEEcCCCCCCCCeEEecCCce
Confidence            479999999999999422221   122                  4888999999999999876  22 34799999999


Q ss_pred             EEEEeEEEECCCC------CCCCCeEEecCeecEEEEeeEEecCC
Q 047411          188 VEFGFLSIQAPGT------SPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       188 v~i~~~~i~~~~~------~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      |+|+|++|.+..+      ..+.||++...|+||+|+||++..|+
T Consensus       391 V~I~n~~i~~gDD~Iaiksg~~~~g~~~~~s~nI~I~n~~~~~gh  435 (608)
T 2uvf_A          391 VMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGH  435 (608)
T ss_dssp             EEEESCEEECSSCSEEEECCCSGGGGGSCCEEEEEEESCEECSSS
T ss_pred             EEEEeeEEecCCceEEecCCcCccccccccccCEEEEeEEEeCCC
Confidence            9999999997533      24567777667999999999998764

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.32  E-value=1.9e-06  Score=75.14  Aligned_cols=112  Identities=18%  Similarity=0.308  Sum_probs=82.3

Q ss_pred             cEEEEE--eeEEEeeCCCCCcCCC----CC-cceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEE
Q 047411           86 DITIML--SGSIIAPNGPNEWKED----DK-SKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLK  158 (226)
Q Consensus        86 ~v~l~~--~g~l~~~~~~~~~~~~----~~-~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~  158 (226)
                      +++|..  .|+|..... .-|...    .. ..++.+.+++|++|+|- ++...  ..|                  .+.
T Consensus        96 nv~I~G~~~g~IdG~G~-~~w~~~~~~~~~rP~~i~~~~~~nv~i~~i-ti~ns--p~~------------------~i~  153 (362)
T 1czf_A           96 HITVTGASGHLINCDGA-RWWDGKGTSGKKKPKFFYAHGLDSSSITGL-NIKNT--PLM------------------AFS  153 (362)
T ss_dssp             SCEEEECTTCEEECCGG-GTCCSCTTSSSCCCCCEEEEEEETEEEESC-EEECC--SSC------------------CEE
T ss_pred             cEEEEcCCCcEEECCCc-hhhcccCCCCCCCCeEEEEeecccEEEEEE-EEecC--Ccc------------------EEE
Confidence            888888  377764321 223311    11 23788888999999983 33211  111                  388


Q ss_pred             EeecCcEEEeeeEEeCCC--------ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          159 FDRCNNLRMNNMNFINSP--------QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       159 ~~~~~nv~i~~i~i~ns~--------~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      +. |+|++|+++++.+++        .-++++..|+||+|+|++|.+     ..|+|-+.+++||+|+||++..|
T Consensus       154 i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~n~~~~~g  222 (362)
T 1czf_A          154 VQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHN-----QDDCLAVNSGENIWFTGGTCIGG  222 (362)
T ss_dssp             EE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESS
T ss_pred             Ee-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEec-----CCCEEEEeCCeEEEEEEEEEeCC
Confidence            88 999999999999853        235899999999999999997     46899998889999999998765

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=98.28  E-value=3.6e-06  Score=72.05  Aligned_cols=147  Identities=12%  Similarity=0.107  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHhcccCCCCC----EEEecCCCeEEEeeeeeeCCCcCccEEEEEee----EEEeeCCCC-CcCCCCCcce
Q 047411           42 DSMAFIKAWNNTCSATAKSP----TMVIPKGKTFLVHPITFTGPCKSSDITIMLSG----SIIAPNGPN-EWKEDDKSKW  112 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~g~----~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g----~l~~~~~~~-~~~~~~~~~~  112 (226)
                      +-..||+||+ +++.   +.    +|+|++| +|. ..+.++.. |. +++|+.++    +|....... .+. ....+.
T Consensus        14 ~f~TIq~AI~-aap~---~~~~~~~I~I~~G-~Y~-E~V~I~~~-k~-~Itl~G~g~~~tiI~~~~~~~~g~~-t~~sat   84 (317)
T 1xg2_A           14 DYQTLAEAVA-AAPD---KSKTRYVIYVKRG-TYK-ENVEVASN-KM-NLMIVGDGMYATTITGSLNVVDGST-TFRSAT   84 (317)
T ss_dssp             SBSSHHHHHH-HSCS---SCSSCEEEEECSE-EEE-CCEEECTT-SC-SEEEEESCTTTEEEEECCCTTTTCC-SGGGCS
T ss_pred             CcccHHHHHh-hccc---CCCceEEEEEcCC-EEe-eeeecCCC-CC-cEEEEEcCCCCcEEEecccccCCCc-ccceeE
Confidence            3345999995 5554   33    8999999 996 35555311 33 68887764    233221110 000 001234


Q ss_pred             EEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEe
Q 047411          113 FDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGF  192 (226)
Q Consensus       113 i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~  192 (226)
                      +.+. .++|++++- +|...+..     .         .....+|.+ .++++.++++.|... +.++.....+. .+++
T Consensus        85 v~v~-a~~f~~~~l-t~~Nt~g~-----~---------~~qAvAl~v-~~d~~~f~~c~f~g~-QDTLy~~~~r~-~~~~  145 (317)
T 1xg2_A           85 LAAV-GQGFILQDI-CIQNTAGP-----A---------KDQAVALRV-GADMSVINRCRIDAY-QDTLYAHSQRQ-FYRD  145 (317)
T ss_dssp             EEEC-STTCEEESC-EEEECCCG-----G---------GCCCCSEEE-CCTTEEEESCEEECS-TTCEEECSSEE-EEES
T ss_pred             EEEE-CCCEEEEEe-EEecccCC-----c---------cCceEEEEE-eCCcEEEEEeEeCcc-ccceeecCccE-EEEe
Confidence            4443 355555552 23221100     0         111224444 366667777777665 44555544433 6677


Q ss_pred             EEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          193 LSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       193 ~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      |.|..     +.|-|-  +.-...+++|.|.
T Consensus       146 c~I~G-----~vDFIf--G~~~avf~~c~i~  169 (317)
T 1xg2_A          146 SYVTG-----TVDFIF--GNAAVVFQKCQLV  169 (317)
T ss_dssp             CEEEE-----SSSCEE--ECCEEEEESCEEE
T ss_pred             eEEEe-----ceeEEc--CCceEEEeeeEEE
Confidence            77765     344433  1123666666665

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=98.28  E-value=7.8e-06  Score=70.03  Aligned_cols=147  Identities=15%  Similarity=0.107  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHhcccCCCCC----EEEecCCCeEEEeeeeeeCCCcCccEEEEEee---E-EEeeCCCC-CcCCCCCcce
Q 047411           42 DSMAFIKAWNNTCSATAKSP----TMVIPKGKTFLVHPITFTGPCKSSDITIMLSG---S-IIAPNGPN-EWKEDDKSKW  112 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~g~----~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g---~-l~~~~~~~-~~~~~~~~~~  112 (226)
                      +-..||+||+ +++.   +.    +|+|++| +|. ..+.++.. |. +++|+.++   + |....... .+. ....+.
T Consensus        18 ~f~TIq~AI~-aap~---~~~~~~~I~I~~G-~Y~-E~V~I~~~-k~-~Itl~G~g~~~tiI~~~~~~~~g~~-t~~sat   88 (319)
T 1gq8_A           18 DYKTVSEAVA-AAPE---DSKTRYVIRIKAG-VYR-ENVDVPKK-KK-NIMFLGDGRTSTIITASKNVQDGST-TFNSAT   88 (319)
T ss_dssp             SBSSHHHHHH-HSCS---SCSSCEEEEECSE-EEE-CCEEECTT-CC-SEEEEESCTTTEEEEECCCTTTTCC-TGGGCS
T ss_pred             CccCHHHHHH-hccc---cCCceEEEEEcCC-eEe-eeeeccCC-Cc-cEEEEEcCCCccEEEecccccCCCC-ccceEE
Confidence            3445999995 5554   33    8999999 996 35555311 33 67777663   2 32221110 000 001234


Q ss_pred             EEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEe
Q 047411          113 FDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGF  192 (226)
Q Consensus       113 i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~  192 (226)
                      +.+. .++|++++- +|...+..     .         .....+|.+ .++++.++++.|... +.++.....+ ..+++
T Consensus        89 v~v~-a~~f~~~nl-t~~Nt~g~-----~---------~~qAvAl~v-~~d~~~f~~c~f~g~-QDTLy~~~~r-~~~~~  149 (319)
T 1gq8_A           89 VAAV-GAGFLARDI-TFQNTAGA-----A---------KHQAVALRV-GSDLSAFYRCDILAY-QDSLYVHSNR-QFFIN  149 (319)
T ss_dssp             EEEC-STTCEEEEE-EEEECCCG-----G---------GCCCCSEEE-CCTTEEEEEEEEECS-TTCEEECSSE-EEEES
T ss_pred             EEEE-CCCEEEEEe-EeEccCCC-----c---------CCceEEEEe-cCCcEEEEEeEECcc-ceeeeecCcc-EEEEe
Confidence            4444 355555552 23221100     0         111223444 366666666666655 3355554443 36666


Q ss_pred             EEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          193 LSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       193 ~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      |.|..     +.|-|-=  .-...+++|.|.
T Consensus       150 c~I~G-----~vDFIfG--~~~a~f~~c~i~  173 (319)
T 1gq8_A          150 CFIAG-----TVDFIFG--NAAVVLQDCDIH  173 (319)
T ss_dssp             CEEEE-----SSSCEEE--SCEEEEESCEEE
T ss_pred             cEEEe-----eeeEEec--CCcEEEEeeEEE
Confidence            66665     3444431  123666666664

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.27  E-value=5.8e-06  Score=73.53  Aligned_cols=88  Identities=9%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCC---CceEEEEeCeee
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINS---PQTHVTVMGCIG  187 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns---~~~~i~~~~s~~  187 (226)
                      .++.+.+++|++|+|- +|...  ..|                  .+.+..|+|++|+|+++.+.   ..-++++.. +|
T Consensus       128 ~~i~~~~~~nv~I~~i-ti~ns--p~~------------------~i~i~~~~nv~I~n~~I~~~d~~ntDGidi~~-~n  185 (422)
T 1rmg_A          128 RILRLTDVTHFSVHDI-ILVDA--PAF------------------HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWG-SN  185 (422)
T ss_dssp             EEEEEEEEEEEEEEEE-EEECC--SSC------------------SEEEEEEEEEEEEEEEEECCSSTTCCSEEEEE-EE
T ss_pred             eEEEEcccceEEEECe-EEECC--Cce------------------EEEEeCcCCEEEEeEEEECCCCCCCccEeecC-Ce
Confidence            4788888999999984 33211  111                  38889999999999999972   234678887 99


Q ss_pred             EEEEeEEEECCCCCCCCCeEEecC-eecEEEEeeEEecC
Q 047411          188 VEFGFLSIQAPGTSPNTDGIHIQA-SSNVYIHNAHISNG  225 (226)
Q Consensus       188 v~i~~~~i~~~~~~~ntDGi~~~~-s~~v~I~n~~i~~g  225 (226)
                      |+|+|+.|.+     ..|+|-+.+ |+||+|+||++..|
T Consensus       186 V~I~n~~i~~-----gDD~Iai~s~~~nI~I~n~~~~~~  219 (422)
T 1rmg_A          186 IWVHDVEVTN-----KDECVTVKSPANNILVESIYCNWS  219 (422)
T ss_dssp             EEEEEEEEES-----SSEEEEEEEEEEEEEEEEEEEESS
T ss_pred             EEEEeeEEeC-----CCCeEEeCCCCcCEEEEeEEEcCC
Confidence            9999999986     458999987 89999999987654

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=98.20  E-value=3.2e-05  Score=67.15  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=37.7

Q ss_pred             EEEEeecCcEEEeeeEEeCC----Cce-----------EEEEeCeeeEEEEeEEEECCCC---------C---CCCCe-E
Q 047411          156 VLKFDRCNNLRMNNMNFINS----PQT-----------HVTVMGCIGVEFGFLSIQAPGT---------S---PNTDG-I  207 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns----~~~-----------~i~~~~s~~v~i~~~~i~~~~~---------~---~ntDG-i  207 (226)
                      .|.+.+++||.|++|+|++.    |.|           .+.+..+++|.|++|++....+         .   .-.|| +
T Consensus        97 gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~Dgl~  176 (355)
T 1pcl_A           97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL  176 (355)
T ss_pred             EEEEecCCeEEEeeeEEEcCcccccccccccCccccCceEEecCCCcEEEEeeEEeccccCccccccccCccccccccce
Confidence            35555666677777766643    111           4566666677777776664210         0   01344 3


Q ss_pred             Eec-CeecEEEEeeEEec
Q 047411          208 HIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       208 ~~~-~s~~v~I~n~~i~~  224 (226)
                      |+. .|++|+|.+|+|..
T Consensus       177 Di~~~s~~VTiS~n~f~~  194 (355)
T 1pcl_A          177 DIKKGSDYVTISYSRFEL  194 (355)
T ss_pred             eeecCCCcEEEEeeEEcC
Confidence            443 46666666666653

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=98.19  E-value=1.7e-05  Score=68.76  Aligned_cols=168  Identities=8%  Similarity=0.041  Sum_probs=94.5

Q ss_pred             ccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEe-cCCCeEEE-eeeeeeCCCcCccEEEEEee---EEEe
Q 047411           23 NADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVI-PKGKTFLV-HPITFTGPCKSSDITIMLSG---SIIA   97 (226)
Q Consensus        23 ~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~i-P~G~tY~~-~~l~l~~~~ks~~v~l~~~g---~l~~   97 (226)
                      .++++.|+..-..  ....-.-.|+.|+. +.   + ..+|+| ..| ++.+ ++|.+    .+ ++||...|   +|..
T Consensus        37 gG~v~~VT~~~d~--~~~~~~GsLr~av~-~~---~-P~~Ivf~~~g-~I~l~~~l~V----~s-n~TI~G~ga~~~i~G  103 (346)
T 1pxz_A           37 GGDFYTVTSTDDN--PVNPTPGTLRYGAT-RE---K-ALWIIFSQNM-NIKLKMPLYV----AG-HKTIDGRGADVHLGN  103 (346)
T ss_dssp             TSEEEEECCCCCC--TTSCCTTSHHHHHH-CS---S-CEEEEESSCE-EECCSSCEEC----CS-SEEEECTTSCEEEET
T ss_pred             CccEEEECChHHc--ccccCcchhHHHhc-cC---C-CeEEEEcCCc-EEecCccEEe----cC-CeEEEccCCceEEeC
Confidence            3567777743211  00001123888984 32   2 345555 557 7776 47776    36 88886542   2320


Q ss_pred             eCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCc----ccccccccccccCCcccCCceEEEEeecCcEEEeeeEEe
Q 047411           98 PNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGK----AWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFI  173 (226)
Q Consensus        98 ~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~----~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~  173 (226)
                                 ....|.+.+++||.|++.-+-+..-.    -|...........   ....-.|.+..++++.|+.++|.
T Consensus       104 -----------~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~---~~~~DaI~i~~s~nVwIDHcs~s  169 (346)
T 1pxz_A          104 -----------GGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVH---AQDGDAITMRNVTNAWIDHNSLS  169 (346)
T ss_dssp             -----------TSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEEC---CCCCCSEEEESCEEEEEESCEEE
T ss_pred             -----------CcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCccccccc---CCCCCEEEEecCceEEEEeeEEe
Confidence                       12356666788888888533222100    0011000000000   12334688888999999999999


Q ss_pred             CCCceEEEE-eCeeeEEEEeEEEECCCCCCCCCeEEecCe--------ecEEEEeeEE
Q 047411          174 NSPQTHVTV-MGCIGVEFGFLSIQAPGTSPNTDGIHIQAS--------SNVYIHNAHI  222 (226)
Q Consensus       174 ns~~~~i~~-~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s--------~~v~I~n~~i  222 (226)
                      +...-.+.+ ..+++|+|+++.+....     .|+.+.++        .+|+++++++
T Consensus       170 ~~~Dg~id~~~~s~~vTISnn~f~~H~-----k~~l~G~sd~~~~d~~~~vT~~~N~f  222 (346)
T 1pxz_A          170 DCSDGLIDVTLGSTGITISNNHFFNHH-----KVMLLGHDDTYDDDKSMKVTVAFNQF  222 (346)
T ss_dssp             CCSSEEEEEESSCEEEEEESCEEESEE-----EEEEESCCSSCGGGGGCEEEEESCEE
T ss_pred             cCCCCcEeeccCcceEEEEeeEEecCC-----ceeEECCCCccccCCceEEEEEeeEE
Confidence            886655556 58899999999998632     33433332        3788998888

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=98.19  E-value=4.2e-06  Score=72.29  Aligned_cols=111  Identities=12%  Similarity=0.089  Sum_probs=79.8

Q ss_pred             cEEEEEe-eEEEeeCCCCCcCCC-----CCc-ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEE
Q 047411           86 DITIMLS-GSIIAPNGPNEWKED-----DKS-KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLK  158 (226)
Q Consensus        86 ~v~l~~~-g~l~~~~~~~~~~~~-----~~~-~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~  158 (226)
                      +++|..+ |+|-.... .-|...     ..+ .++.+.+.+ ++|+|- ++.-.  ..|                  .+.
T Consensus        67 ni~I~G~~G~idG~G~-~ww~~~~~~~~~~rP~~i~~~~~~-v~i~gi-ti~ns--p~~------------------~i~  123 (335)
T 1k5c_A           67 GINFVGADHIFDGNGA-LYWDGKGTNNGTHKPHPFLKIKGS-GTYKKF-EVLNS--PAQ------------------AIS  123 (335)
T ss_dssp             EEEEECTTCEEECCGG-GTCCSCTTTSSSCCCCCSEEEEEE-EEEESC-EEESC--SSC------------------CEE
T ss_pred             CEEEEeCccEEcCChh-HhhhcccccCCCCCCeEEEEeceE-EEEEEE-EEECC--Ccc------------------eEE
Confidence            8888884 88865321 223211     112 367787777 999983 33211  112                  388


Q ss_pred             EeecCc-EEEeeeEEeCCCc---------eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          159 FDRCNN-LRMNNMNFINSPQ---------THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       159 ~~~~~n-v~i~~i~i~ns~~---------~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      +..|+| ++|+++++.+++.         -++++ .|+||+|+|+.|.+     ..|.|-+.+++||+|+||++..|
T Consensus       124 i~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi-~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~n~~~~~g  194 (335)
T 1k5c_A          124 VGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKN-----QDDCIAINDGNNIRFENNQCSGG  194 (335)
T ss_dssp             EEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEES-----SSCSEEEEEEEEEEEESCEEESS
T ss_pred             EEccCCeEEEEEEEEECCCCcccccCCCCCeEcc-cCCeEEEEeeEEEc-----CCCEEEeeCCeeEEEEEEEEECC
Confidence            999999 9999999998631         24888 99999999999997     46899998889999999998865

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=98.13  E-value=3.6e-05  Score=66.37  Aligned_cols=144  Identities=15%  Similarity=0.114  Sum_probs=88.1

Q ss_pred             HHHHHHHhcccCCCCCEEEecCCCeEEEe---eeeeeCCCcCccEEEEEeeE--EEeeCCCCCcCCCCCcceEEEeCccc
Q 047411           46 FIKAWNNTCSATAKSPTMVIPKGKTFLVH---PITFTGPCKSSDITIMLSGS--IIAPNGPNEWKEDDKSKWFDIQSVDS  120 (226)
Q Consensus        46 iq~Ai~~a~~~~g~g~~v~iP~G~tY~~~---~l~l~~~~ks~~v~l~~~g~--l~~~~~~~~~~~~~~~~~i~~~~~~n  120 (226)
                      |++|+.    +.  +..+++-.| ++.+.   +|.+    +| ++||...+.  |.             +..|.+.+++|
T Consensus        38 Lr~al~----~~--~PriIvv~G-~I~~~~~~~l~v----~s-nkTI~G~ga~~I~-------------G~Gi~I~~a~N   92 (340)
T 3zsc_A           38 LEKYTT----AE--GKYVIVVDG-TIVFEPKREIKV----LS-DKTIVGINDAKIV-------------GGGLVIKDAQN   92 (340)
T ss_dssp             HHHHHT----SS--SCEEEEEEE-EEEEEEEEEEEE----CS-SEEEEEEEEEEEE-------------EEEEEEESCEE
T ss_pred             HHHHHh----CC--CCEEEEECc-EEEeCCcceEEe----cC-CCEEEeccCcEEe-------------cCceEEEcCce
Confidence            777773    22  334455689 88765   5666    46 888876532  22             23466777888


Q ss_pred             eEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEe-CeeeEEEEeEEEECCC
Q 047411          121 LQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVM-GCIGVEFGFLSIQAPG  199 (226)
Q Consensus       121 v~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~-~s~~v~i~~~~i~~~~  199 (226)
                      |.|+.--+-++.-..-|.  ..        ....-.|.+..++|+.|+.++|.....-.+.+. .+++|+|+++.+....
T Consensus        93 VIIrnl~i~~~~~~~~~~--~~--------~~~~DaI~i~~s~nVWIDHcs~s~~~Dg~idi~~~s~~vTISnn~f~~h~  162 (340)
T 3zsc_A           93 VIIRNIHFEGFYMEDDPR--GK--------KYDFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHD  162 (340)
T ss_dssp             EEEESCEEECCCCTTCTT--SC--------SSCCCSEEEESCEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEESCS
T ss_pred             EEEeCeEEECCccccCcc--CC--------cCCCCeEEEecCCcEEEEeeeeccCCccceEEecCCceEEEECcEeccCc
Confidence            888885332222110011  00        123346888889999999999998876667776 5899999999998753


Q ss_pred             CC---CCCCeEE---ecCeecEEEEeeEEec
Q 047411          200 TS---PNTDGIH---IQASSNVYIHNAHISN  224 (226)
Q Consensus       200 ~~---~ntDGi~---~~~s~~v~I~n~~i~~  224 (226)
                      ..   ...|+-.   ..+..+|+++++++..
T Consensus       163 k~~LiG~sd~~~~~~d~g~~~vT~hhN~f~~  193 (340)
T 3zsc_A          163 KVSLVGSSDKEDPEQAGQAYKVTYHHNYFKN  193 (340)
T ss_dssp             BCCEECCCTTSCHHHHHHSCEEEEESCEEES
T ss_pred             eeeEeCcCCCCccccccCCcEEEEECeEecC
Confidence            21   1222210   0112479999998863

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=98.00  E-value=2.9e-05  Score=67.16  Aligned_cols=61  Identities=8%  Similarity=0.138  Sum_probs=43.8

Q ss_pred             EEEEeecCcEEEeeeEEeCCCc------------------e--EEE-EeCeeeEEEEeEEEECCCCCCCCCeEEecCeec
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQ------------------T--HVT-VMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSN  214 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~------------------~--~i~-~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~  214 (226)
                      .+.+. +++++++||+|+|+..                  .  .+. -..++++.+++|++.+.     -|.+-.... +
T Consensus        90 tv~v~-a~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G~-----QDTLy~~~g-r  162 (342)
T 2nsp_A           90 TITIS-AKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGY-----QATLYVSGG-R  162 (342)
T ss_dssp             SEEEC-SBSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEECS-----TTCEEECSS-E
T ss_pred             EEEEE-CCCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEecc-----cceEEECCC-C
Confidence            45554 8999999999999741                  1  232 25688999999999974     466766653 5


Q ss_pred             EEEEeeEEe
Q 047411          215 VYIHNAHIS  223 (226)
Q Consensus       215 v~I~n~~i~  223 (226)
                      ..+++|+|+
T Consensus       163 ~~~~~c~I~  171 (342)
T 2nsp_A          163 SFFSDCRIS  171 (342)
T ss_dssp             EEEESCEEE
T ss_pred             EEEEcCEEE
Confidence            777777776

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=97.99  E-value=7.6e-05  Score=64.00  Aligned_cols=69  Identities=12%  Similarity=0.181  Sum_probs=52.3

Q ss_pred             EEEEeecCcEEEeeeEEeCCCce---EEEEeC-eeeEEEEeEEEECCC----CCCCCCe-EEec-CeecEEEEeeEEec
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQT---HVTVMG-CIGVEFGFLSIQAPG----TSPNTDG-IHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~~---~i~~~~-s~~v~i~~~~i~~~~----~~~ntDG-i~~~-~s~~v~I~n~~i~~  224 (226)
                      .|.+.+++||.|++++|++...|   .+.+.. +++|.|++|.+....    +..-.|| +|+. .+++|+|.+|+|..
T Consensus        96 gl~i~~a~NVIIrNl~i~~~~~~~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~  174 (326)
T 3vmv_A           96 GIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFEN  174 (326)
T ss_dssp             CEEEESEEEEEEESCEEECCCSTTSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEE
T ss_pred             EEEEEecceEEEECeEEEcCCCCCCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEec
Confidence            37777899999999999987543   588886 899999999997421    1123465 4664 58999999999863

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=97.88  E-value=0.00011  Score=63.19  Aligned_cols=69  Identities=14%  Similarity=0.141  Sum_probs=49.6

Q ss_pred             EEEEe-ecCcEEEeeeEEeCCC----ceEEEEe-----CeeeEEEEeEEEECCCC------CCCCCe-EEec-CeecEEE
Q 047411          156 VLKFD-RCNNLRMNNMNFINSP----QTHVTVM-----GCIGVEFGFLSIQAPGT------SPNTDG-IHIQ-ASSNVYI  217 (226)
Q Consensus       156 ~i~~~-~~~nv~i~~i~i~ns~----~~~i~~~-----~s~~v~i~~~~i~~~~~------~~ntDG-i~~~-~s~~v~I  217 (226)
                      .|.+. +++||.|++|+|++.+    .-.+.+.     .+++|.|++|.+....+      ..-.|| +|+. .+++|+|
T Consensus        87 gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~VTI  166 (330)
T 2qy1_A           87 GIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTV  166 (330)
T ss_dssp             EEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEEEE
T ss_pred             eEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceEEE
Confidence            57777 8899999999998775    2357777     58999999999974321      111255 4654 5889999


Q ss_pred             EeeEEec
Q 047411          218 HNAHISN  224 (226)
Q Consensus       218 ~n~~i~~  224 (226)
                      .+|+|..
T Consensus       167 Snn~f~~  173 (330)
T 2qy1_A          167 SYNYVYN  173 (330)
T ss_dssp             ESCEEEE
T ss_pred             Ecceecc
Confidence            9998864

>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5}

Probab=97.87  E-value=0.00041  Score=58.49  Aligned_cols=158  Identities=17%  Similarity=0.251  Sum_probs=96.1

Q ss_pred             cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe--eEEEeeCCC
Q 047411           24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS--GSIIAPNGP  101 (226)
Q Consensus        24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~--g~l~~~~~~  101 (226)
                      +++..+.+|||.++-.+||+++|.+.++ .      -..|.+|.| .|..+-+.+     + ...|+..  |+|+.-+..
T Consensus        62 arvls~k~fga~~~~~~d~~~~~~~sl~-s------~~~v~i~~g-vf~ss~i~~-----~-~c~l~g~g~g~~~~~~~~  127 (542)
T 2x3h_A           62 ARVLTSKPFGAAGDATTDDTEVIAASLN-S------QKAVTISDG-VFSSSGINS-----N-YCNLDGRGSGVLSHRSST  127 (542)
T ss_dssp             HHBCBSSCTTCCCBSSSCCHHHHHHHHT-S------SSCEECCSE-EEEECCEEE-----S-CCEEECTTTEEEEECSSS
T ss_pred             heeeecccccccCCcccCcHHHHHhhhc-c------cccEecccc-ccccccccc-----c-cccccccCCceeeeecCC
Confidence            5677889999999999999999999994 1      236999999 999887777     3 6677665  687643222


Q ss_pred             CCcCCCCCcceEEEe-----CccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC
Q 047411          102 NEWKEDDKSKWFDIQ-----SVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP  176 (226)
Q Consensus       102 ~~~~~~~~~~~i~~~-----~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~  176 (226)
                      .        ..+.|.     ..++++|.|      |-..            +  ....+-+.|..-.+++++++.|.|..
T Consensus       128 g--------n~lvfn~p~~g~ls~~ti~~------nk~~------------d--s~qg~qvs~~gg~dvsv~~i~fsn~~  179 (542)
T 2x3h_A          128 G--------NYLVFNNPRTGRLSNITVES------NKAT------------D--TTQGQQVSLAGGSDVTVSDVNFSNVK  179 (542)
T ss_dssp             S--------CCEEEESCEEEEEEEEEEEC------CCSS------------T--TCBCCSEEEESCEEEEEEEEEEEEEC
T ss_pred             C--------CEEEEeCCCCcceeeEEEec------ccCC------------c--cccceEEEecCCCcceEeeeeeeecC
Confidence            1        112221     245666655      2110            0  11223467777778888888877766


Q ss_pred             ceEEEEeC------eeeEEEEeEEEECCCCCCC-CCeEE-ecCeecEEEEeeEEe
Q 047411          177 QTHVTVMG------CIGVEFGFLSIQAPGTSPN-TDGIH-IQASSNVYIHNAHIS  223 (226)
Q Consensus       177 ~~~i~~~~------s~~v~i~~~~i~~~~~~~n-tDGi~-~~~s~~v~I~n~~i~  223 (226)
                      .-++.+..      -++..|++++-.-...+.| .-|.- .++|.|-.|+++.-+
T Consensus       180 g~gfsliayp~~~~p~g~~i~~irg~y~g~a~nk~agcvl~dss~nslid~via~  234 (542)
T 2x3h_A          180 GTGFSLIAYPNDAPPDGLMIKGIRGSYSGYATNKAAGCVLADSSVNSLIDNVIAK  234 (542)
T ss_dssp             SBEEEEEEECSSSCCBSCEEEEEEEEECSCCTTCSEEEEEEESCBSCEEEEEEEE
T ss_pred             CCceeEEEcCCCCCCCceEEeccccceeccccccccceEEeccchhhhhhhhhhh
Confidence            55554431      2345566666554433333 22322 245666666665543

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=97.78  E-value=8.6e-05  Score=64.56  Aligned_cols=69  Identities=23%  Similarity=0.314  Sum_probs=52.4

Q ss_pred             EEEE---eecCcEEEeeeEEeCC----Cc------e-----EEEEeC-eeeEEEEeEEEECCCCC------------CCC
Q 047411          156 VLKF---DRCNNLRMNNMNFINS----PQ------T-----HVTVMG-CIGVEFGFLSIQAPGTS------------PNT  204 (226)
Q Consensus       156 ~i~~---~~~~nv~i~~i~i~ns----~~------~-----~i~~~~-s~~v~i~~~~i~~~~~~------------~nt  204 (226)
                      .|.+   .+++||.|+||+|++.    |.      |     .+.+.. +++|.|++|++....+.            .-.
T Consensus       104 gl~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~~~  183 (361)
T 1pe9_A          104 SLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQH  183 (361)
T ss_dssp             EEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCC
T ss_pred             EEEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEeecCCceEEEEccEeecccccccccccccCcceeec
Confidence            5778   6899999999999964    22      3     588888 99999999999863210            124


Q ss_pred             Ce-EEec-CeecEEEEeeEEec
Q 047411          205 DG-IHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       205 DG-i~~~-~s~~v~I~n~~i~~  224 (226)
                      || ||+. .|++|+|.+|+|..
T Consensus       184 DgllDi~~~s~~VTiS~n~f~~  205 (361)
T 1pe9_A          184 DGALDIKRGSDYVTISNSLIDQ  205 (361)
T ss_dssp             CCSEEECTTCEEEEEESCEEEE
T ss_pred             cceeeeecCCCcEEEEeeEEcC
Confidence            66 5665 68999999999864

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=97.68  E-value=0.0037  Score=54.16  Aligned_cols=154  Identities=14%  Similarity=0.167  Sum_probs=89.7

Q ss_pred             chHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe---------------eeeeeCCCcCccEEEEEee---EEEeeCCCC
Q 047411           41 DDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH---------------PITFTGPCKSSDITIMLSG---SIIAPNGPN  102 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~---------------~l~l~~~~ks~~v~l~~~g---~l~~~~~~~  102 (226)
                      .+.++|++|+.+ ..+   +..|+.-.| ++.+.               +|.+    .| ++||...|   +|.      
T Consensus        31 tt~~~L~~al~~-~~~---~p~VI~V~G-tI~~~~~~~~~s~~~~~~~~~l~v----~s-n~TI~G~G~~~~i~------   94 (355)
T 1pcl_A           31 KNISDFKKALNG-TDS---SAKIIKVTG-PIDISGGKAYTSFDDQKARSQISI----PS-NTTIIGVGSNGKFT------   94 (355)
T ss_pred             CCHHHHHHHHhh-CCC---CcEEEEECC-EEecCCccccccccccccceeEEe----CC-CeEEEEecCCeEEe------
Confidence            355669999932 122   456778889 88764               3444    36 88887652   343      


Q ss_pred             CcCCCCCcceEEEeCccceEEEeceEEeCCC-cccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC-----
Q 047411          103 EWKEDDKSKWFDIQSVDSLQIDGSGTIDGRG-KAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP-----  176 (226)
Q Consensus       103 ~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G-~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~-----  176 (226)
                             +..|.+.+++||.|++.-+-++.. ..-|...       .+-....-.|.+..+++|.|+.++|..+.     
T Consensus        95 -------g~gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~-------~g~~~~~DaI~i~~s~nVWIDH~s~s~~~~~d~~  160 (355)
T 1pcl_A           95 -------NGSLVIKGVKNVILRNLYIETPVDVAPHYESG-------DGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDK  160 (355)
T ss_pred             -------cCEEEEecCCeEEEeeeEEEcCcccccccccc-------cCccccCceEEecCCCcEEEEeeEEeccccCccc
Confidence                   234667778899998843222211 1112100       00001234788899999999999999752     


Q ss_pred             ------------ceEEEEe-CeeeEEEEeEEEECCCCC---CCCCeEE-ec-CeecEEEEeeEEec
Q 047411          177 ------------QTHVTVM-GCIGVEFGFLSIQAPGTS---PNTDGIH-IQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       177 ------------~~~i~~~-~s~~v~i~~~~i~~~~~~---~ntDGi~-~~-~s~~v~I~n~~i~~  224 (226)
                                  -..+.+. .+++|+|+++.+......   ...|.-. .+ +..+|++++|++..
T Consensus       161 ~~~~~G~~~~~~Dgl~Di~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~  226 (355)
T 1pcl_A          161 YTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDR  226 (355)
T ss_pred             cccccCccccccccceeeecCCCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeC
Confidence                        1223344 689999999999874321   1111100 00 12369999998853

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=97.65  E-value=0.00084  Score=58.31  Aligned_cols=62  Identities=18%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             EEEe-ecCcEEEeeeEEeCC-C-----ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEE---ecCeecEEEEeeEEe
Q 047411          157 LKFD-RCNNLRMNNMNFINS-P-----QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIH---IQASSNVYIHNAHIS  223 (226)
Q Consensus       157 i~~~-~~~nv~i~~i~i~ns-~-----~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~---~~~s~~v~I~n~~i~  223 (226)
                      |.+. +++||.|++|+|++. |     .-.+.+..+++|.|++|++...     .|+..   ...+++|+|.+|+|.
T Consensus       126 l~i~~~a~NVIIrnL~i~~~~~~~~~g~DaI~i~~s~nVwIDHcs~s~~-----~d~~~~~g~~~s~~VTISnn~f~  197 (359)
T 1idk_A          126 LRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARI-----GRQHYVLGTSADNRVSLTNNYID  197 (359)
T ss_dssp             EEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEE-----SSCSEEECCCTTCEEEEESCEEE
T ss_pred             EEEecCCCcEEEeCeEEEcccccccccCCceeecCCCcEEEEeeEeecC-----CCCcEEecccCcceEEEECcEec
Confidence            5565 677777777777762 1     1246677777777777777742     33332   345677777777775

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=97.62  E-value=0.00016  Score=64.03  Aligned_cols=69  Identities=16%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             EEEEeecCcEEEeeeEEeCC----Cc----------e-----EEEEeCeeeEEEEeEEEECCCC------------CCCC
Q 047411          156 VLKFDRCNNLRMNNMNFINS----PQ----------T-----HVTVMGCIGVEFGFLSIQAPGT------------SPNT  204 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns----~~----------~-----~i~~~~s~~v~i~~~~i~~~~~------------~~nt  204 (226)
                      .|.+.+++||.|+||+|++.    |.          |     .+.+..+++|.|++|++....+            ..-.
T Consensus       149 gl~i~~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~  228 (416)
T 1vbl_A          149 GFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQH  228 (416)
T ss_dssp             EEEEESCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred             EEEeecCceEEEeCeEEEcCccccccccccccccccccCCCceEEecCCceEEEEccEEecCCCcccccccccCcceeec
Confidence            58888999999999999875    21          2     4888999999999999996321            0124


Q ss_pred             Ce-EEec-CeecEEEEeeEEec
Q 047411          205 DG-IHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       205 DG-i~~~-~s~~v~I~n~~i~~  224 (226)
                      || +|+. .|++|+|.+|+|..
T Consensus       229 DGl~Di~~~s~~VTISnn~f~~  250 (416)
T 1vbl_A          229 DGALDIKNSSDFITISYNVFTN  250 (416)
T ss_dssp             CCSEEEESSCEEEEEESCEEEE
T ss_pred             ccceeeecCCCcEEEEeeEEcC
Confidence            76 4665 68999999999974

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=97.59  E-value=0.00046  Score=63.53  Aligned_cols=110  Identities=14%  Similarity=0.068  Sum_probs=72.4

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccC-CcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEE
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKE-GCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVE  189 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~-~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~  189 (226)
                      .+|.+.+++|++|++-=..+...   +.-.-. +... ++.......+. ..|+||+|+++++.+...-++.+..|+||+
T Consensus       135 ~lI~f~~c~NV~I~gVti~NSp~---~gI~I~-~~~~NDGid~DGi~fd-~~S~NV~I~Nc~I~~tGDDcIaIksseNI~  209 (609)
T 3gq8_A          135 SNLSIRACHNVYIRDIEAVDCTL---HGIDIT-CGGLDYPYLGDGTTAP-NPSENIWIENCEATGFGDDGITTHHSQYIN  209 (609)
T ss_dssp             CSEEEESCEEEEEEEEEEESCSS---CSEEEE-CSSSSCCCCCTTCCCS-SCCEEEEEESCEEESCSSCSEEECSCEEEE
T ss_pred             cEEEEEeeceEEEEeeEEEeCCC---CCeEEe-CCCCCccccCCCcccc-ccceeEEEEeeEEEecCCCEEEecCCeeEE
Confidence            47899999999999832222211   110000 0000 00000000111 139999999999998888899999999999


Q ss_pred             EEeEEEECCCCCCCCCeEEecC-eecEEEEeeEEecC
Q 047411          190 FGFLSIQAPGTSPNTDGIHIQA-SSNVYIHNAHISNG  225 (226)
Q Consensus       190 i~~~~i~~~~~~~ntDGi~~~~-s~~v~I~n~~i~~g  225 (226)
                      |+||++..|....+.-||.+.+ ++||+|+||.+..-
T Consensus       210 I~Nc~~~gp~G~S~~~GIsIGsgs~NVtV~Nc~i~nt  246 (609)
T 3gq8_A          210 ILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGC  246 (609)
T ss_dssp             EESCEEECCSSCSSCCSEEECTTCEEEEEESEEEESS
T ss_pred             EEeEEEECCCCCCCcccEEccCCcccEEEEeeEEECC
Confidence            9999998864234567898864 69999999999753

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=97.57  E-value=0.0018  Score=56.22  Aligned_cols=62  Identities=16%  Similarity=0.091  Sum_probs=34.9

Q ss_pred             EEEe-ecCcEEEeeeEEeCCCc------eEEEEeCeeeEEEEeEEEECCCCCCCCCeEE---ecCeecEEEEeeEEe
Q 047411          157 LKFD-RCNNLRMNNMNFINSPQ------THVTVMGCIGVEFGFLSIQAPGTSPNTDGIH---IQASSNVYIHNAHIS  223 (226)
Q Consensus       157 i~~~-~~~nv~i~~i~i~ns~~------~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~---~~~s~~v~I~n~~i~  223 (226)
                      |.+. +++||.|++|+|++...      -.+.+..+++|.|++|++...     .|+..   ...+++|+|.+|+|.
T Consensus       126 l~i~~~a~NVIIrnl~i~~~~~~~~~~~DaI~i~~s~nvwIDHcs~s~~-----~d~~~~~~~~~s~~vTISnn~f~  197 (359)
T 1qcx_A          126 LRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARI-----GRQHIVLGTSADNRVTISYSLID  197 (359)
T ss_dssp             EEEETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEE-----SSCSEEECSSCCEEEEEESCEEE
T ss_pred             EEEecCCCCEEEeCcEEEecCCcccccCceeEecCCceEEEEeeEeecc-----CcCceeecccccccEEEECcEec
Confidence            5554 56666666666665321      245566666666666666642     23321   234666666666664

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=97.57  E-value=0.00013  Score=63.52  Aligned_cols=70  Identities=16%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             eEEEEeecCcEEEeeeEEeCCCceEEE--EeCeeeEEEEeEEEECCC-CCCCCCeEE-----e-cCeecEEEEeeEEec
Q 047411          155 TVLKFDRCNNLRMNNMNFINSPQTHVT--VMGCIGVEFGFLSIQAPG-TSPNTDGIH-----I-QASSNVYIHNAHISN  224 (226)
Q Consensus       155 ~~i~~~~~~nv~i~~i~i~ns~~~~i~--~~~s~~v~i~~~~i~~~~-~~~ntDGi~-----~-~~s~~v~I~n~~i~~  224 (226)
                      -.|.+..++++.|+.++|.....-.+.  ...+++|+|+++.|.... .+...+|.|     + ..+++|+++++++..
T Consensus       154 DaI~i~~s~nVwIDHcs~s~~~d~~~~~g~~~s~~VTISnn~f~~~~~~s~~~~G~h~~~~~L~G~sd~vT~hhN~f~~  232 (359)
T 1idk_A          154 DAITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYH  232 (359)
T ss_dssp             CSEEECSCEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEES
T ss_pred             CceeecCCCcEEEEeeEeecCCCCcEEecccCcceEEEECcEecCCcccccccCccccceEEEEecCCCeEEEceEeec
Confidence            468888999999999999876544443  457899999999998642 122334333     3 346899999999863

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=97.55  E-value=0.00016  Score=62.93  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=64.9

Q ss_pred             cceEEEece---EEeCCCccccccccc---cc---cc-CCcccCCceEEEEeecCcEEEeeeEEeCCCceEEE--EeCee
Q 047411          119 DSLQIDGSG---TIDGRGKAWWDISCK---IN---KK-EGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVT--VMGCI  186 (226)
Q Consensus       119 ~nv~I~G~G---~idG~G~~~~~~~~~---~~---~~-~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~--~~~s~  186 (226)
                      +|.||.|.|   +|.|.|-........   ++   +. .+......-.|.+..++++.|+.++|.....-.+.  ...++
T Consensus       108 snkTI~G~g~~~~I~G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~DaI~i~~s~nvwIDHcs~s~~~d~~~~~~~~~s~  187 (359)
T 1qcx_A          108 SNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADN  187 (359)
T ss_dssp             SSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEESSCSEEECSSCCE
T ss_pred             CCceEEecCCceEEecceEEEecCCCCEEEeCcEEEecCCcccccCceeEecCCceEEEEeeEeeccCcCceeecccccc
Confidence            588888864   788776433200000   00   00 00001223468888999999999999876443332  34789


Q ss_pred             eEEEEeEEEECCCC-CCCCCeEE-----e-cCeecEEEEeeEEec
Q 047411          187 GVEFGFLSIQAPGT-SPNTDGIH-----I-QASSNVYIHNAHISN  224 (226)
Q Consensus       187 ~v~i~~~~i~~~~~-~~ntDGi~-----~-~~s~~v~I~n~~i~~  224 (226)
                      +|+|+++.|....+ +...+|.|     + ..+++|+++++++..
T Consensus       188 ~vTISnn~f~~~~~~s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~  232 (359)
T 1qcx_A          188 RVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYN  232 (359)
T ss_dssp             EEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEES
T ss_pred             cEEEECcEecCCccccccCcccccceeEEecCCCCeehcccEecc
Confidence            99999999986421 22233333     3 346899999999863

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=97.40  E-value=0.0049  Score=55.26  Aligned_cols=118  Identities=15%  Similarity=0.118  Sum_probs=72.6

Q ss_pred             cEEEEEee---EEEeeCCCCCcCCCCCc-ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEee
Q 047411           86 DITIMLSG---SIIAPNGPNEWKEDDKS-KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDR  161 (226)
Q Consensus        86 ~v~l~~~g---~l~~~~~~~~~~~~~~~-~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~  161 (226)
                      +++|...|   ++......      ..+ .++.+.+++|++|+|-=..+     .|.-....+  -.  ....-.+.+ .
T Consensus       110 nItI~G~Gg~~~iDG~G~~------~~rp~~i~~~~~~Nv~I~gIti~n-----~w~ih~s~~--V~--i~NtDGi~i-~  173 (464)
T 1h80_A          110 NFSFQGLGNGFLVDFKDSR------DKNLAVFKLGDVRNYKISNFTIDD-----NKTIFASIL--VD--VTERNGRLH-W  173 (464)
T ss_dssp             EEEEEECTTCEEEECTTCS------CCBEEEEEECSEEEEEEEEEEEEC-----CSCBSCSEE--EC--EEEETTEEE-E
T ss_pred             ceEEECcCcceEEeCCCCC------CCCceEEEEEeeccEEEeeeEEec-----cceEeecee--ee--eecCCCcee-e
Confidence            77777666   55431110      112 36788999999999943333     222100000  00  000001344 7


Q ss_pred             cCcEEEeeeEEeCCC-ceE-EEEeCeeeEEEEeEEEECCCCCCCCCeEEec------------CeecEEEEeeEEecC
Q 047411          162 CNNLRMNNMNFINSP-QTH-VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ------------ASSNVYIHNAHISNG  225 (226)
Q Consensus       162 ~~nv~i~~i~i~ns~-~~~-i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~------------~s~~v~I~n~~i~~g  225 (226)
                      |+|++|+++++.+.+ ..+ .....|+||+|+|+++.+      ..||.+.            ..+||+++||.+++.
T Consensus       174 s~nV~I~n~~I~~gddgiGs~~~~~~~NV~V~n~~~~g------g~GIrIktg~d~IG~~~~g~v~NI~~~Ni~~~nv  245 (464)
T 1h80_A          174 SRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEG------GIALRMETDNLLMKNYKQGGIRNIFADNIRCSKG  245 (464)
T ss_dssp             EEEEEEEEEEEESCCTTCEEEEESEEEEEEEEEEEEES------SEEEEEECCCHHHHHHTCCEEEEEEEEEEEEESS
T ss_pred             ccCEEEeceEEecCCCeEEecccCCEeEEEEEeeEEEC------CCEEEEEeCCceeccCCCCcEEEEEEEeEEEECC
Confidence            999999999999986 344 667789999999999775      2444331            368999999998764

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=97.34  E-value=0.0011  Score=57.46  Aligned_cols=65  Identities=11%  Similarity=-0.025  Sum_probs=55.9

Q ss_pred             eEEEEeecCcEEEeeeEEeCCCceEEEEeC-eeeEEEEeEEEECCCCCCCCCeEEe--------cCeecEEEEeeEEec
Q 047411          155 TVLKFDRCNNLRMNNMNFINSPQTHVTVMG-CIGVEFGFLSIQAPGTSPNTDGIHI--------QASSNVYIHNAHISN  224 (226)
Q Consensus       155 ~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~-s~~v~i~~~~i~~~~~~~ntDGi~~--------~~s~~v~I~n~~i~~  224 (226)
                      ..|.+..|++.+|++.++.+....++++.. |++++|+++.+..     +.+|+.+        ..+++++|+++.+..
T Consensus       173 dGI~~~~s~~~~i~~N~~~~~~~~GI~~~~~s~~v~I~nN~i~~-----~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~  246 (377)
T 2pyg_A          173 DGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAYG-----NGSSGLVVQRGLEDLALPSNILIDGGAYYD  246 (377)
T ss_dssp             CSEEEESEEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEES-----CSSCSEEEECCSSCCCCCEEEEEESCEEES
T ss_pred             CceeEeccCCcEEECcEEEccccCcEEEEeccCCeEEECCEEEC-----ccCceEEEeccccCCCCCccEEEECCEEEc
Confidence            457888999999999988877788999888 9999999999996     5678777        789999999998763

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=97.34  E-value=0.01  Score=51.02  Aligned_cols=101  Identities=15%  Similarity=0.235  Sum_probs=74.3

Q ss_pred             cEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcE
Q 047411           86 DITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNL  165 (226)
Q Consensus        86 ~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv  165 (226)
                      +..|.++|++.+..          +.-|.+  .+|.||-|.|      ..  .             .....|.+.+++||
T Consensus        47 PriIvv~G~I~~~~----------~~~l~v--~snkTI~G~g------a~--~-------------I~G~Gi~I~~a~NV   93 (340)
T 3zsc_A           47 KYVIVVDGTIVFEP----------KREIKV--LSDKTIVGIN------DA--K-------------IVGGGLVIKDAQNV   93 (340)
T ss_dssp             CEEEEEEEEEEEEE----------EEEEEE--CSSEEEEEEE------EE--E-------------EEEEEEEEESCEEE
T ss_pred             CEEEEECcEEEeCC----------cceEEe--cCCCEEEecc------Cc--E-------------EecCceEEEcCceE
Confidence            67777888876532          122444  3688877743      11  0             01125788899999


Q ss_pred             EEeeeEEeCCC-----------ceEEEEeCeeeEEEEeEEEECCCCCCCCCe-EEec-CeecEEEEeeEEec
Q 047411          166 RMNNMNFINSP-----------QTHVTVMGCIGVEFGFLSIQAPGTSPNTDG-IHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       166 ~i~~i~i~ns~-----------~~~i~~~~s~~v~i~~~~i~~~~~~~ntDG-i~~~-~s~~v~I~n~~i~~  224 (226)
                      .|++++|++.-           .-.+.+..++||.|++|.+..     -.|| +++. .|++|+|.+|+|..
T Consensus        94 IIrnl~i~~~~~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~-----~~Dg~idi~~~s~~vTISnn~f~~  160 (340)
T 3zsc_A           94 IIRNIHFEGFYMEDDPRGKKYDFDYINVENSHHIWIDHITFVN-----GNDGAVDIKKYSNYITVSWNKFVD  160 (340)
T ss_dssp             EEESCEEECCCCTTCTTSCSSCCCSEEEESCEEEEEESCEEES-----CSSCSEEEETTCEEEEEESCEEES
T ss_pred             EEeCeEEECCccccCccCCcCCCCeEEEecCCcEEEEeeeecc-----CCccceEEecCCceEEEECcEecc
Confidence            99999999862           335899999999999999997     3688 7875 58999999999975

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=97.26  E-value=0.001  Score=57.64  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             EEEEeecCcEEEeeeEEeCCCc-----eEEEEeCeeeEEEEeEEEECCCCC--------CCCCe-EEe-cCeecEEEEee
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQ-----THVTVMGCIGVEFGFLSIQAPGTS--------PNTDG-IHI-QASSNVYIHNA  220 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~-----~~i~~~~s~~v~i~~~~i~~~~~~--------~ntDG-i~~-~~s~~v~I~n~  220 (226)
                      .|.+.+++||.|++++|+..+.     -.+.+..+++|.|++|.+....+.        +..|| +|+ ..+++|+|.+|
T Consensus       104 gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~VTISnn  183 (353)
T 1air_A          104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYN  183 (353)
T ss_dssp             EEEEESCCSEEEESCEEESCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEEEEESC
T ss_pred             eEEEeccCcEEEeccEEEeCCCCCCCCCeEEeeCCCcEEEEeeEEecCCcccccccccccccccceeeecccCcEEEEee
Confidence            5788899999999999997653     358899999999999999864211        11366 466 47899999999


Q ss_pred             EEec
Q 047411          221 HISN  224 (226)
Q Consensus       221 ~i~~  224 (226)
                      +|..
T Consensus       184 ~f~~  187 (353)
T 1air_A          184 YIHG  187 (353)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            9974

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=97.16  E-value=0.00079  Score=59.26  Aligned_cols=68  Identities=12%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             EEEEeecCcEEEeeeEEeCC----C----------ce-----EEEEeCeeeEEEEeEEEECCCC------------CCCC
Q 047411          156 VLKFDRCNNLRMNNMNFINS----P----------QT-----HVTVMGCIGVEFGFLSIQAPGT------------SPNT  204 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns----~----------~~-----~i~~~~s~~v~i~~~~i~~~~~------------~~nt  204 (226)
                      .|.+.. +||.|++|+|++.    |          .|     .+.+..++||.|++|++....+            ..-.
T Consensus       144 gl~i~~-~NVIIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~  222 (399)
T 2o04_A          144 NFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHH  222 (399)
T ss_dssp             EEEECS-EEEEEESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred             EEEeeC-CCEEEeCeEEecCccccccccccccccccccCCCCeEEecCCCcEEEEeeeeecCCCccccccccccceeecc
Confidence            588887 9999999999875    2          12     4888999999999999996321            0124


Q ss_pred             Ce-EEec-CeecEEEEeeEEec
Q 047411          205 DG-IHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       205 DG-i~~~-~s~~v~I~n~~i~~  224 (226)
                      || +|+. .+++|+|.+|+|..
T Consensus       223 Dgl~Di~~~s~~VTISnn~f~~  244 (399)
T 2o04_A          223 DGQTDASNGANYITMSYNYYHD  244 (399)
T ss_dssp             CCSEEEETTCEEEEEESCEEEE
T ss_pred             ccceeeeccCCcEEEEeeEEcC
Confidence            76 4665 68999999999974

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=96.98  E-value=0.002  Score=55.66  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=70.1

Q ss_pred             EeCccceEEEeceEEeCCCcccccccccc-cccCCcccCC--ceEEEEeecCcEEEeeeEEeCCC---------------
Q 047411          115 IQSVDSLQIDGSGTIDGRGKAWWDISCKI-NKKEGCVKLA--PTVLKFDRCNNLRMNNMNFINSP---------------  176 (226)
Q Consensus       115 ~~~~~nv~I~G~G~idG~G~~~~~~~~~~-~~~~~~~~~r--p~~i~~~~~~nv~i~~i~i~ns~---------------  176 (226)
                      ..+..-|.+.+.|+|++.+...-...... -...+. ...  ...|.+.+++||.|++++|++.-               
T Consensus        64 ~~~P~~Ivf~~~g~I~l~~~l~V~sn~TI~G~ga~~-~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~  142 (346)
T 1pxz_A           64 REKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADV-HLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGV  142 (346)
T ss_dssp             CSSCEEEEESSCEEECCSSCEECCSSEEEECTTSCE-EEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEE
T ss_pred             cCCCeEEEEcCCcEEecCccEEecCCeEEEccCCce-EEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCccc
Confidence            34444566667789998764322210000 000000 001  14678889999999999999751               


Q ss_pred             -------ceEEEEeCeeeEEEEeEEEECCCCCCCCCeE-Ee-cCeecEEEEeeEEec
Q 047411          177 -------QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGI-HI-QASSNVYIHNAHISN  224 (226)
Q Consensus       177 -------~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi-~~-~~s~~v~I~n~~i~~  224 (226)
                             .-++.+..+++|.|++|++..     ..||+ ++ ..|++|+|++|+|..
T Consensus       143 g~~~~~~~DaI~i~~s~nVwIDHcs~s~-----~~Dg~id~~~~s~~vTISnn~f~~  194 (346)
T 1pxz_A          143 EPVHAQDGDAITMRNVTNAWIDHNSLSD-----CSDGLIDVTLGSTGITISNNHFFN  194 (346)
T ss_dssp             EEECCCCCCSEEEESCEEEEEESCEEEC-----CSSEEEEEESSCEEEEEESCEEES
T ss_pred             ccccCCCCCEEEEecCceEEEEeeEEec-----CCCCcEeeccCcceEEEEeeEEec
Confidence                   125888899999999999996     47897 77 689999999999974

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=96.76  E-value=0.0052  Score=52.72  Aligned_cols=65  Identities=11%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             EEEeecCcEEEeeeEEeCCC--ceEEEEe-CeeeEEEEeEEEECCCCCCCCCeEEec-----CeecEEEEeeEEec
Q 047411          157 LKFDRCNNLRMNNMNFINSP--QTHVTVM-GCIGVEFGFLSIQAPGTSPNTDGIHIQ-----ASSNVYIHNAHISN  224 (226)
Q Consensus       157 i~~~~~~nv~i~~i~i~ns~--~~~i~~~-~s~~v~i~~~~i~~~~~~~ntDGi~~~-----~s~~v~I~n~~i~~  224 (226)
                      +.+.-.+|.+|.+-   +++  ..++.+. .++||.|+|++|+........|+|.+.     .++||+|++|.+.-
T Consensus        66 ~~l~v~sn~TI~G~---~a~i~g~gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~  138 (330)
T 2qy1_A           66 VQIKNKSDVTIKGA---NGSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFA  138 (330)
T ss_dssp             EEEESCCSEEEEEC---TTCBBSSEEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEEC
T ss_pred             eEEEcCCCeEEECC---CcEEeeeeEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEc
Confidence            34444667777552   222  4678888 899999999999975322368999999     59999999999963

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=96.69  E-value=0.0036  Score=54.19  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=52.1

Q ss_pred             EEEEee-cCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCC-CCCCCCeEEecCeecEEEEeeEEec
Q 047411          156 VLKFDR-CNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPG-TSPNTDGIHIQASSNVYIHNAHISN  224 (226)
Q Consensus       156 ~i~~~~-~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~-~~~ntDGi~~~~s~~v~I~n~~i~~  224 (226)
                      .+.+.. ..|++|.+.+-. .+..++.+..++||.|+|++|+... .....|+|.+..++||+|++|.+..
T Consensus        81 ~~~i~~~~sn~TI~G~~~~-~~g~gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~~s~nVWIDH~s~s~  150 (353)
T 1air_A           81 GVEIKEFTKGITIIGANGS-SANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFA  150 (353)
T ss_dssp             EEEEESBCSCEEEEECTTC-CBSSEEEEESCCSEEEESCEEESCSCGGGTCCSEEEESCCSEEEESCEEEC
T ss_pred             ceEEEecCCCEEEEeccCC-CCCceEEEeccCcEEEeccEEEeCCCCCCCCCeEEeeCCCcEEEEeeEEec
Confidence            455554 468888885311 1256888889999999999999743 2346899999999999999999974

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=96.68  E-value=0.0059  Score=53.95  Aligned_cols=61  Identities=18%  Similarity=0.282  Sum_probs=47.5

Q ss_pred             cCcEEEeee----EEeCCCceEEEEeCeeeEEEEeEEEECCCC---------------CCCCCeEEecCeecEEEEeeEE
Q 047411          162 CNNLRMNNM----NFINSPQTHVTVMGCIGVEFGFLSIQAPGT---------------SPNTDGIHIQASSNVYIHNAHI  222 (226)
Q Consensus       162 ~~nv~i~~i----~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~---------------~~ntDGi~~~~s~~v~I~n~~i  222 (226)
                      .+|.+|.+.    +|.+   .++.+..++||.|+|++|+...+               .+..|+|.+.+++||+|++|.|
T Consensus       131 ~snkTI~G~G~~~~i~g---~gl~i~~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~  207 (416)
T 1vbl_A          131 GSNTSIIGVGKDAKIKG---GGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTF  207 (416)
T ss_dssp             CSSEEEEECTTCCEEES---CEEEEESCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEESCEEEEEESCEE
T ss_pred             CCCeeEEecCCCeEEec---CEEEeecCceEEEeCeEEEcCccccccccccccccccccCCCceEEecCCceEEEEccEE
Confidence            456666553    4543   47778899999999999987532               1357999999999999999999


Q ss_pred             ecC
Q 047411          223 SNG  225 (226)
Q Consensus       223 ~~g  225 (226)
                      ..+
T Consensus       208 s~~  210 (416)
T 1vbl_A          208 TDG  210 (416)
T ss_dssp             ECT
T ss_pred             ecC
Confidence            854

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=96.18  E-value=0.015  Score=51.14  Aligned_cols=60  Identities=13%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             cCcEEEeee----EEeCCCceEEEEeCeeeEEEEeEEEECCCC---------------CCCCCeEEecCeecEEEEeeEE
Q 047411          162 CNNLRMNNM----NFINSPQTHVTVMGCIGVEFGFLSIQAPGT---------------SPNTDGIHIQASSNVYIHNAHI  222 (226)
Q Consensus       162 ~~nv~i~~i----~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~---------------~~ntDGi~~~~s~~v~I~n~~i  222 (226)
                      .+|.+|.+.    +|.+   .++.+.. +||.|+|++|+...+               ....|+|.+..++||+|++|.+
T Consensus       126 ~snkTI~G~G~~~~i~g---~gl~i~~-~NVIIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~  201 (399)
T 2o04_A          126 PANTTIVGSGTNAKVVG---GNFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTF  201 (399)
T ss_dssp             CSSEEEEESSSCCEEES---CEEEECS-EEEEEESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEESCEEEEEESCEE
T ss_pred             CCCceEEeccCCeEEee---CEEEeeC-CCEEEeCeEEecCccccccccccccccccccCCCCeEEecCCCcEEEEeeee
Confidence            456666553    4553   4677877 999999999987532               1357999999999999999999


Q ss_pred             ecC
Q 047411          223 SNG  225 (226)
Q Consensus       223 ~~g  225 (226)
                      ..+
T Consensus       202 s~~  204 (399)
T 2o04_A          202 NDG  204 (399)
T ss_dssp             ECT
T ss_pred             ecC
Confidence            854

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=96.15  E-value=0.022  Score=49.31  Aligned_cols=60  Identities=27%  Similarity=0.400  Sum_probs=45.6

Q ss_pred             CcEEEeee----EEeCCCceEEEE---eCeeeEEEEeEEEECCCC-C----------CCCCeEEecC-eecEEEEeeEEe
Q 047411          163 NNLRMNNM----NFINSPQTHVTV---MGCIGVEFGFLSIQAPGT-S----------PNTDGIHIQA-SSNVYIHNAHIS  223 (226)
Q Consensus       163 ~nv~i~~i----~i~ns~~~~i~~---~~s~~v~i~~~~i~~~~~-~----------~ntDGi~~~~-s~~v~I~n~~i~  223 (226)
                      +|.+|.+.    +|.+   .++.+   ..++||.|+|++|+...+ .          ...|+|.+.. ++||+|++|.+.
T Consensus        87 snkTI~G~G~~~~i~g---~gl~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~~~s~nVWIDHcs~s  163 (361)
T 1pe9_A           87 ANTTVIGLGTDAKFIN---GSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTIS  163 (361)
T ss_dssp             SSEEEEECTTCCEEES---SEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEE
T ss_pred             CCcEEEccCCCeEEec---CEEEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEeecCCceEEEEccEee
Confidence            55555543    4443   47778   689999999999997532 1          3479999999 999999999998


Q ss_pred             cC
Q 047411          224 NG  225 (226)
Q Consensus       224 ~g  225 (226)
                      .+
T Consensus       164 ~~  165 (361)
T 1pe9_A          164 DG  165 (361)
T ss_dssp             CT
T ss_pred             cc
Confidence            53

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}

Probab=95.81  E-value=0.12  Score=45.57  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=29.9

Q ss_pred             ecCcEEEeeeEEeCCCce----------EEEEeCeeeEEEEeEEEECCCC
Q 047411          161 RCNNLRMNNMNFINSPQT----------HVTVMGCIGVEFGFLSIQAPGT  200 (226)
Q Consensus       161 ~~~nv~i~~i~i~ns~~~----------~i~~~~s~~v~i~~~~i~~~~~  200 (226)
                      ..+++.++||+|+|+..-          .+ ...+++..+.+|++.+..+
T Consensus       199 ~g~~F~a~niTf~Ntag~~~~~~~~QAVAL-~v~gDr~~fy~C~f~G~QD  247 (422)
T 3grh_A          199 QNNGLQLQNLTIENTLGDSVDAGNHPAVAL-RTDGDQVQINNVNILGRQN  247 (422)
T ss_dssp             CCTTCEEEEEEEEETTGGGSCSSCCCCCSE-EECCSSEEEEEEEEECSTT
T ss_pred             ECCCEEEEeeEEEeCCCCCCCCCCCceEEE-EecCCcEEEEeeEEEeecc
Confidence            478999999999988431          23 3467899999999998654

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=95.70  E-value=0.018  Score=49.23  Aligned_cols=44  Identities=16%  Similarity=0.217  Sum_probs=38.0

Q ss_pred             EEEEeCeeeEEEEeEEEECCCCCCCCCeEEecC-eecEEEEeeEEe
Q 047411          179 HVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQA-SSNVYIHNAHIS  223 (226)
Q Consensus       179 ~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~-s~~v~I~n~~i~  223 (226)
                      ++.+..++||.|+|++|+... ....|+|.+.. ++||+|++|.+.
T Consensus        96 gl~i~~a~NVIIrNl~i~~~~-~~~~DaI~i~~~s~nVWIDH~s~s  140 (326)
T 3vmv_A           96 GIRLSNAHNIIIQNVSIHHVR-EGEGTAIEVTDDSKNVWIDHNEFY  140 (326)
T ss_dssp             CEEEESEEEEEEESCEEECCC-STTSCSEEEETTCEEEEEESCEEE
T ss_pred             EEEEEecceEEEECeEEEcCC-CCCCCeEEEecCCCcEEEEeeEEe
Confidence            566678999999999999853 35689999997 999999999996

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=95.67  E-value=0.025  Score=49.52  Aligned_cols=106  Identities=13%  Similarity=0.099  Sum_probs=74.1

Q ss_pred             ceEEEeCccceEEEeceEE-eCCCcccccccc--c--ccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCe
Q 047411          111 KWFDIQSVDSLQIDGSGTI-DGRGKAWWDISC--K--INKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGC  185 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~i-dG~G~~~~~~~~--~--~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s  185 (226)
                      ..+.++++++.+|.+.-+. -|+|-..|....  +  .+.-..  ..+...++++++.+..|++-++..-..++++++.|
T Consensus       185 fGI~l~~a~~~~I~~N~I~e~GNgI~L~G~~~~~~I~~N~i~~--~~dG~gIyl~ns~~~~I~~N~i~~~~R~gIh~m~s  262 (410)
T 2inu_A          185 HALIVRGADALRVNDNMIAECGNCVELTGAGQATIVSGNHMGA--GPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGC  262 (410)
T ss_dssp             EEEEETTEESCEEESCEEESSSEEEEECSCEESCEEESCEEEC--CTTSEEEEEESEESCEEESCEECSCSSEEEEEESC
T ss_pred             EEEEEccCCCcEEECCEEEecCCceeeccccccceEecceeee--cCCCCEEEEEeCCCCEEECCCcccCcceEEEEEcc
Confidence            3566777778887775333 144444444110  0  000011  34556799999999999999886666889999999


Q ss_pred             eeEEEEeEEEECCCCCCCCCeEEecC--eecEEEEeeEEe
Q 047411          186 IGVEFGFLSIQAPGTSPNTDGIHIQA--SSNVYIHNAHIS  223 (226)
Q Consensus       186 ~~v~i~~~~i~~~~~~~ntDGi~~~~--s~~v~I~n~~i~  223 (226)
                      .+..|++.++..     +.-|++.+.  |++.+|+++.+.
T Consensus       263 ~~~~i~~N~f~~-----~~~Gi~~M~s~~~~n~v~~N~f~  297 (410)
T 2inu_A          263 NRCSVTSNRLQG-----FYPGMLRLLNGCKENLITANHIR  297 (410)
T ss_dssp             BSCEEESCEEEE-----SSSCSEEEESSCBSCEEESCEEE
T ss_pred             CCCEEECCEEec-----ceeEEEEEEcCCCCCEEECCEEe
Confidence            999999999996     678899987  448999888876

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=95.53  E-value=0.019  Score=50.43  Aligned_cols=62  Identities=11%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             EEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecC-eecEEEEeeEEe
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQA-SSNVYIHNAHIS  223 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~-s~~v~I~n~~i~  223 (226)
                      .|.+ ....++|++++|+|+..-++.+.. .+.+|++++++..    ...||.+.. +++.+|++|++.
T Consensus       109 ~i~i-~~~~~~i~gl~I~n~g~~GI~v~g-s~~~i~n~~i~~n----~~~GI~l~~~~s~n~I~nn~i~  171 (400)
T 1ru4_A          109 GFYV-TGDYWYFKGVEVTRAGYQGAYVIG-SHNTFENTAFHHN----RNTGLEINNGGSYNTVINSDAY  171 (400)
T ss_dssp             SEEE-CSSCEEEESEEEESCSSCSEEECS-SSCEEESCEEESC----SSCSEEECTTCCSCEEESCEEE
T ss_pred             EEEE-ECCeEEEEeEEEEeCCCCcEEEeC-CCcEEEeEEEECC----CceeEEEEcccCCeEEEceEEE
Confidence            4666 689999999999999877888876 6889999999973    234999986 448999999985

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=88.87  E-value=0.14  Score=45.16  Aligned_cols=38  Identities=34%  Similarity=0.422  Sum_probs=26.6

Q ss_pred             cCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe
Q 047411           32 FGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH   74 (226)
Q Consensus        32 yGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~   74 (226)
                      =||+|||++|||+|+.+|+. +...    +.++=-.|.||.+.
T Consensus         4 ~~a~gdgvtddt~a~~~~l~-~~~~----~~~IDG~G~T~kVs   41 (670)
T 3ju4_A            4 GSAKGDGVTDDTAALTSALN-DTPV----GQKINGNGKTYKVT   41 (670)
T ss_dssp             CCCCCEEEEECHHHHHHHHH-HSCT----TSCEECTTCEEECS
T ss_pred             CcccCCCccCcHHHHHHHhc-cCCC----CeEEeCCCceEEee
Confidence            48999999999999999994 4332    23444445566554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1rmga_	422	b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a	8e-34
d1czfa_	335	b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill	6e-29
d1ia5a_	339	b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill	2e-25
d1ogmx2	373	b.80.1.10 (X:202-574) Dextranase, catalytic domain	3e-23
d1nhca_	336	b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill	1e-22
d1hg8a_	349	b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo	4e-20
d1bhea_	376	b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor	2e-19
d1k5ca_	333	b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p	8e-17

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  123 bits (309), Expect = 8e-34
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 15  ISTASIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH 74
           +++AS +      N+L +GA  D + D   A   AW     A      + IP G   L  
Sbjct: 9   LTSASTKGATKTCNILSYGAVADNSTDVGPAITSAWA----ACKSGGLVYIPSGNYALNT 64

Query: 75  PITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGK 134
            +T TG        I L G I      +           D    +       G + G G 
Sbjct: 65  WVTLTGGSA---TAIQLDGIIYRTGTASGN----MIAVTDTTDFELFSSTSKGAVQGFGY 117

Query: 135 AWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLS 194
            +                   +L+     +  ++++  +++P  H T+  C   E   ++
Sbjct: 118 VYHAEGTY----------GARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMA 167

Query: 195 IQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226
           I+        DGI +   SN+++H+  ++N  
Sbjct: 168 IRGG-NEGGLDGIDVW-GSNIWVHDVEVTNKD 197

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

 Score =  108 bits (271), Expect = 6e-29
 Identities = 37/195 (18%), Positives = 61/195 (31%), Gaps = 28/195 (14%)

Query: 37  DGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSII 96
           D     + A  KA    CS    +  + +P G T        TG        ++  G+  
Sbjct: 1   DSCTFTTAAAAKAGKAKCSTITLN-NIEVPAGTTL-----DLTGLTSG--TKVIFEGTTT 52

Query: 97  APNGPNEWKEDDKSKWFDIQSVDSLQIDGSG--TIDGRGKAWWDISCKINKKEGCVKLAP 154
                 EW     +      S + + + G+    I+  G  WWD      KK       P
Sbjct: 53  FQ--YEEW-----AGPLISMSGEHITVTGASGHLINCDGARWWDGKGTSGKK------KP 99

Query: 155 TVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAP----GTSPNTDGIHIQ 210
                   ++  +  +N  N+P    +V     + F  ++I           NTD   + 
Sbjct: 100 KFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDITFTDVTINNADGDTQGGHNTDAFDVG 158

Query: 211 ASSNVYIHNAHISNG 225
            S  V I    + N 
Sbjct: 159 NSVGVNIIKPWVHNQ 173

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

 Score = 99.4 bits (247), Expect = 2e-25
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 26/190 (13%)

Query: 42  DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGP 101
           +  +       +CS    S  + +P G T               D+T +  G+ +  +G 
Sbjct: 10  NGASSASKSKTSCSTIVLS-NVAVPSGTTL--------------DLTKLNDGTHVIFSGE 54

Query: 102 NEWKEDDKSKWFDIQSVDSLQIDGSG--TIDGRGKAWWDISCKINKKEGCVKLAPTVLKF 159
             +   + S      S   L I G+   +I+G G  WWD       K       P     
Sbjct: 55  TTFGYKEWSGPLISVSGSDLTITGASGHSINGDGSRWWDGEGGNGGK-----TKPKFFAA 109

Query: 160 DRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA----PGTSPNTDGIHIQASSNV 215
               N  ++ +  +NSP    +V G   +    ++I           NTD   I  S+ V
Sbjct: 110 HSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYV 169

Query: 216 YIHNAHISNG 225
            I  A + N 
Sbjct: 170 TISGATVYNQ 179

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

 Score = 94.0 bits (233), Expect = 3e-23
 Identities = 24/202 (11%), Positives = 45/202 (22%), Gaps = 15/202 (7%)

Query: 30  LDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITI 89
           L  G       D++        N     AKS  +  P G  + ++              +
Sbjct: 1   LPSGMIPHMTPDNTQTMTPGPINNGDWGAKS-ILYFPPG-VYWMNQDQSGNSG-----KL 53

Query: 90  MLSGSIIAPNGPNEWKEDDK--SKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKI---N 144
             +   +  N    +           +  +  +    G G + G    +   +       
Sbjct: 54  GSNHIRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAV 113

Query: 145 KKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSI-QAPGTSPN 203
           K +                            P   +   G  G+        Q       
Sbjct: 114 KSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQ 173

Query: 204 TDGIHIQASSNVYIHNAHISNG 225
           TDG  I    N  +H+      
Sbjct: 174 TDGPEI--YPNSVVHDVFWHVN 193

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

 Score = 92.1 bits (228), Expect = 1e-22
 Identities = 43/190 (22%), Positives = 65/190 (34%), Gaps = 25/190 (13%)

Query: 40  ADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPN 99
              S +      ++CS    S ++ +P G+T        +     S  TI   G+     
Sbjct: 4   TFTSASEASESISSCSDVVLS-SIEVPAGETLD-----LSDAADGS--TITFEGTTSF-- 53

Query: 100 GPNEWKEDDKSKWFDIQSVD-SLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLK 158
           G  EWK             D ++ +     IDG G  WWD     +K     K  P  + 
Sbjct: 54  GYKEWK----GPLIRFGGKDLTVTMADGAVIDGDGSRWWD-----SKGTNGGKTKPKFMY 104

Query: 159 FDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTS----PNTDGIHIQASSN 214
                +     +N  N+P   ++V     V     +I           NTDG  I  S+ 
Sbjct: 105 IHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTG 163

Query: 215 VYIHNAHISN 224
           VYI  A + N
Sbjct: 164 VYISGATVKN 173

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

 Score = 85.2 bits (210), Expect = 4e-20
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 30/204 (14%)

Query: 37  DGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSII 96
           D  +    + +    ++C     +    +P GK   +  +        +D T+   G+  
Sbjct: 1   DPCSVTEYSGLATAVSSCKNIVLN-GFQVPTGKQLDLSSL-------QNDSTVTFKGTTT 52

Query: 97  APNGPNEWKEDDKSKWFDIQSVDSLQIDGSG--TIDGRGKAWWDISCKINKKEGCVKLAP 154
                +            + S  ++ I G+    IDG G+A+WD   K +      K   
Sbjct: 53  FATTADNDF------NPIVISGSNITITGASGHVIDGNGQAYWD--GKGSNSNSNQKPDH 104

Query: 155 TVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA------------PGTSP 202
            ++      N ++ N+N  N P     + G   +    L +                 + 
Sbjct: 105 FIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAH 164

Query: 203 NTDGIHIQASSNVYIHNAHISNGT 226
           NTDG  I +S +V + N H+ N  
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQD 188

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score = 82.9 bits (204), Expect = 2e-19
 Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 34/216 (15%)

Query: 34  AAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKT--FLVHPITFTGPCKSSDITIML 91
                ++  +    KA N       +   + +  G T  FL  P++       S +++++
Sbjct: 17  TLKADSSTATSTIQKALN----NCDQGKAVRLSAGSTSVFLSGPLSLP-----SGVSLLI 67

Query: 92  S--GSIIAPNGPNEWKEDDKSK------------WFDIQSVDSLQIDGSGTIDG------ 131
               ++ A N    ++    S             +    S  +  I G GTIDG      
Sbjct: 68  DKGVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKL 127

Query: 132 --RGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVE 189
             +  +WW+++     K+   +  P +++ ++  N  + N++ INSP  HV      G  
Sbjct: 128 QDKKVSWWELAADAKVKKLK-QNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFT 186

Query: 190 FGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
               +I+ P T+ NTDGI   +S N+ I  ++I+ G
Sbjct: 187 AWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATG 222

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

 Score = 75.4 bits (185), Expect = 8e-17
 Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 27/187 (14%)

Query: 45  AFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEW 104
           +   A +    +        +P G T +++P            T+ ++G I         
Sbjct: 5   SVDDAKDIAGCSAVTLNGFTVPAGNTLVLNPDKGA--------TVTMAGDITF--AKTTL 54

Query: 105 KEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNN 164
                   F I       +      DG G  +WD     N                   +
Sbjct: 55  D----GPLFTIDGTGINFVGADHIFDGNGALYWDGKGTNNGT------HKPHPFLKIKGS 104

Query: 165 LRMNNMNFINSPQTHVTVMGC------IGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIH 218
                   +NSP   ++V          G+     +        NTDG  +  ++NV I 
Sbjct: 105 GTYKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS-ANNVTIQ 163

Query: 219 NAHISNG 225
           N  + N 
Sbjct: 164 NCIVKNQ 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	100.0
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	100.0
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	100.0
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	100.0
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	100.0
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	100.0
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	99.98
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	99.95
d1h80a_	464	iota-carrageenase {Alteromonas sp., atcc 43554 [Ta	99.43
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	98.49
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	98.45
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	98.3
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	98.26
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	98.14
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	98.13
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	98.07
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	97.87
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	97.68
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	97.64
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	97.58
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	97.44
d1qjva_	342	Pectin methylesterase PemA {Erwinia chrysanthemi [	97.1
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	96.88
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	96.78
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	96.75
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	96.73
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	96.68
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	96.56
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	96.43
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	95.95
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	95.86
d1gq8a_	319	Pectin methylesterase PemA {Carrot (Daucus carota)	95.79
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	95.15
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	94.52
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	94.43
d1ee6a_	197	Pectate lyase {Bacillus sp., strain ksmp15 [TaxId:	85.84
d1gq8a_	319	Pectin methylesterase PemA {Carrot (Daucus carota)	84.16
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	81.22

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.7e-40  Score=293.52  Aligned_cols=182  Identities=21%  Similarity=0.416  Sum_probs=156.9

Q ss_pred             ccccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe-eeeeeCCCcCccEEEEEeeEEEeeC
Q 047411           21 RINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH-PITFTGPCKSSDITIMLSGSIIAPN   99 (226)
Q Consensus        21 ~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~-~l~l~~~~ks~~v~l~~~g~l~~~~   99 (226)
                      .+..++|||+||||+|||++|||+|||+|| +||+.   |++|+||+| +|++. ++.|.++  + +++|+++|+|+++.
T Consensus        15 ~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai-~ac~~---gg~V~iP~G-ty~l~~~i~l~g~--~-~~~l~~~G~i~~~~   86 (422)
T d1rmga_          15 KGATKTCNILSYGAVADNSTDVGPAITSAW-AACKS---GGLVYIPSG-NYALNTWVTLTGG--S-ATAIQLDGIIYRTG   86 (422)
T ss_dssp             HHHHCEEEGGGGTCCCSSSSBCHHHHHHHH-HHHTB---TCEEEECSS-EEEECSCEEEESC--E-EEEEEECSEEEECC
T ss_pred             cCCCcEEEEecCCCCCCCCccCHHHHHHHH-HhcCC---CCEEEECCC-cEEEeCcEEEcCC--C-ceEEEEeEEEEecc
Confidence            345789999999999999999999999999 58876   679999999 99885 7999874  4 89999999999876


Q ss_pred             CCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceE
Q 047411          100 GPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTH  179 (226)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~  179 (226)
                      ....|.    ..+....+.+.+.+.|.|+|||+|+.||...          ..+|+++.|.+|+|++|++++++|+|+||
T Consensus        87 ~~~~~~----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~----------~~~p~~l~~~~~~n~~i~git~~nsp~~~  152 (422)
T d1rmga_          87 TASGNM----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG----------TYGARILRLTDVTHFSVHDIILVDAPAFH  152 (422)
T ss_dssp             CCSSEE----EEEEEEEEEEEECSSSCCEEECCTHHHHTTT----------CCCCEEEEEEEEEEEEEEEEEEECCSSCS
T ss_pred             CCccCE----EEeccCccEEEEEeecceEEecCcceecCCC----------CCCCcEEEEEeeeeeEEECcEecCCCceE
Confidence            654332    2344445556667788899999999999721          57899999999999999999999999999


Q ss_pred             EEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       180 i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +++..|++++|+|++|.++ ..+|+||||+.+ +||+|+||+|.+||
T Consensus       153 i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gD  197 (422)
T d1rmga_         153 FTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKD  197 (422)
T ss_dssp             EEEEEEEEEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSS
T ss_pred             EEEeccccEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCC
Confidence            9999999999999999996 468999999976 58999999999998

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=100.00  E-value=4.4e-39  Score=282.15  Aligned_cols=179  Identities=25%  Similarity=0.456  Sum_probs=153.1

Q ss_pred             CCCcchHHHHHHHHHHhcccCCCCCEEEecCCCe---EEEeeeeeeCCCcCccEEEEEe--eEEEeeCCCCCcCCC----
Q 047411           37 DGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKT---FLVHPITFTGPCKSSDITIMLS--GSIIAPNGPNEWKED----  107 (226)
Q Consensus        37 dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~t---Y~~~~l~l~~~~ks~~v~l~~~--g~l~~~~~~~~~~~~----  107 (226)
                      ++.+|+|+|||+|| ++|++   |++|+||+| +   |+.++|.|    || +++|+++  ++|+++.+.++|+..    
T Consensus        20 ~~~~~~T~aIq~AI-dac~~---Gg~V~iP~G-~~~vyltg~i~L----kS-nv~L~l~~ga~L~~s~d~~~y~~~~~~~   89 (376)
T d1bhea_          20 ADSSTATSTIQKAL-NNCDQ---GKAVRLSAG-STSVFLSGPLSL----PS-GVSLLIDKGVTLRAVNNAKSFENAPSSC   89 (376)
T ss_dssp             CCSSBCHHHHHHHH-TTCCT---TCEEEEECS-SSSEEEESCEEC----CT-TCEEEECTTCEEEECSCSGGGBSSTTCS
T ss_pred             CCCChhHHHHHHHH-HHCCC---CCEEEEcCC-CcceEEEecEEE----CC-CCEEEEeCCEEEEEcCCHHHccccccee
Confidence            35689999999999 57865   779999999 6   88899999    68 9999998  699999998888631    


Q ss_pred             --------CCcceEEEeCccceEEEeceEEeCCCccc--------ccccccccccCCcccCCceEEEEeecCcEEEeeeE
Q 047411          108 --------DKSKWFDIQSVDSLQIDGSGTIDGRGKAW--------WDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMN  171 (226)
Q Consensus       108 --------~~~~~i~~~~~~nv~I~G~G~idG~G~~~--------~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~  171 (226)
                              ...++|.+.+++||+|+|.|+|||+|..|        |............ ..||++|.|.+|+|++|+|++
T Consensus        90 ~~~~~~~~~~~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~-~~rP~~i~~~~~~nv~i~~it  168 (376)
T d1bhea_          90 GVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLK-QNTPRLIQINKSKNFTLYNVS  168 (376)
T ss_dssp             SCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCE-ECCCCSEEEESCEEEEEEEEE
T ss_pred             eeEeccCcccceeEEecCcceEEEEeCcEEecccceeecCCccchhccccccccccCC-CCCCeEEEEEecccEEEEeeE
Confidence                    12468999999999999999999999754        4321110000111 589999999999999999999


Q ss_pred             EeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          172 FINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       172 i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      |+|+|+|++++..|++++|+|++|.++..++|+||||+++|+||+|+||+|++||
T Consensus       169 i~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gD  223 (376)
T d1bhea_         169 LINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGD  223 (376)
T ss_dssp             EECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSS
T ss_pred             EecCCceEEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeecCC
Confidence            9999999999999999999999999998889999999999999999999999998

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=100.00  E-value=2.7e-35  Score=254.01  Aligned_cols=168  Identities=22%  Similarity=0.364  Sum_probs=143.1

Q ss_pred             CCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEe
Q 047411           37 DGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQ  116 (226)
Q Consensus        37 dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~  116 (226)
                      ||.||+|+|+.+|..+||++.+ +++|+||+| +|+.    |+++ ++ +++|.++|++.+.  ...|.    ++++.+.
T Consensus         1 dg~t~~t~a~~~a~~~aC~~~~-~~~v~VP~G-~~l~----l~~l-~~-g~~~~~~g~~~~~--~~~w~----~~~~~~~   66 (335)
T d1czfa_           1 DSCTFTTAAAAKAGKAKCSTIT-LNNIEVPAG-TTLD----LTGL-TS-GTKVIFEGTTTFQ--YEEWA----GPLISMS   66 (335)
T ss_dssp             CEEEESSHHHHHHHGGGCSEEE-EESCEECTT-CCEE----ECSC-CT-TCEEEEESEEEEC--CCCSC----CCSEEEE
T ss_pred             CCcccchHHHHHHHHHHCCCCC-CCeEEECCC-CEEe----cccC-CC-CCEEEEEeEEecc--cccCC----CCEEEEe
Confidence            6889999999999889999877 789999999 6643    3344 45 8999999998774  34565    5666665


Q ss_pred             CccceEEEece--EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEE
Q 047411          117 SVDSLQIDGSG--TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLS  194 (226)
Q Consensus       117 ~~~nv~I~G~G--~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~  194 (226)
                       .+||+|+|.|  +|||+|+.||....+     +. ..||+++.|.+|+|++|++++++|||+|++++ .|+|++|++++
T Consensus        67 -~~ni~i~G~g~g~IDG~G~~ww~~~~~-----~~-~~rP~~~~~~~~~nv~i~gi~~~nsp~w~~~i-~~~nv~i~~i~  138 (335)
T d1czfa_          67 -GEHITVTGASGHLINCDGARWWDGKGT-----SG-KKKPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDITFTDVT  138 (335)
T ss_dssp             -EESCEEEECTTCEEECCGGGTCCSCTT-----SS-SCCCCCEEEEEEETEEEESCEEECCSSCCEEE-ECSSEEEESCE
T ss_pred             -cceEEEEeCCCCEEcCCCHHHhccCCC-----CC-CCCceEEEEecceEEEEEeeEEEcCCceEEEE-eeeeEEEEeEE
Confidence             4899999965  999999999984322     22 68999999999999999999999999999998 59999999999


Q ss_pred             EECCC----CCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          195 IQAPG----TSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       195 i~~~~----~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      |.++.    .++||||||+++|+||+|+||+|++||
T Consensus       139 I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~tgD  174 (335)
T d1czfa_         139 INNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQD  174 (335)
T ss_dssp             EECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSS
T ss_pred             EECcCCCcCccCCCCceEecCCCeEEEEeeEEecCC
Confidence            99963    468999999999999999999999998

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=1.8e-34  Score=248.79  Aligned_cols=166  Identities=23%  Similarity=0.418  Sum_probs=140.0

Q ss_pred             cchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCcc
Q 047411           40 ADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVD  119 (226)
Q Consensus        40 ~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~  119 (226)
                      +||+++|++|+ ++|.+.+ +++|+||+|++|.+..+      ++ +.++.++|...+.  ..+|.    ++++.+.+ +
T Consensus         9 ~d~~~~i~~a~-~~C~~~~-~~~v~vPaG~~l~l~~l------~~-g~~v~~~g~~~~~--~~~~~----g~l~~~~g-~   72 (339)
T d1ia5a_           9 SNGASSASKSK-TSCSTIV-LSNVAVPSGTTLDLTKL------ND-GTHVIFSGETTFG--YKEWS----GPLISVSG-S   72 (339)
T ss_dssp             GGHHHHHHHHG-GGCSEEE-EESCEECTTCCEEECSC------CT-TCEEEEESEEEEC--CCCSC----CCSEEEEE-E
T ss_pred             cccHHHHHHHH-HhCcCCC-CCeEEECCCCeEeeecc------CC-CCEEEeeCCcccc--cCCcc----CCeEEEEe-e
Confidence            79999999999 7898877 78999999944544432      34 7888888876653  23465    56777765 8


Q ss_pred             ceEEEece--EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEEC
Q 047411          120 SLQIDGSG--TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA  197 (226)
Q Consensus       120 nv~I~G~G--~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~  197 (226)
                      ||+|+|.|  +|||+|+.||+....    ... ..||++|.|.+|+|++|+|++++|||+|++++..|++|+|+|++|.+
T Consensus        73 ni~i~G~g~g~IDG~G~~wW~~~~~----~~~-~~rP~~l~~~~~~nv~i~gitl~nsp~w~~~~~~s~nv~i~~v~I~~  147 (339)
T d1ia5a_          73 DLTITGASGHSINGDGSRWWDGEGG----NGG-KTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDN  147 (339)
T ss_dssp             SCEEEECTTCEEECCGGGTCSSCTT----TSS-SCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEEESCEEEC
T ss_pred             eEEEEecCCCeEeCCchhhhhcccC----CCC-CCCCeEEEEEecCCCEEeceEEEcCCceEEEEecccEEEEEEEEEec
Confidence            99999975  999999999984322    122 68999999999999999999999999999999999999999999999


Q ss_pred             CC----CCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          198 PG----TSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       198 ~~----~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +.    .++|+||||+++|+||+|+||+|.+||
T Consensus       148 ~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gD  180 (339)
T d1ia5a_         148 SDGDDNGGHNTDAFDIGTSTYVTISGATVYNQD  180 (339)
T ss_dssp             GGGTTTTCCSCCSEEEESCEEEEEESCEEECSS
T ss_pred             ccCCccCCCCCCccccCCCCeEEEeeeEEEcCC
Confidence            73    468999999999999999999999998

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=100.00  E-value=5.5e-34  Score=247.21  Aligned_cols=168  Identities=21%  Similarity=0.333  Sum_probs=137.7

Q ss_pred             chHHHHHHHHHHhcccCCCCCEEEecCCCeEEE-eeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCcc
Q 047411           41 DDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLV-HPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVD  119 (226)
Q Consensus        41 ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~-~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~  119 (226)
                      +|++|||+|| ++|.+.+ +++|+||+| +|+. ++  |    |+ +++|+++|++.++.....|     .+++.+. .+
T Consensus         6 ~d~~ai~~ai-~~C~~~~-~~~v~vPaG-~~l~~~~--l----~~-~~tl~~~g~~~~~~~~~~~-----~~~~~~~-~~   69 (349)
T d1hg8a_           6 TEYSGLATAV-SSCKNIV-LNGFQVPTG-KQLDLSS--L----QN-DSTVTFKGTTTFATTADND-----FNPIVIS-GS   69 (349)
T ss_dssp             SSGGGHHHHH-HHCSEEE-ECCCEECTT-CCEEETT--C----CT-TCEEEECSEEEECCCCCTT-----CCSEEEE-EE
T ss_pred             CCHHHHHHHH-HHccCCC-CCeEEECCC-ceEeCCC--C----CC-CCEEEEEeeEEeecccccc-----CCeEEEe-ee
Confidence            6788999999 6898877 889999999 7754 34  2    56 8999999988876554433     2344444 58


Q ss_pred             ceEEEece--EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEEC
Q 047411          120 SLQIDGSG--TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA  197 (226)
Q Consensus       120 nv~I~G~G--~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~  197 (226)
                      |++|+|.|  +|||+|+.||...... +.... ..||.++.+.+|+|++|+|++++|||+|++++.+|++++|+|++|.+
T Consensus        70 ni~I~G~G~g~IDG~G~~ww~~~~~~-~~~~~-~p~p~~i~~~~~~nv~i~~i~l~nsp~w~~~~~~~~nv~i~~i~I~~  147 (349)
T d1hg8a_          70 NITITGASGHVIDGNGQAYWDGKGSN-SNSNQ-KPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDN  147 (349)
T ss_dssp             SCEEEECTTCEEECCGGGTCCSCTTC-TTSCC-CCSEEEEEEEEESSEEEESCEEECCSSEEEEEESCEEEEEEEEEEEC
T ss_pred             eEEEEecCCCEEeCCChHHhcccccC-CCCCC-CCcceEEEEeccCCeEEEeeEEeCCCceEEEEeccceEEEEEEEEEC
Confidence            99999976  9999999999854321 11111 45677899999999999999999999999999999999999999988


Q ss_pred             CC------------CCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          198 PG------------TSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       198 ~~------------~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      +.            .++|+||||+++|+||+|+||+|++||
T Consensus       148 ~~~~~~~~~~~~~~~~~NtDGiDi~~s~nv~I~n~~i~~gD  188 (349)
T d1hg8a_         148 RAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQD  188 (349)
T ss_dssp             GGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSS
T ss_pred             CCcccccccccCccccCCCCeEeeCCCCeEEEEeeeecCCC
Confidence            43            468999999999999999999999998

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=100.00  E-value=1.5e-34  Score=249.13  Aligned_cols=166  Identities=24%  Similarity=0.459  Sum_probs=138.3

Q ss_pred             cchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCcc
Q 047411           40 ADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVD  119 (226)
Q Consensus        40 ~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~  119 (226)
                      .++++|||+|+ ++|.+.+ +++|+||+| +|+.    |.++ +. +.+|+++|++.+  +...|.    .+++.+.+..
T Consensus         5 ~~~~~~i~~ai-~~C~~~~-~~~v~VP~G-~~l~----l~~~-~~-g~~v~~~g~~~~--~~~~~~----g~~~~~~g~~   69 (336)
T d1nhca_           5 FTSASEASESI-SSCSDVV-LSSIEVPAG-ETLD----LSDA-AD-GSTITFEGTTSF--GYKEWK----GPLIRFGGKD   69 (336)
T ss_dssp             ESSHHHHHHHG-GGCSEEE-EESCEECTT-CCEE----CTTC-CT-TCEEEEESEEEE--CCCCSC----CCSEECCEES
T ss_pred             cCcHHHHHHHH-HHCcCCC-CCeEEECCC-CeEe----CCCC-CC-CCEEEEEEEEec--cccccc----CceEEEEEEE
Confidence            36899999999 7899877 889999999 7653    2222 33 678889998876  344576    6788887644


Q ss_pred             -ceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECC
Q 047411          120 -SLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAP  198 (226)
Q Consensus       120 -nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~  198 (226)
                       +|++.|.|+|||+|+.||+....    ..+ ..||+++.|.+|+|++|+|++++|||+|++++ .|+|++|+|++|.++
T Consensus        70 ~~i~~~G~G~IDG~G~~ww~~~~~----~~~-~~rP~~i~~~~~~nv~i~giti~nsp~~~i~i-~~~nv~i~nv~I~~~  143 (336)
T d1nhca_          70 LTVTMADGAVIDGDGSRWWDSKGT----NGG-KTKPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNS  143 (336)
T ss_dssp             CEEEECTTCEEECCGGGTCCSCTT----TSS-SCCCCCEEEEEEEEEEEESCEEECCSSCCEEE-EEEEEEEESCEEECT
T ss_pred             EEEEEeCCeEEeCCcHHHhccccc----CCC-CCCCeEEEEeccCCcEEEeEEEEcCCceEEEE-eeeEEEEEEEEEECc
Confidence             67777889999999999984321    122 67999999999999999999999999999998 599999999999997


Q ss_pred             C----CCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          199 G----TSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       199 ~----~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      .    ..+|+||||+++|+||+|+||+|++||
T Consensus       144 ~~~~~~~~NtDGidi~~s~nv~I~n~~i~~gD  175 (336)
T d1nhca_         144 DGDDNGGHNTDGFDISESTGVYISGATVKNQD  175 (336)
T ss_dssp             THHHHTCCSCCSEEECSCEEEEEESCEEESSS
T ss_pred             CCCccccCCCceEEcCCccCEeEecceEeecC
Confidence            5    358999999999999999999999998

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=99.98  E-value=2.3e-34  Score=251.79  Aligned_cols=186  Identities=10%  Similarity=0.032  Sum_probs=155.5

Q ss_pred             ecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCC--
Q 047411           31 DFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDD--  108 (226)
Q Consensus        31 dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~--  108 (226)
                      .|||+|++.+|+|+|||+|+.++|...+ +++|||||| +|+++++.+    ++ +++++++|.++.+.....|....  
T Consensus         2 ~~ga~p~~~~d~t~a~~~a~~~~~~~~~-~~vvy~PpG-~y~~g~~~~----~~-~~~~~~~g~~l~~~~~~~y~~~G~~   74 (373)
T d1ogmx2           2 PSGMIPHMTPDNTQTMTPGPINNGDWGA-KSILYFPPG-VYWMNQDQS----GN-SGKLGSNHIRLNSNTYWVYLAPGAY   74 (373)
T ss_dssp             CGGGSCCCCTTTEEECCSEEECTTTTCS-SSEEEECSE-EEEECBCTT----CC-BSCSSSCCEECCTTCCEEEECTTEE
T ss_pred             CCCccCCCCCCchHHhhhhhhhhcccCC-CCEEEECCc-eeEeCCeee----cC-ceEEEcCceEeccCceEEecCCCcE
Confidence            6999999999999999999546666656 889999999 999999887    56 88888777766665554443211  


Q ss_pred             CcceEEEeCccceEEEeceEEeCCCcccccccccc----cccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeC
Q 047411          109 KSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKI----NKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMG  184 (226)
Q Consensus       109 ~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~----~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~  184 (226)
                      ...++.+.+.+|++|+|.|+|||+|..||....+.    .....+ ..||+++.|.+|+|++|+|++++|||+|++++..
T Consensus        75 ~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~n~~i~giti~~s~~~~~~~~~  153 (373)
T d1ogmx2          75 VKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTS-LRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNG  153 (373)
T ss_dssp             EESCEEECCSSCEEEESSCEEECTTSCTTCBTTTTTBSCCCTTTB-CCSEEESCCCSSEEEEEESCEEECCSSCCEEECS
T ss_pred             EEeEEEecCcceEEEEcceEEcCCcceecccccccccccccCCcc-cCCceEEEEEcceEEEEeCEEEECCCeeEEEEcc
Confidence            13478888999999999999999999999853221    112333 6899999999999999999999999999999999


Q ss_pred             eeeEEEEeEEEEC-CCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          185 CIGVEFGFLSIQA-PGTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       185 s~~v~i~~~~i~~-~~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                      |++++++++++.+ +...+|+||||+  |++++|+||++++||
T Consensus       154 ~~~v~i~~~~i~~~~~~~~n~dgi~~--~~~~~i~~~~~~~gD  194 (373)
T d1ogmx2         154 NSGISSQISDYKQVGAFFFQTDGPEI--YPNSVVHDVFWHVND  194 (373)
T ss_dssp             SSCEEEEEEEEEEECCCSTTCCCCBC--CTTCEEEEEEEEESS
T ss_pred             CCeEEEEEEEEEecCCCCCCCeeeec--cCCEEEEeeEEecCC
Confidence            9999999999976 566799999999  679999999999998

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=99.95  E-value=4e-29  Score=214.17  Aligned_cols=159  Identities=21%  Similarity=0.340  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEE
Q 047411           44 MAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQI  123 (226)
Q Consensus        44 ~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I  123 (226)
                      .+.++|+ ++|++.+ +++|+||+| .|+.  |.+    .. +.+|+++|.+.+..  ..|.    .+++.+++ +||+|
T Consensus         6 ~~~a~~i-~~Cs~~~-~~~v~VPaG-~~l~--L~~----~~-g~~v~f~G~~~~~~--~~w~----gpl~~~~g-~~i~i   68 (333)
T d1k5ca_           6 VDDAKDI-AGCSAVT-LNGFTVPAG-NTLV--LNP----DK-GATVTMAGDITFAK--TTLD----GPLFTIDG-TGINF   68 (333)
T ss_dssp             TTGGGGC-TTCSEEE-ECCEEECTT-CCEE--ECC----CT-TCEEEECSCEEECC--CCSC----SCSEEEEE-EEEEE
T ss_pred             hHhhhhH-hhCcCCC-CCeEEECCC-CEEE--Eec----cc-CCEEEEeeeEeccc--cccc----CCEEEEEe-ceEEE
Confidence            3456788 6899877 889999999 5542  223    23 78888899877643  3465    57888875 99999


Q ss_pred             Eec-eEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCee-eEEEEeEEEECC---
Q 047411          124 DGS-GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCI-GVEFGFLSIQAP---  198 (226)
Q Consensus       124 ~G~-G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~-~v~i~~~~i~~~---  198 (226)
                      +|. |+|||+|+.||....+   . .. ..||+++.+..+++ .|++++++|+|+|++++..|+ +++++|++|.+.   
T Consensus        69 ~G~ggvIDG~G~~wW~~~~~---~-~~-~~rP~~~~~~~~~~-~i~~i~~~nsp~~~~~i~~~~~~v~i~nv~I~~~~i~  142 (333)
T d1k5ca_          69 VGADHIFDGNGALYWDGKGT---N-NG-THKPHPFLKIKGSG-TYKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAGD  142 (333)
T ss_dssp             ECTTCEEECCGGGTCCSCTT---T-SS-SCCCCCSEEEEEEE-EEESCEEESCSSCCEEEEEEEEEEEEESCEEECGGGG
T ss_pred             EcCCCeEeCCchHHhcccCC---C-CC-CCCCeEEEEEecCc-eEEEEEEEECCceEEEEecccCcEEEEeEEEEeeecC
Confidence            995 4899999999985432   1 11 57999888877665 599999999999999999886 899999998874   


Q ss_pred             --CCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411          199 --GTSPNTDGIHIQASSNVYIHNAHISNGT  226 (226)
Q Consensus       199 --~~~~ntDGi~~~~s~~v~I~n~~i~~gD  226 (226)
                        ..+|||||||++ |+||+|+||+|++||
T Consensus       143 ~~~~~~NTDGidi~-s~nV~I~n~~i~~gD  171 (333)
T d1k5ca_         143 TKNLGHNTDGFDVS-ANNVTIQNCIVKNQD  171 (333)
T ss_dssp             GGGCCCSCCSEEEE-CSSEEEESCEEESSS
T ss_pred             CCccCCCcceEeEe-cceEEEEecEEecCC
Confidence              357999999995 799999999999998

>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: iota-carrageenase
domain: iota-carrageenase
species: Alteromonas sp., atcc 43554 [TaxId: 232]

Probab=99.43  E-value=4.6e-12  Score=104.35  Aligned_cols=129  Identities=26%  Similarity=0.447  Sum_probs=95.7

Q ss_pred             ccceEE-eeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe-eEEEeeCC
Q 047411           23 NADEFN-VLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS-GSIIAPNG  100 (226)
Q Consensus        23 ~~~~~~-v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~-g~l~~~~~  100 (226)
                      .+..++ |.||||.++...||+.++|.||+++....+ |++|++|.| +|.+..|..    || |++|+++ +++.-|.-
T Consensus        18 ~~~~~~lv~d~g~n~nDt~dDs~~L~~Ain~~sr~~~-GG~l~lp~g-~y~l~~I~m----~S-NVhievE~~~viyPT~   90 (464)
T d1h80a_          18 QDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPN-GGTLLIPNG-TYHFLGIQM----KS-NVHIRVESDVIIKPTW   90 (464)
T ss_dssp             CSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHTSTT-CEEEEECSS-EEEECSEEC----CT-TEEEEECTTCEEEECC
T ss_pred             hhccccchhhcccCCCcccCcHHHHHHHHHHhhcCCC-CcEEEEeCC-cEEEEEEee----cc-ceEEEEecCeEEeecC
Confidence            344566 678999999999999999999988777677 999999999 999998888    68 9999999 65443332


Q ss_pred             CCCcCCCCCcceEEEe---CccceEEEece---EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeC
Q 047411          101 PNEWKEDDKSKWFDIQ---SVDSLQIDGSG---TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFIN  174 (226)
Q Consensus       101 ~~~~~~~~~~~~i~~~---~~~nv~I~G~G---~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~n  174 (226)
                      ..+-+  + +.+|.+.   .++|+.|+|.|   +||-.+..               ......+.+-+++|+.|+|++|++
T Consensus        91 ~~d~K--N-hrlF~fg~~n~veN~si~g~G~~FtID~~~n~---------------~kN~~~v~lg~V~nfkIsnf~I~D  152 (464)
T d1h80a_          91 NGDGK--N-HRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSR---------------DKNLAVFKLGDVRNYKISNFTIDD  152 (464)
T ss_dssp             CTTCS--C-EEEEEESSSSCEEEEEEEECTTCEEEECTTCS---------------CCBEEEEEECSEEEEEEEEEEEEC
T ss_pred             CCCcc--c-ceeeeecccceeeeEEEEecCCcEEEEcccCC---------------CCceeeEEeeeeeeeeeeeeeecc
Confidence            21111  1 3466663   37789999864   66644311               122357888899999999999987


Q ss_pred             CC
Q 047411          175 SP  176 (226)
Q Consensus       175 s~  176 (226)
                      -.
T Consensus       153 nk  154 (464)
T d1h80a_         153 NK  154 (464)
T ss_dssp             CS
T ss_pred             Cc
Confidence            63

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=98.49  E-value=3.9e-07  Score=76.79  Aligned_cols=113  Identities=20%  Similarity=0.292  Sum_probs=82.4

Q ss_pred             cEEEEEee--EEEeeCCCCCcCCC------CCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEE
Q 047411           86 DITIMLSG--SIIAPNGPNEWKED------DKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVL  157 (226)
Q Consensus        86 ~v~l~~~g--~l~~~~~~~~~~~~------~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i  157 (226)
                      ++++...|  +|-..- ..-|...      ....+|.+.+++|++|+|- ++.  ....|                  .+
T Consensus        73 ni~i~G~g~g~IDG~G-~~wW~~~~~~~~~~rP~~l~~~~~~nv~i~gi-tl~--nsp~w------------------~~  130 (339)
T d1ia5a_          73 DLTITGASGHSINGDG-SRWWDGEGGNGGKTKPKFFAAHSLTNSVISGL-KIV--NSPVQ------------------VF  130 (339)
T ss_dssp             SCEEEECTTCEEECCG-GGTCSSCTTTSSSCCCCCEEEEEEEEEEEESC-EEE--CCSSC------------------CE
T ss_pred             eEEEEecCCCeEeCCc-hhhhhcccCCCCCCCCeEEEEEecCCCEEece-EEE--cCCce------------------EE
Confidence            88888864  776421 1223321      1234889999999999983 222  11122                  47


Q ss_pred             EEeecCcEEEeeeEEeCCCc--------eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          158 KFDRCNNLRMNNMNFINSPQ--------THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       158 ~~~~~~nv~i~~i~i~ns~~--------~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      .+.+|++++|+++++.+++.        -++++..|+||+|+|+.|.+     ..|.|-+-+++|++|+||++..|
T Consensus       131 ~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~-----gDDcIaiks~~ni~i~n~~c~~g  201 (339)
T d1ia5a_         131 SVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYN-----QDDCVAVNSGENIYFSGGYCSGG  201 (339)
T ss_dssp             EEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESS
T ss_pred             EEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEc-----CCCeEEecCccEEEEEEeEEecc
Confidence            88999999999999998531        47999999999999999997     45888888888999999887754

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=98.45  E-value=4.4e-07  Score=76.76  Aligned_cols=113  Identities=12%  Similarity=0.156  Sum_probs=83.0

Q ss_pred             cEEEEEee--EEEeeCCCCCcCC------C--CCcc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCc
Q 047411           86 DITIMLSG--SIIAPNGPNEWKE------D--DKSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAP  154 (226)
Q Consensus        86 ~v~l~~~g--~l~~~~~~~~~~~------~--~~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp  154 (226)
                      ++++...|  +|-..- ..-|..      .  ..++ ++.+...+|++|+|-=..+   ..+                  
T Consensus        70 ni~I~G~G~g~IDG~G-~~ww~~~~~~~~~~~~p~p~~i~~~~~~nv~i~~i~l~n---sp~------------------  127 (349)
T d1hg8a_          70 NITITGASGHVIDGNG-QAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQN---WPV------------------  127 (349)
T ss_dssp             SCEEEECTTCEEECCG-GGTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESCEEEC---CSS------------------
T ss_pred             eEEEEecCCCEEeCCC-hHHhcccccCCCCCCCCcceEEEEeccCCeEEEeeEEeC---CCc------------------
Confidence            88888865  776421 112321      1  1133 5677888999999842222   112                  


Q ss_pred             eEEEEeecCcEEEeeeEEeCCCc----------------eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEE
Q 047411          155 TVLKFDRCNNLRMNNMNFINSPQ----------------THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIH  218 (226)
Q Consensus       155 ~~i~~~~~~nv~i~~i~i~ns~~----------------~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~  218 (226)
                      ..+.+.+|+|++|+|+++.+++.                =++.+..|++|+|+|+.|.+     ..|.|-+-+++||+|+
T Consensus       128 w~~~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~~s~nv~I~n~~i~~-----gDD~iaik~~~ni~i~  202 (349)
T d1hg8a_         128 HCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYN-----QDDCVAVTSGTNIVVS  202 (349)
T ss_dssp             EEEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEEC-----SSCSEEESSEEEEEEE
T ss_pred             eEEEEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeCCCCeEEEEeeeecC-----CCCceEeccccceEEE
Confidence            24888899999999999998642                35899999999999999997     5699999999999999


Q ss_pred             eeEEecC
Q 047411          219 NAHISNG  225 (226)
Q Consensus       219 n~~i~~g  225 (226)
                      ||++..|
T Consensus       203 n~~~~~g  209 (349)
T d1hg8a_         203 NMYCSGG  209 (349)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            9999764

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=98.30  E-value=2.3e-06  Score=71.86  Aligned_cols=112  Identities=18%  Similarity=0.313  Sum_probs=79.8

Q ss_pred             cEEEEEee--EEEeeCCCCCcCCC----CCc-ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEE
Q 047411           86 DITIMLSG--SIIAPNGPNEWKED----DKS-KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLK  158 (226)
Q Consensus        86 ~v~l~~~g--~l~~~~~~~~~~~~----~~~-~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~  158 (226)
                      ++++...|  +|-..- ..-|...    ..+ .++.+.+++|++|+|- ++.  ...+|                  .+.
T Consensus        69 ni~i~G~g~g~IDG~G-~~ww~~~~~~~~~rP~~~~~~~~~nv~i~gi-~~~--nsp~w------------------~~~  126 (335)
T d1czfa_          69 HITVTGASGHLINCDG-ARWWDGKGTSGKKKPKFFYAHGLDSSSITGL-NIK--NTPLM------------------AFS  126 (335)
T ss_dssp             SCEEEECTTCEEECCG-GGTCCSCTTSSSCCCCCEEEEEEETEEEESC-EEE--CCSSC------------------CEE
T ss_pred             eEEEEeCCCCEEcCCC-HHHhccCCCCCCCCceEEEEecceEEEEEee-EEE--cCCce------------------EEE
Confidence            88888764  776421 1223321    123 4788888999999983 221  11122                  256


Q ss_pred             EeecCcEEEeeeEEeCCCc--------eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          159 FDRCNNLRMNNMNFINSPQ--------THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       159 ~~~~~nv~i~~i~i~ns~~--------~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      + +|+|++|+++++.+.+.        -++++..|+||+|+|+.|.+     ..|+|-+-++++++|+||.+..|
T Consensus       127 i-~~~nv~i~~i~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~t-----gDDcIaiks~~ni~i~n~~c~~~  195 (335)
T d1czfa_         127 V-QANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHN-----QDDCLAVNSGENIWFTGGTCIGG  195 (335)
T ss_dssp             E-ECSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESS
T ss_pred             E-eeeeEEEEeEEEECcCCCcCccCCCCceEecCCCeEEEEeeEEec-----CCceEEecCceEEEEEEEEEECC
Confidence            6 59999999999998532        45999999999999999997     56889998889999999877654

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=98.26  E-value=2.6e-06  Score=72.58  Aligned_cols=89  Identities=10%  Similarity=0.238  Sum_probs=67.5

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc----eEEEEeCee
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ----THVTVMGCI  186 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~----~~i~~~~s~  186 (226)
                      .+|.+.+++|++|+|- +|...  ..|                  .+.+..|++++|+++++.+...    -++.+..|+
T Consensus       152 ~~i~~~~~~nv~i~~i-ti~ns--~~~------------------~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~  210 (376)
T d1bhea_         152 RLIQINKSKNFTLYNV-SLINS--PNF------------------HVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSK  210 (376)
T ss_dssp             CSEEEESCEEEEEEEE-EEECC--SSC------------------SEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCE
T ss_pred             eEEEEEecccEEEEee-EEecC--Cce------------------EEEEeCCceEEEEeEeccCCccCCCcceeeccccc
Confidence            3799999999999983 33211  112                  3778899999999999997542    368899999


Q ss_pred             eEEEEeEEEECCCCCCCCCeEEec------CeecEEEEeeEEecC
Q 047411          187 GVEFGFLSIQAPGTSPNTDGIHIQ------ASSNVYIHNAHISNG  225 (226)
Q Consensus       187 ~v~i~~~~i~~~~~~~ntDGi~~~------~s~~v~I~n~~i~~g  225 (226)
                      ||+|+|+.|.+     ..|+|-+.      .|+||+|+||++..|
T Consensus       211 nv~I~n~~i~~-----gDD~i~~ks~~~~~~~~ni~i~n~~~~~~  250 (376)
T d1bhea_         211 NITIAYSNIAT-----GDDNVAIKAYKGRAETRNISILHNDFGTG  250 (376)
T ss_dssp             EEEEESCEEEC-----SSCSEEEEECTTSCCEEEEEEEEEEECSS
T ss_pred             eEEEEeceeec-----CCCceeeecccCCCCcceEEEEeeEEecC
Confidence            99999999986     45666653      378888888888654

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=98.14  E-value=2.9e-06  Score=72.21  Aligned_cols=133  Identities=13%  Similarity=0.087  Sum_probs=89.0

Q ss_pred             CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCC----------C-C--Cc-ceEEEeCccceEEEe
Q 047411           60 SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKE----------D-D--KS-KWFDIQSVDSLQIDG  125 (226)
Q Consensus        60 g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~----------~-~--~~-~~i~~~~~~nv~I~G  125 (226)
                      ...+|+++| .|..+.+...+  .+ +++|...|+|.... ...|..          . .  .+ .++.+.+++|++|+|
T Consensus        64 ~~~~y~~~G-~~~~~~i~~~~--~~-nv~I~G~G~idG~G-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~g  138 (373)
T d1ogmx2          64 TYWVYLAPG-AYVKGAIEYFT--KQ-NFYATGHGILSGEN-YVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVG  138 (373)
T ss_dssp             CCEEEECTT-EEEESCEEECC--SS-CEEEESSCEEECTT-SCTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEES
T ss_pred             ceEEecCCC-cEEEeEEEecC--cc-eEEEEcceEEcCCc-ceecccccccccccccCCcccCCceEEEEEcceEEEEeC
Confidence            457899999 88877777654  35 99998889987532 112221          0 0  12 356778899999998


Q ss_pred             ceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEE---EeCeeeEEEEeEEEECCCCCC
Q 047411          126 SGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVT---VMGCIGVEFGFLSIQAPGTSP  202 (226)
Q Consensus       126 ~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~---~~~s~~v~i~~~~i~~~~~~~  202 (226)
                      - ++.-.  ..|                  .+.+..|++++++++++++.+.|...   ++-|++++|+|+.+.+     
T Consensus       139 i-ti~~s--~~~------------------~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~~~~~~i~~~~~~~-----  192 (373)
T d1ogmx2         139 P-TINAP--PFN------------------TMDFNGNSGISSQISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHV-----  192 (373)
T ss_dssp             C-EEECC--SSC------------------CEEECSSSCEEEEEEEEEEECCCSTTCCCCBCCTTCEEEEEEEEE-----
T ss_pred             E-EEECC--Cee------------------EEEEccCCeEEEEEEEEEecCCCCCCCeeeeccCCEEEEeeEEec-----
Confidence            3 33211  112                  37778899999999999876654211   2237788999998886     


Q ss_pred             CCCeEEecCeecEEEEeeEEec
Q 047411          203 NTDGIHIQASSNVYIHNAHISN  224 (226)
Q Consensus       203 ntDGi~~~~s~~v~I~n~~i~~  224 (226)
                      ..|+|-+.+ .+++|+||++..
T Consensus       193 gDD~i~~~s-~~i~v~n~~~~~  213 (373)
T d1ogmx2         193 NDDAIKIYY-SGASVSRATIWK  213 (373)
T ss_dssp             SSCSEECCS-TTCEEEEEEEEE
T ss_pred             CCCEEEecC-CCEEEEEEEEEC
Confidence            457887754 688888888764

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=98.13  E-value=2.9e-06  Score=71.20  Aligned_cols=88  Identities=17%  Similarity=0.278  Sum_probs=66.4

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc--------eEEEE
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ--------THVTV  182 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~--------~~i~~  182 (226)
                      .++.+.+++|++|+|-=..+   ..+|                  .+.+ +|+|++|+++++.+++.        -++++
T Consensus       101 ~~i~~~~~~nv~i~giti~n---sp~~------------------~i~i-~~~nv~i~nv~I~~~~~~~~~~~NtDGidi  158 (336)
T d1nhca_         101 KFMYIHDVEDSTFKGINIKN---TPVQ------------------AISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDI  158 (336)
T ss_dssp             CCEEEEEEEEEEEESCEEEC---CSSC------------------CEEE-EEEEEEEESCEEECTTHHHHTCCSCCSEEE
T ss_pred             eEEEEeccCCcEEEeEEEEc---CCce------------------EEEE-eeeEEEEEEEEEECcCCCccccCCCceEEc
Confidence            47899999999999832221   1122                  2455 59999999999998753        37999


Q ss_pred             eCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411          183 MGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       183 ~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      ..|++|+|+|+.|.+     ..|.|.+.++++++|+|+.+..|
T Consensus       159 ~~s~nv~I~n~~i~~-----gDDcIaik~g~ni~i~n~~c~~~  196 (336)
T d1nhca_         159 SESTGVYISGATVKN-----QDDCIAINSGESISFTGGTCSGG  196 (336)
T ss_dssp             CSCEEEEEESCEEES-----SSEEEEESSEEEEEEESCEEESS
T ss_pred             CCccCEeEecceEee-----cCCcEEeeccceEEEEEeeeccc
Confidence            999999999999996     45788887777888888766543

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=98.07  E-value=2.7e-06  Score=71.85  Aligned_cols=66  Identities=15%  Similarity=0.178  Sum_probs=53.5

Q ss_pred             EEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEEC-CCCCCCCCeEEecCeecEEEEeeEEec
Q 047411          158 KFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA-PGTSPNTDGIHIQASSNVYIHNAHISN  224 (226)
Q Consensus       158 ~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~-~~~~~ntDGi~~~~s~~v~I~n~~i~~  224 (226)
                      ....++++++.+.+.... .|++++..|+||.|+|++|+. +...++.|||.+++|+||+|++|.+.-
T Consensus        84 i~~~~~~i~i~G~~~~~~-~~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~  150 (353)
T d1o88a_          84 IKEFTKGITIIGANGSSA-NFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFA  150 (353)
T ss_dssp             EESBCSCEEEEECTTCCB-SSEEEEESCCSEEEESCEEECCSCGGGTCCSEEEESCCSEEEESCEEEC
T ss_pred             EEecCCCEEEEcCCCccc-cceEEEeccceEEEeCcEEecCCCCCCCCcEEEEecccEEEEEccEEec
Confidence            345677888888877765 489999999999999999986 445578899999999999999998864

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=97.87  E-value=3.6e-05  Score=66.76  Aligned_cols=129  Identities=12%  Similarity=0.028  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCc-CccEEEEEe--eEEEeeCCCCCcCCCCCcceEEEeCc
Q 047411           42 DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCK-SSDITIMLS--GSIIAPNGPNEWKEDDKSKWFDIQSV  118 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~k-s~~v~l~~~--g~l~~~~~~~~~~~~~~~~~i~~~~~  118 (226)
                      ..+.||+||+ ++++   |++|+|++| +|.-..+.+.+... +..++|.-+  |+....          ....+.+.+ 
T Consensus         5 ~~~tiq~Ai~-~a~p---GDtI~l~~G-tY~~~~i~~~~~Gt~~~pIti~a~~~g~v~i~----------G~s~i~i~g-   68 (481)
T d1ofla_           5 SNETLYQVVK-EVKP---GGLVQIADG-TYKDVQLIVSNSGKSGLPITIKALNPGKVFFT----------GDAKVELRG-   68 (481)
T ss_dssp             SHHHHHHHHH-HCCT---TCEEEECSE-EEETCEEEECCCCBTTBCEEEEESSTTSEEEE----------ESCEEEECS-
T ss_pred             ChHHHHHHHH-hCCC---CCEEEECCC-EEEcCEEEeccCcccCCCEEEEeCCCCceEEc----------CCCeEEEEe-
Confidence            4678999995 5666   899999999 99754555532100 124555443  111110          012344433 


Q ss_pred             cceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc---------eEEEEeCeeeEE
Q 047411          119 DSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ---------THVTVMGCIGVE  189 (226)
Q Consensus       119 ~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~---------~~i~~~~s~~v~  189 (226)
                      ++++|+| -+|.+.+...-.        .   ......+....+.+++|+++.+.+.-.         ..+....+.+++
T Consensus        69 ~~v~i~G-l~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~  136 (481)
T d1ofla_          69 EHLILEG-IWFKDGNRAIQA--------W---KSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCR  136 (481)
T ss_dssp             SSEEEES-CEEEEECCCGGG--------C---CTTSCCSEEECSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCE
T ss_pred             CCEEEeC-eEEECCCCccce--------e---eccCCceEEeEeecceEeeeEeecccccccceeccceeEEEeeccceE
Confidence            5666666 244433221100        0   011122344557788888888876432         122234566889


Q ss_pred             EEeEEEECC
Q 047411          190 FGFLSIQAP  198 (226)
Q Consensus       190 i~~~~i~~~  198 (226)
                      |+++.+...
T Consensus       137 I~~n~~~~~  145 (481)
T d1ofla_         137 IDHCSFTDK  145 (481)
T ss_dssp             EESCEEECC
T ss_pred             EECceEecC
Confidence            999999874

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.68  E-value=0.00022  Score=59.26  Aligned_cols=171  Identities=12%  Similarity=0.113  Sum_probs=87.9

Q ss_pred             ccccceEEeeecCcc-CCCCcchHH--HHHHHHHHhcccCCCCCEEEecCCCeEEEe-eee------ee--CCCcCccEE
Q 047411           21 RINADEFNVLDFGAA-GDGNADDSM--AFIKAWNNTCSATAKSPTMVIPKGKTFLVH-PIT------FT--GPCKSSDIT   88 (226)
Q Consensus        21 ~~~~~~~~v~dyGA~-~dg~~ddt~--aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~-~l~------l~--~~~ks~~v~   88 (226)
                      ...++++.|..-|.. +||. .+.|  -||+|++ ++++   |.+|+|.+| +|... .+.      +.  +. .+..++
T Consensus        11 ~~~~~~~YVs~~Gsd~~~Gs-~~~p~~tIq~Ai~-~a~~---GDtI~v~~G-tY~~~~~~~~~~~~~~~~~G~-~~~~i~   83 (400)
T d1ru4a_          11 ISTKRIYYVAPNGNSSNNGS-SFNAPMSFSAAMA-AVNP---GELILLKPG-TYTIPYTQGKGNTITFNKSGK-DGAPIY   83 (400)
T ss_dssp             CCCSCEEEECTTCCTTCCSS-STTSCBCHHHHHH-HCCT---TCEEEECSE-EEECCCBTTBCCCEEECCCCB-TTBCEE
T ss_pred             cccCCeEEECCCCcCCCCCC-ccccHHHHHHHHH-hCCC---cCEEEEcCc-eeecceeecCceEEEEecCCC-CCCeEE
Confidence            345788999865553 3453 3444  3999995 5555   889999999 99743 111      10  00 011233


Q ss_pred             EEEe--e--EEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCc
Q 047411           89 IMLS--G--SIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNN  164 (226)
Q Consensus        89 l~~~--g--~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~n  164 (226)
                      +.-.  +  ++........+.  .....+.+.+ ++++|++ ..+.+..   +                 . ..+....+
T Consensus        84 i~~~~~~~~vi~~~~~~~~~~--~~~~~~~i~~-~~~~i~~-~~~~~~~---~-----------------~-~~~~~~~~  138 (400)
T d1ru4a_          84 VAAANCGRAVFDFSFPDSQWV--QASYGFYVTG-DYWYFKG-VEVTRAG---Y-----------------Q-GAYVIGSH  138 (400)
T ss_dssp             EEEGGGCCEEEECCCCTTCCC--TTCCSEEECS-SCEEEES-EEEESCS---S-----------------C-SEEECSSS
T ss_pred             EecCCCCeeEEeCCccccccc--cccceEEEec-CcEEEec-ceeecCc---c-----------------e-eeeecccc
Confidence            3222  1  111111111111  1122344443 5666666 2333221   0                 0 12223567


Q ss_pred             EEEeeeEEeCCCceEEEEeC-eeeEEEEeEEEECCCC----CCC--CCeEEecCeecEEEEeeEEe
Q 047411          165 LRMNNMNFINSPQTHVTVMG-CIGVEFGFLSIQAPGT----SPN--TDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       165 v~i~~i~i~ns~~~~i~~~~-s~~v~i~~~~i~~~~~----~~n--tDGi~~~~s~~v~I~n~~i~  223 (226)
                      ..|+++++.+....++.+.. .....+.++.+.....    ..+  ..++....+.+..|++|.+.
T Consensus       139 ~~i~n~~i~~~~~~g~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (400)
T d1ru4a_         139 NTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAW  204 (400)
T ss_dssp             CEEESCEEESCSSCSEEECTTCCSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEE
T ss_pred             cccccceEecCCcceEEEeccccccEEEEeeEEeccccccccccceeeeEEecccccceeecceee
Confidence            77788888877666666543 3445666666655321    122  33455556678888888875

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=97.64  E-value=0.00017  Score=61.88  Aligned_cols=87  Identities=10%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc---eEEEEeCeee
Q 047411          111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ---THVTVMGCIG  187 (226)
Q Consensus       111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~---~~i~~~~s~~  187 (226)
                      ..+.+.+++|++|+|--.++.   ..|                  .+.+.+|++++|+|+++.....   -++++.. .|
T Consensus       128 ~~l~~~~~~n~~i~git~~ns---p~~------------------~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~~-sn  185 (422)
T d1rmga_         128 RILRLTDVTHFSVHDIILVDA---PAF------------------HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWG-SN  185 (422)
T ss_dssp             EEEEEEEEEEEEEEEEEEECC---SSC------------------SEEEEEEEEEEEEEEEEECCSSTTCCSEEEEE-EE
T ss_pred             cEEEEEeeeeeEEECcEecCC---Cce------------------EEEEeccccEEEEeeEEcCCCCCccceEeecc-cE
Confidence            478888899999998322221   111                  2677889999999999985422   2677754 57


Q ss_pred             EEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEec
Q 047411          188 VEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       188 v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~  224 (226)
                      ++|+|+.|.+     ..|+|-+. .|+||+|+|++...
T Consensus       186 v~I~n~~i~~-----gDDcIaiks~s~nI~i~n~~c~~  218 (422)
T d1rmga_         186 IWVHDVEVTN-----KDECVTVKSPANNILVESIYCNW  218 (422)
T ss_dssp             EEEEEEEEES-----SSEEEEEEEEEEEEEEEEEEEES
T ss_pred             EEEEeeEEEc-----CCCccccCCCCccEEEEeeEEcc
Confidence            8999998886     34677664 37777777776654

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=97.58  E-value=0.00041  Score=57.93  Aligned_cols=170  Identities=9%  Similarity=0.045  Sum_probs=95.9

Q ss_pred             cccceEEeeecCc----cCCCCcchHHHHHHHHHHhcccCCCCCEEEecC-CCeEEE-eeeeeeCCCcCccEEEEEe---
Q 047411           22 INADEFNVLDFGA----AGDGNADDSMAFIKAWNNTCSATAKSPTMVIPK-GKTFLV-HPITFTGPCKSSDITIMLS---   92 (226)
Q Consensus        22 ~~~~~~~v~dyGA----~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~-G~tY~~-~~l~l~~~~ks~~v~l~~~---   92 (226)
                      ..++++.|+..--    .+.|      .|+.|++ +  + + ..+|+|-. | +-.+ .+|.+    +| ++||...   
T Consensus        36 ~gG~v~~Vt~l~D~~~~~g~G------sLr~a~~-~--~-~-pr~IvF~vsg-~I~l~~~L~v----~s-n~TI~G~ga~   98 (346)
T d1pxza_          36 KGGDFYTVTSTDDNPVNPTPG------TLRYGAT-R--E-K-ALWIIFSQNM-NIKLKMPLYV----AG-HKTIDGRGAD   98 (346)
T ss_dssp             TTSEEEEECCCCCCTTSCCTT------SHHHHHH-C--S-S-CEEEEESSCE-EECCSSCEEC----CS-SEEEECTTSC
T ss_pred             CCceEEEecChhhccccCCCc------cHHHHhh-C--C-C-CeEEEEeccE-EEeccceEEe----CC-CceEEccCCC
Confidence            3467888886421    0222      3888884 2  2 2 45666654 5 5555 36666    46 8887553   


Q ss_pred             eEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEe-CCCcc--ccc-cccc-ccccCCcccCCceEEEEeecCcEEE
Q 047411           93 GSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTID-GRGKA--WWD-ISCK-INKKEGCVKLAPTVLKFDRCNNLRM  167 (226)
Q Consensus        93 g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~id-G~G~~--~~~-~~~~-~~~~~~~~~~rp~~i~~~~~~nv~i  167 (226)
                      +.+..           .+..+.+.+.+||.|+.. +|. +....  ++. .... .....   ....-++.+.+++++.|
T Consensus        99 ~~i~~-----------~G~~i~i~~~~NVIirnl-~i~~~~~~~~~~~~~~~~~~~~~~~---~~~gDai~i~~s~nvwI  163 (346)
T d1pxza_          99 VHLGN-----------GGPCLFMRKVSHVILHSL-HIHGCNTSVLGDVLVSESIGVEPVH---AQDGDAITMRNVTNAWI  163 (346)
T ss_dssp             EEEET-----------TSCCEEEESCEEEEEESC-EEECCCCCCSEEEEEETTTEEEEEC---CCCCCSEEEESCEEEEE
T ss_pred             ceEee-----------ecceEEEecCCEEEEece-EEecCcccCCcccccccccCccccc---cCCCceeeeecCceEEE
Confidence            22221           123466667778888774 332 22111  110 0000 00000   12234688899999999


Q ss_pred             eeeEEeCCCceEEEEe-CeeeEEEEeEEEECCCCC---CCCCeEEecCeecEEEEeeEEe
Q 047411          168 NNMNFINSPQTHVTVM-GCIGVEFGFLSIQAPGTS---PNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       168 ~~i~i~ns~~~~i~~~-~s~~v~i~~~~i~~~~~~---~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      +.++|.+...-.+.+. .+++|+|+++.+......   ...|.-...+-.+|+++++++.
T Consensus       164 DH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~  223 (346)
T d1pxza_         164 DHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFG  223 (346)
T ss_dssp             ESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEEC
T ss_pred             ECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccC
Confidence            9999999988778765 589999999998763210   1111111123357999998774

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=97.44  E-value=0.00075  Score=56.42  Aligned_cols=68  Identities=16%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             EEEEeecCcEEEeeeEEeCCC---------------ceEEEEeCeeeEEEEeEEEECCCCC------------CCCCe-E
Q 047411          156 VLKFDRCNNLRMNNMNFINSP---------------QTHVTVMGCIGVEFGFLSIQAPGTS------------PNTDG-I  207 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~---------------~~~i~~~~s~~v~i~~~~i~~~~~~------------~ntDG-i  207 (226)
                      .|.|.+++||.|++++|+...               .-.+.+..+++|.|++|.+....+.            ...|| +
T Consensus        97 gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~dg~~  176 (355)
T d1pcla_          97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL  176 (355)
T ss_pred             EEEEEccccEEEEeeEeecCcccCCccccCCCcCccCceEEecCCccEEEECcccccCccccccccccccccccccccee
Confidence            466667777777777776431               1246666777777777776643210            11244 2


Q ss_pred             Eec-CeecEEEEeeEEe
Q 047411          208 HIQ-ASSNVYIHNAHIS  223 (226)
Q Consensus       208 ~~~-~s~~v~I~n~~i~  223 (226)
                      |+. .+++|+|.+|.|.
T Consensus       177 d~~~~s~~vTiS~~~~~  193 (355)
T d1pcla_         177 DIKKGSDYVTISYSRFE  193 (355)
T ss_pred             eeccceeeEEEeeeecC
Confidence            332 3567777777664

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.10  E-value=0.00082  Score=55.95  Aligned_cols=45  Identities=13%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           42 DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      +-..||+||+ +++...+.-+|+|.+| +|.-. |.++   |+ +++|..++
T Consensus        17 ~f~TIq~AI~-a~p~~~~~~vI~I~~G-~Y~E~-V~I~---k~-~itl~G~~   61 (342)
T d1qjva_          17 TFKTIADAIA-SAPAGSTPFVILIKNG-VYNER-LTIT---RN-NLHLKGES   61 (342)
T ss_dssp             CBSSHHHHHH-TSCSSSSCEEEEECSE-EECCC-EEEC---ST-TEEEEESC
T ss_pred             CchhHHHHHH-hCccCCceEEEEEcCe-EEEEE-EEEc---CC-CeEEEEcC
Confidence            5667999995 5655221236899999 99753 5554   56 88888763

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=96.88  E-value=0.0013  Score=55.11  Aligned_cols=64  Identities=16%  Similarity=0.092  Sum_probs=45.5

Q ss_pred             EEeecCcEEEeeeEEeCCC-c-----eEEEEeCeeeEEEEeEEEECCCCCCCCCeE-Ee-cCeecEEEEeeEEecC
Q 047411          158 KFDRCNNLRMNNMNFINSP-Q-----THVTVMGCIGVEFGFLSIQAPGTSPNTDGI-HI-QASSNVYIHNAHISNG  225 (226)
Q Consensus       158 ~~~~~~nv~i~~i~i~ns~-~-----~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi-~~-~~s~~v~I~n~~i~~g  225 (226)
                      .+.+++||.|++++|++.. .     -.+.+..++||.|++|.+.-.    -.|++ +. ..+++|+|.+|.|..+
T Consensus       128 ~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~s~nvwIDH~s~s~~----~d~~~~~~~~~s~~vTvs~~~f~~~  199 (359)
T d1qcxa_         128 VVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARI----GRQHIVLGTSADNRVTISYSLIDGR  199 (359)
T ss_dssp             EETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEE----SSCSEEECSSCCEEEEEESCEEECB
T ss_pred             EEeCCccEEEeCeEEecCCCCCCCCCCeEEeeCCCCEEEEeeecccc----CCCceEeeccCCCceEeeccEeccC
Confidence            3457889999999998643 2     267888899999999998742    22455 33 3467888888888643

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=96.78  E-value=0.001  Score=55.65  Aligned_cols=60  Identities=17%  Similarity=0.204  Sum_probs=37.7

Q ss_pred             eecCcEEEeeeEEeCCCc------eEEEEeCeeeEEEEeEEEECCCCCCCCCeE-E-ecCeecEEEEeeEEe
Q 047411          160 DRCNNLRMNNMNFINSPQ------THVTVMGCIGVEFGFLSIQAPGTSPNTDGI-H-IQASSNVYIHNAHIS  223 (226)
Q Consensus       160 ~~~~nv~i~~i~i~ns~~------~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi-~-~~~s~~v~I~n~~i~  223 (226)
                      ..++||.|++++|++...      -.+.+..+++|.|++|++....    .+.+ + ...+++|+|.+|.+.
T Consensus       130 ~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~s~nVwIDH~s~s~~~----d~~~~~~~~~s~~vTis~~~~~  197 (359)
T d1idka_         130 SGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIG----RQHYVLGTSADNRVSLTNNYID  197 (359)
T ss_dssp             TTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEES----SCSEEECCCTTCEEEEESCEEE
T ss_pred             ecCceEEEECcEEecCCCCCCCCCCeEEeeCCccEEEEeeeeccCC----CCceeeeccCCCceeeeceeee
Confidence            457788888888876421      3577777888888888776421    1222 2 235566777777764

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.75  E-value=0.0037  Score=52.93  Aligned_cols=68  Identities=10%  Similarity=0.238  Sum_probs=50.4

Q ss_pred             EEEEeecCcEEEeeeEEeCCCc-------------------eEEEEeCeeeEEEEeEEEECCCC------------CCCC
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQ-------------------THVTVMGCIGVEFGFLSIQAPGT------------SPNT  204 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~-------------------~~i~~~~s~~v~i~~~~i~~~~~------------~~nt  204 (226)
                      .|.+ +++||.|++|+|++...                   -.+.+..+++|.|++|++....+            ..-.
T Consensus       144 gl~i-~a~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~  222 (399)
T d1bn8a_         144 NFQI-KSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHH  222 (399)
T ss_dssp             EEEE-CSEEEEEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCC
T ss_pred             EEEE-eCceEEEeCeEEEcCcccccccccccccccCcCCCCceEEEecCccEEEECceeccCCccccccccccccccccc
Confidence            4666 69999999999997631                   23888999999999999986431            0123


Q ss_pred             Ce-EEec-CeecEEEEeeEEec
Q 047411          205 DG-IHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       205 DG-i~~~-~s~~v~I~n~~i~~  224 (226)
                      || +|+- .+++|+|.+|+|..
T Consensus       223 Dg~lDi~~gs~~VTvS~n~f~~  244 (399)
T d1bn8a_         223 DGQTDASNGANYITMSYNYYHD  244 (399)
T ss_dssp             CCSEEEETTCEEEEEESCEEEE
T ss_pred             ccceeecccceeEEeECccccC
Confidence            54 4553 58999999999863

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=96.73  E-value=0.02  Score=47.45  Aligned_cols=70  Identities=10%  Similarity=0.149  Sum_probs=48.0

Q ss_pred             eEEEEeecCcEEEeeeEEeCCCceEEE--EeCeeeEEEEeEEEECCCC------CCCCCeEEe-cCeecEEEEeeEEec
Q 047411          155 TVLKFDRCNNLRMNNMNFINSPQTHVT--VMGCIGVEFGFLSIQAPGT------SPNTDGIHI-QASSNVYIHNAHISN  224 (226)
Q Consensus       155 ~~i~~~~~~nv~i~~i~i~ns~~~~i~--~~~s~~v~i~~~~i~~~~~------~~ntDGi~~-~~s~~v~I~n~~i~~  224 (226)
                      -+|.+..++||.|+.++|.....-++.  ...+++|+|+++.+.....      ....+|... .+..+|+++++++.+
T Consensus       154 Dai~i~~s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~  232 (359)
T d1qcxa_         154 DAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYN  232 (359)
T ss_dssp             CSEEEESCCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEES
T ss_pred             CeEEeeCCCCEEEEeeeccccCCCceEeeccCCCceEeeccEeccCccccccccccCCCCceecCCCceEEEEeeeccC
Confidence            468889999999999999754433332  2456899999999987432      112233333 344679999999864

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=96.68  E-value=0.0015  Score=54.02  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             EEEeecC-cEEEeeeEEeCC--------Cc-eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          157 LKFDRCN-NLRMNNMNFINS--------PQ-THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       157 i~~~~~~-nv~i~~i~i~ns--------~~-~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      +.+..|+ +++++|+++.|.        |. -++++ .|++|+|+|+.|.+     ..|.|-+-+++||+|+||++.
T Consensus       120 ~~i~~~~~~v~i~nv~I~~~~i~~~~~~~NTDGidi-~s~nV~I~n~~i~~-----gDDcIaik~g~ni~i~n~~c~  190 (333)
T d1k5ca_         120 ISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKN-----QDDCIAINDGNNIRFENNQCS  190 (333)
T ss_dssp             EEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEES-----SSCSEEEEEEEEEEEESCEEE
T ss_pred             EEEecccCcEEEEeEEEEeeecCCCccCCCcceEeE-ecceEEEEecEEec-----CCCEEEEcCccEEEEEEEEEC
Confidence            3344443 555555555542        11 23444 25566666666654     235555555555555555544

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=96.56  E-value=0.0058  Score=50.98  Aligned_cols=63  Identities=22%  Similarity=0.264  Sum_probs=42.0

Q ss_pred             ecCcEEEeeeEEeCCC---------------ceEEEEe-CeeeEEEEeEEEECCCC------------CCCCCe-EEec-
Q 047411          161 RCNNLRMNNMNFINSP---------------QTHVTVM-GCIGVEFGFLSIQAPGT------------SPNTDG-IHIQ-  210 (226)
Q Consensus       161 ~~~nv~i~~i~i~ns~---------------~~~i~~~-~s~~v~i~~~~i~~~~~------------~~ntDG-i~~~-  210 (226)
                      +++||.|++++|++.+               .-.+.+. .+++|.|++|.+....+            ....|| +|+. 
T Consensus       112 ~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~  191 (361)
T d1pe9a_         112 GTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKR  191 (361)
T ss_dssp             TCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEECT
T ss_pred             ccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccCCccccccccccCcceeeeeeeEEeec
Confidence            5678899999988642               1235565 48889999999876321            012355 4553 


Q ss_pred             CeecEEEEeeEEe
Q 047411          211 ASSNVYIHNAHIS  223 (226)
Q Consensus       211 ~s~~v~I~n~~i~  223 (226)
                      .+++|+|.+|.|.
T Consensus       192 ~s~~vTiS~~~f~  204 (361)
T d1pe9a_         192 GSDYVTISNSLID  204 (361)
T ss_dssp             TCEEEEEESCEEE
T ss_pred             CccceEecCCccc
Confidence            4788888888875

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=96.43  E-value=0.005  Score=51.15  Aligned_cols=70  Identities=16%  Similarity=0.138  Sum_probs=53.7

Q ss_pred             ceEEEEeecCcEEEeeeEEeCCCc-----eEEEEeCeeeEEEEeEEEECCCC--------CCCCCe-EEe-cCeecEEEE
Q 047411          154 PTVLKFDRCNNLRMNNMNFINSPQ-----THVTVMGCIGVEFGFLSIQAPGT--------SPNTDG-IHI-QASSNVYIH  218 (226)
Q Consensus       154 p~~i~~~~~~nv~i~~i~i~ns~~-----~~i~~~~s~~v~i~~~~i~~~~~--------~~ntDG-i~~-~~s~~v~I~  218 (226)
                      +..|.+.+|+||.|++++|++.|.     -.+.+..|++|.|++|++....+        ..-+|| +++ ..+++|+|.
T Consensus       102 ~~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis  181 (353)
T d1o88a_         102 NFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVS  181 (353)
T ss_dssp             SSEEEEESCCSEEEESCEEECCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEE
T ss_pred             cceEEEeccceEEEeCcEEecCCCCCCCCcEEEEecccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEE
Confidence            356889999999999999998764     36889999999999999986432        122455 344 457888888


Q ss_pred             eeEEe
Q 047411          219 NAHIS  223 (226)
Q Consensus       219 n~~i~  223 (226)
                      ++++.
T Consensus       182 ~n~~~  186 (353)
T d1o88a_         182 YNYIH  186 (353)
T ss_dssp             SCEEE
T ss_pred             Ccccc
Confidence            88775

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=95.95  E-value=0.024  Score=46.91  Aligned_cols=61  Identities=26%  Similarity=0.363  Sum_probs=45.5

Q ss_pred             cCcEEEee----eEEeCCCceEEEEeCeeeEEEEeEEEECCCC-----------CCCCCeEEecCeecEEEEeeEEecC
Q 047411          162 CNNLRMNN----MNFINSPQTHVTVMGCIGVEFGFLSIQAPGT-----------SPNTDGIHIQASSNVYIHNAHISNG  225 (226)
Q Consensus       162 ~~nv~i~~----i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~-----------~~ntDGi~~~~s~~v~I~n~~i~~g  225 (226)
                      .+|.+|.+    .+|.+   +++.+..++||.|+|++|+...+           ....|+|.+..++||+|++|.+.-+
T Consensus        79 ~sn~TI~G~G~~~~i~g---~gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~~~~~vwIDHcs~s~~  154 (355)
T d1pcla_          79 PSNTTIIGVGSNGKFTN---GSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDG  154 (355)
T ss_pred             CCCCeEEeccCceEEec---CEEEEEccccEEEEeeEeecCcccCCccccCCCcCccCceEEecCCccEEEECcccccC
Confidence            45556653    44544   47778889999999999986421           2346999999999999999988643

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=95.86  E-value=0.0083  Score=49.89  Aligned_cols=60  Identities=10%  Similarity=0.129  Sum_probs=45.6

Q ss_pred             cCcEEEeee----EEeCCCceEEEE-eCeeeEEEEeEEEECCC--CCCCCCeEEecCeecEEEEeeEEec
Q 047411          162 CNNLRMNNM----NFINSPQTHVTV-MGCIGVEFGFLSIQAPG--TSPNTDGIHIQASSNVYIHNAHISN  224 (226)
Q Consensus       162 ~~nv~i~~i----~i~ns~~~~i~~-~~s~~v~i~~~~i~~~~--~~~ntDGi~~~~s~~v~I~n~~i~~  224 (226)
                      .+|.+|-+.    +|.+.   ++.+ ..++||.|+|++|+...  ...+.|+|.+..++||+|++|.+.-
T Consensus       107 ~sn~TI~G~g~~~~i~g~---g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~s~nVwIDH~s~s~  173 (359)
T d1idka_         107 TSNKSLIGEGSSGAIKGK---GLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTAR  173 (359)
T ss_dssp             CSSEEEEECTTTCEEESC---CEEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEE
T ss_pred             CCCceEEeccCCeEEecC---ceEEEecCceEEEECcEEecCCCCCCCCCCeEEeeCCccEEEEeeeecc
Confidence            467777664    44443   4555 46899999999998632  2346799999999999999999864

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=95.79  E-value=0.32  Score=39.27  Aligned_cols=47  Identities=17%  Similarity=0.219  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411           42 DSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG   93 (226)
Q Consensus        42 dt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g   93 (226)
                      |-..||+||+ +++...+ .-+|+|-+| +|.- .|.++.. |. +++|+.+|
T Consensus        18 df~TIq~AId-a~p~~~~~~~~I~I~~G-~Y~E-~V~I~~~-k~-~itl~G~g   65 (319)
T d1gq8a_          18 DYKTVSEAVA-AAPEDSKTRYVIRIKAG-VYRE-NVDVPKK-KK-NIMFLGDG   65 (319)
T ss_dssp             SBSSHHHHHH-HSCSSCSSCEEEEECSE-EEEC-CEEECTT-CC-SEEEEESC
T ss_pred             CccCHHHHHh-hCccCCCCcEEEEEcCc-eEEE-EEEECCC-CC-eEEEEEcC
Confidence            4557999995 5554210 236899999 9984 4445311 44 89998875

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.15  E-value=0.039  Score=46.36  Aligned_cols=64  Identities=14%  Similarity=0.241  Sum_probs=47.2

Q ss_pred             EEeecCcEEEee----eEEeCCCceEEEEeCeeeEEEEeEEEECCCC---------------CCCCCeEEecCeecEEEE
Q 047411          158 KFDRCNNLRMNN----MNFINSPQTHVTVMGCIGVEFGFLSIQAPGT---------------SPNTDGIHIQASSNVYIH  218 (226)
Q Consensus       158 ~~~~~~nv~i~~----i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~---------------~~ntDGi~~~~s~~v~I~  218 (226)
                      .+.-.+|.+|-|    .+|+..   ++.+ +++||.|+|++|+....               ....|+|.+..++||+|+
T Consensus       122 ~i~V~SNkTIiG~G~~~~i~g~---gl~i-~a~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWID  197 (399)
T d1bn8a_         122 MVDIPANTTIVGSGTNAKVVGG---NFQI-KSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWID  197 (399)
T ss_dssp             EEEECSSEEEEECTTCCEEESC---EEEE-CSEEEEEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEE
T ss_pred             EEecCCCceEEecCCCcEEecc---EEEE-eCceEEEeCeEEEcCcccccccccccccccCcCCCCceEEEecCccEEEE
Confidence            444567777754    455543   5655 68999999999997431               123699999999999999


Q ss_pred             eeEEecC
Q 047411          219 NAHISNG  225 (226)
Q Consensus       219 n~~i~~g  225 (226)
                      +|.+.-+
T Consensus       198 H~t~s~~  204 (399)
T d1bn8a_         198 HCTFNDG  204 (399)
T ss_dssp             SCEEECT
T ss_pred             CceeccC
Confidence            9999743

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=94.52  E-value=0.066  Score=43.99  Aligned_cols=89  Identities=21%  Similarity=0.299  Sum_probs=64.3

Q ss_pred             cceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC----------------------
Q 047411          119 DSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP----------------------  176 (226)
Q Consensus       119 ~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~----------------------  176 (226)
                      +.+.|...-||+|+|..=--            ......+.+.+++||.|++++|++..                      
T Consensus        82 ~~L~v~sn~TI~G~ga~~~i------------~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (346)
T d1pxza_          82 MPLYVAGHKTIDGRGADVHL------------GNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQD  149 (346)
T ss_dssp             SCEECCSSEEEECTTSCEEE------------ETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCC
T ss_pred             ceEEeCCCceEEccCCCceE------------eeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCC
Confidence            34666555688888753100            12223477888999999999998753                      


Q ss_pred             ceEEEEeCeeeEEEEeEEEECCCCCCCCCe-EEec-CeecEEEEeeEEec
Q 047411          177 QTHVTVMGCIGVEFGFLSIQAPGTSPNTDG-IHIQ-ASSNVYIHNAHISN  224 (226)
Q Consensus       177 ~~~i~~~~s~~v~i~~~~i~~~~~~~ntDG-i~~~-~s~~v~I~n~~i~~  224 (226)
                      .-++.+..+++|.|++|.+..     ..|| |++. .|++|+|.+|+|..
T Consensus       150 gDai~i~~s~nvwIDH~s~s~-----~~D~~idi~~~s~~vTis~~~f~~  194 (346)
T d1pxza_         150 GDAITMRNVTNAWIDHNSLSD-----CSDGLIDVTLGSTGITISNNHFFN  194 (346)
T ss_dssp             CCSEEEESCEEEEEESCEEEC-----CSSEEEEEESSCEEEEEESCEEES
T ss_pred             CceeeeecCceEEEECcEeec-----cccCceeEecCCEEEEEEeeEEcc
Confidence            125677899999999999986     3455 6764 58999999999864

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=94.43  E-value=0.031  Score=46.36  Aligned_cols=43  Identities=28%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             eCeeeEEEEeEEEECCCC-----------CCCCCeEEec-CeecEEEEeeEEecC
Q 047411          183 MGCIGVEFGFLSIQAPGT-----------SPNTDGIHIQ-ASSNVYIHNAHISNG  225 (226)
Q Consensus       183 ~~s~~v~i~~~~i~~~~~-----------~~ntDGi~~~-~s~~v~I~n~~i~~g  225 (226)
                      ..++||.|+|++|+.+.+           ....|+|.+. +++||+|++|.+.-+
T Consensus       111 ~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~  165 (361)
T d1pe9a_         111 DGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDG  165 (361)
T ss_dssp             GTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECT
T ss_pred             cccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccC
Confidence            357899999999997532           1346999996 589999999999743

>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus sp., strain ksmp15 [TaxId: 1409]

Probab=85.84  E-value=1.7  Score=32.16  Aligned_cols=92  Identities=12%  Similarity=0.262  Sum_probs=57.1

Q ss_pred             ceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCC
Q 047411          120 SLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPG  199 (226)
Q Consensus       120 nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~  199 (226)
                      -++|...-++||.++.|-............ ...+.+|.++  +..+|+|+.|-....-++|...  +++|+|+....- 
T Consensus         8 ti~V~aGetfDG~~k~~~~g~~~lg~~~q~-e~q~pvF~le--~GaTlkNviIG~~~adGIHc~G--~ctl~NV~wedV-   81 (197)
T d1ee6a_           8 TIRVPAGQTFDGKGQTYVANPNTLGDGSQA-ENQKPIFRLE--AGASLKNVVIGAPAADGVHCYG--DCTITNVIWEDV-   81 (197)
T ss_dssp             CEEECTTCEEEEEEEEEEECTTTTCCSSSC-SSCCCSEEEC--TTEEEEEEEECSSCTTCEEEES--CEEEEEEEESSC-
T ss_pred             cEEECCCceEcCCCcEECCCccccCCCccc-CCCCcEEEEc--CCCEEEEEEEcCCCCceEEEeC--cEEEEEEEeeec-
Confidence            455544238888877765421110001111 3344567775  6689999999766667888764  589999988874 


Q ss_pred             CCCCCCeEEecCeecEEEEee
Q 047411          200 TSPNTDGIHIQASSNVYIHNA  220 (226)
Q Consensus       200 ~~~ntDGi~~~~s~~v~I~n~  220 (226)
                         --|.+.+.++..++|.+.
T Consensus        82 ---cEDA~T~k~~gt~~I~gG   99 (197)
T d1ee6a_          82 ---GEDALTLKSSGTVNISGG   99 (197)
T ss_dssp             ---CSCSEEEEESEEEEEESC
T ss_pred             ---ccccceecCCceEEEECC
Confidence               446776666666666554

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=84.16  E-value=4.5  Score=32.13  Aligned_cols=61  Identities=16%  Similarity=0.173  Sum_probs=40.4

Q ss_pred             EEEEeecCcEEEeeeEEeCCCc----eEE-EEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411          156 VLKFDRCNNLRMNNMNFINSPQ----THV-TVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS  223 (226)
Q Consensus       156 ~i~~~~~~nv~i~~i~i~ns~~----~~i-~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~  223 (226)
                      .+.+ ..+++.++||+|+|+..    ..+ ....+++..+.+|++.+.+     |-+-.... .-..+||+|+
T Consensus        88 t~~v-~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~Q-----DTL~~~~g-r~yf~~c~Ie  153 (319)
T d1gq8a_          88 TVAA-VGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQ-----DSLYVHSN-RQFFINCFIA  153 (319)
T ss_dssp             SEEE-CSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECST-----TCEEECSS-EEEEESCEEE
T ss_pred             ceee-ecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccC-----CeeEECCC-CEEEEeeEEE
Confidence            3444 47899999999999732    111 2345778999999999864     33443333 3466777765

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=81.22  E-value=0.35  Score=38.82  Aligned_cols=38  Identities=34%  Similarity=0.510  Sum_probs=27.9

Q ss_pred             ccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeee
Q 047411           34 AAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPI   76 (226)
Q Consensus        34 A~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l   76 (226)
                      |+|||.+|||+||.++++ +.+.   | -.+=-.|.||++..+
T Consensus         2 a~gdgvtddt~ai~~~l~-~sp~---~-~~idg~g~tykvs~l   39 (516)
T d1v0ea1           2 AKGDGVTDDTAALTSALN-DTPV---G-QKINGNGKTYKVTSL   39 (516)
T ss_dssp             CCCEEEEECHHHHHHHHH-HSCT---T-SCEECTTCEEEESSC
T ss_pred             CccccccccHHHHHHHHh-cCCC---C-cEEcCCceeEEeeeC
Confidence            789999999999999995 4333   2 344455678888643