Citrus Sinensis ID: 047454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MHLAPSIKVIHKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVNNEQTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGRK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHcHHHHHHHHHHHHHccccccccHHcccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHccHHHHccccccccHHHHHHHccHHHHHHHHHHccHHHHHHEEEccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHEEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MHLAPSIKVIHKEKVRNMQAVEIVRIICKgviwndpqnQQLLKKAFFKAATLGISKFVQEIIAAYKGsvywedenkhTIFHVAVLHRRAEVFNLIYSStfksnwlgsndnirnnilhfggklvpsseVAGAALQMQRKLEWFKAVENLVHPFlreavnneqtprevFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAftvpggndsrgipnflhesSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTwkwvfipitlvgcvpVTLFALLQFPllfdmysstygrgifgrk
Flexible Loop (DISEMBL)
mhlapsikvihkekvrnmQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLreavnneqtprevftEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGRK
Low Complexity Region (SEG)
MHLAPSIKVIHKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVNNEQTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGRK
Disordered region (IsUnstruct)
*******KVIHKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVN********F*****ELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIF***
Disordered Region (DISOPRED)
***APSIKVIHKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVNNEQTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR*
Disordered Region (DISEMBL)
MHLAPSIKVIHKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVNNEQTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGRK
Disordered Region (DISPRO)
MHLAPSIKVIHKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVNNEQTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIF***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLAPSIKVIHKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVNNEQTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.793	0.455	0.264	7e-13
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.719	0.458	0.239	1e-07

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 142/306 (46%), Gaps = 37/306 (12%)

Query: 27  ICKGVIWNDPQNQQLLKKAFFKAATLGI----SKFVQEIIAAYKGSVYWEDENKHTIFHV 82
           + K ++  DPQ  + + K    A  + +    S+ V+ ++ A    V   D++ +T  HV
Sbjct: 247 VIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHV 306

Query: 83  AVLHRRAEVFNLIYS-STFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEW 141
           A   +RAE+  L+ S     +N L  +     +I     + +P SE +    +   +   
Sbjct: 307 ATRKKRAEIVELLLSLPDTNANTLTRDHKTALDI----AEGLPLSEESSYIKECLARSGA 362

Query: 142 FKAVE-NLVHPFLREAVNN---------EQTPR-----EVFTEEHKELVKEGEKWMKETA 186
            +A E N     LR  V           EQT R        ++E ++L +EG   +    
Sbjct: 363 LRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREG---INNAT 419

Query: 187 TACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMF 246
            + +VVA    TV FAA FTVPGG+++ G    +  +SF IF + +AL+LF+S+  V++ 
Sbjct: 420 NSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQ 479

Query: 247 LGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMM--VSFGATIYLVLFSTWKWVFIPI 304
           + ++      E        K ++++I     +ASM   V+F A+ Y+V+    +W    +
Sbjct: 480 ITLVRGETKAE--------KRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELV 531

Query: 305 TLVGCV 310
           T+VG V
Sbjct: 532 TVVGGV 537

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 27/271 (9%)

Query: 56  KFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNI 115
           + V+EI+ A    +   D   +T  H+A    R ++ +L+   TF +  + + +N +   
Sbjct: 210 EVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLL--TFTAIEVNAINNQKETA 267

Query: 116 LHFGGKLVPSS---EVAGAALQMQRKLEWF-----------KAVENLVHPFLREAVNNEQ 161
           +    KL  S    E+  A ++   K   F           +AV ++ H    + + NE+
Sbjct: 268 MDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEK 327

Query: 162 TPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGG----NDSRGIP 217
           T R V +   KEL K   + ++ T  + +VVA    ++ F A F +PG         G  
Sbjct: 328 TNRRV-SGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQA 386

Query: 218 NFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFS 277
           N    + F +F + +A SLF S+  V++ + ++      +  ++S+  KL      M+ +
Sbjct: 387 NIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKL------MWAA 440

Query: 278 IASMMVSFGATIYLVLFSTWKWVFIPITLVG 308
            A    +F A  + V+     W+ I ITL+G
Sbjct: 441 CACTFGAFLAIAFAVVGKGNSWMAITITLLG 471

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
255544802	590	ankyrin repeat-containing protein, putat	0.973	0.559	0.541	7e-96
297740805	702	unnamed protein product [Vitis vinifera]	0.991	0.478	0.511	2e-87
297737987	1855	unnamed protein product [Vitis vinifera]	0.997	0.182	0.484	2e-86
359483665	762	PREDICTED: ankyrin repeat-containing pro	0.979	0.435	0.514	2e-86
224131182	543	predicted protein [Populus trichocarpa]	0.985	0.615	0.491	2e-86
356532648	739	PREDICTED: uncharacterized protein LOC10	0.985	0.451	0.492	2e-86
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.994	0.198	0.485	4e-86
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.985	0.423	0.486	5e-86
224136692	743	predicted protein [Populus trichocarpa]	0.988	0.450	0.489	6e-86
255552378	580	ankyrin repeat-containing protein, putat	0.985	0.575	0.492	4e-85

>gi|255544802|ref|XP_002513462.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223547370|gb|EEF48865.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 181/334 (54%), Positives = 246/334 (73%), Gaps = 4/334 (1%)

Query: 7   IKVIHKEKVRNMQAVEIVR-IICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAY 65
           ++ I K  + + QAVE++R +I + +  N+ Q   LL  +   A   GI +FV E I +Y
Sbjct: 248 LRDIDKTLLMHKQAVELLRNLISEALKANESQLHSLLGSSTQTATKFGIQEFVAEAIKSY 307

Query: 66  KGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGS-NDNIRNNILHFGGKLVP 124
             SV++ D +  TIFH+A+ HR+ ++FNL+Y      + + S  D++ N +LH  G L P
Sbjct: 308 PYSVWFRDGDGCTIFHLAIKHRQEKIFNLLYQIGNHKHIITSLADSLGNTMLHLAGTLQP 367

Query: 125 SSEVAGAALQMQRKLEWFKAVENLVHPFLREAVN-NEQTPREVFTEEHKELVKEGEKWMK 183
           SS+++GAALQMQR+L+WFK VE ++ P  +E  + N +TPR+VFTE HK LV++GEKWMK
Sbjct: 368 SSKISGAALQMQRELQWFKEVEKVIQPSYKELKDKNGRTPRQVFTEGHKSLVEQGEKWMK 427

Query: 184 ETATACSVVAAFIITVMFAAAFTVPGGNDS-RGIPNFLHESSFIIFAVSDALSLFSSIIS 242
           +TAT+C+ VAA +ITV+FAAAFTVPGGN+S +GIP +L+E++F+IFA+SDAL LFSS  S
Sbjct: 428 DTATSCATVAALVITVVFAAAFTVPGGNNSDQGIPIYLNETAFVIFAISDALGLFSSSTS 487

Query: 243 VLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFI 302
           +LMFLGILTSRYSE DFL +LP +L I LIT+FFSIASM+ +F A  +LVLF   KW+ +
Sbjct: 488 LLMFLGILTSRYSEGDFLKALPMRLSIGLITLFFSIASMLAAFSAAFHLVLFHRVKWIAV 547

Query: 303 PITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIF 336
           PI LV C PVTLFALLQFPLL +M SST+GR +F
Sbjct: 548 PIGLVACAPVTLFALLQFPLLSEMISSTFGRSVF 581

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740805|emb|CBI30987.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/346 (51%), Positives = 237/346 (68%), Gaps = 10/346 (2%)

Query: 1   MHLAPSIKVIHKEKVRNMQAVEIVRIICKGVI-WNDPQNQQLLK---KAFFKAATLGISK 56
           +H  P IKV++ +K+ ++QA+E+V+ +   V+  N+ Q  +L++   +  F AA LGI +
Sbjct: 325 IHKVPFIKVVYDQKLMHIQALELVKCLWSEVLLMNELQVGELIRTPSRLLFTAAELGIVE 384

Query: 57  FVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGS-NDNIRNNI 115
           F+ E+I AY   ++  D    +IFH+AV+HR+ +VFNLI+      + + S  D   NN+
Sbjct: 385 FLIELIHAYPDLIWKVDTQSRSIFHIAVVHRQEKVFNLIHEIGALKDLIASYRDENNNNM 444

Query: 116 LHFGGKLVPSSEV---AGAALQMQRKLEWFKAVENLVHPFLREAVNNE-QTPREVFTEEH 171
           LH  GKL PS  +   +GAALQ++R+L WFK VE +V P  RE  N+E +TP+ +F EEH
Sbjct: 445 LHLAGKLAPSDRLKTDSGAALQLRRELHWFKEVEKIVQPLYREIRNSEGKTPQTLFMEEH 504

Query: 172 KELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGG-NDSRGIPNFLHESSFIIFAV 230
           K LV+EGEKWMK+TA +C +VA  I TVMFAA FTVPGG N + GIP FL   SF +FAV
Sbjct: 505 KVLVREGEKWMKDTAASCMLVATLIATVMFAAFFTVPGGDNGNTGIPIFLKRRSFTVFAV 564

Query: 231 SDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIY 290
           SDALS  SS  S+LMFL ILTSRY+EEDFL SLP +L I L T+F S+A+MM++F AT++
Sbjct: 565 SDALSFVSSAASILMFLSILTSRYAEEDFLHSLPNRLTIGLGTLFISVATMMIAFCATLF 624

Query: 291 LVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIF 336
           LVL        IPI LV C+PV+LFALLQFPL  DM S TYG  +F
Sbjct: 625 LVLGHGLHQAKIPIALVACIPVSLFALLQFPLFADMVSCTYGSRMF 670

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/349 (48%), Positives = 241/349 (69%), Gaps = 11/349 (3%)

Query: 1   MHLAPSIKVIHKEKVRNMQAVEIVRIICKGVIW--NDPQNQQLLK---KAFFKAATLGIS 55
           +H+ P  K ++ +K+ ++QA+E+V+ +   ++   +DP+  +L++   +  F AA LGI 
Sbjct: 346 IHVIPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIV 405

Query: 56  KFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGS-NDNIRNN 114
           +F+  +I +Y   ++  ++   TIFHVAV HR+ ++FNLIY      +++ +  D   NN
Sbjct: 406 EFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNN 465

Query: 115 ILHFGGKLVPSSEV---AGAALQMQRKLEWFKAVENLVHPFLREAVNNE-QTPREVFTEE 170
           +LH  GKL PS+ +   +GAA Q+QR+L WFK VE ++ P   E  N + +TP+ +FTEE
Sbjct: 466 MLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEE 525

Query: 171 HKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSR-GIPNFLHESSFIIFA 229
           HK+LV+EGEKWMK+TA++C VVA  I TVMFAAAF+VPGGND   G P FL + SF++FA
Sbjct: 526 HKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFA 585

Query: 230 VSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATI 289
           +SDAL+LFSS  S+L+FL ILTSRY+EEDFL SLP +LII L T+F S+A+MM++F AT+
Sbjct: 586 ISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATL 645

Query: 290 YLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
           ++VL     WV  P+ LV CVPVTLF LL+FPL  DM S  Y   I  R
Sbjct: 646 FIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFR 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/342 (51%), Positives = 235/342 (68%), Gaps = 10/342 (2%)

Query: 5   PSIKVIHKEKVRNMQAVEIVRIICKGVI-WNDPQNQQLLK---KAFFKAATLGISKFVQE 60
           P IKV++ +K+ ++QA+E+V+ +   V+  N+ Q  +L++   +  F AA LGI +F+ E
Sbjct: 412 PFIKVVYDQKLMHIQALELVKCLWSEVLLMNELQVGELIRTPSRLLFTAAELGIVEFLIE 471

Query: 61  IIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGS-NDNIRNNILHFG 119
           +I AY   ++  D    +IFH+AV+HR+ +VFNLI+      + + S  D   NN+LH  
Sbjct: 472 LIHAYPDLIWKVDTQSRSIFHIAVVHRQEKVFNLIHEIGALKDLIASYRDENNNNMLHLA 531

Query: 120 GKLVPSSEV---AGAALQMQRKLEWFKAVENLVHPFLREAVNNE-QTPREVFTEEHKELV 175
           GKL PS  +   +GAALQ++R+L WFK VE +V P  RE  N+E +TP+ +F EEHK LV
Sbjct: 532 GKLAPSDRLKTDSGAALQLRRELHWFKEVEKIVQPLYREIRNSEGKTPQTLFMEEHKVLV 591

Query: 176 KEGEKWMKETATACSVVAAFIITVMFAAAFTVPGG-NDSRGIPNFLHESSFIIFAVSDAL 234
           +EGEKWMK+TA +C +VA  I TVMFAA FTVPGG N + GIP FL   SF +FAVSDAL
Sbjct: 592 REGEKWMKDTAASCMLVATLIATVMFAAFFTVPGGDNGNTGIPIFLKRRSFTVFAVSDAL 651

Query: 235 SLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLF 294
           S  SS  S+LMFL ILTSRY+EEDFL SLP +L I L T+F S+A+MM++F AT++LVL 
Sbjct: 652 SFVSSAASILMFLSILTSRYAEEDFLHSLPNRLTIGLGTLFISVATMMIAFCATLFLVLG 711

Query: 295 STWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIF 336
                  IPI LV C+PV+LFALLQFPL  DM S TYG  +F
Sbjct: 712 HGLHQAKIPIALVACIPVSLFALLQFPLFADMVSCTYGSRMF 753

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131182|ref|XP_002328475.1| predicted protein [Populus trichocarpa] gi|222838190|gb|EEE76555.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 240/342 (70%), Gaps = 8/342 (2%)

Query: 5   PSIKVIHKEKVRNMQAVEIVRIICKGV--IWNDPQNQQLLKKAFFKAATLGISKFVQEII 62
           P+IK ++  K+ + QA+ ++  +C+ +  +      +  + KA F A   GI +F+ EI+
Sbjct: 192 PAIKKMYNLKLIHGQALAVLCCLCEQISTLHRSEFKEIGVYKAVFNAVKHGIVEFIVEIV 251

Query: 63  AAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSN-DNIRNNILHFGGK 121
             Y   +++ED+    IF  A L R+ ++F+L+Y    K N + +  D   NNILH    
Sbjct: 252 RHYPDVIWFEDDLNRGIFLYATLQRQEKIFSLLYKMGAKKNSMATPWDKYHNNILHQAAF 311

Query: 122 LVPSSE---VAGAALQMQRKLEWFKAVENLVHPFLREAVN-NEQTPREVFTEEHKELVKE 177
           L PSS+   V+GAALQMQR+L+W+K VE++V P  RE VN N +TP+ +FTE+H++LV+E
Sbjct: 312 LAPSSQLDRVSGAALQMQRELQWYKEVESIVQPKYREMVNFNHRTPQALFTEQHRKLVEE 371

Query: 178 GEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDS-RGIPNFLHESSFIIFAVSDALSL 236
           GEKWMK+T+ +C+VVAA I T+MF+A FTVPGG D   GIP +LH +SF++F VSDA+SL
Sbjct: 372 GEKWMKDTSESCTVVAALISTIMFSAIFTVPGGYDQFSGIPIYLHGNSFMVFMVSDAMSL 431

Query: 237 FSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFST 296
           F+S  S+LMFLGILTSRY EEDFL SLP K+I+ L  +FFSIA+MM++FG T++++L   
Sbjct: 432 FASTSSLLMFLGILTSRYREEDFLKSLPTKMIVGLSCLFFSIATMMITFGITLFMMLRDR 491

Query: 297 WKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
           + W+  PI L+  +PVTLFALLQFPLL +++ STYG GIF R
Sbjct: 492 FPWISFPIILLASLPVTLFALLQFPLLVEIFFSTYGPGIFDR 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/345 (49%), Positives = 242/345 (70%), Gaps = 11/345 (3%)

Query: 5   PSIKVIHKEKVRNMQAVEIVRIICKGVIWNDP-QNQQLLK----KAFFKAATLGISKFVQ 59
           P  + + K+K  N QA+++V+ + + ++ +D  Q+  L+K    +  F AA  GI + V 
Sbjct: 395 PGFEAVQKKKTLNAQALKLVQRLWELIVSSDEIQHGDLIKSPLSRPLFIAAESGIPEIVI 454

Query: 60  EIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGS-NDNIRNNILHF 118
           E++ +Y   ++  D    ++FH+A++HR+ ++FNLIY      + + S  DN  +NILH 
Sbjct: 455 ELLYSYPDLLWKVDGQNRSLFHIAIMHRQEKIFNLIYDIGAHKDLITSYRDNNNHNILHL 514

Query: 119 GGKLVPSSE---VAGAALQMQRKLEWFKAVENLVHPFLREAVNNE-QTPREVFTEEHKEL 174
            GKL PS +   V+GAALQMQR+L WFK VE ++ P  +E  +++ +TP+ +FTEEHKEL
Sbjct: 515 AGKLAPSEQLHVVSGAALQMQRELLWFKEVEKIIQPLFKEIKDSQGRTPQMLFTEEHKEL 574

Query: 175 VKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGI-PNFLHESSFIIFAVSDA 233
            KEGEKW+K TA++C +VA  I TVMFAA FTVPGGN++    P F+H +SF +FA+SDA
Sbjct: 575 AKEGEKWLKNTASSCMLVATLITTVMFAAIFTVPGGNNNNNGYPIFMHTTSFKVFALSDA 634

Query: 234 LSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVL 293
           L+LFSS+ISVLMFL ILTSRY++EDFL+SLPR+L + + T+FFSI +M+++FGAT ++VL
Sbjct: 635 LALFSSVISVLMFLSILTSRYAQEDFLVSLPRRLSVGIATLFFSIITMLIAFGATFFIVL 694

Query: 294 FSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
                W+ IP TLV C+P  LFALLQFPLL D  S TYG G+F R
Sbjct: 695 GHQLAWIVIPTTLVACIPAILFALLQFPLLVDTISCTYGAGVFSR 739

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/348 (48%), Positives = 239/348 (68%), Gaps = 11/348 (3%)

Query: 2   HLAPSIKVIHKEKVRNMQAVEIVRIICKGVIW--NDPQNQQLLK---KAFFKAATLGISK 56
           H  P  K ++ +K+ ++QA+E+V+ +   ++   +DP+  +L++   +  F AA LGI +
Sbjct: 412 HAVPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVE 471

Query: 57  FVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGS-NDNIRNNI 115
           F+  +I +Y   ++  ++   TIFHVAV HR+ ++FNLIY      +++ +  D   NN+
Sbjct: 472 FITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNM 531

Query: 116 LHFGGKLVPSSEV---AGAALQMQRKLEWFKAVENLVHPFLREAVNNE-QTPREVFTEEH 171
           LH  GKL PS+ +   +GAA Q+QR+L WFK VE ++ P   E  N + +TP+ +FTEEH
Sbjct: 532 LHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEH 591

Query: 172 KELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSR-GIPNFLHESSFIIFAV 230
           K+LV+EGEKWMK+TA++C VVA  I TVMFAAAF+VPGGND   G P FL + SF++FA+
Sbjct: 592 KDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAI 651

Query: 231 SDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIY 290
           SDAL+LFSS  S+L+FL ILTSRY+EEDFL SLP +LII L T+F S+A+MM++F AT++
Sbjct: 652 SDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLF 711

Query: 291 LVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
           +VL     WV  P+ LV CVPVTLF LL+FPL  DM S  Y   I  R
Sbjct: 712 IVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFR 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  324 bits (830), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 168/345 (48%), Positives = 238/345 (68%), Gaps = 11/345 (3%)

Query: 5   PSIKVIHKEKVRNMQAVEIVRIICKGVIW--NDPQNQQLLK---KAFFKAATLGISKFVQ 59
           P  K ++ +K+ ++QA+E+V+ +   ++   +DP+  +L++   +  F AA LGI +F+ 
Sbjct: 376 PGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVEFIT 435

Query: 60  EIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGS-NDNIRNNILHF 118
            +I +Y   ++  ++   TIFHVAV HR+ ++FNLIY      +++ +  D   NN+LH 
Sbjct: 436 VLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHL 495

Query: 119 GGKLVPSSEV---AGAALQMQRKLEWFKAVENLVHPFLREAVNNE-QTPREVFTEEHKEL 174
            GKL PS+ +   +GAA Q+QR+L WFK VE ++ P   E  N + +TP+ +FTEEHK+L
Sbjct: 496 AGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDL 555

Query: 175 VKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSR-GIPNFLHESSFIIFAVSDA 233
           V+EGEKWMK+TA++C VVA  I TVMFAAAF+VPGGND   G P FL + SF++FA+SDA
Sbjct: 556 VREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDA 615

Query: 234 LSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVL 293
           L+LFSS  S+L+FL ILTSRY+EEDFL SLP +LII L T+F S+A+MM++F AT+++VL
Sbjct: 616 LALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVL 675

Query: 294 FSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
                WV  P+ LV CVPVTLF LL+FPL  DM S  Y   I  R
Sbjct: 676 GPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFR 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 169/345 (48%), Positives = 236/345 (68%), Gaps = 10/345 (2%)

Query: 5   PSIKVIHKEKVRNMQAVEIVRIICKGVIW-NDPQNQQLL---KKAFFKAATLGISKFVQE 60
           P IK ++ +K+ + Q +E+V++  + V+  +D Q  +LL    +  F AA  GI +F+  
Sbjct: 393 PGIKAVYDKKLMHTQVLELVKLSWEQVLLLDDCQIAELLASPSQPLFVAAEFGIVEFITA 452

Query: 61  IIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRN-NILHFG 119
           +I +Y   ++  +E   +IFH+AV HR+ ++F+LI       + + +  +I N NILH  
Sbjct: 453 LIRSYPDLIWKVNEQSRSIFHIAVAHRQEKIFSLINDIGAHKDMITAYKDINNANILHLA 512

Query: 120 GKLVPSSE---VAGAALQMQRKLEWFKAVENLVHPFLREAVN-NEQTPREVFTEEHKELV 175
           G + P  +   ++GAALQMQR+L WFK VE  V P L+E  + N +TPR +FTEEH+ LV
Sbjct: 513 GMIAPRDKLNVISGAALQMQRELLWFKEVEKNVQPSLKEMRDKNGRTPRMLFTEEHRGLV 572

Query: 176 KEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGND-SRGIPNFLHESSFIIFAVSDAL 234
           KEGEKWMK TA++C ++A  I TVMFAA FTVPGGND S+G P  L  +SFI+FAV+DA 
Sbjct: 573 KEGEKWMKNTASSCMLLATLITTVMFAAIFTVPGGNDNSKGTPLVLASTSFIVFAVADAF 632

Query: 235 SLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLF 294
           +LFSS+ S+LMFL ILTSRY+EEDF+ SLP++L++ L T+F SIA+M+V+F AT  +VL 
Sbjct: 633 ALFSSVTSILMFLSILTSRYAEEDFVESLPKRLVVGLATLFCSIAAMLVAFAATFCIVLD 692

Query: 295 STWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGRK 339
               W+ +PI+L   VPVTLFA LQFPL  DM  S+YG GIF RK
Sbjct: 693 HRLAWIVVPISLGSSVPVTLFAFLQFPLFVDMIHSSYGAGIFARK 737

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552378|ref|XP_002517233.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543604|gb|EEF45133.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/341 (49%), Positives = 235/341 (68%), Gaps = 7/341 (2%)

Query: 5   PSIKVIHKEKVRNMQAVEIVRIICKGV-IWNDPQNQQL-LKKAFFKAATLGISKFVQEII 62
           P ++ ++  K+ ++QA E++  +C+ +   +  + + + + +A FKA   G  +FV+E+ 
Sbjct: 233 PGLEYLYNLKLTHVQAHELLCCLCQEISTLHKSEFENIGVYRAIFKAVKHGTVEFVEEMT 292

Query: 63  AAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSN-DNIRNNILHFGGK 121
             Y   ++ EDE    IF  AVL R+ +VFNLIY    K N + ++ D   NNILH    
Sbjct: 293 KHYPDIIWCEDECNRGIFMYAVLQRQEKVFNLIYKMGAKKNSIATSWDKYFNNILHQAAS 352

Query: 122 LVPSSE---VAGAALQMQRKLEWFKAVENLVHPFLREAVN-NEQTPREVFTEEHKELVKE 177
             PSS+   V+GAALQMQR+L+W+K VE++V P  +E VN   +TPR +FTE HK+LV+E
Sbjct: 353 PPPSSQLDRVSGAALQMQRELQWYKEVESIVQPKYKEMVNFQRKTPRALFTESHKKLVEE 412

Query: 178 GEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLF 237
           GEKWMK+TAT+ +VVAA I T+MF+A FTVPGG D  G P +L+E  F++F V+DA+SLF
Sbjct: 413 GEKWMKDTATSSTVVAALIATIMFSAIFTVPGGYDQYGKPLYLYEGVFMVFMVADAMSLF 472

Query: 238 SSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTW 297
           +S  S+LMFLGILT+RY EEDFL SLP KLI+ L T+FFSIA+MM++FG  ++  L    
Sbjct: 473 ASTSSILMFLGILTARYREEDFLKSLPTKLIVGLSTLFFSIATMMITFGVALFTFLRERV 532

Query: 298 KWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
            WV  PI L+  +PVTLFALLQFPLL +++ STYG GIF +
Sbjct: 533 SWVLFPIILLASLPVTLFALLQFPLLVEIFFSTYGLGIFEK 573

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.976	0.494	0.426	2.6e-63
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.967	0.524	0.402	5.7e-59
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.967	0.543	0.416	2e-56
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.864	0.844	0.394	3e-53
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.864	0.510	0.396	2e-49
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.823	0.459	0.267	7.8e-12
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.799	0.459	0.256	1.6e-11
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.707	0.441	0.254	5.9e-08
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.793	0.505	0.242	3.5e-07
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.371	0.262	0.280	1.2e-06

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 146/342 (42%), Positives = 209/342 (61%)

Query:     7 IKVIHKEKVRNMQAVEIVRIICKGVI-WNDPQNQQLLKKAFFKAATLGISKFVQEIIAAY 65
             I  +++ KV ++QA +++  I +  +     +  + + +A   A   G   F+ E+I   
Sbjct:   323 IDEVYRLKVMHLQAKKLLLGISEETLALGLKERSETVDEALLFAVRYGNVDFLVEMIRN- 381

Query:    66 KGSVYWEDE--NKHTIFHVAVLHRRAEVFNLIYS-STFKSNWLGSNDNIRNNILHFGGKL 122
                + W     +  T+F +AV  R+ +VF+L+Y     K   L   D   N +LH  G  
Sbjct:   382 NSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYLLLADKDCDGNGVLHLAGFP 441

Query:   123 VPSSE---VAGAALQMQRKLEWFKAVENLVHPFLREAVNNE-QTPREVFTEEHKELVKEG 178
              P S+   V GA LQ+QR+L+WFK VE +     +E VN E QTP E+FT+EH+ L +E 
Sbjct:   442 SPPSKLSSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLRQEA 501

Query:   179 EKWMKETATACSVVAAFIITVMFAAAFTVPGGND--SRGIPNFLHESSFIIFAVSDALSL 236
             EKWMK+TA +CS+VAA I+TV FAA FTVPGG D  S+G P  L +  FIIF VSD +S 
Sbjct:   502 EKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISC 561

Query:   237 FSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFST 296
             F+S  SVL+FLGILT+RYS +DFL+ LP K+I  L  +F SIA+M+++F + ++ ++   
Sbjct:   562 FASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKE 621

Query:   297 WKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
              KW+  P  L  C+P  LF LLQ+PLL +M  STYG+GIF R
Sbjct:   622 GKWIVAPTILFACLPALLFVLLQYPLLKEMIFSTYGKGIFDR 663

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 137/340 (40%), Positives = 205/340 (60%)

Query:     7 IKVIHKEKVRNMQAVEIVRIICKGVI-WNDPQNQQLLKKAFFKAATLGISKFVQEIIAAY 65
             I  +++ KV ++QA ++++ I +  +     +  + + +A   A   G   F+ E+I   
Sbjct:   284 IDEVYRLKVMHLQAKKLLKGISEETLALGLKERSESVDEALLFAVRYGNVDFLVEMIKN- 342

Query:    66 KGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS-STFKSNWLGSNDNIRNNILHFGGKLVP 124
                + W      T+F+ AV  R+ +VF+L+Y     K  +L   D+  N++LH  G   P
Sbjct:   343 NSELLWSTGTS-TLFNTAVQVRQEKVFSLLYGLGDRKYLFLADKDSDGNSVLHLAGYPPP 401

Query:   125 SSEVA---GAALQMQRKLEWFKAVENLVHPFLREAVNNEQ-TPREVFTEEHKELVKEGEK 180
             + ++A    A LQMQR+L+WFK +E +V     E VN E  TP E+F +EH+ +  E EK
Sbjct:   402 NYKLATVVSATLQMQRELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEK 461

Query:   181 WMKETATACSVVAAFIITVMFAAAFTVPGGND--SRGIPNFLHESSFIIFAVSDALSLFS 238
             WMK+TA +CS+VAA I+TV FAA FTVPGG D  S G P   HE  F+IF VSD +S F+
Sbjct:   462 WMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFA 521

Query:   239 SIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWK 298
             +  SVL+FLGILT+RY+ +DFL SLP  +I  L T+F SIA+M+V+F + ++ + F+   
Sbjct:   522 ACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTI-FND-P 579

Query:   299 WVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
             W+  P     C P  LF ++Q+PLL ++  STYG+ IF R
Sbjct:   580 WIVAPTIFFACFPALLFVMIQYPLLKELIFSTYGKRIFDR 619

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 144/346 (41%), Positives = 208/346 (60%)

Query:     7 IKVIHKEKVRNMQAVEIVRIICKGV----IWNDPQNQQLLKKAFFKAATLGISKFVQEII 62
             IK  +  K R+ QA ++++ +C  +      N+ + ++ + +A  +AA  G   F  EII
Sbjct:   255 IKQTYDLKKRHSQAQKLLKQMCTSLRDIMAKNEIRWKETVYEALLEAAKSGNRDFFIEII 314

Query:    63 AAYKGSVYW--EDENKHTIFHVAVLHRRAEVFNLIYS-STFKSNWLGSNDNIRNNILHFG 119
                   + W     +   +F +AV  ++ ++FNLI+     K   L S D   NNILH  
Sbjct:   315 KC-NSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSYDKGNNNILHIA 373

Query:   120 GKL-VPS--SEVAGAALQMQRKLEWFKAVENLVHPFLREAVN---NEQTPREVFTEEHKE 173
             G+L  P   S+++GAAL+MQR+ +WFK VE+LV    RE V    + +TPR++F   H+ 
Sbjct:   374 GRLSTPDQLSKISGAALKMQRESQWFKEVESLVSE--REVVQKNKDNKTPRQIFEHYHEH 431

Query:   174 LVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGND-SRGIPNFLHESSFIIFAVSD 232
             L KEGE+WMK TATACS VAA I TV F A FTVPGG D + G P  L++  F  F  +D
Sbjct:   432 LRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTD 491

Query:   233 ALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLV 292
              L+ F+S ISVL+FL ILTSRYS +DF++SLPRK+I+    +F SIASM+V+F  ++   
Sbjct:   492 TLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSLSAS 551

Query:   293 LFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTYGRGIFGR 338
             +      V+ P+  +   P  LF +LQ+PLL +M SSTYG+ +F R
Sbjct:   552 MRHKPALVY-PLKPLASFPSLLFLMLQYPLLKEMISSTYGKRLFYR 596

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 121/307 (39%), Positives = 182/307 (59%)

Query:    47 FKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLG 106
             F AA  G  + +  +I +Y   ++  D    ++FH+A ++R  ++FN IY      + + 
Sbjct:    36 FDAAQSGNLELLLILIRSYPDLIWTVDHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIA 95

Query:   107 --SNDNIRNNILHFGGKLVPSSE---VAGAALQMQRKLEWFKAVENLV-HPFLREAVNNE 160
                     +N+LH   +L P +    V+GAALQMQR++ W+KAV+ +V   +++     E
Sbjct:    96 MYKEKESNDNLLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIVPRVYIKTKNKKE 155

Query:   161 QTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRG----- 215
             +   ++FT+EH  L KEGEKWMKETATAC +V+  I TV+FAAAFT+PGGND+ G     
Sbjct:   156 EVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTL 215

Query:   216 -IPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITM 274
               P F  E  F +F +SD+++L SS+ S+++FL ILTSRY+E  F  +LP KL++ L+ +
Sbjct:   216 GFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLAL 275

Query:   275 FFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTY-GR 333
             F SI SM+++F AT+ L+     KW  I +  V       F +L F L FD   S Y  +
Sbjct:   276 FVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHFQLWFDTLRSAYLSK 335

Query:   334 GIF-GRK 339
              +F GRK
Sbjct:   336 FLFHGRK 342

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 122/308 (39%), Positives = 180/308 (58%)

Query:    47 FKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLG 106
             F AA LG  + +  +I ++   ++  D N  T+FHVA L+R   +F+LIY      + + 
Sbjct:   260 FDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIKDLIA 319

Query:   107 S--NDNIRNNILHFGGKLVPSS--EV-AGAALQMQRKLEWFKAVENLVHPFLREAVNNE- 160
             S      ++ +LH   +L P +  +V +GAAL MQ++L WFKAV+ +V     E  N + 
Sbjct:   320 SYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKG 379

Query:   161 QTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSRG----- 215
             +   ++FTE+H+ L KEGE+WMKETATAC + A  I TV+FAAA T+PGGND  G     
Sbjct:   380 ELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANT 439

Query:   216 --IPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLIT 273
                PNF     F IF +SD+++LFSS++S+++FL I TSRY+EEDF   LP KL+  L  
Sbjct:   440 LGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSA 499

Query:   274 MFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFALLQFPLLFDMYSSTY-G 332
             +F SI SM+++F  ++ L+         + I+ +  +    FA L F L F+   S Y  
Sbjct:   500 LFISIISMILAFTFSMILIRVEKASLSLVLISCLASLTALTFAYLYFHLWFNTLRSVYIS 559

Query:   333 RGIF-GRK 339
               +F GRK
Sbjct:   560 MFLFLGRK 567

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 7.8e-12, P = 7.8e-12
 Identities = 83/310 (26%), Positives = 141/310 (45%)

Query:    21 VEIVRIICKGVIWNDPQNQQLLKK---AFFKAATLGIS-KFVQEIIAAYKGSVYWEDENK 76
             V+IVR +       DPQ  +   K        A  G+S + V+ ++ A    V   D+  
Sbjct:   259 VDIVRTLLD----KDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFG 314

Query:    77 HTIFHVAVLHRRAEVFN-LIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQM 135
             +T+ H+A   +RAE+ N L+       N L  +     +I    G L  S E A    ++
Sbjct:   315 NTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAE--G-LTHSEETAEIK-EI 370

Query:   136 QRKLEWFKAVE-NLVHPFLREAVNN---------EQTPREVFTEEH--KELVKEGEKWMK 183
               +    KA E N     LR+ V           EQT +     +   KEL K     + 
Sbjct:   371 LSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGIN 430

Query:   184 ETATACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISV 243
                 + +VVA    TV FAA FTVPGG+D  G+   +H +SF IF + +A++LF+S+  V
Sbjct:   431 NATNSVTVVAVLFATVAFAAIFTVPGGDDDHGVAVMVHATSFKIFFIFNAIALFTSLAVV 490

Query:   244 LMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIP 303
             ++ + ++      E  ++ +  KL      M+ +     V+F ++ Y+V+    ++  + 
Sbjct:   491 VVQITLVRGETKTERRVVEVINKL------MWLASVCTTVAFISSSYIVVGRRNRYAAVV 544

Query:   304 ITLVGCVPVT 313
             +T++G V +T
Sbjct:   545 VTVIGTVTMT 554

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 78/304 (25%), Positives = 145/304 (47%)

Query:    27 ICKGVIWNDPQNQQLLKKAFFKAATLGI----SKFVQEIIAAYKGSVYWEDENKHTIFHV 82
             + K ++  DPQ  + + K    A  + +    S+ V+ ++ A    V   D++ +T  HV
Sbjct:   247 VIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHV 306

Query:    83 AVLHRRAEVFNLIYS-STFKSNWLGSNDNIRNNILHFGGKLVPSSEV-------AGA--A 132
             A   +RAE+  L+ S     +N L  +     +I   G  L   S         +GA  A
Sbjct:   307 ATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAE-GLPLSEESSYIKECLARSGALRA 365

Query:   133 LQMQRKLEWFKA----VENLVHPFLREAVNNEQTPREVFTEEHKELVKEGEKWMKETATA 188
              ++ +  +  ++    ++N VH  L +     +    + ++E ++L +EG   +     +
Sbjct:   366 NELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNI-SKELRKLHREG---INNATNS 421

Query:   189 CSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLG 248
              +VVA    TV FAA FTVPGG+++ G    +  +SF IF + +AL+LF+S+  V++ + 
Sbjct:   422 VTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQIT 481

Query:   249 ILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMM--VSFGATIYLVLFSTWKWVFIPITL 306
             ++      E        K ++++I     +ASM   V+F A+ Y+V+    +W    +T+
Sbjct:   482 LVRGETKAE--------KRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTV 533

Query:   307 VGCV 310
             VG V
Sbjct:   534 VGGV 537

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 70/275 (25%), Positives = 126/275 (45%)

Query:    58 VQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKS----NWLGSN----- 108
             V+E+I A + S+   D   +T  H+A    R+++  L+ ++        N  G       
Sbjct:   219 VEELIKADRSSINIADTKGNTALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTA 278

Query:   109 DNIRNN----ILHFGGKLVPSSE-VAGAALQMQRKLEWFKAVENLVHPFLREAVNNEQTP 163
             + I N     IL   G  VPS++ +  +     R+L+  + V ++ H    +  +   T 
Sbjct:   279 EKIGNPEVALILQKHG--VPSAKTIKPSGPNPARELK--QTVSDIKHEVHNQLEHTRLTR 334

Query:   164 REVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGG--NDSRGIP---- 217
             + V     K+L K   + +     + +VVA  I TV FAA FTVPG    D+  IP    
Sbjct:   335 KRV-QGIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHS 393

Query:   218 ----NFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLIT 273
                 N    + FIIF + D+++LF S+  V++   ++      +  ++++  KL+  L  
Sbjct:   394 LGEANIASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMW-LAC 452

Query:   274 MFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVG 308
             +  S+A + +SF     +V+    KW+ I +T +G
Sbjct:   453 VLISVAFLALSF-----VVVGEEEKWLAIWVTAIG 482

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 73/301 (24%), Positives = 133/301 (44%)

Query:    35 DPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNL 94
             D + Q  L  A  K  +L +   V+EI+ A    +   D   +T  H+A    R ++ +L
Sbjct:   193 DKKGQTALHMAV-KGRSLEV---VEEILQADYTILNERDRKGNTALHIATRKARPQITSL 248

Query:    95 IYSSTFKSNWLGSNDNIRNNILHFGGKLVPSS---EVAGAALQMQRKLEWF--------- 142
             +   TF +  + + +N +   +    KL  S    E+  A ++   K   F         
Sbjct:   249 LL--TFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARA 306

Query:   143 --KAVENLVHPFLREAVNNEQTPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVM 200
               +AV ++ H    + + NE+T R V +   KEL K   + ++ T  + +VVA    ++ 
Sbjct:   307 LKRAVSDIKHEVQSQLLQNEKTNRRV-SGIAKELRKLHREAVQNTTNSITVVAVLFASIA 365

Query:   201 FAAAFTVPGGNDSRGI----PNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSE 256
             F A F +PG   + G      N    + F +F + +A SLF S+  V++ + ++      
Sbjct:   366 FLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRA 425

Query:   257 EDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCVPVTLFA 316
             +  ++S+  KL      M+ + A    +F A  + V+     W+ I ITL+G  P+ +  
Sbjct:   426 QKKVVSVVNKL------MWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGA-PILVGT 478

Query:   317 L 317
             L
Sbjct:   479 L 479

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 39/139 (28%), Positives = 66/139 (47%)

Query:   169 EEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGG-----NDSRGIPNFLHES 223
             E HKE      + ++      +VVA  I +V FA     PGG       S+G        
Sbjct:   197 ESHKEESVMHSEALQNARNTITVVAILIASVTFAVGMNPPGGIYQESTSSKGKSVAAKTV 256

Query:   224 SFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMV 283
             +F IF VS++++LF+S+  V++ + I+  +        SL   L+I    M  S+A++  
Sbjct:   257 AFKIFYVSNSIALFTSLWIVILLVSIIPFKPK------SLKNVLVITHKMMSVSVAALAT 310

Query:   284 SFGATIYLVL--FSTWKWV 300
             S+ A  +++L  F   KW+
Sbjct:   311 SYVAVGWIILPHFEGTKWL 329

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030147001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (366 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	339
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-26

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  100 bits (252), Expect = 2e-26
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 179 EKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSR------GIPNFL-HESSFIIFAVS 231
            +W+++T  +  VVA  I TV FAA FT PGG          G P        F  F VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 232 DALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYL 291
           + ++  +S+++V++ L I+ S       LL+L       L  ++ S+ S+MV+F A  Y 
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLLAL-------LTLLWLSLLSLMVAFAAGSYR 113

Query: 292 V 292
           V
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
PF13962	113	PGG: Domain of unknown function	99.93
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.78
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.69
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.66
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.62
PHA02741	169	hypothetical protein; Provisional	99.59
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.54
PHA02946	446	ankyin-like protein; Provisional	99.53
PHA02859	209	ankyrin repeat protein; Provisional	99.51
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.51
KOG0510	929	consensus Ankyrin repeat protein [General function	99.51
PHA02791	284	ankyrin-like protein; Provisional	99.49
PHA02791	284	ankyrin-like protein; Provisional	99.49
PHA02874	434	ankyrin repeat protein; Provisional	99.49
PHA02874	434	ankyrin repeat protein; Provisional	99.48
PHA02743	166	Viral ankyrin protein; Provisional	99.48
PHA02875	413	ankyrin repeat protein; Provisional	99.48
PHA02878	477	ankyrin repeat protein; Provisional	99.47
PHA02884	300	ankyrin repeat protein; Provisional	99.47
PHA02741	169	hypothetical protein; Provisional	99.45
KOG0508	615	consensus Ankyrin repeat protein [General function	99.44
KOG0510	929	consensus Ankyrin repeat protein [General function	99.44
PHA02736	154	Viral ankyrin protein; Provisional	99.42
PHA02875	413	ankyrin repeat protein; Provisional	99.42
PHA02743	166	Viral ankyrin protein; Provisional	99.42
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.41
PHA03100	480	ankyrin repeat protein; Provisional	99.4
PHA02878	477	ankyrin repeat protein; Provisional	99.39
KOG0508	615	consensus Ankyrin repeat protein [General function	99.39
PHA03095	471	ankyrin-like protein; Provisional	99.38
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.36
PHA02989	494	ankyrin repeat protein; Provisional	99.36
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.34
PHA02859	209	ankyrin repeat protein; Provisional	99.34
PHA02798	489	ankyrin-like protein; Provisional	99.33
PHA02736	154	Viral ankyrin protein; Provisional	99.33
PHA03095	471	ankyrin-like protein; Provisional	99.33
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.32
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.32
PHA02876	682	ankyrin repeat protein; Provisional	99.32
PHA02876	682	ankyrin repeat protein; Provisional	99.31
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.31
PHA03100	480	ankyrin repeat protein; Provisional	99.3
KOG0514	452	consensus Ankyrin repeat protein [General function	99.29
PHA02798	489	ankyrin-like protein; Provisional	99.27
PHA02884	300	ankyrin repeat protein; Provisional	99.27
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.27
PHA02989	494	ankyrin repeat protein; Provisional	99.27
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.26
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.25
PHA02795	437	ankyrin-like protein; Provisional	99.24
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.24
PHA02795	437	ankyrin-like protein; Provisional	99.24
PHA02946	446	ankyin-like protein; Provisional	99.23
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.22
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.21
PHA02917	661	ankyrin-like protein; Provisional	99.18
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.16
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.15
PHA02730	672	ankyrin-like protein; Provisional	99.15
KOG0514	452	consensus Ankyrin repeat protein [General function	99.09
PHA02730	672	ankyrin-like protein; Provisional	99.09
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.08
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.04
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.04
PHA02917	661	ankyrin-like protein; Provisional	99.04
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.02
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.0
PHA02792	631	ankyrin-like protein; Provisional	98.98
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.97
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.96
PHA02792	631	ankyrin-like protein; Provisional	98.95
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.93
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.92
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.91
KOG0512	228	consensus Fetal globin-inducing factor (contains a	98.89
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.87
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.86
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.84
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.77
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.73
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.68
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.54
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.44
PF13606	30	Ank_3: Ankyrin repeat	98.35
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.3
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.2
PF13606	30	Ank_3: Ankyrin repeat	98.16
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.15
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.09
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.07
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.05
KOG0522	560	consensus Ankyrin repeat protein [General function	98.02
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.0
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.0
KOG0522	560	consensus Ankyrin repeat protein [General function	97.97
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.92
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.86
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.75
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.7
KOG2384	223	consensus Major histocompatibility complex protein	97.69
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.64
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.49
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.45
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.34
KOG0783	1267	consensus Uncharacterized conserved protein, conta	96.98
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.79
KOG0511	516	consensus Ankyrin repeat protein [General function	96.55
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.46
KOG2384	223	consensus Major histocompatibility complex protein	96.1
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.26
KOG0521	785	consensus Putative GTPase activating proteins (GAP	95.04
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	94.9
KOG2505	591	consensus Ankyrin repeat protein [General function	93.87
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	92.86
KOG0511	516	consensus Ankyrin repeat protein [General function	91.34
KOG2505	591	consensus Ankyrin repeat protein [General function	89.14

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=3.1e-25  Score=176.96  Aligned_cols=108  Identities=40%  Similarity=0.688  Sum_probs=94.2

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHhhcCCCCCCC----CCcccccCcc-hhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047454          179 EKWMKETATACSVVAAFIITVMFAAAFTVPGGNDS----RGIPNFLHES-SFIIFAVSDALSLFSSIISVLMFLGILTSR  253 (339)
Q Consensus       179 ~~~~~~~~~s~~vvA~LIATvtfaa~ft~Pgg~~~----~G~~~l~~~~-~f~~F~~~nt~a~~~S~~~~~~~~~~~~~~  253 (339)
                      +||++++++++++||+|||||||||+++||||+++    .|+|++.+++ .|++|+++|++||++|+.+++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            47999999999999999999999999999999954    6999998877 999999999999999999998876322   


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 047454          254 YSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLV  292 (339)
Q Consensus       254 ~~~~~~~~~l~~~l~~~~~~~~~s~~~m~~af~~~~~~v  292 (339)
                         .++.+..++.+.++..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               334444455677889999999999999999999975

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.4e-19  Score=147.43  Aligned_cols=103  Identities=18%  Similarity=0.129  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHH-CCCCcccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           19 QAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAA-YKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        19 ~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~-~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      ...+|+..|+++.+..+++.|..||||||+||..|+.++|+.|+.+ +++ .+..+..|+|+||+|+-+|+.++.++|++
T Consensus        49 g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle  127 (226)
T KOG4412|consen   49 GHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLE  127 (226)
T ss_pred             CchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHh
Confidence            4568888888866666666689999999999999999999999988 555 46688899999999999999999999999


Q ss_pred             ccCccccccccccCCCchHHHhhhcCCC
Q 047454           98 STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        98 ~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .++   .+..+|..|.||||-|+..|..
T Consensus       128 ~ga---~i~~kD~~~qtplHRAAavGkl  152 (226)
T KOG4412|consen  128 KGA---LIRIKDKQGQTPLHRAAAVGKL  152 (226)
T ss_pred             cCC---CCcccccccCchhHHHHhccch
Confidence            885   4556699999999999999885

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=7.6e-17  Score=134.14  Aligned_cols=100  Identities=16%  Similarity=0.068  Sum_probs=88.9

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++|+.|+.+-+.|++.....|.||||+||.+|..++.+.|++.+ ..+..+|..|+||||-|+..|+.+++++|+..++ 
T Consensus        86 evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~~a-  163 (226)
T KOG4412|consen   86 EVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA-  163 (226)
T ss_pred             HHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcC-CCCcccccccCchhHHHHhccchhhHHHHHhcCC-
Confidence            78888888866666666899999999999999999999999987 5567799999999999999999999999999975 


Q ss_pred             cccccccccCCCchHHHhhhcCCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                        .++.+|..|+||||.|...|+.
T Consensus       164 --~~n~qDk~G~TpL~~al~e~~~  185 (226)
T KOG4412|consen  164 --PLNTQDKYGFTPLHHALAEGHP  185 (226)
T ss_pred             --CCCcccccCccHHHHHHhccCc
Confidence              5777899999999999777774

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.66  E-value=4.3e-15  Score=144.49  Aligned_cols=149  Identities=19%  Similarity=0.141  Sum_probs=107.9

Q ss_pred             hHHHH----HHHHHHHhccCCCCcccc-ccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHH
Q 047454           17 NMQAV----EIVRIICKGVIWNDPQNQ-QLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEV   91 (339)
Q Consensus        17 ~~~a~----~iv~~L~~~~~~~~~~~d-~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~i   91 (339)
                      |.+|+    +++++|+++. .|++..+ .-+.||||+||++|+..+|..|++++++. ..+|.+|.||||+|++.++.-.
T Consensus        83 HWAAiNNrl~v~r~li~~g-advn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~  160 (600)
T KOG0509|consen   83 HWAAINNRLDVARYLISHG-ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTAL  160 (600)
T ss_pred             eHHHHcCcHHHHHHHHHcC-CCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHH
Confidence            77776    7899999986 3334333 56789999999999999999999998875 5699999999999999999999


Q ss_pred             HHHHHcccCccccccccccCCCchHHHhhhcCCCCCcc-----hhhhhhhH------hhhHHHHHHh-----hcc--hhH
Q 047454           92 FNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVA-----GAALQMQR------KLEWFKAVEN-----LVH--PFL  153 (339)
Q Consensus        92 v~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~~~v~-----~~~l~~~~------~l~~~~~v~~-----~~~--~~~  153 (339)
                      +-+++..+.   ..+.+|++|.||||+|+.+|+...+.     ++.+...+      -+.|.-.-.+     ++.  ...
T Consensus       161 vayll~~~~---d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~  237 (600)
T KOG0509|consen  161 VAYLLSKGA---DIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD  237 (600)
T ss_pred             HHHHHHhcc---cCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence            999998874   35566999999999999999853210     11111111      2344321110     111  123


Q ss_pred             HHhhc-CCCCcchhchHH
Q 047454          154 REAVN-NEQTPREVFTEE  170 (339)
Q Consensus       154 ~~~~n-~g~tp~dl~~~~  170 (339)
                      .+..| +|+||.|+++++
T Consensus       238 ~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  238 LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccCCCCHHHHHHHh
Confidence            45667 999999998776

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.62  E-value=2.5e-15  Score=124.27  Aligned_cols=129  Identities=16%  Similarity=0.049  Sum_probs=97.9

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ..|+.|++...-..+.+|.+|.||||.|+.+||.+++++|+..+++. +.+...||||||-||+..+.+++.+|++.|+ 
T Consensus        77 ~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~va~~LLqhga-  154 (228)
T KOG0512|consen   77 TEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFEVAGRLLQHGA-  154 (228)
T ss_pred             HHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchhHHHHHHhccC-
Confidence            45666666542224455999999999999999999999999887664 5578899999999999999999999999987 


Q ss_pred             cccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcchh--HHHhhc-CCCCcchhchHH
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPF--LREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~~~--~~~~~n-~g~tp~dl~~~~  170 (339)
                        .++++.+...||||+|+...+...                .++.++...  ....+| .+.||.+++...
T Consensus       155 --DVnA~t~g~ltpLhlaa~~rn~r~----------------t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  155 --DVNAQTKGLLTPLHLAAGNRNSRD----------------TLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             --cccccccccchhhHHhhcccchHH----------------HHHHHhhccccChhhhcCccchHHHHHHHh
Confidence              477777888999999999887411                111111111  123456 899999997654

>PHA02741 hypothetical protein; Provisional

Probab=99.59  E-value=7.6e-15  Score=125.48  Aligned_cols=113  Identities=14%  Similarity=0.159  Sum_probs=87.3

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHC-----CCCcccccCCCchHhhHHHHcCC----hHHHHHHHcccCccccccccc
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAY-----KGSVYWEDENKHTIFHVAVLHRR----AEVFNLIYSSTFKSNWLGSND  109 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~-----p~~~~~~d~~G~t~LH~A~~~~~----~~iv~~Ll~~~~~~~~~~~~D  109 (339)
                      |.+|.||||+|++.|+.++++.|+...     +..++.+|..|+||||+|+.+++    .+++++|++.++   .++.+|
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga---din~~~   94 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA---DINAQE   94 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC---CCCCCC
Confidence            778999999999999999999986532     23356789999999999999998    588999999875   356666


Q ss_pred             c-CCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc--chhHHHhhc-CCCCcchhchHHH
Q 047454          110 N-IRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV--HPFLREAVN-NEQTPREVFTEEH  171 (339)
Q Consensus       110 ~-~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~--~~~~~~~~n-~g~tp~dl~~~~~  171 (339)
                      . +|+||||+|+..++.+                 .++.++  +....+..| +|.||++++....
T Consensus        95 ~~~g~TpLh~A~~~~~~~-----------------iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~  143 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHD-----------------LAEWLCCQPGIDLHFCNADNKSPFELAIDNE  143 (169)
T ss_pred             cCCCCCHHHHHHHcCCHH-----------------HHHHHHhCCCCCCCcCCCCCCCHHHHHHHCC
Confidence            4 9999999999999841                 222222  123345667 9999999876643

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.54  E-value=1.7e-14  Score=140.35  Aligned_cols=108  Identities=11%  Similarity=-0.009  Sum_probs=87.8

Q ss_pred             HHhhhhhHHHHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCccccc-CCCchHhhHHHHcCCh
Q 047454           11 HKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWED-ENKHTIFHVAVLHRRA   89 (339)
Q Consensus        11 ~~~~~~~~~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d-~~G~t~LH~A~~~~~~   89 (339)
                      ++.+.++.+   -++.+++....+.++.|++|-|+||+||-+++.+++++|++++++... .+ .-|.||||+|+++|+.
T Consensus        50 ~A~q~G~l~---~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~-~gG~l~stPLHWAar~G~~  125 (600)
T KOG0509|consen   50 KATQYGELE---TVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNA-IGGVLGSTPLHWAARNGHI  125 (600)
T ss_pred             hHhhcchHH---HHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccc-cCCCCCCCcchHHHHcCcH
Confidence            445554443   345555553334444588999999999999999999999999887544 54 6789999999999999


Q ss_pred             HHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           90 EVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        90 ~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .++.+|++.|++   ++.+|.+|.||||+|++.++.
T Consensus       126 ~vv~lLlqhGAd---pt~~D~~G~~~lHla~~~~~~  158 (600)
T KOG0509|consen  126 SVVDLLLQHGAD---PTLKDKQGLTPLHLAAQFGHT  158 (600)
T ss_pred             HHHHHHHHcCCC---CceecCCCCcHHHHHHHhCch
Confidence            999999999985   566799999999999999996

>PHA02946 ankyin-like protein; Provisional

Probab=99.53  E-value=4.1e-14  Score=138.87  Aligned_cols=91  Identities=12%  Similarity=0.055  Sum_probs=72.3

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC--hHHHHHHHccc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR--AEVFNLIYSST   99 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~--~~iv~~Ll~~~   99 (339)
                      ++++.|++.+ .+++..|.+|+||||+|++.|+.++++.|++.+++. +.+|.+|+||||+|+..++  .+++++|++.|
T Consensus        53 ~iv~~Ll~~G-advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G  130 (446)
T PHA02946         53 RFVEELLHRG-YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLVQYG  130 (446)
T ss_pred             HHHHHHHHCc-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            6888888875 444455999999999999999999999999988765 5689999999999988764  68899999887


Q ss_pred             Ccccccccc-ccCCCchHH
Q 047454          100 FKSNWLGSN-DNIRNNILH  117 (339)
Q Consensus       100 ~~~~~~~~~-D~~GnTpLH  117 (339)
                      ++   ++.. |.+|.||||
T Consensus       131 ad---in~~~d~~g~tpL~  146 (446)
T PHA02946        131 AK---INNSVDEEGCGPLL  146 (446)
T ss_pred             CC---cccccCCCCCcHHH
Confidence            53   3332 555555555

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.51  E-value=8.3e-14  Score=123.18  Aligned_cols=79  Identities=14%  Similarity=0.196  Sum_probs=43.2

Q ss_pred             cccCCcHHHHHHHCC--cHHHHHHHHHHCCCCccccc-CCCchHhhHHHHc---CChHHHHHHHcccCccccccccccCC
Q 047454           39 QQLLKKAFFKAATLG--ISKFVQEIIAAYKGSVYWED-ENKHTIFHVAVLH---RRAEVFNLIYSSTFKSNWLGSNDNIR  112 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G--~~~iv~~Ll~~~p~~~~~~d-~~G~t~LH~A~~~---~~~~iv~~Ll~~~~~~~~~~~~D~~G  112 (339)
                      |..|.||||+|+.++  +.++++.|++.+++... +| ..|+||||+|+..   ++.+++++|++.|+   .++.+|.+|
T Consensus        48 ~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~-~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~ga---din~~d~~G  123 (209)
T PHA02859         48 NDLYETPIFSCLEKDKVNVEILKFLIENGADVNF-KTRDNNLSALHHYLSFNKNVEPEILKILIDSGS---SITEEDEDG  123 (209)
T ss_pred             CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc-cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCC---CCCCcCCCC
Confidence            455666666665533  56666666665555422 33 3566666665542   24566666666554   234446666


Q ss_pred             CchHHHhhh
Q 047454          113 NNILHFGGK  121 (339)
Q Consensus       113 nTpLHlA~~  121 (339)
                      .||||+|+.
T Consensus       124 ~TpLh~a~~  132 (209)
T PHA02859        124 KNLLHMYMC  132 (209)
T ss_pred             CCHHHHHHH
Confidence            666666554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.51  E-value=4.6e-14  Score=125.41  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=89.4

Q ss_pred             ccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCch
Q 047454           36 PQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNI  115 (339)
Q Consensus        36 ~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTp  115 (339)
                      +.-|..|.+|||+||+.||..+++.|+.++.. ++..+.-..||||+|+.+|+.++|+.|++..+   .+++.+..||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~ka---dvnavnehgntp  103 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA---DVNAVNEHGNTP  103 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHhc---ccchhhccCCCc
Confidence            33388999999999999999999999998765 45577777899999999999999999999854   477779999999


Q ss_pred             HHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchH
Q 047454          116 LHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       116 LHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~  169 (339)
                      ||+|+..|..                 ...|.++. .....+.| +|.||.|-+..
T Consensus       104 lhyacfwgyd-----------------qiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  104 LHYACFWGYD-----------------QIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             hhhhhhhcHH-----------------HHHHHHHhccceeeecccCCCCchhhhch
Confidence            9999999873                 11222221 22345677 89999887654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.51  E-value=3.8e-14  Score=140.74  Aligned_cols=101  Identities=16%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             HHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHH-HCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCcc
Q 047454           24 VRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIA-AYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKS  102 (339)
Q Consensus        24 v~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~-~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~  102 (339)
                      ++.|+.. +.+.+..++++.||||.||+.|+.+.|+.|++ .+--..+..|..|.||||+|+.+||.++++.|+++|+..
T Consensus       289 vd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~  367 (929)
T KOG0510|consen  289 VDNLLGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF  367 (929)
T ss_pred             HHHHHHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh
Confidence            3344433 44444446777788888888888888888887 333345556777888888888888888888888887531


Q ss_pred             ccccccccCCCchHHHhhhcCCC
Q 047454          103 NWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       103 ~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ......|.+|+||||+|+..|+.
T Consensus       368 ~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  368 LNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             hcccccccCCchhhhHHHHhccH
Confidence            11111288888888888888875

>PHA02791 ankyrin-like protein; Provisional

Probab=99.49  E-value=1.3e-13  Score=127.08  Aligned_cols=98  Identities=10%  Similarity=0.005  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcc
Q 047454           19 QAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS   98 (339)
Q Consensus        19 ~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~   98 (339)
                      .+.++++.|++.. .+  ..|.+|+||||+|++.|+.++++.|++.+++. +..  +|+||||+|+.+|+.+++++|++.
T Consensus        10 ~~~~~~~~Lis~~-a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791         10 KSKQLKSFLSSKD-AF--KADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             CHHHHHHHHHhCC-CC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            4567788888763 22  23778899999999999999999988877653 222  468999999999999999999888


Q ss_pred             cCccccccccccCCCchHHHhhhcCCC
Q 047454           99 TFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        99 ~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ++   .++.+|.+|+||||+|+..|+.
T Consensus        84 Ga---dvn~~d~~G~TpLh~Aa~~g~~  107 (284)
T PHA02791         84 GM---DDSQFDDKGNTALYYAVDSGNM  107 (284)
T ss_pred             CC---CCCCCCCCCCCHHHHHHHcCCH
Confidence            75   3555688899999999988875

>PHA02791 ankyrin-like protein; Provisional

Probab=99.49  E-value=1.5e-13  Score=126.80  Aligned_cols=97  Identities=14%  Similarity=0.013  Sum_probs=70.1

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.|++.. .+.+  ..+|+||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+..|+.+++++|++.++ 
T Consensus        44 eiv~~Ll~~g-a~~n--~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ga-  118 (284)
T PHA02791         44 RLVCTLLNAG-ALKN--LLENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-  118 (284)
T ss_pred             HHHHHHHHCc-CCCc--CCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence            5666666664 2222  124678888888888888888888776553 4578888888888888888888888888775 


Q ss_pred             cccccccccCC-CchHHHhhhcCCC
Q 047454          102 SNWLGSNDNIR-NNILHFGGKLVPS  125 (339)
Q Consensus       102 ~~~~~~~D~~G-nTpLHlA~~~~~~  125 (339)
                        .++.+|.+| +||||+|+..|+.
T Consensus       119 --din~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791        119 --RLMFYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             --CcCccCCCCCcHHHHHHHHcCCH
Confidence              244456666 4888888888874

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.49  E-value=1.1e-13  Score=135.66  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=80.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.+++.. .+.+..|.+|.||||+|++.|+.++++.|++.+++. +.+|..|+||||+|+.+++.+++++|++.++
T Consensus       104 ~~~i~~ll~~g-~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~  181 (434)
T PHA02874        104 KDMIKTILDCG-IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA  181 (434)
T ss_pred             HHHHHHHHHCc-CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC
Confidence            46777777774 333444888999999999999999999999887764 5578889999999999999999999998875


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++..|.+|+||||+|+..|+.
T Consensus       182 ---~~n~~~~~g~tpL~~A~~~g~~  203 (434)
T PHA02874        182 ---YANVKDNNGESPLHNAAEYGDY  203 (434)
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCH
Confidence               2445588899999999988875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.48  E-value=1.7e-13  Score=134.26  Aligned_cols=126  Identities=12%  Similarity=0.000  Sum_probs=98.9

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|++.|+.++++.|++.+++. +..|..|+||||+|+..|+.+++++|++.++
T Consensus       137 ~~~v~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~  214 (434)
T PHA02874        137 LESIKMLFEYG-ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGN  214 (434)
T ss_pred             HHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            46788888875 333334889999999999999999999999987664 4578999999999999999999999999985


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcchhHHHhhc-CCCCcchhchH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n-~g~tp~dl~~~  169 (339)
                         .+..+|.+|.||||.|+..++.                  .++.++.....+..+ +|.||+..+..
T Consensus       215 ---~i~~~~~~g~TpL~~A~~~~~~------------------~i~~Ll~~~~in~~d~~G~TpLh~A~~  263 (434)
T PHA02874        215 ---HIMNKCKNGFTPLHNAIIHNRS------------------AIELLINNASINDQDIDGSTPLHHAIN  263 (434)
T ss_pred             ---CCcCCCCCCCCHHHHHHHCChH------------------HHHHHHcCCCCCCcCCCCCCHHHHHHh
Confidence               3555688999999999987541                  122222222344566 99999988765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.48  E-value=1.9e-13  Score=116.55  Aligned_cols=99  Identities=11%  Similarity=0.074  Sum_probs=78.3

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHH---HHHHHHHCCCCccccc-CCCchHhhHHHHcCChHHHHHHHc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKF---VQEIIAAYKGSVYWED-ENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~i---v~~Ll~~~p~~~~~~d-~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      ++++.+.+.. .+.+..|.+|+||||+|+..|+.+.   ++.|++.+.+. +.+| ..|+||||+|+.+++.+++++|++
T Consensus        38 ~~~~~l~~~g-~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~  115 (166)
T PHA02743         38 EVAPFISGDG-HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCR  115 (166)
T ss_pred             HHHHHHhhcc-hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            4555555543 2333448899999999999998654   78899887664 5577 589999999999999999999995


Q ss_pred             -ccCccccccccccCCCchHHHhhhcCCC
Q 047454           98 -STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        98 -~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                       .+.   .++.+|.+|.||||+|+..++.
T Consensus       116 ~~ga---d~~~~d~~g~tpL~~A~~~~~~  141 (166)
T PHA02743        116 QLGV---NLGAINYQHETAYHIAYKMRDR  141 (166)
T ss_pred             ccCC---CccCcCCCCCCHHHHHHHcCCH
Confidence             564   3555699999999999999884

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.48  E-value=1.6e-13  Score=133.42  Aligned_cols=59  Identities=8%  Similarity=-0.115  Sum_probs=26.5

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcc
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS   98 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~   98 (339)
                      +.+|.||||+|+..|+.++++.|++.+.+. +..+.+|+||||.|+..|+.+++++|++.
T Consensus        32 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~   90 (413)
T PHA02875         32 IYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDL   90 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence            444555555555555555555555443321 22333344444444444444444444443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.47  E-value=1.7e-13  Score=135.85  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=83.1

Q ss_pred             HHHHHHHhccCCCCcccccc-CCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           22 EIVRIICKGVIWNDPQNQQL-LKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~-g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      ++++.|++.+ .+.+..|.+ |+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..++.+++++|++.|+
T Consensus       148 ~iv~~Ll~~g-adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga  225 (477)
T PHA02878        148 EITKLLLSYG-ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGA  225 (477)
T ss_pred             HHHHHHHHcC-CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            4788888775 334444777 999999999999999999999988774 5689999999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhhhcC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLV  123 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~  123 (339)
                         .++.+|.+|+||||+|+..+
T Consensus       226 ---~in~~d~~g~TpLh~A~~~~  245 (477)
T PHA02878        226 ---STDARDKCGNTPLHISVGYC  245 (477)
T ss_pred             ---CCCCCCCCCCCHHHHHHHhc
Confidence               35666999999999999764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.47  E-value=2.5e-13  Score=125.60  Aligned_cols=102  Identities=14%  Similarity=0.057  Sum_probs=84.9

Q ss_pred             HHHHHHHHhcc-CCCCccc--cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           21 VEIVRIICKGV-IWNDPQN--QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~--d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      .++++.|++.+ +.+....  |.+|.||||+|++.|+.++++.|++.+++.....+..|.||||+|+.+++.+++++|++
T Consensus        46 ~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~  125 (300)
T PHA02884         46 TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLS  125 (300)
T ss_pred             HHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            47888999886 5444311  46899999999999999999999999887543235689999999999999999999999


Q ss_pred             ccCccccccccccCCCchHHHhhhcCCC
Q 047454           98 STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        98 ~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .|+   .++.+|.+|.||||+|+..++.
T Consensus       126 ~GA---din~kd~~G~TpL~~A~~~~~~  150 (300)
T PHA02884        126 YGA---DINIQTNDMVTPIELALMICNN  150 (300)
T ss_pred             CCC---CCCCCCCCCCCHHHHHHHhCCh
Confidence            986   3566699999999999987764

>PHA02741 hypothetical protein; Provisional

Probab=99.45  E-value=5.7e-13  Score=113.86  Aligned_cols=89  Identities=9%  Similarity=-0.012  Sum_probs=74.6

Q ss_pred             CCCccccccCCcHHHHHHHCCc----HHHHHHHHHHCCCCcccccC-CCchHhhHHHHcCChHHHHHHHcc-cCcccccc
Q 047454           33 WNDPQNQQLLKKAFFKAATLGI----SKFVQEIIAAYKGSVYWEDE-NKHTIFHVAVLHRRAEVFNLIYSS-TFKSNWLG  106 (339)
Q Consensus        33 ~~~~~~d~~g~tpLh~Aa~~G~----~~iv~~Ll~~~p~~~~~~d~-~G~t~LH~A~~~~~~~iv~~Ll~~-~~~~~~~~  106 (339)
                      .+.+..|.+|+||||+|+..|+    .++++.|++.+++. +.+|. +|+||||+|+.+++.+++++|++. +.   .++
T Consensus        51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~---~~~  126 (169)
T PHA02741         51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGI---DLH  126 (169)
T ss_pred             hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCC
Confidence            4445558899999999999999    58889999887775 55664 899999999999999999999974 53   345


Q ss_pred             ccccCCCchHHHhhhcCCC
Q 047454          107 SNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       107 ~~D~~GnTpLHlA~~~~~~  125 (339)
                      ..|.+|.||||+|+..++.
T Consensus       127 ~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741        127 FCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             cCCCCCCCHHHHHHHCCCH
Confidence            5599999999999999873

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=1.5e-13  Score=129.37  Aligned_cols=100  Identities=11%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++|+.|++.. .+.+.......|||--||..|+.+++++|++.+.|. +..|..|+|.||+|+.+|+.+++++|++.|+
T Consensus        97 l~vVk~L~~~g-a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gA  174 (615)
T KOG0508|consen   97 LEVVKLLLRRG-ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGA  174 (615)
T ss_pred             HHHHHHHHHhc-CccccccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCC
Confidence            36777777776 333333556678888888888888888888776664 5578888888888888888888888888876


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.++..|||+||.+++.|+.
T Consensus       175 ---Dvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  175 ---DVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             ---CcchhcccCchHHHhhhhcccH
Confidence               3666688888888888888874

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=2.1e-13  Score=135.61  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=75.2

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHc-ccCccccccccccCCCchHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS-STFKSNWLGSNDNIRNNILH  117 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~-~~~~~~~~~~~D~~GnTpLH  117 (339)
                      |.+|.||||+||++|+.+.++.|+..+.+ ++.++.++.||||.||.+|+.+.++.|++ .+  ...++..|..|+||||
T Consensus       270 d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~--~rllne~D~~g~tpLH  346 (929)
T KOG0510|consen  270 DNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQESD--TRLLNESDLHGMTPLH  346 (929)
T ss_pred             cccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHhCcC--ccccccccccCCCchh
Confidence            88999999999999999999999998766 57799999999999999999999999999 43  3344444999999999


Q ss_pred             HhhhcCCCC
Q 047454          118 FGGKLVPSS  126 (339)
Q Consensus       118 lA~~~~~~~  126 (339)
                      +|++.||..
T Consensus       347 laa~~gH~~  355 (929)
T KOG0510|consen  347 LAAKSGHDR  355 (929)
T ss_pred             hhhhcCHHH
Confidence            999999953

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.42  E-value=1.9e-13  Score=114.86  Aligned_cols=112  Identities=13%  Similarity=0.015  Sum_probs=77.4

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHH----HCCCCcccccCCCchHhhHHHHcCChH---HHHHHHcccCccccccccc-c
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIA----AYKGSVYWEDENKHTIFHVAVLHRRAE---VFNLIYSSTFKSNWLGSND-N  110 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~----~~p~~~~~~d~~G~t~LH~A~~~~~~~---iv~~Ll~~~~~~~~~~~~D-~  110 (339)
                      |.+|.||||+|++.|+...+.....    ..+.....+|.+|+||||+|+..++.+   ++++|++.++   .++.+| .
T Consensus        14 d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga---din~~~~~   90 (154)
T PHA02736         14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA---DINGKERV   90 (154)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC---CccccCCC
Confidence            7889999999999998432211111    112234456889999999999999874   6788888875   356666 5


Q ss_pred             CCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc--hhHHHhhc-CCCCcchhchHH
Q 047454          111 IRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH--PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       111 ~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~--~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +|+||||+|+..++.                 +.++.++.  ....+..| .|.||+.++...
T Consensus        91 ~g~T~Lh~A~~~~~~-----------------~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~  136 (154)
T PHA02736         91 FGNTPLHIAVYTQNY-----------------ELATWLCNQPGVNMEILNYAFKTPYYVACER  136 (154)
T ss_pred             CCCcHHHHHHHhCCH-----------------HHHHHHHhCCCCCCccccCCCCCHHHHHHHc
Confidence            899999999999883                 12222221  22345567 899999887653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.42  E-value=7.6e-13  Score=128.65  Aligned_cols=83  Identities=14%  Similarity=0.037  Sum_probs=49.8

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      +.+|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.++   .++.+|..|+||||+
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~---~~~~~d~~g~TpL~~  174 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKA---CLDIEDCCGCTPLII  174 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC---CCCCCCCCCCCHHHH
Confidence            445666666666666666666666655543 3355566666666666666666666666653   233346666666666


Q ss_pred             hhhcCCC
Q 047454          119 GGKLVPS  125 (339)
Q Consensus       119 A~~~~~~  125 (339)
                      |+..|+.
T Consensus       175 A~~~g~~  181 (413)
T PHA02875        175 AMAKGDI  181 (413)
T ss_pred             HHHcCCH
Confidence            6666653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.42  E-value=3.4e-13  Score=114.93  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=85.9

Q ss_pred             CCCCccccccCCcHHHHHHHCCcHH----HHHHHHHHCCCCcccccCCCchHhhHHHHcCChHH---HHHHHcccCcccc
Q 047454           32 IWNDPQNQQLLKKAFFKAATLGISK----FVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEV---FNLIYSSTFKSNW  104 (339)
Q Consensus        32 ~~~~~~~d~~g~tpLh~Aa~~G~~~----iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~i---v~~Ll~~~~~~~~  104 (339)
                      +.|..+.+.++.+++|.||+.|+.+    +++.|++.++ ..+.+|.+|+||||+|+.+|+.+.   +++|++.++   .
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~-~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga---d   85 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGH-LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA---D   85 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcch-hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC---C
Confidence            4455555788999999999999984    4445555443 356689999999999999998654   789999886   3


Q ss_pred             ccccc-cCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc--chhHHHhhc-CCCCcchhchHH
Q 047454          105 LGSND-NIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV--HPFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       105 ~~~~D-~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~--~~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      ++.+| .+|+||||+|+..++.+                 .++.++  .....+..| +|.||+.++...
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~-----------------iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~  138 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYE-----------------LAEWLCRQLGVNLGAINYQHETAYHIAYKM  138 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHH-----------------HHHHHHhccCCCccCcCCCCCCHHHHHHHc
Confidence            56666 58999999999998841                 222222  122345567 999999887553

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.41  E-value=1e-12  Score=138.30  Aligned_cols=76  Identities=16%  Similarity=0.213  Sum_probs=62.0

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      ++++.+++.. .|.+..|.+|+||||+||.+|+.++++.|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.+
T Consensus       539 ~~l~~Ll~~G-~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~  614 (823)
T PLN03192        539 ALLEELLKAK-LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAISAKHHKIFRILYHFA  614 (823)
T ss_pred             HHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcC
Confidence            5677777664 44455599999999999999999999999998766 4668999999999888888888877776543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.40  E-value=1e-12  Score=130.09  Aligned_cols=78  Identities=13%  Similarity=0.023  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhcc-CCCCccccccCCcHHHHHHHCC--cHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHH
Q 047454           20 AVEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLG--ISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIY   96 (339)
Q Consensus        20 a~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G--~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll   96 (339)
                      ..++++.|++.. +.+.  .|.+|.||||.|++.|  +.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|+
T Consensus       120 ~~~iv~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll  196 (480)
T PHA03100        120 SYSIVEYLLDNGANVNI--KNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLL  196 (480)
T ss_pred             hHHHHHHHHHcCCCCCc--cCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHH
Confidence            345555555553 3222  2555666666666666  566666666555443 334555666666666666666666666


Q ss_pred             cccC
Q 047454           97 SSTF  100 (339)
Q Consensus        97 ~~~~  100 (339)
                      +.|+
T Consensus       197 ~~ga  200 (480)
T PHA03100        197 DNGA  200 (480)
T ss_pred             HcCC
Confidence            5553

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.39  E-value=9.1e-13  Score=130.63  Aligned_cols=125  Identities=11%  Similarity=0.047  Sum_probs=94.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHc-CChHHHHHHHccc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLH-RRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~-~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.+ .+.+..|.+|+||||.|++.|+.++++.|++.+++. +.+|..|+||||+|+.. ++.+++++|++.|
T Consensus       181 ~~iv~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g  258 (477)
T PHA02878        181 QRLTELLLSYG-ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHG  258 (477)
T ss_pred             HHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC
Confidence            47888888875 334444899999999999999999999999988764 56899999999999976 6899999999998


Q ss_pred             Cccccccccc-cCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc-chhHHHhhc-CCCCcchhchH
Q 047454          100 FKSNWLGSND-NIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV-HPFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       100 ~~~~~~~~~D-~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n-~g~tp~dl~~~  169 (339)
                      +   .++.+| ..|+||||+|.  ++.+                 .++.++ .....+..+ +|.||++++.+
T Consensus       259 a---dvn~~~~~~g~TpLh~A~--~~~~-----------------~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        259 V---DVNAKSYILGLTALHSSI--KSER-----------------KLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             C---CCCccCCCCCCCHHHHHc--cCHH-----------------HHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            6   355664 48999999993  2210                 111111 112245567 89999988754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=4.6e-13  Score=126.08  Aligned_cols=101  Identities=11%  Similarity=0.023  Sum_probs=88.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .+++++|++.. .|++..|+.|.|.||+||.+||++|+++|++.+.|. +.++.+|.|+||.+++.|+.+++++|+++++
T Consensus       130 leivKyLvE~g-ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga  207 (615)
T KOG0508|consen  130 LEIVKYLVEHG-ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGA  207 (615)
T ss_pred             hHHHHHHHHcC-CCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence            37899999885 444444999999999999999999999999998885 5589999999999999999999999999984


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSE  127 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~  127 (339)
                          ....|..|.|||-.|+..|+.+.
T Consensus       208 ----~i~~d~~GmtPL~~Aa~tG~~~i  230 (615)
T KOG0508|consen  208 ----KIDVDGHGMTPLLLAAVTGHTDI  230 (615)
T ss_pred             ----eeeecCCCCchHHHHhhhcchHH
Confidence                45568999999999999999643

>PHA03095 ankyrin-like protein; Provisional

Probab=99.38  E-value=1.9e-12  Score=127.78  Aligned_cols=101  Identities=14%  Similarity=0.073  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHhccCCCCccccccCCcHHHHHHHCC---cHHHHHHHHHHCCCCcccccCCCchHhhHHHHcC-ChHHH
Q 047454           17 NMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLG---ISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHR-RAEVF   92 (339)
Q Consensus        17 ~~~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G---~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~-~~~iv   92 (339)
                      .....++++.|++.+ .+.+..+..|.||||+|+..|   +.++++.|++.+++. +.+|..|+||||+|+.++ +.+++
T Consensus        23 ~~~~~~~v~~Ll~~g-a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~iv  100 (471)
T PHA03095         23 SNVTVEEVRRLLAAG-ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDVI  100 (471)
T ss_pred             CCCCHHHHHHHHHcC-CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHHH
Confidence            334568889998885 333444888999999999999   999999999988775 558889999999999999 59999


Q ss_pred             HHHHcccCccccccccccCCCchHHHhhhc
Q 047454           93 NLIYSSTFKSNWLGSNDNIRNNILHFGGKL  122 (339)
Q Consensus        93 ~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~  122 (339)
                      ++|++.|+   .++.+|.+|+||||+|+..
T Consensus       101 ~lLl~~ga---~in~~~~~g~tpLh~a~~~  127 (471)
T PHA03095        101 KLLIKAGA---DVNAKDKVGRTPLHVYLSG  127 (471)
T ss_pred             HHHHHcCC---CCCCCCCCCCCHHHHHhhC
Confidence            99999986   3566699999999999943

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.36  E-value=1.8e-12  Score=135.75  Aligned_cols=92  Identities=15%  Similarity=-0.001  Sum_probs=82.1

Q ss_pred             CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccC
Q 047454           32 IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNI  111 (339)
Q Consensus        32 ~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~  111 (339)
                      +.+.+..+.+|+||||.|+..|+.++|+.|++++.++ +.+|+.|+||||.|+..|+.+++.+|+++|+   .++..|.+
T Consensus       530 ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA---~vna~d~~  605 (1143)
T KOG4177|consen  530 GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHGA---SVNAADLD  605 (1143)
T ss_pred             CCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcCC---CCCccccc
Confidence            5556656889999999999999999999999998876 5578999999999999999999999999987   46777999


Q ss_pred             CCchHHHhhhcCCCCC
Q 047454          112 RNNILHFGGKLVPSSE  127 (339)
Q Consensus       112 GnTpLHlA~~~~~~~~  127 (339)
                      |+||||.|++.|+...
T Consensus       606 g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  606 GFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             CcchhHHHHHhcccch
Confidence            9999999999999643

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.36  E-value=2.9e-12  Score=127.57  Aligned_cols=99  Identities=8%  Similarity=-0.071  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhcc-CCCCccccccCCcHHHHHHHC---CcHHHHHHHHHHCCCCcccccCCCchHhhHHHHc--CChHHHH
Q 047454           20 AVEIVRIICKGV-IWNDPQNQQLLKKAFFKAATL---GISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLH--RRAEVFN   93 (339)
Q Consensus        20 a~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~---G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~--~~~~iv~   93 (339)
                      ..++++.|++.+ +.+..  |.+|.||||.|+..   |+.++++.|++.+.+..+.+|..|+||||+|+..  ++.++++
T Consensus        87 ~~~iv~~Ll~~Gadin~~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~  164 (494)
T PHA02989         87 IKKIVKLLLKFGADINLK--TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIK  164 (494)
T ss_pred             HHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHH
Confidence            467888888886 55444  88899999987655   6789999999988776456788999999998764  5789999


Q ss_pred             HHHcccCccccccc-cccCCCchHHHhhhcC
Q 047454           94 LIYSSTFKSNWLGS-NDNIRNNILHFGGKLV  123 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~-~D~~GnTpLHlA~~~~  123 (339)
                      +|++.|++   ++. .|..|.||||.|+..+
T Consensus       165 ~Ll~~Gad---i~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        165 ILLSFGVN---LFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             HHHHcCCC---ccccccccCCChHHHHHhcc
Confidence            99998863   444 3778999999887654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.34  E-value=2.8e-12  Score=97.28  Aligned_cols=72  Identities=18%  Similarity=0.154  Sum_probs=55.3

Q ss_pred             HHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           46 FFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        46 Lh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ||+|++.|+.++++.|++.+++..    . |+||||+|+.+|+.+++++|++.+.   .++.+|.+|+||||+|+..++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~----~-~~~~l~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN----L-GNTALHYAAENGNLEIVKLLLENGA---DINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT----S-SSBHHHHHHHTTTHHHHHHHHHTTT---CTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC----C-CCCHHHHHHHcCCHHHHHHHHHhcc---cccccCCCCCCHHHHHHHcCCH
Confidence            688888888888888888664431    2 7888888888888888888888775   3555578888888888888773

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.34  E-value=6.2e-12  Score=111.22  Aligned_cols=101  Identities=18%  Similarity=0.106  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhccCCCCcccc-ccCCcHHHHHHHC---CcHHHHHHHHHHCCCCcccccCCCchHhhHHHH--cCChHHHH
Q 047454           20 AVEIVRIICKGVIWNDPQNQ-QLLKKAFFKAATL---GISKFVQEIIAAYKGSVYWEDENKHTIFHVAVL--HRRAEVFN   93 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d-~~g~tpLh~Aa~~---G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~--~~~~~iv~   93 (339)
                      ..++++.|++.. .+.+..+ .+|+||||+|+..   |+.++++.|++.+.+. +.+|.+|+||||+|+.  .++.++++
T Consensus        65 ~~eiv~~Ll~~g-advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~  142 (209)
T PHA02859         65 NVEILKFLIENG-ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIK  142 (209)
T ss_pred             CHHHHHHHHHCC-CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHH
Confidence            579999999986 3333334 5799999998763   5799999999887764 6689999999999986  46899999


Q ss_pred             HHHcccCccccccccccCCCchHHHh-hhcCCC
Q 047454           94 LIYSSTFKSNWLGSNDNIRNNILHFG-GKLVPS  125 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~~D~~GnTpLHlA-~~~~~~  125 (339)
                      +|++.++   .++.+|.+|+||||.+ +..++.
T Consensus       143 ~Li~~ga---din~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859        143 LLIDSGV---SFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHHHcCC---CcccccCCCCcHHHHHHHhcCCH
Confidence            9999986   3566799999999965 445553

>PHA02798 ankyrin-like protein; Provisional

Probab=99.33  E-value=4.9e-12  Score=125.81  Aligned_cols=99  Identities=13%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhccCCCCccccccCCcHHHHHHHCC---cHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC---hHHHH
Q 047454           20 AVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLG---ISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR---AEVFN   93 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G---~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~---~~iv~   93 (339)
                      ..++++.|++.+ .|.+..|.+|+||||+|+.+|   +.++++.|++.+++. +.+|.+|.||||+|+..++   .++++
T Consensus        88 ~~~iv~~Ll~~G-adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~  165 (489)
T PHA02798         88 MLDIVKILIENG-ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIK  165 (489)
T ss_pred             HHHHHHHHHHCC-CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHH
Confidence            478999999985 344444889999999999986   789999999998875 5689999999999999988   89999


Q ss_pred             HHHcccCcccccccc-ccCCCchHHHhhhcC
Q 047454           94 LIYSSTFKSNWLGSN-DNIRNNILHFGGKLV  123 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~~-D~~GnTpLHlA~~~~  123 (339)
                      +|++.|++   ++.+ |..|.||||.+...+
T Consensus       166 ~Ll~~gad---in~~~~~~~~t~Lh~~~~~~  193 (489)
T PHA02798        166 LLLEKGVD---INTHNNKEKYDTLHCYFKYN  193 (489)
T ss_pred             HHHHhCCC---cccccCcCCCcHHHHHHHhc
Confidence            99999863   5555 568999999987653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.33  E-value=1.5e-12  Score=109.36  Aligned_cols=84  Identities=7%  Similarity=-0.048  Sum_probs=71.4

Q ss_pred             ccccCCcHHHHHHHCCcHH---HHHHHHHHCCCCccccc-CCCchHhhHHHHcCChHHHHHHHcc-cCccccccccccCC
Q 047454           38 NQQLLKKAFFKAATLGISK---FVQEIIAAYKGSVYWED-ENKHTIFHVAVLHRRAEVFNLIYSS-TFKSNWLGSNDNIR  112 (339)
Q Consensus        38 ~d~~g~tpLh~Aa~~G~~~---iv~~Ll~~~p~~~~~~d-~~G~t~LH~A~~~~~~~iv~~Ll~~-~~~~~~~~~~D~~G  112 (339)
                      .|.+|+||||+|+..|+.+   +++.|++.+.+. +.+| ..|+||||+|+..++.+++++|++. +.   .++.+|..|
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~---d~n~~~~~g  126 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGV---NMEILNYAF  126 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC---CCccccCCC
Confidence            3889999999999999874   688899988765 4466 5899999999999999999999974 43   355569999


Q ss_pred             CchHHHhhhcCCC
Q 047454          113 NNILHFGGKLVPS  125 (339)
Q Consensus       113 nTpLHlA~~~~~~  125 (339)
                      .||||+|+..++.
T Consensus       127 ~tpL~~A~~~~~~  139 (154)
T PHA02736        127 KTPYYVACERHDA  139 (154)
T ss_pred             CCHHHHHHHcCCH
Confidence            9999999998874

>PHA03095 ankyrin-like protein; Provisional

Probab=99.33  E-value=5.1e-12  Score=124.76  Aligned_cols=100  Identities=13%  Similarity=0.078  Sum_probs=82.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcH--HHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGIS--KFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS   98 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~--~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~   98 (339)
                      .++++.|++.. .+++..|.+|+||||+|+..|+.  .+++.+++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.
T Consensus       202 ~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~  279 (471)
T PHA03095        202 ARIVRELIRAG-CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIAL  279 (471)
T ss_pred             HHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            46677777764 44455588999999999999985  577888887665 466889999999999999999999999999


Q ss_pred             cCccccccccccCCCchHHHhhhcCCC
Q 047454           99 TFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        99 ~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      |++   ++.+|.+|+||||+|+..++.
T Consensus       280 gad---~n~~~~~g~tpl~~A~~~~~~  303 (471)
T PHA03095        280 GAD---INAVSSDGNTPLSLMVRNNNG  303 (471)
T ss_pred             CCC---CcccCCCCCCHHHHHHHhCCH
Confidence            863   566699999999999999985

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.32  E-value=5.6e-12  Score=129.14  Aligned_cols=98  Identities=13%  Similarity=0.034  Sum_probs=69.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCc--HHHHHHHHHHCCCCcccccCCCchHhhHH---------------
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGI--SKFVQEIIAAYKGSVYWEDENKHTIFHVA---------------   83 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~--~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A---------------   83 (339)
                      .++++.|++.+ .+.+..|.+|.||||+|++.|+  .++++.|++.+++. +.+|..|+||||.|               
T Consensus       192 ~eIVklLLe~G-ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiL  269 (764)
T PHA02716        192 IDILEWLCNNG-VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIY  269 (764)
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHH
Confidence            36778887775 3333347788888888888885  47888888877664 55788888888865               


Q ss_pred             ----------------------HHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcC
Q 047454           84 ----------------------VLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLV  123 (339)
Q Consensus        84 ----------------------~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~  123 (339)
                                            +.+|+.+++++|++.|+   .++.+|.+|+||||+|+..+
T Consensus       270 ie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA---dIN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        270 IESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV---KLHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             HHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC---ceeccCCCCCCHHHHHHHHh
Confidence                                  33456677777777765   35555888888888876543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.32  E-value=6.8e-11  Score=123.45  Aligned_cols=82  Identities=12%  Similarity=-0.016  Sum_probs=70.6

Q ss_pred             ccCCcHHHHHHHCCcHHHHHHHHHHCCCCccc-------------ccCCCchHhhHHHHcCChHHHHHHHcccCcccccc
Q 047454           40 QLLKKAFFKAATLGISKFVQEIIAAYKGSVYW-------------EDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLG  106 (339)
Q Consensus        40 ~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~-------------~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~  106 (339)
                      ..|.||||+||.+|+.++++.|++++++....             ....|+||||.|+..++.+++++|++.++   .++
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga---din  202 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA---DIL  202 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc---chh
Confidence            56999999999999999999999987664321             12369999999999999999999999976   466


Q ss_pred             ccccCCCchHHHhhhcCC
Q 047454          107 SNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       107 ~~D~~GnTpLHlA~~~~~  124 (339)
                      .+|..|+||||+|+..+.
T Consensus       203 ~~d~~g~T~Lh~A~~~~~  220 (743)
T TIGR00870       203 TADSLGNTLLHLLVMENE  220 (743)
T ss_pred             hHhhhhhHHHHHHHhhhh
Confidence            679999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.32  E-value=8.1e-12  Score=129.17  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           20 AVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      ..++++.|++.+ .+.+..|.+|+||||+||+.|+.++++.|++.+++. +..+.+|.||||.|+..++.++++.+++.+
T Consensus       157 ~~~i~k~Ll~~G-advn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~  234 (682)
T PHA02876        157 ELLIAEMLLEGG-ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNR  234 (682)
T ss_pred             cHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            456777787775 333444889999999999999999999999998774 557889999999999999999999887654


Q ss_pred             Ccc--------------------------ccccccccCCCchHHHhhhcCCC
Q 047454          100 FKS--------------------------NWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~--------------------------~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .+.                          ..++..|.+|+||||+|+..++.
T Consensus       235 ~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~  286 (682)
T PHA02876        235 SNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSL  286 (682)
T ss_pred             CCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCH
Confidence            311                          02334488999999999998874

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.31  E-value=7.4e-12  Score=129.46  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             cccCCcHHHHHHHC-CcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHH
Q 047454           39 QQLLKKAFFKAATL-GISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILH  117 (339)
Q Consensus        39 d~~g~tpLh~Aa~~-G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLH  117 (339)
                      |..|+||||+|+.. ++.++++.|++.+.+ ++.+|..|+||||+|+.+++.+++++|++.|++   ++..|.+|.||||
T Consensus       338 d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad---~~~~~~~g~T~Lh  413 (682)
T PHA02876        338 DRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD---IEALSQKIGTALH  413 (682)
T ss_pred             ccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCCCchHH
Confidence            55555555555543 234444444444333 233455555555555555555555555555432   2223444455555


Q ss_pred             HhhhcC
Q 047454          118 FGGKLV  123 (339)
Q Consensus       118 lA~~~~  123 (339)
                      +|+..+
T Consensus       414 ~A~~~~  419 (682)
T PHA02876        414 FALCGT  419 (682)
T ss_pred             HHHHcC
Confidence            554433

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.31  E-value=5e-12  Score=86.95  Aligned_cols=54  Identities=17%  Similarity=0.183  Sum_probs=44.4

Q ss_pred             CCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHH
Q 047454           42 LKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIY   96 (339)
Q Consensus        42 g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll   96 (339)
                      |+||||+|++.|+.++++.|++.+.+. +.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999998774 557999999999999999999999985

...

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.30  E-value=8.5e-12  Score=123.53  Aligned_cols=98  Identities=10%  Similarity=0.068  Sum_probs=68.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHH-----HHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHH--HcCChHHHH
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFK-----AATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAV--LHRRAEVFN   93 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~-----Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~--~~~~~~iv~   93 (339)
                      .++++.|++.+ .+.+..+.+|.||||+     |+..|+.++++.|++.+++. +..|..|+||||+|+  ..|+.++++
T Consensus        48 ~~ivk~Ll~~g-~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~  125 (480)
T PHA03100         48 IDVVKILLDNG-ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVE  125 (480)
T ss_pred             HHHHHHHHHcC-CCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHH
Confidence            35666666664 3333336667777777     77777777777777777665 556777777777777  777777777


Q ss_pred             HHHcccCccccccccccCCCchHHHhhhcC
Q 047454           94 LIYSSTFKSNWLGSNDNIRNNILHFGGKLV  123 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~  123 (339)
                      +|++.|+   .++..|.+|.||||+|+..+
T Consensus       126 ~Ll~~g~---~~~~~~~~g~t~L~~A~~~~  152 (480)
T PHA03100        126 YLLDNGA---NVNIKNSDGENLLHLYLESN  152 (480)
T ss_pred             HHHHcCC---CCCccCCCCCcHHHHHHHcC
Confidence            7777764   24445777777777777777

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=1.2e-12  Score=119.67  Aligned_cols=111  Identities=13%  Similarity=0.037  Sum_probs=84.6

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCC--------------------------------------CCcccccCCCchHh
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYK--------------------------------------GSVYWEDENKHTIF   80 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p--------------------------------------~~~~~~d~~G~t~L   80 (339)
                      |.+|+|+||+|+.++|.++|+.||+.+-                                      +....-...|+|+|
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTAL  344 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTAL  344 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhh
Confidence            8999999999999999999999998532                                      11111234678899


Q ss_pred             hHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHh--hcchhHHHhhc
Q 047454           81 HVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVEN--LVHPFLREAVN  158 (339)
Q Consensus        81 H~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~--~~~~~~~~~~n  158 (339)
                      ++|+.+|+.++|+.|+..++   .+|.+|.||.|+|.+|+.+||.+                 .++-  ..|.+.....+
T Consensus       345 MLAVSHGr~d~vk~LLacgA---dVNiQDdDGSTALMCA~EHGhkE-----------------ivklLLA~p~cd~sLtD  404 (452)
T KOG0514|consen  345 MLAVSHGRVDMVKALLACGA---DVNIQDDDGSTALMCAAEHGHKE-----------------IVKLLLAVPSCDISLTD  404 (452)
T ss_pred             hhhhhcCcHHHHHHHHHccC---CCccccCCccHHHhhhhhhChHH-----------------HHHHHhccCcccceeec
Confidence            99999999999999999886   47778999999999999999941                 1221  23444555666


Q ss_pred             -CCCCcchhchH
Q 047454          159 -NEQTPREVFTE  169 (339)
Q Consensus       159 -~g~tp~dl~~~  169 (339)
                       +|-|++.++-+
T Consensus       405 ~DgSTAl~IAle  416 (452)
T KOG0514|consen  405 VDGSTALSIALE  416 (452)
T ss_pred             CCCchhhhhHHh
Confidence             99999888644

>PHA02798 ankyrin-like protein; Provisional

Probab=99.27  E-value=1.4e-11  Score=122.54  Aligned_cols=100  Identities=9%  Similarity=-0.002  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhccCCCCccccccCCcHHHHHHHC-----CcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcC---ChHH
Q 047454           20 AVEIVRIICKGVIWNDPQNQQLLKKAFFKAATL-----GISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHR---RAEV   91 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~-----G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~---~~~i   91 (339)
                      ..++++.|++.+ .|.+..|.+|.||||.|+.+     ++.++++.|++.+++ ++.+|..|+||||+|+.++   +.++
T Consensus        50 ~~~iv~~Ll~~G-advn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         50 STDIVKLFINLG-ANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             CHHHHHHHHHCC-CCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHH
Confidence            568999999986 34444489999999999865     779999999999887 4668999999999999986   6799


Q ss_pred             HHHHHcccCccccccccccCCCchHHHhhhcCC
Q 047454           92 FNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        92 v~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      +++|++.|++   ++.+|.+|.||||+|++.++
T Consensus       128 v~~Ll~~Gad---vn~~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798        128 LLFMIENGAD---TTLLDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             HHHHHHcCCC---ccccCCCCCcHHHHHHHcCC
Confidence            9999999863   56669999999999999887

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.27  E-value=1.4e-11  Score=114.06  Aligned_cols=112  Identities=9%  Similarity=0.016  Sum_probs=83.8

Q ss_pred             ccccCCc-HHHHHHHCCcHHHHHHHHHHCCCCccc---ccCCCchHhhHHHHcCChHHHHHHHcccCcccccccc-ccCC
Q 047454           38 NQQLLKK-AFFKAATLGISKFVQEIIAAYKGSVYW---EDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSN-DNIR  112 (339)
Q Consensus        38 ~d~~g~t-pLh~Aa~~G~~~iv~~Ll~~~p~~~~~---~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~-D~~G  112 (339)
                      .|.+|+| +||.|++.|+.++++.|++.+++....   .|..|.||||+|+..++.+++++|++.|++   ++.+ +..|
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD---VN~~~~~~g  104 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD---VNRYAEEAK  104 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cCcccCCCC
Confidence            3677765 556677889999999999998875332   246899999999999999999999999863   5555 5689


Q ss_pred             CchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc-chhHHHhhc-CCCCcchhchH
Q 047454          113 NNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV-HPFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       113 nTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n-~g~tp~dl~~~  169 (339)
                      +||||.|+..++.+                 .++.++ .....+..+ .|.||.+++.+
T Consensus       105 ~TpLh~Aa~~~~~e-----------------ivklLL~~GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884        105 ITPLYISVLHGCLK-----------------CLEILLSYGADINIQTNDMVTPIELALM  146 (300)
T ss_pred             CCHHHHHHHcCCHH-----------------HHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999998842                 122211 112234556 89999988755

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.27  E-value=1.8e-11  Score=128.97  Aligned_cols=84  Identities=13%  Similarity=0.117  Sum_probs=75.0

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      +.++.++||.||..|+.++++.|++.+.+. +..|.+|+||||+|+.+|+.+++++|++.|+   .++.+|.+|+||||+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga---din~~d~~G~TpL~~  597 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHAC---NVHIRDANGNTALWN  597 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCC---CCCCcCCCCCCHHHH
Confidence            446789999999999999999999988774 5689999999999999999999999999886   356669999999999


Q ss_pred             hhhcCCCC
Q 047454          119 GGKLVPSS  126 (339)
Q Consensus       119 A~~~~~~~  126 (339)
                      |+..|+.+
T Consensus       598 A~~~g~~~  605 (823)
T PLN03192        598 AISAKHHK  605 (823)
T ss_pred             HHHhCCHH
Confidence            99999863

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.27  E-value=1.7e-11  Score=122.18  Aligned_cols=79  Identities=5%  Similarity=-0.057  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhccCCCC-ccccccCCcHHHHHHHC--CcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcC----ChHHH
Q 047454           20 AVEIVRIICKGVIWND-PQNQQLLKKAFFKAATL--GISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHR----RAEVF   92 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~-~~~d~~g~tpLh~Aa~~--G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~----~~~iv   92 (339)
                      ..++++.|++.+ .|. +..|.+|+||||+|++.  ++.++++.|++.+++.....|..|.||||+|+.++    +.+++
T Consensus       123 ~~eiv~~Ll~~G-adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv  201 (494)
T PHA02989        123 NCDMLRFLLSKG-INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVI  201 (494)
T ss_pred             cHHHHHHHHHCC-CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHH
Confidence            345566666554 222 22255566666665432  45566666665554433223445555555554432    44555


Q ss_pred             HHHHccc
Q 047454           93 NLIYSST   99 (339)
Q Consensus        93 ~~Ll~~~   99 (339)
                      ++|++.|
T Consensus       202 ~~Ll~~G  208 (494)
T PHA02989        202 KYLIKKG  208 (494)
T ss_pred             HHHHhCC
Confidence            5555544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.26  E-value=4.6e-12  Score=87.84  Aligned_cols=56  Identities=20%  Similarity=0.190  Sum_probs=23.7

Q ss_pred             HHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHh
Q 047454           61 IIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFG  119 (339)
Q Consensus        61 Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA  119 (339)
                      ||+.++..++.+|..|.||||+|+.+|+.+++++|++.+.   .++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~---d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA---DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC---CCCCCcCCCCCHHHhC
Confidence            3445545556667777777777777777777777775543   3444567777777765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.25  E-value=3.3e-11  Score=91.35  Aligned_cols=74  Identities=20%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.+++.. +.+.      |.||||+|+.+|+.++++.|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.+
T Consensus        10 ~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   82 (89)
T PF12796_consen   10 LEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEIVKLLLEHG   82 (89)
T ss_dssp             HHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46777777754 3322      889999999999999999999988765 558899999999999999999999999997


Q ss_pred             Cc
Q 047454          100 FK  101 (339)
Q Consensus       100 ~~  101 (339)
                      .+
T Consensus        83 ~~   84 (89)
T PF12796_consen   83 AD   84 (89)
T ss_dssp             T-
T ss_pred             CC
Confidence            53

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02795 ankyrin-like protein; Provisional

Probab=99.24  E-value=2.5e-11  Score=116.95  Aligned_cols=100  Identities=8%  Similarity=-0.041  Sum_probs=79.5

Q ss_pred             HHHHHHHHhcc-CCCCc-cc---cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHH
Q 047454           21 VEIVRIICKGV-IWNDP-QN---QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLI   95 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~-~~---d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~L   95 (339)
                      .++++.|++.+ +.+.. ..   +..|.||+|.|+..|+.++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|
T Consensus       162 ~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        162 SSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             HHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            35666666665 21111 01   234778899999999999999999888764 66899999999999999999999999


Q ss_pred             HcccCccccccccccCCCchHHHhhhcCC
Q 047454           96 YSSTFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        96 l~~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      ++.|+   .++.+|.+|.||||+|+..|+
T Consensus       241 L~~GA---dIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        241 LENGA---NVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHCCC---CCCCcCCCCCCHHHHHHHcCC
Confidence            99986   466679999999999999986

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.24  E-value=3e-11  Score=115.70  Aligned_cols=126  Identities=20%  Similarity=0.149  Sum_probs=94.9

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCC---------------------------------
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGS---------------------------------   68 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~---------------------------------   68 (339)
                      ++|+++++.. .+++..|.+||||||.|+..||..+++++++.+.+.                                 
T Consensus        87 e~v~~l~e~g-a~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~  165 (527)
T KOG0505|consen   87 EMVKFLVENG-ANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID  165 (527)
T ss_pred             HHHHHHHHhc-CCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc
Confidence            6778888875 334444999999999999999999999999864321                                 


Q ss_pred             -------------------------cccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcC
Q 047454           69 -------------------------VYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLV  123 (339)
Q Consensus        69 -------------------------~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~  123 (339)
                                               ....+.+|.|.||+|+.+|..++.++|++.+.   .++.+|.+|+||||.|+..|
T Consensus       166 iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~---~~~~~D~dgWtPlHAAA~Wg  242 (527)
T KOG0505|consen  166 IEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGY---SVNIKDYDGWTPLHAAAHWG  242 (527)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhcc---CcccccccCCCcccHHHHhh
Confidence                                     22345568899999999999999999999875   46777999999999999988


Q ss_pred             CCCCcchhhhhhhHhhhHHHHHHhhc--chhHHHhhc-CCCCcchhchH
Q 047454          124 PSSEVAGAALQMQRKLEWFKAVENLV--HPFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       124 ~~~~v~~~~l~~~~~l~~~~~v~~~~--~~~~~~~~n-~g~tp~dl~~~  169 (339)
                      ..+                  +.+++  +....++.+ .|+||.|++.+
T Consensus       243 ~~~------------------~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  243 QED------------------ACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             hHh------------------HHHHHHHhhcccchhhhcCCCCccchhh
Confidence            831                  11111  122345666 99999999876

>PHA02795 ankyrin-like protein; Provisional

Probab=99.24  E-value=2.9e-11  Score=116.61  Aligned_cols=129  Identities=15%  Similarity=-0.042  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccc-----cCCCchHhhHHHHcCChHHH
Q 047454           19 QAVEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWE-----DENKHTIFHVAVLHRRAEVF   92 (339)
Q Consensus        19 ~a~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~-----d~~G~t~LH~A~~~~~~~iv   92 (339)
                      .-.++++.|++++ +.+.    .++.||+|.|+..|+.++++.|++.+.+..+..     +..|.|++|.|+.+++.+++
T Consensus       129 n~~eiV~~LI~~GADIn~----~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIv  204 (437)
T PHA02795        129 VEIDIVDFMVDHGAVIYK----IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIY  204 (437)
T ss_pred             CCHHHHHHHHHCCCCCCC----CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHH
Confidence            3458999999986 5543    345899999999999999999999985433322     23478999999999999999


Q ss_pred             HHHHcccCccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454           93 NLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus        93 ~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      ++|++.|+   .++.+|.+|+||||+|+..|+.+                 .++.++. ....+..+ .|.||+..+.+.
T Consensus       205 e~LIs~GA---DIN~kD~~G~TpLh~Aa~~g~~e-----------------iVelLL~~GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        205 KLCIPYIE---DINQLDAGGRTLLYRAIYAGYID-----------------LVSWLLENGANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             HHHHhCcC---CcCcCCCCCCCHHHHHHHcCCHH-----------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            99999986   36667999999999999999841                 2222221 12345566 999999987654


Q ss_pred             H
Q 047454          171 H  171 (339)
Q Consensus       171 ~  171 (339)
                      .
T Consensus       265 g  265 (437)
T PHA02795        265 G  265 (437)
T ss_pred             C
Confidence            3

>PHA02946 ankyin-like protein; Provisional

Probab=99.23  E-value=3e-11  Score=118.64  Aligned_cols=81  Identities=10%  Similarity=0.110  Sum_probs=47.8

Q ss_pred             cccCCcHHHHHHHCCc--HHHHHHHHHHCCCCcccccCCCchHhhHHHHcC--ChHHHHHHHcccCccccccccccCCCc
Q 047454           39 QQLLKKAFFKAATLGI--SKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHR--RAEVFNLIYSSTFKSNWLGSNDNIRNN  114 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~--~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~--~~~iv~~Ll~~~~~~~~~~~~D~~GnT  114 (339)
                      |..|+||||+|+..++  .++++.|++.+.+. +.+|.+|+||||+|+.++  +.+++++|++ ++   .++.+|.+|+|
T Consensus       170 d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga---din~~d~~G~T  244 (446)
T PHA02946        170 DKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST---DVNKQNKFGDS  244 (446)
T ss_pred             CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC---CCCCCCCCCCC
Confidence            5566666666554333  45666666655443 345666666666666654  5566666664 32   24445666667


Q ss_pred             hHHHhhhcCC
Q 047454          115 ILHFGGKLVP  124 (339)
Q Consensus       115 pLHlA~~~~~  124 (339)
                      |||+|+..++
T Consensus       245 pLh~A~~~~~  254 (446)
T PHA02946        245 PLTLLIKTLS  254 (446)
T ss_pred             HHHHHHHhCC
Confidence            7766666655

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.22  E-value=1.9e-09  Score=108.14  Aligned_cols=81  Identities=16%  Similarity=0.076  Sum_probs=68.7

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCc--------ccccC--------------CCchHhhHHHHcCChHHHHHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSV--------YWEDE--------------NKHTIFHVAVLHRRAEVFNLIY   96 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~--------~~~d~--------------~G~t~LH~A~~~~~~~iv~~Ll   96 (339)
                      ...|.||||+|..+.+.+.|+.|++.++|.-        ...|.              -|+.||-+||+.++.+++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            5679999999999999999999999876541        11111              3788999999999999999999


Q ss_pred             cccCccccccccccCCCchHHHhhhc
Q 047454           97 SSTFKSNWLGSNDNIRNNILHFGGKL  122 (339)
Q Consensus        97 ~~~~~~~~~~~~D~~GnTpLHlA~~~  122 (339)
                      +.++   +++.+|..|||.||..+..
T Consensus       261 ~~gA---d~~aqDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  261 AHGA---DPNAQDSNGNTVLHMLVIH  283 (782)
T ss_pred             hcCC---CCCccccCCChHHHHHHHH
Confidence            9876   4788899999999998876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.21  E-value=5e-11  Score=122.23  Aligned_cols=96  Identities=7%  Similarity=-0.107  Sum_probs=81.4

Q ss_pred             HHHHHHHhccCCCCccc-cccCCcHHHHHHH--CCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC--hHHHHHHH
Q 047454           22 EIVRIICKGVIWNDPQN-QQLLKKAFFKAAT--LGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR--AEVFNLIY   96 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~-d~~g~tpLh~Aa~--~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~--~~iv~~Ll   96 (339)
                      ++++.|++.+..|.+.. |.+|.||||.|+.  .|+.++++.|++.+++. +.+|.+|+||||+|+.+|+  .+++++|+
T Consensus       156 eiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLL  234 (764)
T PHA02716        156 DLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKII  234 (764)
T ss_pred             HHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            78999998854677766 8889999999865  46789999999988764 5689999999999999995  48999999


Q ss_pred             cccCccccccccccCCCchHHHhhh
Q 047454           97 SSTFKSNWLGSNDNIRNNILHFGGK  121 (339)
Q Consensus        97 ~~~~~~~~~~~~D~~GnTpLHlA~~  121 (339)
                      +.|++   ++.+|.+|+||||.|+.
T Consensus       235 e~GAD---VN~kD~~G~TPLh~Ai~  256 (764)
T PHA02716        235 ELGGD---MDMKCVNGMSPIMTYII  256 (764)
T ss_pred             HcCCC---CCCCCCCCCCHHHHHHH
Confidence            99873   66679999999998864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.18  E-value=7.2e-11  Score=120.85  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=80.2

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHH--HHCCcHHHHHHHHHHCCCCcc--cccCCC-----------chHhhHHH
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKA--ATLGISKFVQEIIAAYKGSVY--WEDENK-----------HTIFHVAV   84 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~A--a~~G~~~iv~~Ll~~~p~~~~--~~d~~G-----------~t~LH~A~   84 (339)
                      .++++.|++.+ +.+..  |.+|+||||.|  +.+|+.++++.|++.+.+...  ..|..|           +||||+|+
T Consensus       116 ~e~vk~Ll~~Gadin~~--d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~  193 (661)
T PHA02917        116 VDLIKVLVEHGFDLSVK--CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYI  193 (661)
T ss_pred             HHHHHHHHHcCCCCCcc--CCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHH
Confidence            47889998885 55544  89999999964  468999999999999876532  112233           69999998


Q ss_pred             H-----------cCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           85 L-----------HRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        85 ~-----------~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .           +++.+++++|++.|+   .++.+|.+|+||||+|+..|+.
T Consensus       194 ~~~~~~~~~~~~~~~~eiv~~Li~~Ga---dvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        194 ISHLYSESDTRAYVRPEVVKCLINHGI---KPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             hhcccccccccccCcHHHHHHHHHCCC---CcccCCCCCCcHHHHHHHcCCC
Confidence            6           468899999999986   3666799999999999999985

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.16  E-value=1.4e-10  Score=99.81  Aligned_cols=119  Identities=10%  Similarity=-0.007  Sum_probs=91.7

Q ss_pred             CccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCc
Q 047454           35 DPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNN  114 (339)
Q Consensus        35 ~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnT  114 (339)
                      .+..|+.|.|||.||+..|+.++|+.|++.+++. ....+...++|.+|+..|..++|++|+.++.   .+|..|.+|-|
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~v---dVNvyDwNGgT  228 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREV---DVNVYDWNGGT  228 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCC---CcceeccCCCc
Confidence            3444999999999999999999999999988764 3356778999999999999999999999874   35555999999


Q ss_pred             hHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcch-hHHHhhc-CCCCcchhchHHHHHH
Q 047454          115 ILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHP-FLREAVN-NEQTPREVFTEEHKEL  174 (339)
Q Consensus       115 pLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~~-~~~~~~n-~g~tp~dl~~~~~~~l  174 (339)
                      ||-+|++-++.+                 -+|.++.. .+..... .|.++.|++.....+.
T Consensus       229 pLlyAvrgnhvk-----------------cve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~  273 (296)
T KOG0502|consen  229 PLLYAVRGNHVK-----------------CVESLLNSGADVTQEDDSGYWIMDLAVALGYRI  273 (296)
T ss_pred             eeeeeecCChHH-----------------HHHHHHhcCCCcccccccCCcHHHHHHHhhhHH
Confidence            999999998842                 33333322 2334445 7888888876544333

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.15  E-value=3.7e-11  Score=83.26  Aligned_cols=50  Identities=18%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             CCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHH
Q 047454           33 WNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVA   83 (339)
Q Consensus        33 ~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A   83 (339)
                      .+.+..|.+|.||||+||+.|+.+++++|++.+ ...+.+|.+|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            455555999999999999999999999999554 44577999999999997

>PHA02730 ankyrin-like protein; Provisional

Probab=99.15  E-value=2.4e-10  Score=115.42  Aligned_cols=100  Identities=10%  Similarity=0.057  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCc----HHHHHHHHHHCCC-CcccccCCCchHhhH---HHHcC---
Q 047454           20 AVEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGI----SKFVQEIIAAYKG-SVYWEDENKHTIFHV---AVLHR---   87 (339)
Q Consensus        20 a~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~----~~iv~~Ll~~~p~-~~~~~d~~G~t~LH~---A~~~~---   87 (339)
                      ..++++.|++.+ +.+.   +.+|.||||+|+..++    .++++.|++.+.+ .++.+|.+|+||||.   |...+   
T Consensus       358 ~ieIvelLIs~GAdIN~---k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        358 SIPILRCMLDNGATMDK---TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             cHHHHHHHHHCCCCCCc---CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence            358899999987 6654   3689999999999885    8999999998764 356688999999994   33332   


Q ss_pred             ------ChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           88 ------RAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        88 ------~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                            ..+++++|++.|+   .++.+|..|+||||+|+..++.
T Consensus       435 ~~~e~~~~~ivk~LIs~GA---DINakD~~G~TPLh~Aa~~~~~  475 (672)
T PHA02730        435 HCYETILIDVFDILSKYMD---DIDMIDNENKTLLYYAVDVNNI  475 (672)
T ss_pred             cccchhHHHHHHHHHhccc---chhccCCCCCCHHHHHHHhCCH
Confidence                  2357999999986   3777799999999999998873

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.09  E-value=2.8e-10  Score=104.41  Aligned_cols=101  Identities=17%  Similarity=0.097  Sum_probs=82.8

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      +++|+.|.+.++++.+. ...|.|+|++|+.+|+.++++.||..+++. +.+|.+|-|+|+.|+++||.+++++|+..+.
T Consensus       320 ~~vV~~LF~mgnVNaKA-sQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~  397 (452)
T KOG0514|consen  320 RTVVERLFKMGDVNAKA-SQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPS  397 (452)
T ss_pred             HHHHHHHHhccCcchhh-hhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCc
Confidence            46677776665444332 467999999999999999999999877764 6699999999999999999999999998753


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .  .....|.||.|+|.+|-..||.
T Consensus       398 c--d~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  398 C--DISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             c--cceeecCCCchhhhhHHhcCch
Confidence            1  2223399999999999999995

>PHA02730 ankyrin-like protein; Provisional

Probab=99.09  E-value=3.7e-10  Score=114.02  Aligned_cols=99  Identities=11%  Similarity=0.001  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhcc-CCCCccccccCCcHHHHHHHCC---cHHHHHHHHHHCCCCcccccCCCchHhhHHHHcC--ChHHHH
Q 047454           20 AVEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLG---ISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHR--RAEVFN   93 (339)
Q Consensus        20 a~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G---~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~--~~~iv~   93 (339)
                      +...++..++.- +.+ +..|.+|+||||+|+.+|   +.++++.|++.+++. +.+|.+|+||||+|+..+  +.++++
T Consensus        19 ~~~~~~~~~~~~~~in-~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~   96 (672)
T PHA02730         19 TYKKIKLEIETCHNLS-KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVH   96 (672)
T ss_pred             hHHHHHHHHHHhcchh-hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHH
Confidence            334555555553 443 344889999999999997   599999999998875 468999999999999977  799999


Q ss_pred             HHHcccCccccccccccCCCchHHHhhh
Q 047454           94 LIYSSTFKSNWLGSNDNIRNNILHFGGK  121 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~~D~~GnTpLHlA~~  121 (339)
                      +|++.+++. .....|+.|++|||.+..
T Consensus        97 ~Ll~~~~~~-~~~~~~~~~d~~l~~y~~  123 (672)
T PHA02730         97 LLISSYSNA-SNELTSNINDFDLYSYMS  123 (672)
T ss_pred             HHHhcCCCC-CcccccccCCchHHHHHH
Confidence            999997532 233358889999999988

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.08  E-value=5.1e-10  Score=97.89  Aligned_cols=99  Identities=17%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             HHHHHHhccCCCCccccccCCcHHHHHHHCCc-----HHHHHHHHHHCC--CCcccccCCCchHhhHHHHcCChHHHHHH
Q 047454           23 IVRIICKGVIWNDPQNQQLLKKAFFKAATLGI-----SKFVQEIIAAYK--GSVYWEDENKHTIFHVAVLHRRAEVFNLI   95 (339)
Q Consensus        23 iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~-----~~iv~~Ll~~~p--~~~~~~d~~G~t~LH~A~~~~~~~iv~~L   95 (339)
                      .++.+... +.+.+..|.+|.||||+|+..|+     .++++.|++.+.  +.....|.+|+||||+|+..|+.++++++
T Consensus        88 ~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~l  166 (235)
T COG0666          88 IVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL  166 (235)
T ss_pred             HHHHHHHc-CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHH
Confidence            33444444 34444458888888888888888     888888888887  56676788888888888888888888888


Q ss_pred             HcccCccccccccccCCCchHHHhhhcCCC
Q 047454           96 YSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        96 l~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ++.++   ....+|..|.|++|.|...++.
T Consensus       167 l~~~~---~~~~~~~~g~t~l~~a~~~~~~  193 (235)
T COG0666         167 LEAGA---DPNSRNSYGVTALDPAAKNGRI  193 (235)
T ss_pred             HhcCC---CCcccccCCCcchhhhcccchH
Confidence            88865   3444578888888888888874

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.04  E-value=9.7e-10  Score=87.05  Aligned_cols=82  Identities=17%  Similarity=0.164  Sum_probs=70.3

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      |.+|.||||.|++.|+.++++.|++.+++. ...|..|.||||.|+..+..++++++++.+.   ..+..|..|.||+|.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~l~~   79 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA---DVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CccccCCCCCCHHHH
Confidence            567999999999999999999999888765 5578899999999999999999999999874   233447889999999


Q ss_pred             hhhcCC
Q 047454          119 GGKLVP  124 (339)
Q Consensus       119 A~~~~~  124 (339)
                      |+..++
T Consensus        80 a~~~~~   85 (126)
T cd00204          80 AARNGN   85 (126)
T ss_pred             HHHcCc
Confidence            999887

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.04  E-value=4.6e-10  Score=100.17  Aligned_cols=93  Identities=15%  Similarity=0.063  Sum_probs=77.3

Q ss_pred             HHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           22 EIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        22 ~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .+++-|++++ ..+..  +....||||+||..||.++|+.|+++..|. +.++..|.||||+||-.|+..+.+-|+..|+
T Consensus        48 aivemll~rgarvn~t--nmgddtplhlaaahghrdivqkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga  124 (448)
T KOG0195|consen   48 AIVEMLLSRGARVNST--NMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGA  124 (448)
T ss_pred             HHHHHHHhcccccccc--cCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccc
Confidence            4677777776 55544  444569999999999999999999998774 6699999999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhh
Q 047454          101 KSNWLGSNDNIRNNILHFGG  120 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~  120 (339)
                         .++.-+++|.|||.-|-
T Consensus       125 ---~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  125 ---AVNICNKKGMTPLDKAK  141 (448)
T ss_pred             ---eeeecccCCCCchhhhc
Confidence               34444899999998764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.04  E-value=8.9e-10  Score=112.90  Aligned_cols=98  Identities=11%  Similarity=-0.005  Sum_probs=75.4

Q ss_pred             HHHHHHhccCCCCccccccCCcHHHHHHHCC-----------------------cHHHHHHHHHHCCCCcccccCCCchH
Q 047454           23 IVRIICKGVIWNDPQNQQLLKKAFFKAATLG-----------------------ISKFVQEIIAAYKGSVYWEDENKHTI   79 (339)
Q Consensus        23 iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G-----------------------~~~iv~~Ll~~~p~~~~~~d~~G~t~   79 (339)
                      +++.|+.+.+.+....+.+|+||||.|++.+                       +.++++.|++.+++. +.+|..|+||
T Consensus       377 ~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdI-N~kd~~G~Tp  455 (661)
T PHA02917        377 TMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDI-NMIDKRGETL  455 (661)
T ss_pred             HHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCC-CCCCCCCcCH
Confidence            4555554322222223567999999987543                       356779999988875 5689999999


Q ss_pred             hhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhh-cCC
Q 047454           80 FHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGK-LVP  124 (339)
Q Consensus        80 LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~-~~~  124 (339)
                      ||+|+..++.+++++|++.|+   .++.+|..|+||||+|+. .++
T Consensus       456 Lh~Aa~~~~~~~v~~Ll~~GA---din~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        456 LHKAVRYNKQSLVSLLLESGS---DVNIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             HHHHHHcCCHHHHHHHHHCcC---CCCCCCCCCCCHHHHHHHhCCC
Confidence            999999999999999999986   366679999999999996 444

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.02  E-value=4.7e-10  Score=117.86  Aligned_cols=92  Identities=15%  Similarity=0.082  Sum_probs=73.0

Q ss_pred             CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCC--------------------------------CCcccccCCCchH
Q 047454           32 IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYK--------------------------------GSVYWEDENKHTI   79 (339)
Q Consensus        32 ~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p--------------------------------~~~~~~d~~G~t~   79 (339)
                      +.+.+....+|.||||+|++.||.++++.+++..+                                ..+..++.+|.||
T Consensus       464 g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~Tp  543 (1143)
T KOG4177|consen  464 GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTP  543 (1143)
T ss_pred             CCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccch
Confidence            44445446777777777777777777777776431                                1145577888999


Q ss_pred             hhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCCC
Q 047454           80 FHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSS  126 (339)
Q Consensus        80 LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~~  126 (339)
                      ||.|+.+|+.++|++|+++++   .++++|+.|.||||.|+..|+.+
T Consensus       544 Lh~A~~~g~v~~VkfLLe~gA---dv~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  544 LHVAVHYGNVDLVKFLLEHGA---DVNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             HHHHHhcCCchHHHHhhhCCc---cccccCCCCCChhhHHHHcChHH
Confidence            999999999999999999987   47788999999999999999853

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.00  E-value=4.8e-10  Score=96.52  Aligned_cols=106  Identities=13%  Similarity=0.046  Sum_probs=87.8

Q ss_pred             HHhhhhhHHHHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChH
Q 047454           11 HKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAE   90 (339)
Q Consensus        11 ~~~~~~~~~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~   90 (339)
                      .+..++|++   .|+.|++. +.|++...+...++|.+|++.|+.++|+.|+.+.++. +..|-+|-|||-+|++.++.+
T Consensus       166 WAaa~G~i~---vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvk  240 (296)
T KOG0502|consen  166 WAAAKGHIP---VVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVK  240 (296)
T ss_pred             HHHhcCchH---HHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHH
Confidence            344455544   45566666 4445545667789999999999999999999999986 558999999999999999999


Q ss_pred             HHHHHHcccCccccccccccCCCchHHHhhhcCC
Q 047454           91 VFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        91 iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      +++.|+..|++   ++..|..|++++.+|+..|+
T Consensus       241 cve~Ll~sGAd---~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  241 CVESLLNSGAD---VTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             HHHHHHhcCCC---cccccccCCcHHHHHHHhhh
Confidence            99999999973   55559999999999999998

>PHA02792 ankyrin-like protein; Provisional

Probab=98.98  E-value=7.8e-10  Score=110.68  Aligned_cols=100  Identities=10%  Similarity=0.038  Sum_probs=82.9

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHH-CCcHHHHHHHHHHCCCC-------------------------------
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAAT-LGISKFVQEIIAAYKGS-------------------------------   68 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~-~G~~~iv~~Ll~~~p~~-------------------------------   68 (339)
                      .++++.|++++ .|.+..+.+|.||+|+|+. +|+.|+++.|++.+.+.                               
T Consensus        85 lElvk~LI~~G-AdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  163 (631)
T PHA02792         85 IELLKLLISKG-LEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYD  163 (631)
T ss_pred             HHHHHHHHHcC-CCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccc
Confidence            48899999985 4444557779999999965 79999999999988651                               


Q ss_pred             ----cccccCCCchHhhHHHHcC-------ChHHHHHHHcccCccccccccccCCCchHHHhhhcCC
Q 047454           69 ----VYWEDENKHTIFHVAVLHR-------RAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        69 ----~~~~d~~G~t~LH~A~~~~-------~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                          .+..|..|+||||+|+.++       +.+++++|+++|+   .++.+|..|.||||.|+...+
T Consensus       164 ~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~---~~~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        164 YDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEK---EMRYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             cccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCC---CcCccCCCCChHHHHHHHccc
Confidence                2234667999999999999       8999999999986   366679999999999999984

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.97  E-value=5.7e-09  Score=82.56  Aligned_cols=98  Identities=17%  Similarity=0.167  Sum_probs=82.0

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.+++.. ..  ...+..|.||+|.|+..++.++++.|++.++. .+..|..|.||+|+|+..++.+++++|++.+
T Consensus        20 ~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~   96 (126)
T cd00204          20 LEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHG   96 (126)
T ss_pred             HHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            37788888775 33  33488999999999999999999999998764 3557789999999999999999999999986


Q ss_pred             CccccccccccCCCchHHHhhhcCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      .   .....|..|.||+|.|...++
T Consensus        97 ~---~~~~~~~~~~~~l~~~~~~~~  118 (126)
T cd00204          97 A---DVNARDKDGRTPLHLAAKNGH  118 (126)
T ss_pred             C---CCcccCCCCCCHHHHHHhcCC
Confidence            3   244458999999999999865

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.96  E-value=3.7e-10  Score=112.05  Aligned_cols=110  Identities=13%  Similarity=0.020  Sum_probs=88.2

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      |.+|.|+||.|+-+|+.++++.|++..+- .+..|.+|.+|||+|+++|+.+++++++..+.   .+|....+|.||||+
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d---~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTD---ILNAVNIENETPLHL  121 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhccCcceEEehhhcCcchHHHHHHhccc---CCCcccccCcCccch
Confidence            88999999999999999999999988654 45678999999999999999999999998862   577778899999999


Q ss_pred             hhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchH
Q 047454          119 GGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       119 A~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~  169 (339)
                      |++.||.+.+                 ..++. ....-++| .++|++|++.+
T Consensus       122 aaqhgh~dvv-----------------~~Ll~~~adp~i~nns~~t~ldlA~q  157 (854)
T KOG0507|consen  122 AAQHGHLEVV-----------------FYLLKKNADPFIRNNSKETVLDLASR  157 (854)
T ss_pred             hhhhcchHHH-----------------HHHHhcCCCccccCcccccHHHHHHH
Confidence            9999996322                 11111 11133566 88888888655

>PHA02792 ankyrin-like protein; Provisional

Probab=98.95  E-value=2.3e-09  Score=107.38  Aligned_cols=96  Identities=7%  Similarity=0.016  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhcc-CCCCcccccc--CCcHHHHHHHCCcHH---HHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHH
Q 047454           20 AVEIVRIICKGV-IWNDPQNQQL--LKKAFFKAATLGISK---FVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFN   93 (339)
Q Consensus        20 a~~iv~~L~~~~-~~~~~~~d~~--g~tpLh~Aa~~G~~~---iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~   93 (339)
                      ..++++.|++.+ +.+..  |.+  +.||||.|+..+..+   +++.+++.+++. +.+|..|+||||+|+..++.++++
T Consensus       351 n~eIVelLIs~GADIN~k--D~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~~~n~eive  427 (631)
T PHA02792        351 DPKVVEYILKNGNVVVED--DDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKHGRSILYYCIESHSVSLVE  427 (631)
T ss_pred             CHHHHHHHHHcCCchhhh--cCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc-ccccccCcchHHHHHHcCCHHHHH
Confidence            358888888886 54443  544  569999988776654   577788887764 568999999999999999999999


Q ss_pred             HHHcccCccccccccccCCCchHHHhhh
Q 047454           94 LIYSSTFKSNWLGSNDNIRNNILHFGGK  121 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~~D~~GnTpLHlA~~  121 (339)
                      +|++.|+   .++.+|..|+||||+|+.
T Consensus       428 lLLs~GA---DIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        428 WLIDNGA---DINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHCCC---CCCCcCCCCCCHHHHHHH
Confidence            9999986   366669999999999986

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.94  E-value=2.1e-09  Score=80.40  Aligned_cols=80  Identities=13%  Similarity=0.027  Sum_probs=65.1

Q ss_pred             CCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCC
Q 047454           33 WNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIR  112 (339)
Q Consensus        33 ~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~G  112 (339)
                      .|.++. ..|++|||+||..|..+++++|+..+++. ...|+.|-|||.-|+..||.++|++|+++|+++   ..+..+|
T Consensus        26 ~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~cVklLL~~GAdr---t~~~PdG  100 (117)
T KOG4214|consen   26 LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRDCVKLLLQNGADR---TIHAPDG  100 (117)
T ss_pred             ccHHHH-hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHHHHHHHHHcCccc---ceeCCCc
Confidence            444433 47899999999999999999999998875 558999999999999999999999999999743   2235667


Q ss_pred             CchHH
Q 047454          113 NNILH  117 (339)
Q Consensus       113 nTpLH  117 (339)
                      .+.+.
T Consensus       101 ~~~~e  105 (117)
T KOG4214|consen  101 TALIE  105 (117)
T ss_pred             hhHHh
Confidence            66554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.93  E-value=1.2e-07  Score=99.16  Aligned_cols=105  Identities=17%  Similarity=0.097  Sum_probs=78.3

Q ss_pred             HHHHHHHHhcc-CCCCcc------------ccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcC
Q 047454           21 VEIVRIICKGV-IWNDPQ------------NQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHR   87 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~------------~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~   87 (339)
                      .++++.|++++ +.+...            ....|.||||.|+..|+.++++.|++.+++ ++..|+.|+||||+|+.++
T Consensus       141 ~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       141 YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhh
Confidence            57888889887 554321            124689999999999999999999987654 5668999999999999987


Q ss_pred             ---------ChHHHHHHHcccCcc---ccc-cccccCCCchHHHhhhcCCCC
Q 047454           88 ---------RAEVFNLIYSSTFKS---NWL-GSNDNIRNNILHFGGKLVPSS  126 (339)
Q Consensus        88 ---------~~~iv~~Ll~~~~~~---~~~-~~~D~~GnTpLHlA~~~~~~~  126 (339)
                               ..++.+++++.++..   ..+ +..|.+|+||||+|+..|+.+
T Consensus       220 ~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~  271 (743)
T TIGR00870       220 EFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIV  271 (743)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCcc
Confidence                     234556666554321   112 333899999999999999853

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.92  E-value=4.4e-09  Score=108.21  Aligned_cols=77  Identities=12%  Similarity=0.039  Sum_probs=59.8

Q ss_pred             HHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCC
Q 047454           45 AFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        45 pLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      +||.|+..|+.+.++.|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad---vn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD---PTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCc
Confidence            477888888888888888776654 45778888888888888888888888888753   45558888888888888776


Q ss_pred             C
Q 047454          125 S  125 (339)
Q Consensus       125 ~  125 (339)
                      .
T Consensus       161 ~  161 (664)
T PTZ00322        161 R  161 (664)
T ss_pred             H
Confidence            4

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.91  E-value=1.6e-09  Score=74.40  Aligned_cols=47  Identities=19%  Similarity=0.166  Sum_probs=37.0

Q ss_pred             CchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           76 KHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        76 G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      |+||||+|+..|+.+++++|++.+.   .++.+|.+|+||||.|+..|+.
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~---din~~d~~g~t~lh~A~~~g~~   47 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA---DINAQDEDGRTPLHYAAKNGNI   47 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS---GTT-B-TTS--HHHHHHHTT-H
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHccCH
Confidence            7899999999999999999999875   3666699999999999999984

...

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=98.89  E-value=3.2e-09  Score=88.33  Aligned_cols=78  Identities=19%  Similarity=0.095  Sum_probs=71.5

Q ss_pred             HHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCC
Q 047454           45 AFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        45 pLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      -+-+|+..+....|+.||+..|+.++.+|.+|-||||-|+.+|+.++++.|+..+++   ..++.++|.||||-|++..+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn---~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN---KEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC---cccccccCccchhhhhcccc
Confidence            356899999999999999999999999999999999999999999999999998863   55668999999999999988


Q ss_pred             C
Q 047454          125 S  125 (339)
Q Consensus       125 ~  125 (339)
                      .
T Consensus       143 ~  143 (228)
T KOG0512|consen  143 F  143 (228)
T ss_pred             h
Confidence            5

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.87  E-value=1.1e-08  Score=105.21  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=76.1

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      +.++.|++.. .+.+..|.+|+||||+|+.+|+.++++.|++.+++. +.+|.+|+||||+|+.+++.+++++|++.+..
T Consensus        96 ~~vk~LL~~G-adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~  173 (664)
T PTZ00322         96 VGARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFREVVQLLSRHSQC  173 (664)
T ss_pred             HHHHHHHHCC-CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCc
Confidence            4567777664 444445899999999999999999999999998765 56899999999999999999999999987210


Q ss_pred             ----cccccccccCCCchHHHhhh
Q 047454          102 ----SNWLGSNDNIRNNILHFGGK  121 (339)
Q Consensus       102 ----~~~~~~~D~~GnTpLHlA~~  121 (339)
                          .......+.+|++|+-.+..
T Consensus       174 ~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        174 HFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             ccccCCCCCccccCCCCccchhhh
Confidence                11233336777777766653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.87  E-value=1.6e-09  Score=107.66  Aligned_cols=98  Identities=13%  Similarity=0.097  Sum_probs=83.7

Q ss_pred             HHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           22 EIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        22 ~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      ++.+.|++.- -++..  |.+|.+|||+||+.|+.++++.++... +..+..+..|.||||.||++|+.+++.+|++.++
T Consensus        63 ~is~llle~ea~ldl~--d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~a  139 (854)
T KOG0507|consen   63 QISKLLLDYEALLDLC--DTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNA  139 (854)
T ss_pred             HHHHHHhcchhhhhhh--hccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCC
Confidence            5666666654 44444  789999999999999999999999876 6667788899999999999999999999999987


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   .-.+|+.+.|+|.+|++.|..
T Consensus       140 d---p~i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen  140 D---PFIRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             C---ccccCcccccHHHHHHHhhhh
Confidence            4   344589999999999999985

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=4.8e-09  Score=100.32  Aligned_cols=60  Identities=17%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      +.+|-|+||-|+..||.+||+.|++.+.+. +..|++||||||+|+.+++..+++.|.+.|
T Consensus       580 NdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~ckqLVe~G  639 (752)
T KOG0515|consen  580 NDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPMCKQLVESG  639 (752)
T ss_pred             CccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHHHHHHHhcc
Confidence            445555555555555555555555554442 335555555555555555555555555554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.84  E-value=1.9e-08  Score=87.86  Aligned_cols=86  Identities=21%  Similarity=0.167  Sum_probs=75.9

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC-----hHHHHHHHcccCccccccccccCCC
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR-----AEVFNLIYSSTFKSNWLGSNDNIRN  113 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~-----~~iv~~Ll~~~~~~~~~~~~D~~Gn  113 (339)
                      +..+.+++|.++..|..++++.++..+.+. +.+|..|.||||+|+.+++     .+++++|++.+++.+....+|.+|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            666899999999999999999999998887 7799999999999999999     9999999999852123444499999


Q ss_pred             chHHHhhhcCCC
Q 047454          114 NILHFGGKLVPS  125 (339)
Q Consensus       114 TpLHlA~~~~~~  125 (339)
                      ||||+|+..|+.
T Consensus       149 tpl~~A~~~~~~  160 (235)
T COG0666         149 TPLHWAALNGDA  160 (235)
T ss_pred             chhHHHHHcCch
Confidence            999999999984

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.77  E-value=1.3e-08  Score=90.90  Aligned_cols=91  Identities=12%  Similarity=0.030  Sum_probs=80.7

Q ss_pred             CccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCc
Q 047454           35 DPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNN  114 (339)
Q Consensus        35 ~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnT  114 (339)
                      .+.+|.+|++||..|+.+|+.+.++.+++.+.|.....+..+-||||.|+..|+.++.++|++.|++...+   +.-|.|
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~v---NsvgrT  114 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLV---NSVGRT  114 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccc---cchhhh
Confidence            34559999999999999999999999999999988888999999999999999999999999999754333   578999


Q ss_pred             hHHHhhhcCCCCCc
Q 047454          115 ILHFGGKLVPSSEV  128 (339)
Q Consensus       115 pLHlA~~~~~~~~v  128 (339)
                      +-.+|+..|+.+++
T Consensus       115 AaqmAAFVG~H~CV  128 (396)
T KOG1710|consen  115 AAQMAAFVGHHECV  128 (396)
T ss_pred             HHHHHHHhcchHHH
Confidence            99999999997543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=1.7e-08  Score=96.60  Aligned_cols=76  Identities=18%  Similarity=0.132  Sum_probs=65.8

Q ss_pred             HHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           46 FFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        46 Lh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      |.-|+-.|..|+|+.++..--| ....|+.|-|+||-|++.||.+||++|++.|+   .+|..|.+|+||||+|+...+.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ga---nVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGA---NVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCC---cccCccCCCCchhhhhhhcCch
Confidence            3459999999999998876433 24578899999999999999999999999986   5777899999999999998874

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.68  E-value=4.1e-08  Score=73.52  Aligned_cols=77  Identities=12%  Similarity=-0.085  Sum_probs=65.2

Q ss_pred             cHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcC
Q 047454           44 KAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLV  123 (339)
Q Consensus        44 tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~  123 (339)
                      --+.|+.++|..+-|+..+..+-+. + .-..||+|||+|+-.|+.+++++|+..|+   .+..+|+.|-|||--|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV-n-~~~ggR~plhyAAD~GQl~ilefli~iGA---~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV-N-EIYGGRTPLHYAADYGQLSILEFLISIGA---NIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH-H-HHhCCcccchHhhhcchHHHHHHHHHhcc---ccCCccccCCcHHHHHHHHh
Confidence            3467899999999999988776333 2 23489999999999999999999999986   36666999999999999999


Q ss_pred             CC
Q 047454          124 PS  125 (339)
Q Consensus       124 ~~  125 (339)
                      |.
T Consensus        79 H~   80 (117)
T KOG4214|consen   79 HR   80 (117)
T ss_pred             hH
Confidence            95

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.54  E-value=1.9e-07  Score=89.90  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             ccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHH
Q 047454           38 NQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILH  117 (339)
Q Consensus        38 ~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLH  117 (339)
                      .+..|.|.||.|+.+|+.++.+.|++.+.+. +.+|.+||||||.|+..|+.++.++|+.++++   +......|.||+.
T Consensus       194 ~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~---~d~~t~~g~~p~d  269 (527)
T KOG0505|consen  194 RHARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVEHGAD---MDAKTKMGETPLD  269 (527)
T ss_pred             cccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHHhhcc---cchhhhcCCCCcc
Confidence            3556999999999999999999999987654 56999999999999999999999999999863   4445789999999


Q ss_pred             Hhhhc
Q 047454          118 FGGKL  122 (339)
Q Consensus       118 lA~~~  122 (339)
                      +|...
T Consensus       270 v~dee  274 (527)
T KOG0505|consen  270 VADEE  274 (527)
T ss_pred             chhhh
Confidence            98764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.44  E-value=3.3e-07  Score=92.32  Aligned_cols=103  Identities=19%  Similarity=0.168  Sum_probs=83.3

Q ss_pred             HHHHHHHHhcc-CCCCccc-------cc--------------cCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCch
Q 047454           21 VEIVRIICKGV-IWNDPQN-------QQ--------------LLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHT   78 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~-------d~--------------~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t   78 (339)
                      .++|+.|++.+ +++....       |.              -|..||.+||.-+..|+++.|++..+| .+.+|++|+|
T Consensus       197 ~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNT  275 (782)
T KOG3676|consen  197 AELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNT  275 (782)
T ss_pred             HHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCCh
Confidence            47888888876 4433211       21              367899999999999999999997666 4669999999


Q ss_pred             HhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           79 IFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        79 ~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .||.-+.+-..++.+++++.+++ ....-++++|-|||-+|++.|..
T Consensus       276 VLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  276 VLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhH
Confidence            99999999999999999999874 22333389999999999999984

>PF13606 Ank_3: Ankyrin repeat

Probab=98.35  E-value=5e-07  Score=53.98  Aligned_cols=27  Identities=15%  Similarity=0.049  Sum_probs=19.3

Q ss_pred             cCCcHHHHHHHCCcHHHHHHHHHHCCC
Q 047454           41 LLKKAFFKAATLGISKFVQEIIAAYKG   67 (339)
Q Consensus        41 ~g~tpLh~Aa~~G~~~iv~~Ll~~~p~   67 (339)
                      +|+||||+||+.|+.|++++|++.+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            467777777777777777777776554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.30  E-value=4.5e-07  Score=86.11  Aligned_cols=84  Identities=14%  Similarity=0.051  Sum_probs=71.5

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      +.++.-++.+||+.|.+..++.+.-.+.| ++.+|.+.||+||+|+..|+.+++++|++..  +.....+|.+|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~--kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNAC--KVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHH--cCCCChhhccCCCcchH
Confidence            45567889999999999999887765555 4678999999999999999999999999875  33455569999999999


Q ss_pred             hhhcCCC
Q 047454          119 GGKLVPS  125 (339)
Q Consensus       119 A~~~~~~  125 (339)
                      |...+|.
T Consensus       580 A~~F~h~  586 (622)
T KOG0506|consen  580 AKHFKHK  586 (622)
T ss_pred             hHhcCcH
Confidence            9999984

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.20  E-value=2.2e-06  Score=83.04  Aligned_cols=85  Identities=18%  Similarity=0.090  Sum_probs=74.9

Q ss_pred             ccccCCcHHHHHHHCCcHHHHHHHHHHCCC-CcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchH
Q 047454           38 NQQLLKKAFFKAATLGISKFVQEIIAAYKG-SVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNIL  116 (339)
Q Consensus        38 ~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~-~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpL  116 (339)
                      .+.+..+.||+|++.|+-|+|+++++++|. .....|..|+|+||-|+..++..+.++|.+.|+   .+...|..|.||-
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdaga---sl~ktd~kg~tp~  971 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGA---SLRKTDSKGKTPQ  971 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcch---hheecccCCCChH
Confidence            377788999999999999999999999986 455678999999999999999999999999985   3444499999999


Q ss_pred             HHhhhcCCC
Q 047454          117 HFGGKLVPS  125 (339)
Q Consensus       117 HlA~~~~~~  125 (339)
                      .-|.+.|++
T Consensus       972 eraqqa~d~  980 (1004)
T KOG0782|consen  972 ERAQQAGDP  980 (1004)
T ss_pred             HHHHhcCCc
Confidence            999998885

>PF13606 Ank_3: Ankyrin repeat

Probab=98.16  E-value=2.2e-06  Score=51.20  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=25.0

Q ss_pred             CCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           75 NKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        75 ~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      +|+||||+|+.+|+.+++++|++.+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            589999999999999999999999853

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.15  E-value=3.2e-06  Score=51.60  Aligned_cols=27  Identities=15%  Similarity=0.048  Sum_probs=18.4

Q ss_pred             cCCcHHHHHHHCCcHHHHHHHHHHCCC
Q 047454           41 LLKKAFFKAATLGISKFVQEIIAAYKG   67 (339)
Q Consensus        41 ~g~tpLh~Aa~~G~~~iv~~Ll~~~p~   67 (339)
                      +|+||||+|++.|+.++++.|++.+.+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            466777777777777777777766554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.09  E-value=7.2e-06  Score=78.42  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=71.6

Q ss_pred             CcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhc
Q 047454           43 KKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKL  122 (339)
Q Consensus        43 ~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~  122 (339)
                      ..-||..++.|+.+..-.||..+++....-..+|.||||+|++.|+...+++|+-.|++   +...|.+|.||+.+|-..
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD---PGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC---CCCCCCCCCcHHHHHHhc
Confidence            45689999999999999999998887776678999999999999999999999999874   666799999999999999


Q ss_pred             CCC
Q 047454          123 VPS  125 (339)
Q Consensus       123 ~~~  125 (339)
                      ||.
T Consensus       211 gH~  213 (669)
T KOG0818|consen  211 GHH  213 (669)
T ss_pred             Cch
Confidence            885

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.07  E-value=2.7e-06  Score=85.70  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=72.8

Q ss_pred             cccccCCcHHHHHHHCCcHHHHHHHHHHCCCCccccc-CCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCch
Q 047454           37 QNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWED-ENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNI  115 (339)
Q Consensus        37 ~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d-~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTp  115 (339)
                      ..|.-|+|+||+|+..|..++++.|++++.+... +| ..|+||||-|...|+.+++..|++.|.   .+..+|++|..|
T Consensus        47 ikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~v-qD~ESG~taLHRaiyyG~idca~lLL~~g~---SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   47 IKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFV-QDEESGYTALHRAIYYGNIDCASLLLSKGR---SLRIKDKEGLSP  122 (1267)
T ss_pred             HHHhhccceeeeeeccchhHHHHHHHhcCceeee-ccccccchHhhHhhhhchHHHHHHHHhcCC---ceEEecccCCCH
Confidence            3389999999999999999999999999877655 55 589999999999999999999999984   466679999999


Q ss_pred             HHHhhhcC
Q 047454          116 LHFGGKLV  123 (339)
Q Consensus       116 LHlA~~~~  123 (339)
                      |.+-.+..
T Consensus       123 lq~~~r~~  130 (1267)
T KOG0783|consen  123 LQFLSRVL  130 (1267)
T ss_pred             HHHHhhcc
Confidence            99888743

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.05  E-value=5.8e-06  Score=50.42  Aligned_cols=27  Identities=15%  Similarity=0.261  Sum_probs=25.2

Q ss_pred             CCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           75 NKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        75 ~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      +|+||||+|+.+|+.+++++|++.+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            599999999999999999999999864

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.02  E-value=1.1e-05  Score=78.06  Aligned_cols=77  Identities=17%  Similarity=0.053  Sum_probs=37.9

Q ss_pred             HHHHHHCCcHHHHHHHHHH-CCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCC
Q 047454           46 FFKAATLGISKFVQEIIAA-YKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        46 Lh~Aa~~G~~~iv~~Ll~~-~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      +|+++.....+-++..+.. -...+..+|..|+||||+|+.-|+.+.++.|+..+++   +..+|++|++|||.|+..|+
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHHHcCC
Confidence            5555555544444332222 1223344455555555555555555555555555431   33335555555555555555


Q ss_pred             C
Q 047454          125 S  125 (339)
Q Consensus       125 ~  125 (339)
                      .
T Consensus       101 ~  101 (560)
T KOG0522|consen  101 E  101 (560)
T ss_pred             H
Confidence            3

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.00  E-value=6.9e-06  Score=85.14  Aligned_cols=84  Identities=11%  Similarity=0.084  Sum_probs=74.3

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCcccccccc-ccCCCchHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSN-DNIRNNILH  117 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~-D~~GnTpLH  117 (339)
                      ..+-.|+|-+||..||.|+++.|+.++.+ ++.+|++|-+||.+|+-.||..+|+.|++..+   .+..+ |+.+.|+|-
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha---~veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHA---DVEAQSDRTKDTMLS  829 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhh---hhhhhcccccCceEE
Confidence            34568999999999999999999998766 57799999999999999999999999999864   46666 999999999


Q ss_pred             HhhhcCCCC
Q 047454          118 FGGKLVPSS  126 (339)
Q Consensus       118 lA~~~~~~~  126 (339)
                      +|+.-|+.+
T Consensus       830 lacsggr~~  838 (2131)
T KOG4369|consen  830 LACSGGRTR  838 (2131)
T ss_pred             EecCCCcch
Confidence            999999863

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.00  E-value=1.6e-05  Score=77.38  Aligned_cols=61  Identities=16%  Similarity=0.036  Sum_probs=54.5

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      +.+|+|+||+||+.|++.+.+.|+-.+.|. ..+|.+|+|+|.+|-..|..+++..|+..|.
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            788899999999999999999999777765 4489999999999999999999999999875

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.97  E-value=1.7e-05  Score=76.68  Aligned_cols=64  Identities=11%  Similarity=0.090  Sum_probs=54.7

Q ss_pred             CCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcc
Q 047454           34 NDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS   98 (339)
Q Consensus        34 ~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~   98 (339)
                      ..+..|..|+||||+|+..|+.+.++.|+..+++. ..+|.+||+|||-|+..|+.+++..++.+
T Consensus        47 ~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   47 VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            34444888999999999999999999999998764 55899999999999999999877666643

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.92  E-value=2.4e-05  Score=70.34  Aligned_cols=80  Identities=10%  Similarity=0.083  Sum_probs=70.4

Q ss_pred             CCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCcccccccc-ccCCCchHHHhh
Q 047454           42 LKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSN-DNIRNNILHFGG  120 (339)
Q Consensus        42 g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~-D~~GnTpLHlA~  120 (339)
                      -..||.-+..+|.++-...|++.- .-++.+|..|.++|..|+.+|+.+.++.+++.|+|   +|.. +..+.||||.|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~v-r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD---vN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTV-RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD---VNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHh-hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC---cCcccccccccHHHHHH
Confidence            358999999999999999999763 33567999999999999999999999999999874   5555 999999999999


Q ss_pred             hcCCC
Q 047454          121 KLVPS  125 (339)
Q Consensus       121 ~~~~~  125 (339)
                      ..|+.
T Consensus        88 LSGn~   92 (396)
T KOG1710|consen   88 LSGNQ   92 (396)
T ss_pred             HcCCc
Confidence            99996

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.86  E-value=1e-05  Score=77.04  Aligned_cols=68  Identities=19%  Similarity=0.063  Sum_probs=60.8

Q ss_pred             CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           32 IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        32 ~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      +.|.+..|.+.+|+||.||..|++++++.|++.+......+|..|+|||--|...+|.+++++|-+..
T Consensus       529 g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  529 GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            45555569999999999999999999999999987777789999999999999999999999997753

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.75  E-value=2.5e-05  Score=81.04  Aligned_cols=110  Identities=14%  Similarity=-0.013  Sum_probs=84.2

Q ss_pred             HHhhhhhHHHHHHHHHHHhcc--CCCCc--cccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHc
Q 047454           11 HKEKVRNMQAVEIVRIICKGV--IWNDP--QNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLH   86 (339)
Q Consensus        11 ~~~~~~~~~a~~iv~~L~~~~--~~~~~--~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~   86 (339)
                      ..+..++....+.+..+....  +.+.+  ..-..|.|+||.|+..|..-.++.|++.+.+ ++.+|..|+||||.+...
T Consensus       621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~  699 (785)
T KOG0521|consen  621 KELLVKASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATAS  699 (785)
T ss_pred             HHHHHHhccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhh
Confidence            344444444444444444443  22221  1246689999999999999999999998877 688999999999999999


Q ss_pred             CChHHHHHHHcccCccccccccccCCCchHHHhhhcCC
Q 047454           87 RRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        87 ~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      |+...+..+++++++   .+..|.+|.+||++|....+
T Consensus       700 g~~~~~~~ll~~~a~---~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  700 GHTSIACLLLKRGAD---PNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhcccccc---ccccCccCcchhhHHhhhcc
Confidence            999999999998864   45559999999999988754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.70  E-value=5.8e-05  Score=73.43  Aligned_cols=76  Identities=14%  Similarity=0.042  Sum_probs=57.7

Q ss_pred             HHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCcccccccc-ccCCCchHHHhhhcCCC
Q 047454           47 FKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSN-DNIRNNILHFGGKLVPS  125 (339)
Q Consensus        47 h~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~-D~~GnTpLHlA~~~~~~  125 (339)
                      ..|+..+..--+++.-..+.+. ..++.+.++.||+|+..|+.++|+|+++++.  ..+..+ |..|.|.||-|+..++.
T Consensus       871 l~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhcch
Confidence            4455555544444444444444 4488899999999999999999999999984  345555 99999999999998873

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.69  E-value=0.0001  Score=62.66  Aligned_cols=87  Identities=11%  Similarity=-0.005  Sum_probs=68.2

Q ss_pred             CCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCC
Q 047454           34 NDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRN  113 (339)
Q Consensus        34 ~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~Gn  113 (339)
                      +.+..|.-||||++.||..|..+.+.+|+.++...+..+|..|.+++.+|-+.|+.++++.|.+...+.+...+ ..+++
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n-ss~~e   82 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN-SSRDE   82 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc-CCCCC
Confidence            45666999999999999999999999999998777788999999999999999999999999887421111111 34555


Q ss_pred             chHHHhhh
Q 047454          114 NILHFGGK  121 (339)
Q Consensus       114 TpLHlA~~  121 (339)
                      ++..+-..
T Consensus        83 ~lfyCE~C   90 (223)
T KOG2384|consen   83 ALFYCEVC   90 (223)
T ss_pred             ccchhhhh
Confidence            65554443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=97.64  E-value=3.5e-05  Score=80.10  Aligned_cols=101  Identities=18%  Similarity=0.100  Sum_probs=81.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.++.++ .+...+|..|.+||.+|+-.||..+|+.|++.+.+.....|..+.|+|-+||-.|+.++|++|+..++
T Consensus       770 ~e~vellv~rg-aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~ga  848 (2131)
T KOG4369|consen  770 REEVELLVVRG-ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGA  848 (2131)
T ss_pred             HHHHHHHHHhc-ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhc
Confidence            36777777774 33444499999999999999999999999999988877789999999999999999999999999875


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .+   -.++-...|||-+|..-|..
T Consensus       849 nk---ehrnvsDytPlsla~Sggy~  870 (2131)
T KOG4369|consen  849 NK---EHRNVSDYTPLSLARSGGYT  870 (2131)
T ss_pred             cc---cccchhhcCchhhhcCcchH
Confidence            32   22345667888888776654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.49  E-value=7.4e-05  Score=77.61  Aligned_cols=87  Identities=9%  Similarity=-0.070  Sum_probs=62.8

Q ss_pred             ccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccc---cccCCCc
Q 047454           38 NQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGS---NDNIRNN  114 (339)
Q Consensus        38 ~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~---~D~~GnT  114 (339)
                      +|.+|.--+|. |..|+.+..-+++..+...++.+|.+||||||+|+..|+..++..|++.++++..+..   .+..|.|
T Consensus       604 ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~t  682 (975)
T KOG0520|consen  604 LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKT  682 (975)
T ss_pred             hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCc
Confidence            36666666666 5555556666666666666778889999999999999999999888877654433222   2567888


Q ss_pred             hHHHhhhcCCC
Q 047454          115 ILHFGGKLVPS  125 (339)
Q Consensus       115 pLHlA~~~~~~  125 (339)
                      +-.+|..+|+.
T Consensus       683 a~~la~s~g~~  693 (975)
T KOG0520|consen  683 AADLARANGHK  693 (975)
T ss_pred             hhhhhhccccc
Confidence            88888888874

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.45  E-value=0.00031  Score=67.54  Aligned_cols=65  Identities=11%  Similarity=-0.122  Sum_probs=54.3

Q ss_pred             CCCCccc-cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           32 IWNDPQN-QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        32 ~~~~~~~-d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      +.+.+-. -+.|.||||.||+.|..--++.|+-+++|. ...|.+|.||+-+|-..||.++.+.|++
T Consensus       156 GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  156 GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            4555555 467999999999999999999998888775 4589999999999999999887766655

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.34  E-value=0.00062  Score=66.62  Aligned_cols=114  Identities=14%  Similarity=0.101  Sum_probs=75.5

Q ss_pred             hhhHHHHHhhhhhHHHHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCC--Cc-ccccCCCchHhh
Q 047454            5 PSIKVIHKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKG--SV-YWEDENKHTIFH   81 (339)
Q Consensus         5 ~~~~~i~~~~~~~~~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~--~~-~~~d~~G~t~LH   81 (339)
                      |+.+.-.+.|++-+-+.---+..+.-+    ...+..-..-|-.|....++..+-.||.++..  .. ...+.+|+|+||
T Consensus       591 Ps~~s~REEkErwIr~KYeqklFLaPl----~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LH  666 (749)
T KOG0705|consen  591 PSPDSSREEKERWIRAKYEQKLFLAPL----PCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALH  666 (749)
T ss_pred             CCccccHHHHHHHHHHHHHHHhhcCCC----CCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhh
Confidence            455555666666655543333333322    10011112345667777777777777765421  22 224678999999


Q ss_pred             HHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           82 VAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        82 ~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +|+..|+....++|+-.+.   .+..+|..|+|+|.+|-+.|..
T Consensus       667 La~~~gnVvl~QLLiWyg~---dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  667 LAARKGNVVLAQLLIWYGV---DVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             hhhhhcchhHHHHHHHhCc---cceecccCCchhhhhHhhcccH
Confidence            9999999999999998875   3666799999999999998874

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=96.98  E-value=0.00033  Score=71.23  Aligned_cols=72  Identities=10%  Similarity=-0.002  Sum_probs=58.3

Q ss_pred             CcHHHHH-HHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCcccccccc-ccCCCchHHHhhhcCCCCC
Q 047454           53 GISKFVQ-EIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSN-DNIRNNILHFGGKLVPSSE  127 (339)
Q Consensus        53 G~~~iv~-~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~-D~~GnTpLHlA~~~~~~~~  127 (339)
                      |...-++ .+-+.|...++..|..|||+||+|+..++..+++.|+++|.   .++-+ -..|.||||-|...|+.++
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGi---dv~vqD~ESG~taLHRaiyyG~idc  101 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGI---DVFVQDEESGYTALHRAIYYGNIDC  101 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCc---eeeeccccccchHhhHhhhhchHHH
Confidence            4443344 44466778888999999999999999999999999999985   35666 4679999999999999643

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.79  E-value=0.00081  Score=70.10  Aligned_cols=83  Identities=14%  Similarity=-0.021  Sum_probs=64.7

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHH-CCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAA-YKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILH  117 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~-~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLH  117 (339)
                      .-.|++-+|+++..|+...++.+++. +-. ....|.+|...+|+ |..++.+..-+++...  ...+.-+|..|+||||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~--~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHF-CAALGYEWAFLPISAD--GVAIDIRDRNGWTPLH  646 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhH-hhhcCCceeEEEEeec--ccccccccCCCCcccc
Confidence            56789999999999999999999986 322 23367888889999 5556666666666554  2246666999999999


Q ss_pred             HhhhcCCC
Q 047454          118 FGGKLVPS  125 (339)
Q Consensus       118 lA~~~~~~  125 (339)
                      +|+..|+.
T Consensus       647 wAa~~G~e  654 (975)
T KOG0520|consen  647 WAAFRGRE  654 (975)
T ss_pred             hHhhcCHH
Confidence            99999984

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.55  E-value=0.0045  Score=58.00  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=49.2

Q ss_pred             CcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           43 KKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        43 ~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .--|..||+.|..+.++.|++.+- .++.+|.-...||.+|+..||.+++++|+++|+
T Consensus        37 f~elceacR~GD~d~v~~LVetgv-nVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGV-NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCC-CcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            345788999999999999999654 457789999999999999999999999999986

>smart00248 ANK ankyrin repeats

Probab=96.46  E-value=0.0047  Score=34.48  Aligned_cols=27  Identities=15%  Similarity=0.026  Sum_probs=20.1

Q ss_pred             cCCcHHHHHHHCCcHHHHHHHHHHCCC
Q 047454           41 LLKKAFFKAATLGISKFVQEIIAAYKG   67 (339)
Q Consensus        41 ~g~tpLh~Aa~~G~~~iv~~Ll~~~p~   67 (339)
                      +|.||+|+|+..|+.++++.|++.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            367888888888888888888776543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.10  E-value=0.0078  Score=51.41  Aligned_cols=56  Identities=13%  Similarity=0.141  Sum_probs=48.7

Q ss_pred             CcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           68 SVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        68 ~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .++.+|.-|||+|+.|+..|+.+++++|++++.  ..+-..|..|++++.+|-+.|..
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~--a~vgv~d~ssldaaqlaek~g~~   59 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGV--AFVGVTDESSLDAAQLAEKGGAQ   59 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCc--ccccccccccchHHHHHHhcChH
Confidence            356789999999999999999999999999982  24545599999999999999984

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.26  E-value=3.1  Score=43.39  Aligned_cols=77  Identities=10%  Similarity=-0.063  Sum_probs=49.1

Q ss_pred             HHHHHhcc---CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCC-------------------------c------
Q 047454           24 VRIICKGV---IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGS-------------------------V------   69 (339)
Q Consensus        24 v~~L~~~~---~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~-------------------------~------   69 (339)
                      |+..++..   .++.+..|.-|+++||+|..+-+.|+++.|++..-+.                         .      
T Consensus        41 V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~  120 (822)
T KOG3609|consen   41 VAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERS  120 (822)
T ss_pred             HHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcccccchhccc
Confidence            45555544   3666666888888888888888888888877653110                         0      


Q ss_pred             ----ccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           70 ----YWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        70 ----~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                          ...-..+-|||.+||..++.+++++|++.|+
T Consensus       121 ~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  121 GDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             cccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence                0112335567777777777777777776654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=95.04  E-value=0.016  Score=60.55  Aligned_cols=49  Identities=16%  Similarity=0.090  Sum_probs=44.1

Q ss_pred             CCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           74 ENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        74 ~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ..|.|+||.|+..+....+++|++.++   .++..|..|+||||.+...|+.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga---~vn~~d~~g~~plh~~~~~g~~  702 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGA---DVNALDSKGRTPLHHATASGHT  702 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCC---cchhhhccCCCcchhhhhhccc
Confidence            357999999999999999999999986   3666699999999999999995

>smart00248 ANK ankyrin repeats

Probab=94.90  E-value=0.033  Score=30.74  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.4

Q ss_pred             CCchHhhHHHHcCChHHHHHHHcccC
Q 047454           75 NKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        75 ~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      +|.||+|+|+..++.++++.+++.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47899999999999999999998763

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.87  E-value=0.08  Score=51.53  Aligned_cols=45  Identities=18%  Similarity=0.134  Sum_probs=33.1

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAV   84 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~   84 (339)
                      |.--.|+||+|+..|..+++.++|+..-|. ...|..|+||..++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            444568888888888888888888776443 336788888888776

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.86  E-value=0.066  Score=55.22  Aligned_cols=57  Identities=18%  Similarity=0.234  Sum_probs=48.4

Q ss_pred             CcHHHHHHHCCcHHHHHHHHHHCCC---CcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           43 KKAFFKAATLGISKFVQEIIAAYKG---SVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        43 ~tpLh~Aa~~G~~~iv~~Ll~~~p~---~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .--.-.|+++|+...|+..++....   .++.+|.-|+++||+|+.+.+.++.++|++.+
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~   85 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTS   85 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCc
Confidence            3444679999999999999987654   45678999999999999999999999999874

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=91.34  E-value=0.42  Score=45.18  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR   88 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~   88 (339)
                      ++.|++|++. +.+.+..|+-..+||.+|+-.||.++++.|+++++-| ..-.-+|.-. |+++.+.+
T Consensus        49 ~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLnd~  113 (516)
T KOG0511|consen   49 VDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALNDR  113 (516)
T ss_pred             HHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhhHH
Confidence            4778888884 6777777888899999999999999999999987654 3233456655 67776654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=89.14  E-value=0.53  Score=46.02  Aligned_cols=63  Identities=8%  Similarity=0.061  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHCCCC-----cccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhh
Q 047454           55 SKFVQEIIAAYKGS-----VYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGG  120 (339)
Q Consensus        55 ~~iv~~Ll~~~p~~-----~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~  120 (339)
                      .+.+++|.+..-+.     .+..|..--|+||+|+..|..++|.++++.++|   .-..|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D---p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD---PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC---chhcccCCCCcccccc
Confidence            44556655543222     122344568999999999999999999999864   3345999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.78
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.74
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.73
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.72
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.71
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.7
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.69
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.69
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.69
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.69
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.68
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.68
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.67
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.67
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.67
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.67
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.66
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.65
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.65
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.65
2rfa_A	232	Transient receptor potential cation channel subfa	99.64
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.64
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.64
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.64
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.64
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.64
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.64
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.64
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.63
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.63
2rfa_A	232	Transient receptor potential cation channel subfa	99.63
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.63
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.63
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.63
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.63
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.63
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.63
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.62
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.62
2pnn_A	273	Transient receptor potential cation channel subfa	99.62
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.62
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.62
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.61
2etb_A	256	Transient receptor potential cation channel subfam	99.61
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.61
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.61
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.6
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.6
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.6
2etb_A	256	Transient receptor potential cation channel subfam	99.6
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.6
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.6
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.59
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.59
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.59
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.59
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.59
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.59
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.59
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.59
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.59
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.58
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.58
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.58
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.58
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.58
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.58
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.58
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.58
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.58
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.58
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.57
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.57
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.57
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.56
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.56
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.56
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.55
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.55
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.55
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.55
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.55
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.55
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.54
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.54
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.54
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.54
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.53
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.53
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.53
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.52
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.52
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.52
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.51
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.5
2pnn_A	273	Transient receptor potential cation channel subfa	99.5
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.5
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.5
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.49
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.49
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.48
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.48
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.48
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.45
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.44
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.43
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.43
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.38
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.32
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.31
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.3
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.15

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.78  E-value=1.1e-18  Score=148.02  Aligned_cols=128  Identities=17%  Similarity=0.131  Sum_probs=102.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++|+.|++.. .|++..|.+|+||||+|+..|+.++++.|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.++
T Consensus        17 ~~~v~~Ll~~G-advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga   94 (169)
T 4gpm_A           17 KDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGA   94 (169)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence            36677788875 444455999999999999999999999999988764 5689999999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                         .++.+|.+|+||||+|+..|+.+                 .++.++. ....+..| +|.||++++.+.
T Consensus        95 ---dvn~~d~~G~TpLh~A~~~g~~~-----------------~v~~Ll~~gad~~~~d~~G~TpL~~A~~~  146 (169)
T 4gpm_A           95 ---DVNAKDSDGRTPLHHAAENGHKE-----------------VVKLLISKGADVNTSDSDGRTPLDLAREH  146 (169)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCHH-----------------HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence               36667999999999999999842                 2222221 12245567 999999997654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.74  E-value=8.7e-18  Score=140.37  Aligned_cols=133  Identities=16%  Similarity=0.082  Sum_probs=104.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.+++....+....+.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..|+.+++++|++.+.
T Consensus        21 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   99 (165)
T 3twr_A           21 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGA   99 (165)
T ss_dssp             HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Confidence            467777777654555555888999999999999999999999987764 5689999999999999999999999999975


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHHHHHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEEHKEL  174 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~~~~l  174 (339)
                         .++.+|.+|+||||+|+..++.+                 .++.++. ....+.+| +|+||++++.+.+.+.
T Consensus       100 ---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~i  155 (165)
T 3twr_A          100 ---VVNVADLWKFTPLHEAAAKGKYE-----------------ICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDI  155 (165)
T ss_dssp             ---CTTCCCTTCCCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCTGGGSCTTCHHH
T ss_pred             ---CCCCcCCCCCCHHHHHHHcCCHH-----------------HHHHHHHcCCCCcccCCCCCChhHhHhcCChHH
Confidence               35556999999999999999842                 1222111 11234567 9999999987655543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.73  E-value=3.3e-17  Score=138.96  Aligned_cols=130  Identities=16%  Similarity=0.085  Sum_probs=103.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.+++....+.+..|.+|+||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+..|+.+++++|++.+.
T Consensus        18 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   96 (179)
T 3f6q_A           18 AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKA   96 (179)
T ss_dssp             HHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            367788888764455555899999999999999999999999987664 5589999999999999999999999999985


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEEH  171 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~~  171 (339)
                         .++.+|.+|+||||+|+..++.+                 .++.++. ....+..| +|.||.+++.+..
T Consensus        97 ---~~~~~d~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  149 (179)
T 3f6q_A           97 ---DINAVNEHGNVPLHYACFWGQDQ-----------------VAEDLVANGALVSICNKYGEMPVDKAKAPL  149 (179)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHTTCCSSBCCTTSCCGGGGSCHHH
T ss_pred             ---CCCccCCCCCCHHHHHHHcCCHH-----------------HHHHHHHCCCCcchhccCCCCcHHHHHHHH
Confidence               35566999999999999999841                 1221111 11234567 9999999986643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.72  E-value=2.1e-17  Score=139.95  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=85.7

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.+++.. .+.+..|.+|+||||+|++.|+.++++.|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.+++
T Consensus        51 ~~~~~ll~~g-ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad  128 (169)
T 4gpm_A           51 EVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD  128 (169)
T ss_dssp             HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHhcc-cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5666677664 444445899999999999999999999999998774 66899999999999999999999999999863


Q ss_pred             cccccccccCCCchHHHhhhcCCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         ++.+|.+|+||||+|+..|+.
T Consensus       129 ---~~~~d~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A          129 ---VNTSDSDGRTPLDLAREHGNE  149 (169)
T ss_dssp             ---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             ---ccccCCCCCCHHHHHHHcCCH
Confidence               566699999999999999984

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.71  E-value=2.5e-17  Score=133.53  Aligned_cols=114  Identities=18%  Similarity=0.118  Sum_probs=91.4

Q ss_pred             cccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchH
Q 047454           37 QNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNIL  116 (339)
Q Consensus        37 ~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpL  116 (339)
                      ..|.+|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..++.+++++|++.+.   .++.+|.+|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKA---LVNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---cccCcCCCCCCHH
Confidence            34889999999999999999999999987664 5689999999999999999999999999875   3555699999999


Q ss_pred             HHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHHH
Q 047454          117 HFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEEH  171 (339)
Q Consensus       117 HlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~~  171 (339)
                      |+|+..++.+                 .++.++. ....+..| +|.||.+++.+..
T Consensus        81 ~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           81 HDAAKNGHVD-----------------IVKLLLSYGASRNAVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             HHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCGGGGCCCHH
T ss_pred             HHHHHcCCHH-----------------HHHHHHHcCCCCCCCCCCCCCHHHHHhhcc
Confidence            9999998841                 1221111 12245667 9999999986543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.70  E-value=4.9e-17  Score=134.35  Aligned_cols=128  Identities=13%  Similarity=0.065  Sum_probs=100.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.+++....+.+..|.+|+||||+ +..|+.++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|++.+.
T Consensus        15 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   92 (156)
T 1bd8_A           15 VQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGA   92 (156)
T ss_dssp             HHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            3566777776433555558899999999 9999999999999987664 5689999999999999999999999999975


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcchhHHHhhc-CCCCcchhchHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n-~g~tp~dl~~~~  170 (339)
                         .++.+|.+|+||||+|+..|+.+                 .++.++.....+..+ +|.||.+++.+.
T Consensus        93 ---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~~~~~~~~~~g~t~l~~A~~~  143 (156)
T 1bd8_A           93 ---DVNVPDGTGALPIHLAVQEGHTA-----------------VVSFLAAESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             ---CSCCCCTTSCCHHHHHHHHTCHH-----------------HHHHHHTTSCTTCCCTTSCCHHHHHHHS
T ss_pred             ---CCCCcCCCCCcHHHHHHHhChHH-----------------HHHHHHhccCCCCcCCCCCCHHHHHHHc
Confidence               35566999999999999999841                 222222222344566 999999987654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.69  E-value=1.1e-16  Score=134.55  Aligned_cols=129  Identities=9%  Similarity=-0.018  Sum_probs=100.7

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.+++....+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..++.+++++|++.+.
T Consensus        15 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   93 (172)
T 3v30_A           15 LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDV   93 (172)
T ss_dssp             HHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            467778887762223444889999999999999999999999998764 5588999999999999999999999999975


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                         .++.+|.+|+||||+|+..++.+                 .++.++. ....+..+ +|.||++++...
T Consensus        94 ---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  145 (172)
T 3v30_A           94 ---DINIYDWNGGTPLLYAVRGNHVK-----------------CVEALLARGADLTTEADSGYTPMDLAVAL  145 (172)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCHH-----------------HHHHHHHcCCCccccCCCCCCHHHHHHHh
Confidence               35566999999999999998842                 1221111 11234566 899999987664

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.69  E-value=1.7e-16  Score=132.78  Aligned_cols=128  Identities=7%  Similarity=-0.041  Sum_probs=100.3

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.+++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +..|..|+||||+|+..|+.+++++|++.+.
T Consensus        16 ~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   93 (167)
T 3v31_A           16 MLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGV   93 (167)
T ss_dssp             HHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            47778888775 334444889999999999999999999999987664 5588999999999999999999999999875


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                         .++.+|.+|+||||+|+..++.+                 .++.++. ....+..+ +|.||.+++.+.
T Consensus        94 ---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  145 (167)
T 3v31_A           94 ---DVNEYDWNGGTPLLYAVHGNHVK-----------------CVKMLLESGADPTIETDSGYNSMDLAVAL  145 (167)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ---CCCcCCCCCCCHHHHHHHcCCHH-----------------HHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence               35556999999999999998842                 1221111 11234566 999999987664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.69  E-value=1.2e-16  Score=134.19  Aligned_cols=128  Identities=16%  Similarity=0.081  Sum_probs=100.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|++.|+.++++.|++.+.+. +..|..|+||||+|+..|+.+++++|++.+.
T Consensus        27 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  104 (169)
T 2y1l_E           27 DDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGA  104 (169)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            46788888875 333444889999999999999999999999987664 5588999999999999999999999999975


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                         .++.+|.+|+||||+|+..++.+                 .++.++. ....+..| +|.||.+++.+.
T Consensus       105 ---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  156 (169)
T 2y1l_E          105 ---DVNANDMEGHTPLHLAAMFGHLE-----------------IVEVLLKNGADVNAQDKFGKTAFDISIDN  156 (169)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCHH-----------------HHHHHHHcCCCCCCcCCCCCCHHHHHHHh
Confidence               35556999999999999998842                 1111111 11234566 899999987654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.69  E-value=6.5e-17  Score=122.39  Aligned_cols=81  Identities=20%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             cCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhh
Q 047454           41 LLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGG  120 (339)
Q Consensus        41 ~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~  120 (339)
                      +|+||||+|++.|+.++++.|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.++   .++.+|.+|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCccCCCCCCHHHHHH
Confidence            5899999999999999999999987764 6689999999999999999999999999986   35566999999999999


Q ss_pred             hcCCC
Q 047454          121 KLVPS  125 (339)
Q Consensus       121 ~~~~~  125 (339)
                      ..++.
T Consensus        77 ~~~~~   81 (93)
T 1n0q_A           77 RNGHL   81 (93)
T ss_dssp             HTTCH
T ss_pred             HcCCH
Confidence            99884

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.68  E-value=1e-16  Score=132.36  Aligned_cols=126  Identities=15%  Similarity=0.117  Sum_probs=98.8

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. +.+   .|.+|.||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.+
T Consensus        15 ~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   90 (153)
T 1awc_B           15 DDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHG   90 (153)
T ss_dssp             HHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHcC
Confidence            46677788776 433   3788999999999999999999999987664 558999999999999999999999999997


Q ss_pred             CccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      .   .++.+|.+|+||||+|+..++.+                 .++.++. ....+..| +|.||.+++.+.
T Consensus        91 ~---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  143 (153)
T 1awc_B           91 A---DVNAKDMLKMTALHWATEHNHQE-----------------VVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             C---CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             C---CCCCCCCCCCCHHHHHHHcCCHH-----------------HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            5   35566999999999999998841                 1221111 11234566 899999987654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.68  E-value=1.4e-16  Score=139.43  Aligned_cols=102  Identities=16%  Similarity=0.077  Sum_probs=60.1

Q ss_pred             HHHHHHHHhcc-CCCCcc-ccccCCcHHHHHHHCCcHHHHHHHHHHCC-CCcccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           21 VEIVRIICKGV-IWNDPQ-NQQLLKKAFFKAATLGISKFVQEIIAAYK-GSVYWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~-~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p-~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      .++++.|++.. +.+... .|.+|+||||+|+..|+.++++.|++.++ ...+..|.+|+||||+|+..++.+++++|++
T Consensus        49 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  128 (228)
T 2dzn_A           49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE  128 (228)
T ss_dssp             HHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence            35566666665 455544 35666666666666666666666666541 1234456666666666666666666666666


Q ss_pred             ccCccccccccccCCCchHHHhhhcCCC
Q 047454           98 STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        98 ~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .+.   .++.+|.+|+||||+|+..|+.
T Consensus       129 ~g~---~~~~~~~~g~t~L~~A~~~~~~  153 (228)
T 2dzn_A          129 NGA---SVRIKDKFNQIPLHRAASVGSL  153 (228)
T ss_dssp             TTC---CSCCCCTTSCCHHHHHHHTTCH
T ss_pred             cCC---CccccCCCCCCHHHHHHHcCCH
Confidence            653   2334466666666666666553

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.67  E-value=9e-17  Score=133.45  Aligned_cols=127  Identities=15%  Similarity=0.061  Sum_probs=98.7

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+. |+.++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|++.+.
T Consensus        18 ~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   94 (162)
T 1ihb_A           18 LEQLTSLLQNN-VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQA   94 (162)
T ss_dssp             HHHHHHHTTSC-CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCC-CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            46777788765 3344448899999999999 9999999999987664 5589999999999999999999999999875


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcchh--HHHhhc-CCCCcchhchHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPF--LREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~~~--~~~~~n-~g~tp~dl~~~~  170 (339)
                         .++.+|.+|+||||+|+..++.+                 .++.++...  ..+..+ +|.||++++.+.
T Consensus        95 ---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A           95 ---DVNIEDNEGNLPLHLAAKEGHLR-----------------VVEFLVKHTASNVGHRNHKGDTACDLARLY  147 (162)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             ---CCCCcCCCCCCHHHHHHHcCCHH-----------------HHHHHHHccCCCCCCcCCCCCcHHHHHHHc
Confidence               35566999999999999999841                 222222111  124556 899999987654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.67  E-value=1.3e-16  Score=126.86  Aligned_cols=82  Identities=15%  Similarity=0.018  Sum_probs=61.1

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      +..|.||||+|++.|+.++++.|++.+++. +.+|..|+||||+|+..++.+++++|++.+.   .++.+|.+|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGA---DINAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC---CTTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCCcCCCCCCCHHHH
Confidence            456778888888888888888888776653 5577788888888888888888888887764   245557788888888


Q ss_pred             hhhcCC
Q 047454          119 GGKLVP  124 (339)
Q Consensus       119 A~~~~~  124 (339)
                      |+..++
T Consensus        80 A~~~~~   85 (123)
T 3aaa_C           80 AVYEGH   85 (123)
T ss_dssp             HHHHTC
T ss_pred             HHHcCC
Confidence            888777

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.67  E-value=3e-16  Score=127.18  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=85.7

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..++.+++++|++.++
T Consensus        27 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~  104 (136)
T 2jab_A           27 DDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA  104 (136)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36778888875 334444889999999999999999999999987664 5588999999999999999999999999975


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..++.
T Consensus       105 ---~~~~~~~~g~tpl~~A~~~~~~  126 (136)
T 2jab_A          105 ---DVNAQDKFGKTAFDISIGNGNE  126 (136)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ---CCcCcCCCCCCHHHHHHHCCCH
Confidence               3555699999999999999884

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.67  E-value=1.6e-16  Score=136.01  Aligned_cols=127  Identities=9%  Similarity=-0.030  Sum_probs=94.0

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..++.+++++|++.+. 
T Consensus        49 ~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-  125 (192)
T 2rfm_A           49 NAIDKLVENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA-  125 (192)
T ss_dssp             GGHHHHHHHH-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhc-cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-
Confidence            5667777764 233334788999999999999999999999887664 5578889999999999999999999998875 


Q ss_pred             cccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                        .++.+|.+|+||||+|+..++.+                 .++.++. ....+..| +|.||.+++...
T Consensus       126 --~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          126 --NVNDRNLEGETPLIVASKYGRSE-----------------IVKKLLELGADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             --CSSCCCTTCCCHHHHHHHHTCHH-----------------HHHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             --CCCCCCCCCCCHHHHHHHcCCHH-----------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence              35556889999999999988731                 1222111 11234566 899999987654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.66  E-value=2.5e-16  Score=125.28  Aligned_cols=97  Identities=11%  Similarity=0.005  Sum_probs=82.3

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.+++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++ ++.+|.+|+||||+|+..++.+++++|++.++
T Consensus        20 ~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga   97 (123)
T 3aaa_C           20 LDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA   97 (123)
T ss_dssp             HHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36777788775 33444488999999999999999999999998776 45689999999999999999999999999985


Q ss_pred             ccccccccccCCCchHHHhhhc
Q 047454          101 KSNWLGSNDNIRNNILHFGGKL  122 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~  122 (339)
                      +   ++.+|.+|+||||+|...
T Consensus        98 ~---~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           98 D---KTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             C---TTCCCTTSCCHHHHCCCH
T ss_pred             C---CCCcCCCCCCHHHHhCCH
Confidence            3   556699999999999544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.65  E-value=3.1e-16  Score=141.43  Aligned_cols=118  Identities=13%  Similarity=-0.071  Sum_probs=81.2

Q ss_pred             CccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCc
Q 047454           35 DPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNN  114 (339)
Q Consensus        35 ~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnT  114 (339)
                      .+..|.+|+||||+|++.|+.++++.|++.+++.....+..|+||||+|+.+|+.+++++|++.|+   .++.+|.+|+|
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga---d~~~~d~~g~t  227 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA---DPTARMYGGRT  227 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCC
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC---CCcccccCCCC
Confidence            334488999999999999999999999999887654333459999999999999999999999986   35666999999


Q ss_pred             hHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc-chhHHHhhc-CCCCcchhchHHHH
Q 047454          115 ILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV-HPFLREAVN-NEQTPREVFTEEHK  172 (339)
Q Consensus       115 pLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n-~g~tp~dl~~~~~~  172 (339)
                      |||+|+..++.+                 .++.++ .......+| +|.||++.+.+...
T Consensus       228 pL~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          228 PLGSALLRPNPI-----------------LARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHTSSCHH-----------------HHHHHHHTTCCCCCCC---------------
T ss_pred             HHHHHHHcCCcH-----------------HHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            999999999841                 122111 111234567 99999998766543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.65  E-value=3.1e-16  Score=142.47  Aligned_cols=99  Identities=11%  Similarity=0.006  Sum_probs=67.9

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      .+++.|++.+ .+++..|.+|+||||+|+..|+.++++.|++.+++. ...+.+|+||+|+|+..++.+++++|++.+. 
T Consensus        67 ~~v~~Ll~~G-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-  143 (269)
T 4b93_B           67 KRLAKVPASG-LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNA-  143 (269)
T ss_dssp             --------CC-CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCC-
Confidence            3556666654 444455889999999999999999999999887664 4466777777777777777777777777764 


Q ss_pred             cccccccccCCCchHHHhhhcCCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                        .++.+|.+|+||||+|+..|+.
T Consensus       144 --~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B          144 --KPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             --CSCCCCTTCCCHHHHHHHTTCG
T ss_pred             --CCCCCCCCCCCHHHHHHHCCCH
Confidence              2444577777777777777765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.65  E-value=1.3e-16  Score=129.23  Aligned_cols=115  Identities=12%  Similarity=-0.002  Sum_probs=86.6

Q ss_pred             CCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccC-C
Q 047454           34 NDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNI-R  112 (339)
Q Consensus        34 ~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~-G  112 (339)
                      +.+..|.+|.||||+|++.|+.++++.|++.+.+ ++.+|..|+||||+|+. ++.+++++|++.+.   .++.+|.+ |
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~---~~~~~~~~~g   78 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGA---EPNCADPATL   78 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC---CSSCCBTTTT
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC---CCCCcCCCCC
Confidence            4445588899999999999999999999988765 35578899999999999 99999999999875   35556888 9


Q ss_pred             CchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          113 NNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       113 nTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +||||+|+..++.+                 .++.++. ....+..+ +|.||++++.+.
T Consensus        79 ~t~L~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  121 (136)
T 1d9s_A           79 TRPVHDAAREGFLD-----------------TLVVLHRAGARLDVCDAWGRLPVDLAEEQ  121 (136)
T ss_dssp             BCHHHHHHHHTCHH-----------------HHHHHHHTCCCCCCCSSSSSCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHH-----------------HHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            99999999988831                 1121111 11234556 899999887553

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.64  E-value=5.3e-16  Score=136.40  Aligned_cols=133  Identities=14%  Similarity=0.026  Sum_probs=99.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCc----ccccCCCchHhhHHHHcCChHHHHHHH
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSV----YWEDENKHTIFHVAVLHRRAEVFNLIY   96 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~----~~~d~~G~t~LH~A~~~~~~~iv~~Ll   96 (339)
                      .++++.|++..+.+.+..|.+|+||||+|+..|+.++++.|++.+++..    ..+|.+|+||||+|+.+|+.+++++|+
T Consensus        16 ~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   95 (232)
T 2rfa_A           16 VQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL   95 (232)
T ss_dssp             HHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            4778888887444555558999999999999999999999999987643    446779999999999999999999999


Q ss_pred             cccCcccccc----------ccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcc
Q 047454           97 SSTFKSNWLG----------SNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPR  164 (339)
Q Consensus        97 ~~~~~~~~~~----------~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~  164 (339)
                      +.+.+.....          ..|.+|+||||+|+..|+.+                 .++.++. ....+..+ +|.||+
T Consensus        96 ~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~d~~g~t~L  158 (232)
T 2rfa_A           96 ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE-----------------IVRLLIEHGADIRAQDSLGNTVL  158 (232)
T ss_dssp             HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHH-----------------HHHHHHHCCCCCCCCCCCCCCHH
Confidence            9876422111          11448999999999999842                 1222111 11234566 999999


Q ss_pred             hhchHH
Q 047454          165 EVFTEE  170 (339)
Q Consensus       165 dl~~~~  170 (339)
                      +++...
T Consensus       159 ~~A~~~  164 (232)
T 2rfa_A          159 HILILQ  164 (232)
T ss_dssp             HHHHTC
T ss_pred             HHHHHc
Confidence            887553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.64  E-value=7.7e-16  Score=132.24  Aligned_cols=101  Identities=10%  Similarity=0.019  Sum_probs=58.6

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      +.++.+++....+.+..|.+|+||||+|++.|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.+. 
T Consensus        19 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-   96 (201)
T 3hra_A           19 KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHAT-   96 (201)
T ss_dssp             HHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC-
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccC-
Confidence            44555555443344444666666666666666666666666665443 3356666666666666666666666664331 


Q ss_pred             cccccccccCCCchHHHhhhcCCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                       ..++..|.+|+||||+|+..++.
T Consensus        97 -~~~~~~~~~g~t~L~~A~~~~~~  119 (201)
T 3hra_A           97 -PDLNKHNRYGGNALIPAAEKGHI  119 (201)
T ss_dssp             -CCTTCCCTTSCCSHHHHHHTTCH
T ss_pred             -cccccccCCCCcHHHHHHHcCCH
Confidence             12333466666666666666653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.64  E-value=8.7e-16  Score=140.09  Aligned_cols=78  Identities=12%  Similarity=-0.051  Sum_probs=62.9

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.++
T Consensus        53 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~  130 (299)
T 1s70_B           53 TEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGA  130 (299)
T ss_dssp             HHHHHHHHHHC-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            36677777775 334444888999999999999999999999887664 5578889999999999999999999988765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.64  E-value=3.7e-16  Score=126.63  Aligned_cols=99  Identities=10%  Similarity=0.015  Sum_probs=85.6

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCC-CchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDEN-KHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~-G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+. |+.++++.|++.+++. +.+|.. |+||||+|+..|+.+++++|++.+
T Consensus        25 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  101 (136)
T 1d9s_A           25 VETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG  101 (136)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC
T ss_pred             HHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            57888888885 3444448999999999999 9999999999998774 558888 999999999999999999999998


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   .++.+|.+|+||||+|+..++.
T Consensus       102 a---~~~~~d~~g~tpl~~A~~~~~~  124 (136)
T 1d9s_A          102 A---RLDVCDAWGRLPVDLAEEQGHR  124 (136)
T ss_dssp             C---CCCCCSSSSSCHHHHHHHHTCH
T ss_pred             C---CCCccCCCCCCHHHHHHHcCCH
Confidence            5   3566699999999999999883

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.64  E-value=1.2e-15  Score=133.94  Aligned_cols=100  Identities=15%  Similarity=0.086  Sum_probs=79.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..++.+++++|++.+.
T Consensus        53 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  130 (231)
T 3aji_A           53 TEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA  130 (231)
T ss_dssp             HHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhC-CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            46777888774 333344788899999999999999999999887664 4578889999999999999999999998875


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..|+.
T Consensus       131 ---~~~~~~~~g~t~L~~A~~~~~~  152 (231)
T 3aji_A          131 ---NPDAKDHYDATAMHRAAAKGNL  152 (231)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHHTCH
T ss_pred             ---CCCCcCCCCCcHHHHHHHcCCH
Confidence               2445588899999999888875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.64  E-value=1.2e-15  Score=125.99  Aligned_cols=100  Identities=13%  Similarity=0.018  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           20 AVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      ..++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+.+|+.+++++|++. 
T Consensus        47 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-  123 (156)
T 1bd8_A           47 STAIALELLKQG-ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-  123 (156)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-
T ss_pred             CHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-
Confidence            357788888875 334444889999999999999999999999987664 56899999999999999999999999988 


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   .++.+|.+|+||||+|+..|+.
T Consensus       124 ~---~~~~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A          124 S---DLHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             S---CTTCCCTTSCCHHHHHHHSCCH
T ss_pred             c---CCCCcCCCCCCHHHHHHHcCcH
Confidence            4   3566699999999999999984

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.64  E-value=1.6e-15  Score=133.66  Aligned_cols=100  Identities=19%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. +.+.  .|.+|.||||+|+..|+.++++.|++.++...+..|..|+||||+|+..++.+++++|++.+
T Consensus        57 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  134 (237)
T 3b7b_A           57 LEAVKYLIKAGALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG  134 (237)
T ss_dssp             HHHHHHHHTTTCCCCC--CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            46777777775 4333  37788888888888888888888888876666777888888888888888888888888887


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .   .++.+|.+|+||||+|+..|+.
T Consensus       135 ~---~~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A          135 S---DINIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             C---CTTCCCTTSCCHHHHHHHHCCH
T ss_pred             C---CCCccCCCCCCHHHHHHHCCCH
Confidence            5   2445588888888888888774

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.64  E-value=9.5e-16  Score=126.48  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=86.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|++.++
T Consensus        47 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  124 (153)
T 1awc_B           47 FSTTEVLLRAG-VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47788888875 333444889999999999999999999999987764 5689999999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   ++.+|.+|+||||+|+..|+.
T Consensus       125 ~---~~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B          125 D---VHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             C---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             C---ccccCCCCCCHHHHHHHcCCH
Confidence            3   556699999999999999984

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.63  E-value=1.4e-15  Score=127.69  Aligned_cols=100  Identities=15%  Similarity=0.011  Sum_probs=86.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+.+|+.+++++|++.++
T Consensus        49 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  126 (172)
T 3v30_A           49 IETVRFLLEWG-ADPHILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGA  126 (172)
T ss_dssp             HHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47788888775 334444889999999999999999999999987764 5689999999999999999999999999985


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..++.
T Consensus       127 ---~~~~~~~~g~t~l~~A~~~~~~  148 (172)
T 3v30_A          127 ---DLTTEADSGYTPMDLAVALGYR  148 (172)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHHTCH
T ss_pred             ---CccccCCCCCCHHHHHHHhCcH
Confidence               3555699999999999999984

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.63  E-value=1.2e-15  Score=130.04  Aligned_cols=99  Identities=16%  Similarity=0.089  Sum_probs=83.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCccccc-CCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWED-ENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d-~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++  +.+.+..|.+|+||||+|+..|+.++++.|++.+++... +| .+|+||||+|+..|+.+++++|++.+
T Consensus        57 ~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  133 (183)
T 3deo_A           57 EQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVELG  133 (183)
T ss_dssp             HHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCSSSSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHhcCcHHHHHHHHHcC
Confidence            356777777  344455588999999999999999999999999877544 55 88999999999999999999999987


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   .++.+|.+|+||||+|+..++.
T Consensus       134 a---~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          134 A---DIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             C---CTTCCCTTSCCHHHHHHHHHHT
T ss_pred             C---CCcCCCCCCCCHHHHHHHhccC
Confidence            5   3556699999999999998764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.63  E-value=9.9e-16  Score=134.67  Aligned_cols=101  Identities=12%  Similarity=0.032  Sum_probs=83.9

Q ss_pred             HHHHHHHHhcc-CC---CCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCccccc-------------CCCchHhhHH
Q 047454           21 VEIVRIICKGV-IW---NDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWED-------------ENKHTIFHVA   83 (339)
Q Consensus        21 ~~iv~~L~~~~-~~---~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d-------------~~G~t~LH~A   83 (339)
                      .++++.|++.. +.   +....|.+|+||||+|+..|+.++++.|++.+++... .+             .+|+||||+|
T Consensus        50 ~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A  128 (232)
T 2rfa_A           50 LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA-RATGSVFHYRPHNLIYYGEHPLSFA  128 (232)
T ss_dssp             HHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCTTCSCCCCSSHHHHH
T ss_pred             HHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCc-ccCCcceeecccccccCCCCHHHHH
Confidence            47788888876 32   2233378999999999999999999999999776533 33             3799999999


Q ss_pred             HHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           84 VLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        84 ~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +..|+.+++++|++.++   .++.+|.+|+||||+|+..++.
T Consensus       129 ~~~~~~~~v~~Ll~~ga---~~~~~d~~g~t~L~~A~~~~~~  167 (232)
T 2rfa_A          129 ACVGSEEIVRLLIEHGA---DIRAQDSLGNTVLHILILQPNK  167 (232)
T ss_dssp             HHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHTCSCH
T ss_pred             HHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCCh
Confidence            99999999999999986   3566699999999999999984

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.63  E-value=1e-15  Score=137.10  Aligned_cols=101  Identities=10%  Similarity=-0.012  Sum_probs=81.8

Q ss_pred             HHHHHHHHhcc-C---------CCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCccccc--------------CCC
Q 047454           21 VEIVRIICKGV-I---------WNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWED--------------ENK   76 (339)
Q Consensus        21 ~~iv~~L~~~~-~---------~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d--------------~~G   76 (339)
                      .++++.|++.. +         .+....|.+|+||||+|+..|+.++++.|++.+++. +.+|              ..|
T Consensus        62 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g  140 (260)
T 3jxi_A           62 NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFG  140 (260)
T ss_dssp             CTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSC
T ss_pred             HHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCC
Confidence            35666666654 2         223333668999999999999999999999988765 3455              589


Q ss_pred             chHhhHHHHcCChHHHHHHHc---ccCccccccccccCCCchHHHhhhcCCC
Q 047454           77 HTIFHVAVLHRRAEVFNLIYS---STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        77 ~t~LH~A~~~~~~~iv~~Ll~---~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +||||+|+..|+.+++++|++   .++   .++.+|.+|+||||+|+..++.
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga---~~~~~d~~g~TpLh~A~~~~~~  189 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQA---DLRRQDSRGNTVLHALVAIADN  189 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCC---CTTCCCTTSCCHHHHHHHHCCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCC---CCcccCCCCCcHHHHHHHhccC
Confidence            999999999999999999999   664   4666699999999999998773

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.63  E-value=1.3e-15  Score=134.29  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=74.9

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCC---CcccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKG---SVYWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~---~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      .++++.|++.. .+.+..|.+|.||||+|+..|+.++++.|++.++.   ..+..|..|+||||+|+..++.+++++|++
T Consensus        59 ~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  137 (241)
T 1k1a_A           59 PSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE  137 (241)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH
Confidence            36777777765 23333377888888888888888888888888762   345567788888888888888888888888


Q ss_pred             ccCccccccccc-cCCCchHHHhhhcCCC
Q 047454           98 STFKSNWLGSND-NIRNNILHFGGKLVPS  125 (339)
Q Consensus        98 ~~~~~~~~~~~D-~~GnTpLHlA~~~~~~  125 (339)
                      .+.   .++..| .+|+||||+|+..++.
T Consensus       138 ~g~---~~~~~~~~~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A          138 RGA---DIDAVDIKSGRSPLIHAVENNSL  163 (241)
T ss_dssp             TTC---CTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             cCC---CcccccccCCCcHHHHHHHcCCH
Confidence            764   244445 7788888888888775

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.63  E-value=1.2e-15  Score=126.57  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           20 AVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      ..++++.|++.. .+.+..|.+|+||||+|++.|+.++++.|++.+++. +.+|.+|+||||+|+..|+.+++++|++.+
T Consensus        49 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  126 (162)
T 1ihb_A           49 NPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  126 (162)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcc
Confidence            357888888885 334444889999999999999999999999987664 568999999999999999999999999998


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ++  .++.+|.+|+||||+|+..++.
T Consensus       127 ~~--~~~~~~~~g~t~l~~A~~~~~~  150 (162)
T 1ihb_A          127 AS--NVGHRNHKGDTACDLARLYGRN  150 (162)
T ss_dssp             CC--CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CC--CCCCcCCCCCcHHHHHHHcCCH
Confidence            53  2455599999999999999984

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.63  E-value=6.1e-16  Score=138.45  Aligned_cols=101  Identities=9%  Similarity=0.067  Sum_probs=83.9

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.++...+.+|..|+||||+|+..++.+++++|++.+.
T Consensus        70 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  148 (253)
T 1yyh_A           70 SDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA  148 (253)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence            47788888875 33333488899999999999999999999998876667788899999999999999999999999875


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..|+.
T Consensus       149 ---~~~~~d~~g~t~L~~A~~~~~~  170 (253)
T 1yyh_A          149 ---DVNAVDDLGKSALHWAAAVNNV  170 (253)
T ss_dssp             ---CTTCBCTTSCBHHHHHHHHTCH
T ss_pred             ---CCCCcCCCCCCHHHHHHHcCCH
Confidence               3555688999999999998875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.63  E-value=1.4e-15  Score=132.80  Aligned_cols=101  Identities=9%  Similarity=0.067  Sum_probs=79.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.++...+..|..|+||||+|+..++.+++++|++.+.
T Consensus        38 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  116 (223)
T 2f8y_A           38 SDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA  116 (223)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC
Confidence            46777777774 33333478888999999988998888888888776667778888889999988888888888888764


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..++.
T Consensus       117 ---~~~~~~~~g~t~L~~A~~~~~~  138 (223)
T 2f8y_A          117 ---DVNAVDDLGKSALHWAAAVNNV  138 (223)
T ss_dssp             ---CTTCBCTTSCBHHHHHHHTTCH
T ss_pred             ---CCcCcCCCCCcHHHHHHHcCCH
Confidence               3455588888999998888873

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.63  E-value=9.3e-16  Score=124.16  Aligned_cols=99  Identities=10%  Similarity=0.034  Sum_probs=84.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+.+ .+.+|..|+||||+|+..++.+++++|++.++
T Consensus        23 ~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  100 (137)
T 3c5r_A           23 IPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA  100 (137)
T ss_dssp             HHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            46778888875 33344488999999999999999999999998765 45689999999999999999999999999976


Q ss_pred             ccccccccccCCCchHHHhhhcCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      +   ++.+|.+|+||||+|+..+.
T Consensus       101 ~---~~~~~~~g~tpl~~A~~~~~  121 (137)
T 3c5r_A          101 S---RNAVNIFGLRPVDYTDDESM  121 (137)
T ss_dssp             C---TTCCCTTSCCGGGGCCCHHH
T ss_pred             C---CCCCCCCCCCHHHHHhhccH
Confidence            3   55669999999999987765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.62  E-value=5.3e-16  Score=128.68  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=84.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCch-HhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHT-IFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t-~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+ .|+.++++.|++.+.+ ++.+|..|+| |||+|+.+|+.+++++|++.+
T Consensus        25 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g  101 (156)
T 1bi7_B           25 VEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAG  101 (156)
T ss_dssp             HHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC
Confidence            47788888874 344444889999999985 9999999999998766 4568999999 999999999999999999997


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   .++.+|.+|+||||+|+..++.
T Consensus       102 a---~~~~~d~~g~tpl~~A~~~~~~  124 (156)
T 1bi7_B          102 A---RLDVRDAWGRLPVDLAEELGHR  124 (156)
T ss_dssp             C---CSSCCCTTCCCHHHHHHHHTCH
T ss_pred             C---CCcccCCCCCCHHHHHHHhCHH
Confidence            5   3566699999999999999983

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.62  E-value=6.8e-16  Score=140.22  Aligned_cols=98  Identities=10%  Similarity=0.095  Sum_probs=60.8

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.|++.. .+++..|.+|+||||+|++.|+.++++.|++.+.+. +.+|..|+||||+|+.+|+.+++++|++.|++
T Consensus       133 ~~~~~Ll~~g-~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad  210 (269)
T 4b93_B          133 QVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGAS  210 (269)
T ss_dssp             HHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence            3445555543 223333666777777777777777777777665553 44666777777777777777777777776642


Q ss_pred             cccccccccCCCchHHHhhhcCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                         ++.+|.+|+||||+|+++++
T Consensus       211 ---~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          211 ---VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             ---SCCCCTTSCCSGGGSCTTCH
T ss_pred             ---CCCcCCCCCCHHHHHHhCCc
Confidence               44456677777777765543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.62  E-value=2.5e-15  Score=135.70  Aligned_cols=101  Identities=9%  Similarity=0.033  Sum_probs=82.5

Q ss_pred             HHHHHHHHhcc-CC-------C--CccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccC--------------CC
Q 047454           21 VEIVRIICKGV-IW-------N--DPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDE--------------NK   76 (339)
Q Consensus        21 ~~iv~~L~~~~-~~-------~--~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~--------------~G   76 (339)
                      .++++.|++.. +.       +  ....|.+|+||||+|++.|+.++++.|++.+++. +.+|.              .|
T Consensus        70 ~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g  148 (273)
T 2pnn_A           70 NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFG  148 (273)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSC
T ss_pred             hHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCC
Confidence            36777777764 21       1  1223678999999999999999999999998775 44555              79


Q ss_pred             chHhhHHHHcCChHHHHHHHc---ccCccccccccccCCCchHHHhhhcCCC
Q 047454           77 HTIFHVAVLHRRAEVFNLIYS---STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        77 ~t~LH~A~~~~~~~iv~~Ll~---~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +||||+|+.+|+.+++++|++   .++   .++.+|.+|+||||+|+..++.
T Consensus       149 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga---d~~~~d~~g~tpLh~A~~~~~~  197 (273)
T 2pnn_A          149 ELPLSLAACTNQLAIVKFLLQNSWQPA---DISARDSVGNTVLHALVEVADN  197 (273)
T ss_dssp             BSHHHHHHHTTCHHHHHHHHHCSSCCC---CTTCCCTTSCCHHHHHHHHCCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccCCC---CceeeCCCCCcHHHHHHHccCc
Confidence            999999999999999999999   665   4666699999999999998873

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.62  E-value=1e-15  Score=137.04  Aligned_cols=104  Identities=16%  Similarity=0.124  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           19 QAVEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        19 ~a~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      ...++++.|++.. +.+ ...|.+|+||||+|++.|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++
T Consensus        34 ~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  111 (253)
T 1yyh_A           34 DAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIR  111 (253)
T ss_dssp             -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3567888888876 332 223789999999999999999999999987764 5589999999999999999999999999


Q ss_pred             ccCccccccccccCCCchHHHhhhcCCCC
Q 047454           98 STFKSNWLGSNDNIRNNILHFGGKLVPSS  126 (339)
Q Consensus        98 ~~~~~~~~~~~D~~GnTpLHlA~~~~~~~  126 (339)
                      .+.  ..++.+|.+|+||||+|+..++.+
T Consensus       112 ~~~--~~~~~~~~~g~t~L~~A~~~~~~~  138 (253)
T 1yyh_A          112 NRA--TDLDARMHDGTTPLILAARLAVEG  138 (253)
T ss_dssp             STT--SCTTCCCTTCCCHHHHHHHHTCSS
T ss_pred             cCC--CCccccCCCCCcHHHHHHHcChHH
Confidence            874  235555999999999999999863

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.62  E-value=5.4e-16  Score=133.30  Aligned_cols=116  Identities=8%  Similarity=-0.059  Sum_probs=89.3

Q ss_pred             cccCCcHHHHHHHCCcH----HHHHHHHHHCCCCcccccCCCchHhhHHHHcCC------hHHHHHHHcccCcccccccc
Q 047454           39 QQLLKKAFFKAATLGIS----KFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR------AEVFNLIYSSTFKSNWLGSN  108 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~----~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~------~~iv~~Ll~~~~~~~~~~~~  108 (339)
                      |.+|+||||+|+.+|+.    ++++.|++.+.+. +.+|.+|+||||+|+..++      .+++++|++.|+   .++.+
T Consensus        35 ~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga---din~~  110 (186)
T 3t8k_A           35 SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA---DITAL  110 (186)
T ss_dssp             HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC---CSSSC
T ss_pred             ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC---CCCcc
Confidence            37899999999999985    5899999988774 6689999999999999987      578999999986   46777


Q ss_pred             ccCCC-chHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc--chhHHHhhc-CCCCcchhchHH
Q 047454          109 DNIRN-NILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV--HPFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       109 D~~Gn-TpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~--~~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      |.+|+ ||||+|+..+....            ...+.++.++  .....+.+| +|+||++++.+.
T Consensus       111 d~~g~ttpLh~A~~~~~~~~------------~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~  164 (186)
T 3t8k_A          111 YKPYKIVVFKNIFNYFVDEN------------EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC  164 (186)
T ss_dssp             BGGGTBCTTGGGGGCCSCHH------------HHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred             CCCcCchHHHHHHHcCCChh------------hHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence            99999 99999999655210            0011222222  233456778 999999998764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.61  E-value=2.2e-15  Score=131.48  Aligned_cols=129  Identities=12%  Similarity=0.124  Sum_probs=101.6

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++....+.+..+.+|.||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.+.
T Consensus        71 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  149 (223)
T 2f8y_A           71 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGA  149 (223)
T ss_dssp             HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            478888888763344555889999999999999999999999987764 5588999999999999999999999999975


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                         .++.+|.+|+||||+|+..++.+                 .++.++. ....+..+ .|.||.+++.+.
T Consensus       150 ---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  201 (223)
T 2f8y_A          150 ---NKDMQNNREETPLFLAAREGSYE-----------------TAKVLLDHFANRDITDHMDRLPRDIAQER  201 (223)
T ss_dssp             ---CTTCCCTTCCCHHHHHHHHTCHH-----------------HHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ---CCCCcCCCCcCHHHHHHHcCCHH-----------------HHHHHHHcCCCCccccccCCCHHHHHHHh
Confidence               35556999999999999999841                 1221111 11234566 899999987654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.61  E-value=1.5e-15  Score=135.82  Aligned_cols=99  Identities=10%  Similarity=0.004  Sum_probs=79.9

Q ss_pred             HHHHHHHhcc-CCCC---------ccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCC-------------Cch
Q 047454           22 EIVRIICKGV-IWND---------PQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDEN-------------KHT   78 (339)
Q Consensus        22 ~iv~~L~~~~-~~~~---------~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~-------------G~t   78 (339)
                      ++++.|++.. +.+.         ...|.+|+||||+|+..|+.++++.|++.+++. +.+|..             |+|
T Consensus        60 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~t  138 (256)
T 2etb_A           60 ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGEL  138 (256)
T ss_dssp             TTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSS
T ss_pred             HHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCC
Confidence            5677777765 3321         112567999999999999999999999998774 445654             999


Q ss_pred             HhhHHHHcCChHHHHHHHc---ccCccccccccccCCCchHHHhhhcCC
Q 047454           79 IFHVAVLHRRAEVFNLIYS---STFKSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus        79 ~LH~A~~~~~~~iv~~Ll~---~~~~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      |||+|+.+|+.+++++|++   .++   .++.+|.+|+||||+|+..++
T Consensus       139 pL~~A~~~~~~~~v~~Ll~~~~~ga---~~n~~d~~g~TpLh~A~~~~~  184 (256)
T 2etb_A          139 PLSLAACTKQWDVVTYLLENPHQPA---SLEATDSLGNTVLHALVMIAD  184 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCC---CTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCC---CcCccCCCCCCHHHHHHHccc
Confidence            9999999999999999999   665   466669999999999999543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.61  E-value=5.6e-16  Score=125.52  Aligned_cols=111  Identities=19%  Similarity=0.116  Sum_probs=88.4

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      +..|.||||+|++.|+.++++.|++.+++. +.+|..|+||||+|+.+++.+++++|++.+.   .++.+|.+|+||||+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~d~~g~t~L~~   86 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGA---DVNAVDAIGFTPLHL   86 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCcCCCCCCCHHHH
Confidence            567899999999999999999999987764 5689999999999999999999999999975   355569999999999


Q ss_pred             hhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          119 GGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       119 A~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      |+..++.+                 .++.++. ....+..| +|.||++++.+.
T Consensus        87 A~~~~~~~-----------------~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~  123 (136)
T 2jab_A           87 AAFIGHLE-----------------IAEVLLKHGADVNAQDKFGKTAFDISIGN  123 (136)
T ss_dssp             HHHHTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHcCCHH-----------------HHHHHHHcCCCCcCcCCCCCCHHHHHHHC
Confidence            99999842                 1221111 11234566 899999987654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.61  E-value=1e-15  Score=135.14  Aligned_cols=128  Identities=16%  Similarity=0.099  Sum_probs=88.0

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCC-----CcccccCCCchHhhHHHHcCChHHHHHHH
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKG-----SVYWEDENKHTIFHVAVLHRRAEVFNLIY   96 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~-----~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll   96 (339)
                      ++++.|++.. .+.+..|.+|+||||+|++.|+.++++.|++.+++     .....|..|+||||+|+.+|+.+++++|+
T Consensus        59 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  137 (236)
T 1ikn_D           59 EIAEALLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV  137 (236)
T ss_dssp             HHHHCCCSCC-CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5666666553 33344477888888888888888888888887643     24556778888888888888888888888


Q ss_pred             cccCcccccccccc-CCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454           97 SSTFKSNWLGSNDN-IRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus        97 ~~~~~~~~~~~~D~-~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +.++   .++.+|. +|+||||+|+..|+.+                 .++.++. ....+..| +|.||++++.+.
T Consensus       138 ~~g~---~~~~~~~~~g~tpL~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          138 SLGA---DVNAQEPCNGRTALHLAVDLQNPD-----------------LVSLLLKCGADVNRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             HHTC---CTTCCCTTTCCCHHHHHHHTTCHH-----------------HHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             HcCC---CCCCCCCCCCCCHHHHHHHcCCHH-----------------HHHHHHHcCCCCCcccCCCCCHHHHHHcc
Confidence            8775   3555565 8888888888888731                 2222211 11234556 889998887553

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.60  E-value=7.1e-16  Score=131.45  Aligned_cols=110  Identities=19%  Similarity=0.118  Sum_probs=87.7

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccc-cCCCchHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSND-NIRNNILH  117 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D-~~GnTpLH  117 (339)
                      +.+|.||||+|++.|+.++++.|++ +.+ ++.+|.+|+||||+|+.+|+.+++++|++.++   .++.+| .+|+||||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCSSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCcCCCCCCCCHHH
Confidence            6789999999999999999999998 444 56689999999999999999999999999985   355665 89999999


Q ss_pred             HhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          118 FGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       118 lA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +|+..|+.+                 .++.++. ....+.+| +|.||++++.+.
T Consensus       116 ~A~~~~~~~-----------------~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          116 MAAGYVRPE-----------------VVEALVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             HHHHTTCHH-----------------HHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHhcCcHH-----------------HHHHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence            999999842                 1111111 11234567 899999887654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.60  E-value=2.4e-15  Score=131.60  Aligned_cols=104  Identities=14%  Similarity=0.033  Sum_probs=82.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHC--CCCcccccCCCchHhhHHHHcCChHHHHHHHcc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAY--KGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS   98 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~--p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~   98 (339)
                      .++++.+++.........|.+|+||||+|++.|+.++++.|++.+  ++.....|..|+||||+|+..|+.+++++|++.
T Consensus        15 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   94 (228)
T 2dzn_A           15 FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR   94 (228)
T ss_dssp             HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS
T ss_pred             HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            467777777761112223788999999999999999999999988  444333788999999999999999999999998


Q ss_pred             cCccccccccccCCCchHHHhhhcCCC
Q 047454           99 TFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        99 ~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +. ...++.+|.+|+||||+|+..++.
T Consensus        95 g~-~~~~~~~~~~g~t~L~~A~~~~~~  120 (228)
T 2dzn_A           95 PL-KPDLNKITNQGVTCLHLAVGKKWF  120 (228)
T ss_dssp             SS-CCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CC-CcccccCCcCCCCHHHHHHHcCCH
Confidence            62 123555589999999999998875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.60  E-value=4.3e-15  Score=117.37  Aligned_cols=100  Identities=18%  Similarity=0.179  Sum_probs=85.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..++.+++++|++.+.
T Consensus        15 ~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~   92 (126)
T 1n0r_A           15 LEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (126)
T ss_dssp             HHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence            46778888775 333444889999999999999999999999987664 5588999999999999999999999999875


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..++.
T Consensus        93 ---~~~~~~~~g~t~l~~A~~~~~~  114 (126)
T 1n0r_A           93 ---DVNAKDKNGRTPLHLAARNGHL  114 (126)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ---CCcccCCCCCCHHHHHHHcCcH
Confidence               3555699999999999999884

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.60  E-value=7.8e-16  Score=137.64  Aligned_cols=138  Identities=14%  Similarity=0.081  Sum_probs=101.7

Q ss_pred             HhhhhhHHHH-HHHHHHHhcc-CCCCcc--ccccCCcHHHHHHHC---CcHHHHHHHHHHCCCCcc----------cccC
Q 047454           12 KEKVRNMQAV-EIVRIICKGV-IWNDPQ--NQQLLKKAFFKAATL---GISKFVQEIIAAYKGSVY----------WEDE   74 (339)
Q Consensus        12 ~~~~~~~~a~-~iv~~L~~~~-~~~~~~--~d~~g~tpLh~Aa~~---G~~~iv~~Ll~~~p~~~~----------~~d~   74 (339)
                      +...++.+.+ .+++.+++.. +.+...  .|.+|+||||+|+..   |+.++++.|++.+++...          ..|.
T Consensus         9 A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~   88 (256)
T 2etb_A            9 VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFY   88 (256)
T ss_dssp             HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTT
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccc
Confidence            4455566555 5777777775 444411  388999999999999   999999999988654321          2357


Q ss_pred             CCchHhhHHHHcCChHHHHHHHcccCccccccccccC-------------CCchHHHhhhcCCCCCcchhhhhhhHhhhH
Q 047454           75 NKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNI-------------RNNILHFGGKLVPSSEVAGAALQMQRKLEW  141 (339)
Q Consensus        75 ~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~-------------GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~  141 (339)
                      +|+||||+|+..|+.+++++|++.+++   ++.+|..             |+||||+|+..|+.                
T Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~----------------  149 (256)
T 2etb_A           89 QGHSALHIAIEKRSLQCVKLLVENGAD---VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW----------------  149 (256)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCH----------------
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcccccccccccccccccCCCCHHHHHHHcCCH----------------
Confidence            899999999999999999999999863   4444554             99999999999983                


Q ss_pred             HHHHHhhcc----hhHHHhhc-CCCCcchhchH
Q 047454          142 FKAVENLVH----PFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       142 ~~~v~~~~~----~~~~~~~n-~g~tp~dl~~~  169 (339)
                       +.++.++.    ....+..+ +|.||+.++..
T Consensus       150 -~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          150 -DVVTYLLENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             -HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             -HHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence             12222222    22345667 99999988764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.60  E-value=2e-15  Score=118.46  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      |.+|+||||+|+..|+.++++.|++.+++ ++.+|..|+||||+|+..++.+++++|++.++   .++.+|.+|+||||+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA---DVNARSKDGNTPEHL   81 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC---CTTCCCTTCCCTTHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC---CCcccCCCCCCHHHH
Confidence            88999999999999999999999998776 45689999999999999999999999999975   355569999999999


Q ss_pred             hhhcCCC
Q 047454          119 GGKLVPS  125 (339)
Q Consensus       119 A~~~~~~  125 (339)
                      |+..++.
T Consensus        82 A~~~~~~   88 (115)
T 2l6b_A           82 AKKNGHH   88 (115)
T ss_dssp             HHTTTCH
T ss_pred             HHHCCCH
Confidence            9999883

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.60  E-value=1.9e-15  Score=137.55  Aligned_cols=129  Identities=12%  Similarity=0.040  Sum_probs=82.4

Q ss_pred             HHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccc----------------------------
Q 047454           22 EIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWE----------------------------   72 (339)
Q Consensus        22 ~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~----------------------------   72 (339)
                      +.++.+++.. +...+..|.+|+||||+|++.|+.++++.|++.++...+..                            
T Consensus        90 ~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~L  169 (276)
T 4hbd_A           90 VTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQL  169 (276)
T ss_dssp             HHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHH
Confidence            3444444444 32334448888999999999999999999888876333333                            


Q ss_pred             ----------cCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHH
Q 047454           73 ----------DENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWF  142 (339)
Q Consensus        73 ----------d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~  142 (339)
                                |..|+||||+|+.+|+.+++++|++.|+   .++.+|.+|+||||+|+..|+.                 
T Consensus       170 l~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga---d~n~~d~~G~TpLh~A~~~g~~-----------------  229 (276)
T 4hbd_A          170 FRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEA---DVNVQDDDGSTALMCACEHGHK-----------------  229 (276)
T ss_dssp             HHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCH-----------------
T ss_pred             HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC---CCCCCCCCCCCHHHHHHHCCCH-----------------
Confidence                      3456677777777777777777777664   2444567777777777777662                 


Q ss_pred             HHHHhhcc--hhHHHhhc-CCCCcchhchHH
Q 047454          143 KAVENLVH--PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       143 ~~v~~~~~--~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +.++.++.  ....+..| +|.||++++.+.
T Consensus       230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          230 EIAGLLLAVPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHc
Confidence            22333222  22345567 899999887654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.59  E-value=4.2e-15  Score=123.93  Aligned_cols=98  Identities=13%  Similarity=0.017  Sum_probs=83.9

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|++.|+.++++.|++.+.+. +.+|..|+||||+|+.+|+.+++++|++.++
T Consensus        55 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  132 (165)
T 3twr_A           55 VSVVEYLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGA  132 (165)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcC-CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47888888875 334444889999999999999999999999987664 5589999999999999999999999999985


Q ss_pred             ccccccccccCCCchHHHhhhcCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                         .++.+|.+|+||||+|.. ++
T Consensus       133 ---~~~~~~~~g~t~l~~a~~-~~  152 (165)
T 3twr_A          133 ---DPTKKNRDGNTPLDLVKD-GD  152 (165)
T ss_dssp             ---CTTCCCTTSCCTGGGSCT-TC
T ss_pred             ---CCcccCCCCCChhHhHhc-CC
Confidence               355669999999999877 65

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.59  E-value=2.2e-15  Score=140.43  Aligned_cols=102  Identities=11%  Similarity=0.093  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHhcc---CCCCcc-ccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC---h
Q 047454           17 NMQAVEIVRIICKGV---IWNDPQ-NQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR---A   89 (339)
Q Consensus        17 ~~~a~~iv~~L~~~~---~~~~~~-~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~---~   89 (339)
                      |.++.+.++.+.+.+   +.+.+. .|.+|+||||+|++.|+.++++.|++.+++. +.+|.+|+||||+|+.+|+   .
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccH
Confidence            556666666666655   566666 5999999999999999999999999998765 5689999999999999998   6


Q ss_pred             HHHHHHHcccCccccccccccCCCchHHHhhh
Q 047454           90 EVFNLIYSSTFKSNWLGSNDNIRNNILHFGGK  121 (339)
Q Consensus        90 ~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~  121 (339)
                      ++++.|++.+.  ..++.+|.+|+||||+|+.
T Consensus       181 ~~~~~ll~~~~--~~~~~~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          181 GTFEALLDYLY--PCLILEDSMNRTILHHIII  210 (327)
T ss_dssp             TCHHHHHHHHG--GGGGEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHhhh--ccccCCCCCCCCHHHHHHH
Confidence            88888887752  2466669999999999998

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.59  E-value=6.4e-15  Score=123.65  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..++.+++++|++.++
T Consensus        60 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  137 (169)
T 2y1l_E           60 LEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGA  137 (169)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47888888875 333444889999999999999999999999987764 5589999999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   ++.+|.+|+||||+|+..++.
T Consensus       138 ~---~~~~~~~g~t~l~~A~~~~~~  159 (169)
T 2y1l_E          138 D---VNAQDKFGKTAFDISIDNGNE  159 (169)
T ss_dssp             C---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             C---CCCcCCCCCCHHHHHHHhCCH
Confidence            3   555699999999999999984

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.59  E-value=3.1e-15  Score=132.54  Aligned_cols=97  Identities=14%  Similarity=0.104  Sum_probs=73.1

Q ss_pred             HHHHhcc-CCCC-ccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCcc
Q 047454           25 RIICKGV-IWND-PQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKS  102 (339)
Q Consensus        25 ~~L~~~~-~~~~-~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~  102 (339)
                      +.|+++. +.+. +..+.+|.||||+|++.|+.++++.|++.+++. +.+|.+|+||||+|+..|+.+++++|++.++  
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga--   78 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGA--   78 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC--
Confidence            4455554 3222 223677889999999999999999999887764 5588899999999999999999999998875  


Q ss_pred             ccccccccCCCchHHHhhhcCCC
Q 047454          103 NWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       103 ~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                       .++.+|.+|+||||+|+..|+.
T Consensus        79 -~~n~~d~~g~tpLh~A~~~g~~  100 (229)
T 2vge_A           79 -NVNSPDSHGWTPLHCAASCNDT  100 (229)
T ss_dssp             -CTTCCCTTCCCHHHHHHHTTCH
T ss_pred             -CCCCCCCCCCCHHHHHHHcCCH
Confidence             3556688999999999998873

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.59  E-value=3.1e-15  Score=118.25  Aligned_cols=109  Identities=20%  Similarity=0.168  Sum_probs=86.8

Q ss_pred             cCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhh
Q 047454           41 LLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGG  120 (339)
Q Consensus        41 ~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~  120 (339)
                      +|+||||+|++.|+.++++.|++.+++. +..|..|+||||+|+..++.+++++|++.+.   .++.+|.+|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC---CCcccCCCCCcHHHHHH
Confidence            5899999999999999999999987764 5588999999999999999999999999875   35556999999999999


Q ss_pred             hcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          121 KLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       121 ~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      ..++.+                 .++.++. ....+..| +|.||.+++.+.
T Consensus        77 ~~~~~~-----------------~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~  111 (126)
T 1n0r_A           77 RNGHLE-----------------VVKLLLEAGADVNAKDKNGRTPLHLAARN  111 (126)
T ss_dssp             HTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HcChHH-----------------HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            998831                 1111111 11234556 899999887553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.59  E-value=5.7e-15  Score=130.06  Aligned_cols=101  Identities=17%  Similarity=0.084  Sum_probs=84.2

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|++.|+.++++.|++.+.+ .+.+|..|+||||+|+..|+.+++++|++.+.
T Consensus        24 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  101 (237)
T 3b7b_A           24 VDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ  101 (237)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcC-CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            46788888875 33344488899999999999999999999988765 35588999999999999999999999999872


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                        ..++..|..|.||||+|+..++.
T Consensus       102 --~~~~~~~~~g~t~L~~A~~~~~~  124 (237)
T 3b7b_A          102 --MDVNCQDDGGWTPMIWATEYKHV  124 (237)
T ss_dssp             --CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             --CCcccCCCCCCCHHHHHHHcCCH
Confidence              24555589999999999999885

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.59  E-value=1.8e-15  Score=132.65  Aligned_cols=111  Identities=14%  Similarity=0.175  Sum_probs=85.6

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcc-cCccccccccccCCCchHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS-TFKSNWLGSNDNIRNNILH  117 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~-~~~~~~~~~~D~~GnTpLH  117 (339)
                      |.+|.||||+|+..|+.++++.|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++. +.   .++.+|.+|+||||
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~---~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI---ELNQQNKLGDTALH  145 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC---CCCCCCTTSCCHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC---CccccCCCCCCHHH
Confidence            66789999999999999999999987766 456888999999999999999999999987 54   35556999999999


Q ss_pred             HhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          118 FGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       118 lA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +|+..|+.+                 .++.++. ....+..| +|.||++++...
T Consensus       146 ~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  183 (222)
T 3ehr_A          146 AAAWKGYAD-----------------IVQLLLAKGARTDLRNIEKKLAFDMATNA  183 (222)
T ss_dssp             HHHHHTCHH-----------------HHHHHHHHTCCSCCCCTTSCCHHHHCCSH
T ss_pred             HHHHcCCHH-----------------HHHHHHHcCCCCccccCCCCCHHHHhcch
Confidence            999998831                 1111111 11234567 899999887653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.59  E-value=2.5e-15  Score=135.44  Aligned_cols=104  Identities=17%  Similarity=0.092  Sum_probs=79.4

Q ss_pred             HHHHHHHHhcc-CCC-CccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcc
Q 047454           21 VEIVRIICKGV-IWN-DPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS   98 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~-~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~   98 (339)
                      .++++.|++.. +.+ .+..|..|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.
T Consensus        22 ~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  100 (282)
T 1oy3_D           22 EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQP  100 (282)
T ss_dssp             HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSS
T ss_pred             HHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhhhcc
Confidence            35677777765 322 3444888999999999999999999999887664 45788899999999999999999999886


Q ss_pred             cCcc--------------------------------------------ccccccccCCCchHHHhhhcCCC
Q 047454           99 TFKS--------------------------------------------NWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        99 ~~~~--------------------------------------------~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ++..                                            ..++.+|.+|+||||+|+..|+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~  171 (282)
T 1oy3_D          101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA  171 (282)
T ss_dssp             CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCH
Confidence            5320                                            11334488999999999988875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.58  E-value=7.2e-15  Score=136.29  Aligned_cols=78  Identities=18%  Similarity=0.100  Sum_probs=58.7

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +..|..|+||||+|+.+|+.+++++|++.+.
T Consensus        71 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  148 (351)
T 3utm_A           71 VRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGA  148 (351)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36777777774 333334778888888888888888888888876654 4577888888888888888888888877543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.58  E-value=7.5e-15  Score=122.61  Aligned_cols=100  Identities=13%  Similarity=0.036  Sum_probs=86.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..|+.+++++|++.++
T Consensus        49 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  126 (167)
T 3v31_A           49 IAVVEFLLQNG-ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGA  126 (167)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47888888885 334444889999999999999999999999997764 5589999999999999999999999999875


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   ++.+|.+|+||||+|+..|+.
T Consensus       127 ~---~~~~~~~g~t~l~~A~~~~~~  148 (167)
T 3v31_A          127 D---PTIETDSGYNSMDLAVALGYR  148 (167)
T ss_dssp             C---TTCCCTTSCCHHHHHHHHTCH
T ss_pred             C---CCCcCCCCCCHHHHHHHcCcH
Confidence            3   555699999999999999984

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.58  E-value=6.6e-15  Score=126.33  Aligned_cols=101  Identities=8%  Similarity=0.045  Sum_probs=83.9

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|+..|+.++++.|++.++...+..|..|+||||+|+.+|+.+++++|++.+.
T Consensus        52 ~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  130 (201)
T 3hra_A           52 IEIAKALIDRG-ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR  130 (201)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            47788888875 33333488899999999999999999999977776677788999999999999999999999999872


Q ss_pred             ccccccccccCCCchHHHhhhcCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                        ..++.+|.+|+||||+|+..++
T Consensus       131 --~~~~~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A          131 --EDIDFQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             --CCTTCCCTTSCCHHHHHHHSSC
T ss_pred             --CCcCCCCCCCCCHHHHHHHhcc
Confidence              2456668999999999998876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.58  E-value=2.9e-15  Score=134.08  Aligned_cols=111  Identities=10%  Similarity=0.031  Sum_probs=85.4

Q ss_pred             HhhhhhHHHH-HHHHHHHhcc-CCCCccc--cccCCcHHHHHH---HCCcHHHHHHHHHHCCC----------CcccccC
Q 047454           12 KEKVRNMQAV-EIVRIICKGV-IWNDPQN--QQLLKKAFFKAA---TLGISKFVQEIIAAYKG----------SVYWEDE   74 (339)
Q Consensus        12 ~~~~~~~~a~-~iv~~L~~~~-~~~~~~~--d~~g~tpLh~Aa---~~G~~~iv~~Ll~~~p~----------~~~~~d~   74 (339)
                      +...++.+.+ .+++.+.+.. +.+....  |.+|+||||+|+   +.|+.++++.|++.+.+          .....|.
T Consensus        12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~   91 (260)
T 3jxi_A           12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY   91 (260)
T ss_dssp             HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence            3334444444 5677777776 5555533  578999999999   78999999999997532          1234566


Q ss_pred             CCchHhhHHHHcCChHHHHHHHcccCccccccccc--------------cCCCchHHHhhhcCCC
Q 047454           75 NKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSND--------------NIRNNILHFGGKLVPS  125 (339)
Q Consensus        75 ~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D--------------~~GnTpLHlA~~~~~~  125 (339)
                      +|+||||+|+..|+.+++++|++.+++   ++.+|              .+|+||||+|+..|+.
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  153 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVEKGAD---VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP  153 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC---cCccccccccCcccccccccCCCCHHHHHHHcCCH
Confidence            999999999999999999999999863   44445              6899999999999984

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.58  E-value=2.4e-15  Score=117.56  Aligned_cols=83  Identities=19%  Similarity=0.155  Sum_probs=74.3

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      |.+|.||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|++.++   .++.+|.+|+||||+
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGA---DVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CccccccCCCcHHHH
Confidence            889999999999999999999999987664 5589999999999999999999999999975   355569999999999


Q ss_pred             hhhcCCC
Q 047454          119 GGKLVPS  125 (339)
Q Consensus       119 A~~~~~~  125 (339)
                      |+..++.
T Consensus        97 A~~~~~~  103 (110)
T 2zgd_A           97 SIDNGNE  103 (110)
T ss_dssp             HHHHTCH
T ss_pred             HHHcCCH
Confidence            9999883

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.58  E-value=6.3e-15  Score=126.06  Aligned_cols=100  Identities=11%  Similarity=-0.045  Sum_probs=86.3

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.++
T Consensus        81 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  158 (192)
T 2rfm_A           81 LGIAEKLLSKG-SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGA  158 (192)
T ss_dssp             HHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            47788888875 333444889999999999999999999999987764 5689999999999999999999999999975


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..++.
T Consensus       159 ---~~~~~~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          159 ---DISARDLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             ---CTTCBCTTSCBHHHHHHHTTCH
T ss_pred             ---CCCCcCCCCCCHHHHHHHhCcH
Confidence               3556699999999999999984

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.58  E-value=4.1e-15  Score=132.89  Aligned_cols=98  Identities=16%  Similarity=0.096  Sum_probs=83.3

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCccccc-CCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWED-ENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d-~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      ++++.|++  +.+.+..|.+|+||||+|+..|+.++++.|++.+++... +| ..|+||||+|+.+|+.+++++|++.++
T Consensus        59 ~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  135 (244)
T 3ui2_A           59 QALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVELGA  135 (244)
T ss_dssp             HHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            56677776  345555589999999999999999999999999877644 55 889999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..++.
T Consensus       136 ---~~~~~d~~g~t~l~~A~~~~~~  157 (244)
T 3ui2_A          136 ---DIEVEDERGLTALELAREILKT  157 (244)
T ss_dssp             ---CTTCCCTTCCCHHHHHHHHHTT
T ss_pred             ---CCCCCCCCCCcHHHHHHHHHhc
Confidence               3556699999999999987764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.58  E-value=1.8e-15  Score=140.98  Aligned_cols=131  Identities=18%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCc---HHHHHHHHHHCCCCcccccCCCchHhhHHHH----cCChHHHH
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGI---SKFVQEIIAAYKGSVYWEDENKHTIFHVAVL----HRRAEVFN   93 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~---~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~----~~~~~iv~   93 (339)
                      .++++.|++.. .+++..|.+|+||||+|+..|+   .++++.|++.....++.+|.+|+||||+|+.    .|+.++++
T Consensus       144 ~~~v~~Ll~~G-ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~  222 (327)
T 1sw6_A          144 LELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK  222 (327)
T ss_dssp             HHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHH
Confidence            47888899885 4444458999999999999999   7888888888755567899999999999999    89999999


Q ss_pred             HHHcccC--------------------ccc----------------------cccccccCCCchHHHhhhcCCCCCcchh
Q 047454           94 LIYSSTF--------------------KSN----------------------WLGSNDNIRNNILHFGGKLVPSSEVAGA  131 (339)
Q Consensus        94 ~Ll~~~~--------------------~~~----------------------~~~~~D~~GnTpLHlA~~~~~~~~v~~~  131 (339)
                      +|++.+.                    +..                      .++.+|.+|+||||+|+..|+.+     
T Consensus       223 ~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~-----  297 (327)
T 1sw6_A          223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS-----  297 (327)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHH-----
T ss_pred             HHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHH-----
Confidence            9987631                    000                      24555899999999999998831     


Q ss_pred             hhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchH
Q 047454          132 ALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       132 ~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~  169 (339)
                                  .++.++. ....+.+| +|+||++++.+
T Consensus       298 ------------~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          298 ------------IVDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             ------------HHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             ------------HHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence                        2222221 12345677 99999998753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.58  E-value=6.1e-15  Score=129.36  Aligned_cols=100  Identities=11%  Similarity=0.055  Sum_probs=81.7

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      +.++.+++......+..|.+|.||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+..|+.+++++|++.+. 
T Consensus        20 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-   97 (231)
T 3aji_A           20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGA-   97 (231)
T ss_dssp             HHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCC-
Confidence            56666666642223334888999999999999999999999987664 5588999999999999999999999999875 


Q ss_pred             cccccccccCCCchHHHhhhcCCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                        .++.+|.+|.||||+|+..++.
T Consensus        98 --~~~~~~~~g~t~L~~A~~~~~~  119 (231)
T 3aji_A           98 --HVNAVNQNGCTPLHYAASKNRH  119 (231)
T ss_dssp             --CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             --CCCCCCCCCCCHHHHHHHcCCH
Confidence              3555689999999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.57  E-value=1.6e-14  Score=127.55  Aligned_cols=101  Identities=10%  Similarity=0.048  Sum_probs=84.7

Q ss_pred             HHHHHHHHhcc-CCC----CccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccC-CCchHhhHHHHcCChHHHHH
Q 047454           21 VEIVRIICKGV-IWN----DPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDE-NKHTIFHVAVLHRRAEVFNL   94 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~----~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~-~G~t~LH~A~~~~~~~iv~~   94 (339)
                      .++++.|++.. ...    .+..|.+|.||||+|+..|+.++++.|++.+++. +.+|. .|+||||+|+..|+.+++++
T Consensus        91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~  169 (236)
T 1ikn_D           91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSL  169 (236)
T ss_dssp             HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            46778888775 211    2333888999999999999999999999998775 44666 99999999999999999999


Q ss_pred             HHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           95 IYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        95 Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      |++.|++   ++.+|.+|+||||+|+..++.
T Consensus       170 Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~  197 (236)
T 1ikn_D          170 LLKCGAD---VNRVTYQGYSPYQLTWGRPST  197 (236)
T ss_dssp             HHTTTCC---SCCCCTTCCCGGGGCTTSSCH
T ss_pred             HHHcCCC---CCcccCCCCCHHHHHHccCch
Confidence            9999863   556699999999999999884

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.57  E-value=3.6e-15  Score=130.65  Aligned_cols=100  Identities=10%  Similarity=0.057  Sum_probs=85.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.....++.+|.+|+||||+|+..|+.+++++|++.++
T Consensus        86 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  164 (222)
T 3ehr_A           86 LSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA  164 (222)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            46788888875 33444488999999999999999999999998444467789999999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhhhcCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      +   ++.+|.+|+||||+|+..++
T Consensus       165 ~---~~~~~~~g~t~l~~A~~~~~  185 (222)
T 3ehr_A          165 R---TDLRNIEKKLAFDMATNAAC  185 (222)
T ss_dssp             C---SCCCCTTSCCHHHHCCSHHH
T ss_pred             C---CccccCCCCCHHHHhcchhH
Confidence            3   55669999999999998776

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.57  E-value=6.8e-15  Score=124.54  Aligned_cols=99  Identities=10%  Similarity=0.010  Sum_probs=85.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..++.+++++|++.++
T Consensus        52 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  129 (179)
T 3f6q_A           52 SAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGA  129 (179)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            37788888885 334444889999999999999999999999987764 5689999999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhhhcCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      +   ++.+|.+|+||||+|+..++
T Consensus       130 ~---~~~~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A          130 L---VSICNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             C---SSBCCTTSCCGGGGSCHHHH
T ss_pred             C---cchhccCCCCcHHHHHHHHH
Confidence            3   55569999999999988766

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.56  E-value=1.1e-14  Score=132.82  Aligned_cols=100  Identities=11%  Similarity=0.006  Sum_probs=83.5

Q ss_pred             HHHHHHHhcc-CCC----CccccccCCcHHHHHHHC---CcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHH
Q 047454           22 EIVRIICKGV-IWN----DPQNQQLLKKAFFKAATL---GISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFN   93 (339)
Q Consensus        22 ~iv~~L~~~~-~~~----~~~~d~~g~tpLh~Aa~~---G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~   93 (339)
                      +.+..+++.. +.+    .+..|..|+||||+|+..   |+.++++.|++.+++. +.+|.+|+||||+|+.+|+.++++
T Consensus       144 ~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~v~  222 (278)
T 1dcq_A          144 FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLK  222 (278)
T ss_dssp             HHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHHHH
Confidence            3455555554 332    233378899999999999   9999999999998774 568999999999999999999999


Q ss_pred             HHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           94 LIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +|++.|+   .++.+|.+|+||||+|+..|+.
T Consensus       223 ~Ll~~ga---d~~~~d~~g~tpL~~A~~~~~~  251 (278)
T 1dcq_A          223 LLLRGKA---SIEIANESGETPLDIAKRLKHE  251 (278)
T ss_dssp             HHHHTTC---CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcCC---CCCCccCCCCCHHHHHHHcCCH
Confidence            9999986   3666799999999999999984

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.56  E-value=8.2e-15  Score=141.13  Aligned_cols=98  Identities=12%  Similarity=0.104  Sum_probs=58.5

Q ss_pred             HHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           22 EIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        22 ~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      ++++.|++.. +.+.  .+.+|.||||+|++.|+.++++.|++.+++. +..|..|+||||+|+..|+.+++++|++.+.
T Consensus       226 ~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  302 (437)
T 1n11_A          226 EVARSLLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGV  302 (437)
T ss_dssp             HHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCc
Confidence            5556666554 3322  2556666666666666666666666655443 3356666666666666666666666666653


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|..|+||||+|+..|+.
T Consensus       303 ---~~~~~~~~g~t~L~~A~~~g~~  324 (437)
T 1n11_A          303 ---MVDATTRMGYTPLHVASHYGNI  324 (437)
T ss_dssp             ---CTTCCCSSCCCHHHHHHHSSCS
T ss_pred             ---cCCCCCCCCCCHHHHHHHcCcH
Confidence               2333466666666666666654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=131.90  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHc-
Q 047454           19 QAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS-   97 (339)
Q Consensus        19 ~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~-   97 (339)
                      ...++++.+++.. .+....|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+.+|+.+++++|++ 
T Consensus       161 ~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  238 (276)
T 4hbd_A          161 DDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAV  238 (276)
T ss_dssp             HHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTS
T ss_pred             hhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence            4457777777775 222233788999999999999999999999998774 5689999999999999999999999999 


Q ss_pred             ccCccccccccccCCCchHHHhhhcCCC
Q 047454           98 STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        98 ~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .++   .++.+|.+|+||||+|+..|+.
T Consensus       239 ~ga---d~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          239 PSC---DISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             TTC---CTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCC---CCcCcCCCCCCHHHHHHHcCCH
Confidence            664   3556699999999999999984

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=129.28  Aligned_cols=100  Identities=13%  Similarity=-0.022  Sum_probs=84.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+.+|+.+++++|++.++
T Consensus        34 ~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga  111 (229)
T 2vge_A           34 LEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGA  111 (229)
T ss_dssp             HHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47778888775 344445899999999999999999999999987664 5689999999999999999999999999986


Q ss_pred             ccccccccc-cCCCchHHHh--hhcCCC
Q 047454          101 KSNWLGSND-NIRNNILHFG--GKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D-~~GnTpLHlA--~~~~~~  125 (339)
                         .++.+| .+|+||||+|  +..++.
T Consensus       112 ---~~~~~~~~~g~tpL~~A~a~~~~~~  136 (229)
T 2vge_A          112 ---AIFATTLSDGATAFEKCDPYREGYA  136 (229)
T ss_dssp             ---CTTCCCSSTTCCTGGGCCTTSTTHH
T ss_pred             ---CcccccCCCCCCHHHHHHHHhcChH
Confidence               355664 6999999999  777764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.55  E-value=8.7e-15  Score=137.67  Aligned_cols=115  Identities=13%  Similarity=0.108  Sum_probs=91.1

Q ss_pred             ccccCCcHHHHHHHCC--cHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccc--cccccccCCC
Q 047454           38 NQQLLKKAFFKAATLG--ISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSN--WLGSNDNIRN  113 (339)
Q Consensus        38 ~d~~g~tpLh~Aa~~G--~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~--~~~~~D~~Gn  113 (339)
                      .|.+|.||||+|+..|  +.++++.|++.+.+. +.+|..|+||||+|+.+|+.+++++|++.+++..  .++.+|.+|+
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            5788999999999999  999999999997664 5689999999999999999999999999875311  1455599999


Q ss_pred             chHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          114 NILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       114 TpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      ||||+|+..|+.+                 .++.++. ....+..| +|.||++++.+.
T Consensus       213 t~L~~A~~~g~~~-----------------~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          213 SHLHWAILINWED-----------------VAMRFVEMGIDVNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             CTTHHHHTTTCHH-----------------HHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cHHHHHHHcCCHH-----------------HHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            9999999999842                 2222221 12245667 999999987654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.55  E-value=1.8e-14  Score=133.06  Aligned_cols=100  Identities=15%  Similarity=0.099  Sum_probs=83.2

Q ss_pred             HHHHHHHhcc-CCCCc----cccccCCcHHHHHHHC---CcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHH
Q 047454           22 EIVRIICKGV-IWNDP----QNQQLLKKAFFKAATL---GISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFN   93 (339)
Q Consensus        22 ~iv~~L~~~~-~~~~~----~~d~~g~tpLh~Aa~~---G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~   93 (339)
                      +.++.+++.. +.+..    ..|.+|+||||+|+..   |+.++++.|++.+++. +.+|.+|+||||+|+..|+.++++
T Consensus       165 ~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~  243 (301)
T 2b0o_E          165 LSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLK  243 (301)
T ss_dssp             HHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHH
Confidence            3455666664 44331    0378899999999997   8999999999998764 568999999999999999999999


Q ss_pred             HHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           94 LIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +|++.+++   ++.+|.+|+||||+|+..++.
T Consensus       244 ~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~  272 (301)
T 2b0o_E          244 LLLKGRAL---VGTVNEAGETALDIARKKHHK  272 (301)
T ss_dssp             HHHHTTCC---CSCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHcCCC---CCCcCCCCCCHHHHHHHcCCH
Confidence            99999863   566699999999999999983

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.55  E-value=1.3e-14  Score=134.44  Aligned_cols=100  Identities=15%  Similarity=0.015  Sum_probs=85.3

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      +.++.+++..+.+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..|+.+++++|++.+. 
T Consensus        38 ~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-  115 (351)
T 3utm_A           38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGA-  115 (351)
T ss_dssp             HHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCCC-
Confidence            45666665545555556899999999999999999999999987764 5689999999999999999999999999975 


Q ss_pred             cccccccccCCCchHHHhhhcCCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                        .++.+|.+|.||||+|+..|+.
T Consensus       116 --~~~~~~~~g~t~L~~A~~~~~~  137 (351)
T 3utm_A          116 --CVNAMDLWQFTPLHEAASKNRV  137 (351)
T ss_dssp             --CTTCCCTTCCCHHHHHHHTTCH
T ss_pred             --CCCCCCCCCCCHHHHHHHcCCH
Confidence              3555699999999999999984

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.55  E-value=1.3e-14  Score=129.00  Aligned_cols=100  Identities=13%  Similarity=-0.012  Sum_probs=81.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.++
T Consensus        50 ~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  127 (239)
T 1ycs_B           50 FDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGA  127 (239)
T ss_dssp             HHHHHHHTSTT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36777787775 244444889999999999999999999999987764 6689999999999999999999999999986


Q ss_pred             ccccccccccCCC-chHHHh--hhcCCC
Q 047454          101 KSNWLGSNDNIRN-NILHFG--GKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~Gn-TpLHlA--~~~~~~  125 (339)
                         .++.+|.+|. ||||+|  +..|+.
T Consensus       128 ---~~~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B          128 ---AVFAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             ---CTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             ---CcceecCCCCcchHHHHHHhhhccH
Confidence               3555666665 999999  566664

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.55  E-value=3.1e-15  Score=133.67  Aligned_cols=109  Identities=19%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccc-cCCCchHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSND-NIRNNILH  117 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D-~~GnTpLH  117 (339)
                      +.+|.||||+|++.|+.++++.|++ +.+ ++.+|.+|+||||+|+.+|+.+++++|++.++   .++.+| .+|+||||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC---CTTCCCSSSCCCHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC---CCCcCCCCCCCCHHH
Confidence            5689999999999999999999998 544 56689999999999999999999999999986   355665 88999999


Q ss_pred             HhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchH
Q 047454          118 FGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       118 lA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~  169 (339)
                      +|+..|+.+                 .++.++. ....+..| +|.||++++.+
T Consensus       117 ~A~~~g~~~-----------------~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          117 MAAGYVRPE-----------------VVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHcCCHH-----------------HHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            999999842                 1221111 11234566 88899888754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.54  E-value=2.5e-14  Score=125.93  Aligned_cols=110  Identities=15%  Similarity=0.058  Sum_probs=84.8

Q ss_pred             HhhhhhHHHHHHHHHHHhc---cCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC
Q 047454           12 KEKVRNMQAVEIVRIICKG---VIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR   88 (339)
Q Consensus        12 ~~~~~~~~a~~iv~~L~~~---~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~   88 (339)
                      +...++.+.   ++.|++.   .+.+.+..|.+|+||||+|+..|+.++++.|++.+.+. +..|..|+||||+|+..++
T Consensus        16 A~~~g~~~~---v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~   91 (241)
T 1k1a_A           16 AVVQGNLPA---VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRS   91 (241)
T ss_dssp             HHHTTCHHH---HHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHcCCHHH---HHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC
Confidence            334444444   4444442   24445555889999999999999999999999987664 5578999999999999999


Q ss_pred             hHHHHHHHcccCccc-cccccccCCCchHHHhhhcCCC
Q 047454           89 AEVFNLIYSSTFKSN-WLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        89 ~~iv~~Ll~~~~~~~-~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .+++++|++.+.... .++..|.+|+||||+|+..++.
T Consensus        92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  129 (241)
T 1k1a_A           92 PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ  129 (241)
T ss_dssp             HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH
Confidence            999999999874221 2344489999999999999885

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.54  E-value=1.6e-14  Score=135.94  Aligned_cols=102  Identities=10%  Similarity=0.121  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCC----cccccCCCchHhhHHHHcCChHHHHHH
Q 047454           20 AVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGS----VYWEDENKHTIFHVAVLHRRAEVFNLI   95 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~----~~~~d~~G~t~LH~A~~~~~~~iv~~L   95 (339)
                      ..++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++.    ++..|..|+||||+|+.+|+.+++++|
T Consensus       152 ~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  230 (364)
T 3ljn_A          152 YLEMIKILVQLG-ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF  230 (364)
T ss_dssp             GHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHH
T ss_pred             hHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            457888888885 444444899999999999999999999999998773    566899999999999999999999999


Q ss_pred             HcccCccccccccccCCCchHHHhhhcCCC
Q 047454           96 YSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        96 l~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ++.|++   ++.+|.+|+||||+|+..|+.
T Consensus       231 l~~gad---~~~~d~~g~tpL~~A~~~g~~  257 (364)
T 3ljn_A          231 VEMGID---VNMEDNEHTVPLYLSVRAAMV  257 (364)
T ss_dssp             HTTTCC---TTCCCTTSCCHHHHHHHTCCH
T ss_pred             HHcCCC---CCCCCCCCCCHHHHHHHhChH
Confidence            999863   566699999999999999984

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.54  E-value=2.3e-14  Score=130.82  Aligned_cols=99  Identities=12%  Similarity=0.017  Sum_probs=73.0

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++..  .+.+|+||||+|+..|+.+++++|++.+.
T Consensus       105 ~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  181 (285)
T 3d9h_A          105 LSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGG  181 (285)
T ss_dssp             HHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            36777777764 3333347788888888888888888888888766542  34558888888888888888888888764


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|+||||+|+..++.
T Consensus       182 ---~~~~~d~~g~t~L~~A~~~~~~  203 (285)
T 3d9h_A          182 ---NIDHKISHLGTPLYLACENQQR  203 (285)
T ss_dssp             ---CTTCCBTTTBCHHHHHHHTTCH
T ss_pred             ---CCCCcCCCCCCHHHHHHHcCcH
Confidence               3445578888888888888775

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.54  E-value=4.4e-15  Score=132.00  Aligned_cols=98  Identities=14%  Similarity=0.027  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .+.++.+++.. +.+.   +..|.||||.|+..|+.++++.|++.+++ .+.+|.+|+||||+|+.+|+.+++++|++.+
T Consensus        18 ~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   93 (239)
T 1ycs_B           18 RKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFG   93 (239)
T ss_dssp             ----------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            35666777765 4443   46689999999999999999999998775 4668999999999999999999999999997


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   .++.+|.+|+||||+|+..|+.
T Consensus        94 a---~~~~~d~~g~tpL~~A~~~~~~  116 (239)
T 1ycs_B           94 V---NVNAADSDGWTPLHCAASCNNV  116 (239)
T ss_dssp             C---CTTCCCTTCCCHHHHHHHTTCH
T ss_pred             C---CCCccCCCCCCHHHHHHHcCCH
Confidence            5   3666699999999999999984

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.53  E-value=2.9e-14  Score=135.35  Aligned_cols=101  Identities=11%  Similarity=-0.036  Sum_probs=86.3

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. +.+....+.+|.||||+|+..|+.++++.|++.+.+. +.+|.+|+||||+|+..|+.+++++|++.+
T Consensus       213 ~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~LL~~G  291 (368)
T 3jue_A          213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKRG  291 (368)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCcHHHHHHHHHCc
Confidence            46778888776 5554422388999999999999999999999987764 568999999999999999999999999998


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   .++.+|.+|+||||+|+..++.
T Consensus       292 a---d~~~~d~~G~TpL~~A~~~g~~  314 (368)
T 3jue_A          292 A---DLGARDSEGRDPLTIAMETANA  314 (368)
T ss_dssp             C---CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             C---CCCCcCCCCCCHHHHHHHCCCH
Confidence            6   3566699999999999999984

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.53  E-value=5.2e-15  Score=122.62  Aligned_cols=110  Identities=13%  Similarity=-0.021  Sum_probs=86.6

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCc-hHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNN-ILH  117 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnT-pLH  117 (339)
                      ++.|.||||+|++.|+.++++.|++.+++ .+.+|..|+||||+|+ +|+.+++++|++.+.   .++.+|.+|+| |||
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~---~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGA---EPNCADPATLTRPVH   83 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC---CCCCCCTTTCCCHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC---CCCCcCCCCCcHHHH
Confidence            78899999999999999999999998766 4568999999999985 999999999999975   35666999999 999


Q ss_pred             HhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          118 FGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       118 lA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +|+..|+.+                 .++.++. ....+..+ +|.||++++...
T Consensus        84 ~A~~~~~~~-----------------~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  121 (156)
T 1bi7_B           84 DAAREGFLD-----------------TLVVLHRAGARLDVRDAWGRLPVDLAEEL  121 (156)
T ss_dssp             HHHHHTCHH-----------------HHHHHHHHTCCSSCCCTTCCCHHHHHHHH
T ss_pred             HHHHCCCHH-----------------HHHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence            999999842                 1221111 11234556 899999887553

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.53  E-value=2.7e-14  Score=130.31  Aligned_cols=97  Identities=11%  Similarity=-0.009  Sum_probs=45.7

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+.+. +.+|.+|+||||+|+..|+.+++++|++.+.+
T Consensus        73 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  150 (285)
T 3d9h_A           73 LSLRNLISQG-WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS  150 (285)
T ss_dssp             HHHHHHHHTT-CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCC-CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence            3444444442 222222445555555555555555555555544332 33455555555555555555555555554421


Q ss_pred             cccccccccCCCchHHHhhhcCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                          .+.+.+|+||||+|+..|+
T Consensus       151 ----~~~~~~g~t~L~~A~~~g~  169 (285)
T 3d9h_A          151 ----VQPESDLASPIHEAARRGH  169 (285)
T ss_dssp             ----SSCSCTTSCHHHHHHHHTC
T ss_pred             ----CCCCCCCCCHHHHHHHcCC
Confidence                1123335555555555554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.52  E-value=4.9e-14  Score=123.55  Aligned_cols=101  Identities=12%  Similarity=-0.028  Sum_probs=86.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|++.|+.++++.|++.+++.....+..|+||||+|+..|+.+++++|++.+.
T Consensus        22 ~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~  100 (240)
T 3eu9_A           22 YERCRELVEAG-YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA  100 (240)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             hHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCC
Confidence            47788888875 33444488999999999999999999999999988777667779999999999999999999999875


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         .++.+|.+|.||||+|+..++.
T Consensus       101 ---~~~~~~~~g~t~l~~A~~~~~~  122 (240)
T 3eu9_A          101 ---DPSLIDGEGCSCIHLAAQFGHT  122 (240)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ---CCcccCCCCCCHHHHHHHcCHH
Confidence               3455589999999999999884

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.52  E-value=3.8e-14  Score=127.32  Aligned_cols=130  Identities=13%  Similarity=0.059  Sum_probs=100.8

Q ss_pred             HHHHHHHHhcc-CCCCcc--------ccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC---
Q 047454           21 VEIVRIICKGV-IWNDPQ--------NQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR---   88 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~--------~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~---   88 (339)
                      .++++.|++.. +.+...        .+.+|.||||+|++.|+.++++.|++..+...+..|..|+||||+|+..++   
T Consensus       118 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  197 (285)
T 1wdy_A          118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD  197 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT
T ss_pred             HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccch
Confidence            46777888776 443321        167799999999999999999999998555567789999999999999999   


Q ss_pred             -hHHHHHHHcccCccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc--hhHHHhhc-CCCCcc
Q 047454           89 -AEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH--PFLREAVN-NEQTPR  164 (339)
Q Consensus        89 -~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~--~~~~~~~n-~g~tp~  164 (339)
                       .+++++|++.+.   .++.+|.+|+||||+|+..++.+                 .++.++.  ....+..| +|.||+
T Consensus       198 ~~~i~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~~g~~~~~~~~~g~t~l  257 (285)
T 1wdy_A          198 VEAITHLLLDHGA---DVNVRGERGKTPLILAVEKKHLG-----------------LVQRLLEQEHIEINDTDSDGKTAL  257 (285)
T ss_dssp             HHHHHHHHHHTTC---CSSCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHSSSCCTTCCCTTSCCHH
T ss_pred             HHHHHHHHHHcCC---CCCCcCCCCCcHHHHHHHcCCHH-----------------HHHHHHhccCCCccccCCCCCcHH
Confidence             899999999985   35556999999999999999841                 2222221  22245567 999999


Q ss_pred             hhchHH
Q 047454          165 EVFTEE  170 (339)
Q Consensus       165 dl~~~~  170 (339)
                      +++.+.
T Consensus       258 ~~A~~~  263 (285)
T 1wdy_A          258 LLAVEL  263 (285)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            987654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.52  E-value=1.1e-14  Score=125.13  Aligned_cols=100  Identities=13%  Similarity=0.031  Sum_probs=83.9

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCc------HHHHHHHHHHCCCCcccccCCCc-hHhhHHHHcCC-----
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGI------SKFVQEIIAAYKGSVYWEDENKH-TIFHVAVLHRR-----   88 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~------~~iv~~Ll~~~p~~~~~~d~~G~-t~LH~A~~~~~-----   88 (339)
                      .++++.|++.+ .|++..|.+|+||||+|+..|+      .++++.|++.+.+. +.+|.+|+ ||||+|+..+.     
T Consensus        55 ~~iv~~Ll~~G-advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~  132 (186)
T 3t8k_A           55 YKISMFLINKG-ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEM  132 (186)
T ss_dssp             HHHHHHHHHTT-CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHH
T ss_pred             HHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhH
Confidence            47899999885 4444448999999999999997      68899999988764 66899999 99999999553     


Q ss_pred             hHHHHHHHc-ccCccccccccccCCCchHHHhhhcCCC
Q 047454           89 AEVFNLIYS-STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        89 ~~iv~~Ll~-~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .+++++|++ .|+   .++.+|.+|+||||+|++.++.
T Consensus       133 ~~iv~~Ll~~~ga---d~~~~d~~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A          133 IPLYKLIFSQSGL---QLLIKDKWGLTALEFVKRCQKP  167 (186)
T ss_dssp             HHHHHHHHTSTTC---CTTCCCTTSCCHHHHHHTTTCH
T ss_pred             HHHHHHHHHhcCC---CCcccCCCCCCHHHHHHHcCCH
Confidence            469999999 775   3666799999999999999984

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.51  E-value=3.9e-14  Score=129.36  Aligned_cols=97  Identities=16%  Similarity=0.047  Sum_probs=80.2

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. +.+..    +|+||||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.+
T Consensus        44 ~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  118 (285)
T 3kea_A           44 VRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKN  118 (285)
T ss_dssp             HHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            37788888875 43332    5899999999999999999999987764 558889999999999999999999999987


Q ss_pred             CccccccccccCC-CchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIR-NNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~G-nTpLHlA~~~~~~  125 (339)
                      +   .++.+|.+| +||||+|+..|+.
T Consensus       119 a---~~~~~~~~g~~t~L~~A~~~~~~  142 (285)
T 3kea_A          119 W---RLMFYGKTGWKTSFYHAVMLNDV  142 (285)
T ss_dssp             G---GGGGCSSSGGGSHHHHHHHTTCH
T ss_pred             C---CCCccCCCCCCCHHHHHHHcCCH
Confidence            5   355568888 8999999998875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.50  E-value=4.9e-14  Score=133.58  Aligned_cols=103  Identities=13%  Similarity=0.060  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhcc-CCCCc------cccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHH
Q 047454           20 AVEIVRIICKGV-IWNDP------QNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVF   92 (339)
Q Consensus        20 a~~iv~~L~~~~-~~~~~------~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv   92 (339)
                      ..++++.|++.. +.+..      ..|.+|+||||+|++.|+.++++.|++.++..++.+|.+|+||||+|+.+|+.+++
T Consensus       250 ~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv  329 (373)
T 2fo1_E          250 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV  329 (373)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHH
Confidence            568888898887 55431      23678999999999999999999999988666778999999999999999999999


Q ss_pred             HHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           93 NLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        93 ~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ++|++.|+   .++.+|.+|+||||+|+..|+.
T Consensus       330 ~~Ll~~ga---d~~~~d~~g~t~l~~A~~~g~~  359 (373)
T 2fo1_E          330 MYLIQQGA---SVEAVDATDHTARQLAQANNHH  359 (373)
T ss_dssp             HHHHHTTC---CSSCCCSSSCCHHHHHHHTTCH
T ss_pred             HHHHHcCC---CccCCCCCCCCHHHHHHHcCCH
Confidence            99999986   3566699999999999999984

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.50  E-value=3.9e-14  Score=127.87  Aligned_cols=102  Identities=12%  Similarity=0.017  Sum_probs=82.9

Q ss_pred             HHHHHHHHhcc-CCCCccccc--------------cCCcHHHHHHHCCcHHHHHHHHH---HCCCCcccccCCCchHhhH
Q 047454           21 VEIVRIICKGV-IWNDPQNQQ--------------LLKKAFFKAATLGISKFVQEIIA---AYKGSVYWEDENKHTIFHV   82 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~--------------~g~tpLh~Aa~~G~~~iv~~Ll~---~~p~~~~~~d~~G~t~LH~   82 (339)
                      .++++.|++.. +.+..  +.              +|+||||+|++.|+.++++.|++   .+.+ ++.+|.+|+||||+
T Consensus       114 ~~~v~~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~  190 (273)
T 2pnn_A          114 MTLVTLLVENGADVQAA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHA  190 (273)
T ss_dssp             HHHHHHHHHTTCCTTCC--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHH
T ss_pred             HHHHHHHHHCCCCcCcc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHH
Confidence            47888888885 44333  43              79999999999999999999999   5544 56689999999999


Q ss_pred             HHHcCC---------hHHHHHHHcccCcccc----ccccccCCCchHHHhhhcCCC
Q 047454           83 AVLHRR---------AEVFNLIYSSTFKSNW----LGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        83 A~~~~~---------~~iv~~Ll~~~~~~~~----~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      |+..++         .+++++|++.+++...    +..+|.+|+||||+|+..|+.
T Consensus       191 A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          191 LVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            999998         7999999998753110    123599999999999999984

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.50  E-value=2.6e-14  Score=135.45  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=64.5

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCC--CCcccccCCCchHhhHHHHcC---ChHHHHHHH
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYK--GSVYWEDENKHTIFHVAVLHR---RAEVFNLIY   96 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p--~~~~~~d~~G~t~LH~A~~~~---~~~iv~~Ll   96 (339)
                      ++++.|++.. .+.+..|.+|.||||+|+..|+.++++.|++.++  ...+..|.+|+||||+|+..+   +.+++++|+
T Consensus       180 ~iv~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          180 RLVAYLMKAG-ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV  258 (373)
T ss_dssp             HHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHCC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence            5677777764 2223336677777777777777777777776541  123446677777777777776   667777777


Q ss_pred             cccCcccc-----ccccccCCCchHHHhhhcCCC
Q 047454           97 SSTFKSNW-----LGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        97 ~~~~~~~~-----~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +.+.+...     ...+|.+|+||||+|+..|+.
T Consensus       259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  292 (373)
T 2fo1_E          259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM  292 (373)
T ss_dssp             HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH
T ss_pred             HCCCCcccccccccCcccccCCCHHHHHHHhCCH
Confidence            76643211     111366777777777776664

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.50  E-value=1.8e-14  Score=131.64  Aligned_cols=97  Identities=10%  Similarity=0.031  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           20 AVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      +.++.+.|.+.   +.+..|.+|+||||+|++.|+.++++.|++.+++... .  +|+||||+|+..|+.+++++|++.+
T Consensus        12 ~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~--~g~t~L~~A~~~g~~~~v~~Ll~~g   85 (285)
T 3kea_A           12 SKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKILLFSG   85 (285)
T ss_dssp             HHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-C--TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-C--CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            34555555444   3444589999999999999999999999998765322 3  5999999999999999999999998


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ++   ++.+|.+|+||||+|+..|+.
T Consensus        86 a~---~~~~d~~g~t~L~~A~~~g~~  108 (285)
T 3kea_A           86 LD---DSQFDDKGNTALYYAVDSGNM  108 (285)
T ss_dssp             CC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             CC---CCCcCCCCCcHHHHHHHcCCH
Confidence            63   555699999999999999984

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.49  E-value=5.2e-14  Score=128.22  Aligned_cols=84  Identities=13%  Similarity=0.081  Sum_probs=75.7

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      +.+|.||||.|+..|+.++++.|++.+++. +..|.+|+||||+|+..|+.+++++|++.++   .++.+|.+|+||||+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~~~~~~g~tpL~~  112 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGA---NINQPDNEGWIPLHA  112 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCcHHHH
Confidence            678899999999999999999999998774 5689999999999999999999999999985   355669999999999


Q ss_pred             hhhcCCCC
Q 047454          119 GGKLVPSS  126 (339)
Q Consensus       119 A~~~~~~~  126 (339)
                      |+..|+.+
T Consensus       113 A~~~g~~~  120 (299)
T 1s70_B          113 AASCGYLD  120 (299)
T ss_dssp             HHHHTCHH
T ss_pred             HHHcCCHH
Confidence            99999863

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.49  E-value=7.2e-14  Score=134.49  Aligned_cols=100  Identities=11%  Similarity=0.105  Sum_probs=84.7

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|.||||+|++.|+.++++.|++.+++. +.+|.+|+||||+|+..|+.+++++|++.++
T Consensus        27 ~~~v~~Ll~~g-~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  104 (437)
T 1n11_A           27 LPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNA  104 (437)
T ss_dssp             HHHHHHHHHTT-CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC
Confidence            47888888875 333334888999999999999999999999987764 5588999999999999999999999999875


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   ++..|.+|.||||+|+..|+.
T Consensus       105 ~---~~~~~~~g~t~L~~A~~~g~~  126 (437)
T 1n11_A          105 N---PNLATTAGHTPLHIAAREGHV  126 (437)
T ss_dssp             C---TTCCCTTCCCHHHHHHHHTCH
T ss_pred             C---CCCCCCCCCcHHHHHHHcCCH
Confidence            3   455689999999999999985

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.48  E-value=8e-14  Score=137.33  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=85.2

Q ss_pred             HHHHHHHhcc-CCCCc----cccccCCcHHHHHHH---CCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHH
Q 047454           22 EIVRIICKGV-IWNDP----QNQQLLKKAFFKAAT---LGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFN   93 (339)
Q Consensus        22 ~iv~~L~~~~-~~~~~----~~d~~g~tpLh~Aa~---~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~   93 (339)
                      +.++.|++.. +.+..    ..|.+|+||||+|++   .|+.++++.|++.+.+. +.+|.+|+||||+|+.+|+.++++
T Consensus       146 ~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpLh~A~~~g~~~~v~  224 (497)
T 3lvq_E          146 LSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLK  224 (497)
T ss_dssp             HHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHHHHHTTTTCHHHHH
T ss_pred             HHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHH
Confidence            5677777776 44332    227889999999966   99999999999998764 668999999999999999999999


Q ss_pred             HHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           94 LIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        94 ~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +|++.|++   ++.+|.+|+||||+|+..|+.
T Consensus       225 ~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~  253 (497)
T 3lvq_E          225 LLLKGRAL---VGTVNEAGETALDIARKKHHK  253 (497)
T ss_dssp             HHHHTCCC---CSCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHcCCC---CCCcCCCCCCHHHHHHHcCCH
Confidence            99999863   666799999999999999985

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.48  E-value=1.2e-13  Score=128.56  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=79.9

Q ss_pred             HHHHHHHHhccCCCCcccc-ccCCcHHHHHHHCCcHHHHHHHHHHCCCC-------------------------------
Q 047454           21 VEIVRIICKGVIWNDPQNQ-QLLKKAFFKAATLGISKFVQEIIAAYKGS-------------------------------   68 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d-~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~-------------------------------   68 (339)
                      .++|+.|++.+ .|++..| ..|+||||+|++.|+.++++.|++.+.+.                               
T Consensus        38 ~~~V~~LL~~G-advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (337)
T 4g8k_A           38 VDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA  116 (337)
T ss_dssp             HHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHCC-CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccc
Confidence            36888888885 3333334 45999999999999999999999876542                               


Q ss_pred             -cccccCCCchHhhHHHHcCChHHHHHHHcccCcccc-------ccccccCCCchHHHhhhcCCC
Q 047454           69 -VYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNW-------LGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        69 -~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~-------~~~~D~~GnTpLHlA~~~~~~  125 (339)
                       ++.+|..|+||||+|+..|+.++++++++.+++...       ....|..|.||||+|+..|+.
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence             345678899999999999999999999988753211       112267899999999999884

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.48  E-value=1.5e-13  Score=123.49  Aligned_cols=100  Identities=13%  Similarity=0.066  Sum_probs=83.0

Q ss_pred             HHHHHHHHhccCCCCccc-cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGVIWNDPQN-QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~-d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. .+.+.. +..|+||||+|++.|+.++++.|++.+++. +..|.+|+||||+|+..|+.+++++|++.+
T Consensus        18 ~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   95 (285)
T 1wdy_A           18 VDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46788888875 233333 677899999999999999999999987664 457889999999999999999999999987


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .   .++.+|.+|.||||+|+..++.
T Consensus        96 ~---~~~~~~~~g~t~L~~A~~~~~~  118 (285)
T 1wdy_A           96 A---DVNECDFYGFTAFMEAAVYGKV  118 (285)
T ss_dssp             C---CTTCBCTTCCBHHHHHHHTTCH
T ss_pred             C---CCCccCcccCCHHHHHHHhCCH
Confidence            5   3555689999999999999885

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.45  E-value=2.2e-13  Score=119.34  Aligned_cols=100  Identities=12%  Similarity=0.077  Sum_probs=82.4

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. +.+.. .+..|.||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+..|+.+++++|++.+
T Consensus        55 ~~~v~~Ll~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  132 (240)
T 3eu9_A           55 IDLVKYYISKGAIVDQL-GGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKG  132 (240)
T ss_dssp             HHHHHHHHHTTCCTTCC-BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCcchhh-cCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcC
Confidence            47888888886 33221 2456899999999999999999999987664 557899999999999999999999999987


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .   .++.+|.+|+||||+|+..++.
T Consensus       133 ~---~~~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A          133 Q---DVDMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             C---CTTCCCTTSCCHHHHHHHHCCS
T ss_pred             C---CccccCCCCCcHHHHHHHhCCh
Confidence            5   3555589999999999987774

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.44  E-value=4.5e-13  Score=100.99  Aligned_cols=78  Identities=19%  Similarity=0.207  Sum_probs=67.8

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..|+.+++++|++.|+
T Consensus        15 ~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           15 LEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47788888875 334444899999999999999999999999988774 5689999999999999999999999999874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.43  E-value=3.6e-13  Score=125.25  Aligned_cols=101  Identities=11%  Similarity=0.065  Sum_probs=49.6

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCc----HHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGI----SKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~----~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      ++++.|+++.+.+++..|..|+||+|.++..++    .++++.|++.+.+. +.+|.+|+||||+|+..|+.++++.|++
T Consensus       182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            455555544333333335555555555443322    23445555544432 3355555555555555555555555554


Q ss_pred             ccCccccccccccCCCchHHHhhhcCCC
Q 047454           98 STFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        98 ~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ...  ..++.+|.+|+||||+|+..|+.
T Consensus       261 ~~~--~~vn~~d~~G~TpL~~A~~~g~~  286 (337)
T 4g8k_A          261 QEH--IEINDTDSDGKTALLLAVELKLK  286 (337)
T ss_dssp             STT--CCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             hcC--CcccCcCCCCCCHHHHHHHcCCH
Confidence            321  12333455555555555555553

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.43  E-value=1.2e-13  Score=127.57  Aligned_cols=95  Identities=15%  Similarity=0.017  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           20 AVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        20 a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      ..++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..++.+++++|++.+
T Consensus       205 ~~~iv~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          205 SLPLVDFIIQNG-GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             THHHHHHHHHHS-SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            357889998885 334444899999999999999999999999987774 568999999999999999999999999987


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +         ..|+||||+|+..|+.
T Consensus       283 a---------~~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          283 A---------GTFAFPLHVDYSWVIS  299 (301)
T ss_dssp             H---------HTTSSCCC--------
T ss_pred             C---------CCCCChhHHHHhcCCc
Confidence            3         2699999999999873

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.38  E-value=5.7e-13  Score=104.23  Aligned_cols=90  Identities=13%  Similarity=0.049  Sum_probs=74.7

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||+|+..++.+++++|++.|+
T Consensus        22 ~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga   99 (115)
T 2l6b_A           22 AEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGA   99 (115)
T ss_dssp             HHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSS
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            46788888775 334444899999999999999999999999987764 5689999999999999999999999999986


Q ss_pred             ccccccccccCCCch
Q 047454          101 KSNWLGSNDNIRNNI  115 (339)
Q Consensus       101 ~~~~~~~~D~~GnTp  115 (339)
                      +   ++.+|.+|.||
T Consensus       100 ~---~n~~~~~~~~~  111 (115)
T 2l6b_A          100 D---VNARSWGSSHH  111 (115)
T ss_dssp             S---HHHHSCCCC--
T ss_pred             C---CCcCCcccccc
Confidence            3   55568888887

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.32  E-value=2.4e-12  Score=117.34  Aligned_cols=110  Identities=14%  Similarity=0.053  Sum_probs=87.7

Q ss_pred             cCCcHHHHHHHCCcHHHHHHHHHHCCCCc-----ccccCCCchHhhHHHHc---CChHHHHHHHcccCccccccccccCC
Q 047454           41 LLKKAFFKAATLGISKFVQEIIAAYKGSV-----YWEDENKHTIFHVAVLH---RRAEVFNLIYSSTFKSNWLGSNDNIR  112 (339)
Q Consensus        41 ~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~-----~~~d~~G~t~LH~A~~~---~~~~iv~~Ll~~~~~~~~~~~~D~~G  112 (339)
                      ...++||.|++.|+.+.++.+++.+++..     +..|..|+||||+|+..   ++.+++++|++.++   .++.+|.+|
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga---~in~~d~~g  205 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG---NLDKQTGKG  205 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS---CTTCCCTTC
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC---CccccCCCC
Confidence            44689999999999999999999988753     33488999999999999   89999999999986   366679999


Q ss_pred             CchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc-chhHHHhhc-CCCCcchhchHH
Q 047454          113 NNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV-HPFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       113 nTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +||||+|+..|+.+                 .++.++ .....+.+| +|.||++++.+.
T Consensus       206 ~TpLh~A~~~g~~~-----------------~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  248 (278)
T 1dcq_A          206 STALHYCCLTDNAE-----------------CLKLLLRGKASIEIANESGETPLDIAKRL  248 (278)
T ss_dssp             CCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHH-----------------HHHHHHHcCCCCCCccCCCCCHHHHHHHc
Confidence            99999999999842                 222222 112345667 999999997654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.31  E-value=5.5e-13  Score=126.88  Aligned_cols=100  Identities=13%  Similarity=0.023  Sum_probs=76.5

Q ss_pred             HHHHHHHhcc--CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCc--ccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           22 EIVRIICKGV--IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSV--YWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        22 ~iv~~L~~~~--~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~--~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      ++++.|++..  ....+..+.+|.||||+||++|+.+++++|++.+++..  +..+.+ +||||+|+.+|+.+++++|++
T Consensus       106 e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~  184 (376)
T 2aja_A          106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE  184 (376)
T ss_dssp             HHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH
Confidence            6788888775  11222336678899999999999999999999887521  212222 999999999999999999999


Q ss_pred             ccCccccccc--cccCCCchHHHhh-hcCCC
Q 047454           98 STFKSNWLGS--NDNIRNNILHFGG-KLVPS  125 (339)
Q Consensus        98 ~~~~~~~~~~--~D~~GnTpLHlA~-~~~~~  125 (339)
                      .+++   ++.  .|.+|+||||+|+ ..|+.
T Consensus       185 ~ga~---~~~~~~d~~g~TpL~~Aa~~~G~~  212 (376)
T 2aja_A          185 LAPT---EATAMIQAENYYAFRWAAVGRGHH  212 (376)
T ss_dssp             SCGG---GHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             cCCc---cchhccCCCCCCHHHHHHHHCCCH
Confidence            9753   344  5888999999999 99985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.30  E-value=2.5e-12  Score=121.98  Aligned_cols=109  Identities=12%  Similarity=0.071  Sum_probs=86.6

Q ss_pred             cCCcHHHHHHHC-CcHHHHHHHHHHCCCCccccc--CCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHH
Q 047454           41 LLKKAFFKAATL-GISKFVQEIIAAYKGSVYWED--ENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILH  117 (339)
Q Consensus        41 ~g~tpLh~Aa~~-G~~~iv~~Ll~~~p~~~~~~d--~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLH  117 (339)
                      .+.||||.|+.. |+.++++.|++.+.+. +..|  .+|+||||+|+..|+.+++++|++.++   .++.+|.+|+||||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga---dvn~~d~~G~TpLh  273 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGA---NVNQADSAGRGPLH  273 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCC---CCCCCCCCCCCHHH
Confidence            456899999999 9999999999988775 4466  899999999999999999999999986   36666999999999


Q ss_pred             HhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          118 FGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       118 lA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      +|+..++.+                 .++.++. ....+..| +|.||++++.+.
T Consensus       274 ~A~~~g~~~-----------------~v~~LL~~Gad~~~~d~~G~TpL~~A~~~  311 (368)
T 3jue_A          274 HATILGHTG-----------------LACLFLKRGADLGARDSEGRDPLTIAMET  311 (368)
T ss_dssp             HHHHHTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHcCcHH-----------------HHHHHHHCcCCCCCcCCCCCCHHHHHHHC
Confidence            999999842                 1222111 12245567 899999987653

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.24  E-value=8.3e-12  Score=122.90  Aligned_cols=107  Identities=16%  Similarity=0.123  Sum_probs=83.1

Q ss_pred             CcHHHHHHHCCcHHHHHHHHHHCCCCccc-----ccCCCchHhhHHHH---cCChHHHHHHHcccCccccccccccCCCc
Q 047454           43 KKAFFKAATLGISKFVQEIIAAYKGSVYW-----EDENKHTIFHVAVL---HRRAEVFNLIYSSTFKSNWLGSNDNIRNN  114 (339)
Q Consensus        43 ~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~-----~d~~G~t~LH~A~~---~~~~~iv~~Ll~~~~~~~~~~~~D~~GnT  114 (339)
                      .+.||.|+..|+.+.++.|++.+++....     .|..|+||||+|+.   .|+.+++++|++.|+   .++.+|.+|+|
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga---~vn~~d~~g~T  209 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG---HLDAKAADGNT  209 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC---CTTCCCSSSCC
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCC---CCCccCCCCCc
Confidence            37899999999999999999998775321     27899999999976   899999999999986   46667999999


Q ss_pred             hHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchH
Q 047454          115 ILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       115 pLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~  169 (339)
                      |||+|+..|+.+                 .++.++. ....+..| +|.||++++..
T Consensus       210 pLh~A~~~g~~~-----------------~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  249 (497)
T 3lvq_E          210 ALHYAALYNQPD-----------------CLKLLLKGRALVGTVNEAGETALDIARK  249 (497)
T ss_dssp             HHHHHTTTTCHH-----------------HHHHHHHTCCCCSCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHH-----------------HHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            999999999842                 1222111 12234556 88888887654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.19  E-value=6.8e-11  Score=91.95  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHH
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLI   95 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~L   95 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+.+ .+.+|..|+||||+|+..|+.+++++|
T Consensus        37 ~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           37 DDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            36778888775 34444488999999999999999999999998766 456899999999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.15  E-value=3.4e-12  Score=121.39  Aligned_cols=95  Identities=11%  Similarity=-0.000  Sum_probs=76.7

Q ss_pred             HHHHHHHHhcc-CCCCccc-cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcc-cccCCCchHhhHHH-HcCChHHHHHHH
Q 047454           21 VEIVRIICKGV-IWNDPQN-QQLLKKAFFKAATLGISKFVQEIIAAYKGSVY-WEDENKHTIFHVAV-LHRRAEVFNLIY   96 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~-d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~-~~d~~G~t~LH~A~-~~~~~~iv~~Ll   96 (339)
                      .++++.|++.. +.+.... +.+ +||||+||++|+.++++.|++.+++... ..|.+|+||||+|+ .+|+.+++++|+
T Consensus       141 ~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll  219 (376)
T 2aja_A          141 LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL  219 (376)
T ss_dssp             HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHT
T ss_pred             HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHH
Confidence            37788888875 3211122 233 8999999999999999999999876432 27888999999999 999999999999


Q ss_pred             cccCccccccccccCCCchHHHhhhcCCCC
Q 047454           97 SSTFKSNWLGSNDNIRNNILHFGGKLVPSS  126 (339)
Q Consensus        97 ~~~~~~~~~~~~D~~GnTpLHlA~~~~~~~  126 (339)
                      +.++          +|+||||.|+..|+.+
T Consensus       220 ~~ga----------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          220 DCPV----------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             TSHH----------HHHHHHHCTTTTTTTT
T ss_pred             hCCC----------ccchHHHHHHHCCCHH
Confidence            9752          3899999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.68
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.67
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.64
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.63
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.59
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.58
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.58
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.55
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.55
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.54
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.54
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.52
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.51
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.51
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.47
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.46
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.46
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.44
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.44
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.44
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.43
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.42
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.41
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.4
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.39
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.36
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.34
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.32
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.3
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.28
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.26
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.17

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.7e-17  Score=130.13  Aligned_cols=95  Identities=13%  Similarity=-0.006  Sum_probs=82.0

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.|++.. .|.+..|.+|+||||+|+..|+.++++.+++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++
T Consensus        16 ~~v~~Ll~~g-~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad   93 (118)
T d1myoa_          16 DEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD   93 (118)
T ss_dssp             HHHHHHHTTT-CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCC
T ss_pred             HHHHHHHHhh-hcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCchhhhhhhhccccc
Confidence            6777788775 444555899999999999999999999999988774 56899999999999999999999999999863


Q ss_pred             cccccccccCCCchHHHhhh
Q 047454          102 SNWLGSNDNIRNNILHFGGK  121 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~  121 (339)
                         ++.+|.+|+||||+|..
T Consensus        94 ---~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          94 ---KTVKGPDGLTALEATDN  110 (118)
T ss_dssp             ---SSSSSSSTCCCCCTCSS
T ss_pred             ---ceeeCCCCCCHHHHHhH
Confidence               56669999999999843

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.6e-17  Score=129.06  Aligned_cols=106  Identities=17%  Similarity=0.032  Sum_probs=86.1

Q ss_pred             CcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhc
Q 047454           43 KKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKL  122 (339)
Q Consensus        43 ~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~  122 (339)
                      .|||++|+++|+.++++.|++.+.+ ++.+|.+|+||||+|+.+|+.++++++++.+.   .++.+|.+|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~---din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA---DINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC---TTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccc---eeeecccccccchhhhhhc
Confidence            3899999999999999999998776 45689999999999999999999999999985   3566699999999999999


Q ss_pred             CCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchH
Q 047454          123 VPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       123 ~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~  169 (339)
                      |+.+.                 ++.++. ....+.+| +|.||++++..
T Consensus        79 ~~~~~-----------------v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          79 GHVSC-----------------VKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TCCHH-----------------HHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             Cchhh-----------------hhhhhcccccceeeCCCCCCHHHHHhH
Confidence            98521                 222221 12245667 99999998743

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.9e-16  Score=135.24  Aligned_cols=134  Identities=16%  Similarity=0.054  Sum_probs=102.7

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..|.+|+||||+|+..|+.++++.|++.+.+. +.+|..|.||||+|+..++.+++++|.+.+.
T Consensus        83 ~~i~~~Ll~~~-~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~  160 (223)
T d1uoha_          83 DEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKA  160 (223)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchhHHHhccC-ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccc
Confidence            36777777775 334445889999999999999999999999887664 5688999999999999999999999998864


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc-chhHHHhhc-CCCCcchhchHHHHHHHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV-HPFLREAVN-NEQTPREVFTEEHKELVK  176 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n-~g~tp~dl~~~~~~~l~~  176 (339)
                         .++.+|.+|+||||+|+..|+.+                 .++.++ .....+.+| +|+||++++...+.+..+
T Consensus       161 ---~i~~~d~~g~TpL~~Aa~~g~~~-----------------~v~~LL~~Gad~~~~d~~g~tpl~~A~~~~~~i~~  218 (223)
T d1uoha_         161 ---STNIQDTEGNTPLHLACDEERVE-----------------EAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILK  218 (223)
T ss_dssp             ---CSCCCCTTCCCHHHHHHHTTCHH-----------------HHHHHHHTTCCSCCCCTTSCCHHHHCCTTHHHHHH
T ss_pred             ---eeeeccCCCCceeccccccCcHH-----------------HHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHh
Confidence               35556999999999999998831                 222222 112245677 999999998766665544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=9.4e-16  Score=125.91  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             cccCCcHHHHHHH---CCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCch
Q 047454           39 QQLLKKAFFKAAT---LGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNI  115 (339)
Q Consensus        39 d~~g~tpLh~Aa~---~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTp  115 (339)
                      +..|+||||+|++   .|+.++++.|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.|+   .++.+|.+|.||
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ga---d~~~~d~~g~tp  117 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKA---SIEIANESGETP  117 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCH
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccccccccccccccccccccCc---cccccCCCCCCH
Confidence            7789999999997   47889999999998774 6699999999999999999999999999986   356669999999


Q ss_pred             HHHhhhcCCC
Q 047454          116 LHFGGKLVPS  125 (339)
Q Consensus       116 LHlA~~~~~~  125 (339)
                      ||+|++.|+.
T Consensus       118 L~~A~~~~~~  127 (154)
T d1dcqa1         118 LDIAKRLKHE  127 (154)
T ss_dssp             HHHHHHTTCH
T ss_pred             HHHHHHcCCH
Confidence            9999999984

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.4e-16  Score=122.69  Aligned_cols=99  Identities=13%  Similarity=0.004  Sum_probs=81.7

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.|+++. .|++..|.+|+||||+|+..|+.++++.|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.|++
T Consensus        15 ~~v~~Ll~~g-~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   92 (130)
T d1ycsb1          15 DLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA   92 (130)
T ss_dssp             HHHHHHTSTT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcC-CCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHHHHHHHHHHcCCC
Confidence            6788888875 344445899999999999999999999999997764 56899999999999999999999999999863


Q ss_pred             ccccccc-ccCCCchHHHhh--hcCCC
Q 047454          102 SNWLGSN-DNIRNNILHFGG--KLVPS  125 (339)
Q Consensus       102 ~~~~~~~-D~~GnTpLHlA~--~~~~~  125 (339)
                         ++.. +.+|+||++++.  ..|+.
T Consensus        93 ---v~~~~~~~~~~~~~~~~a~~~g~~  116 (130)
T d1ycsb1          93 ---VFAMTYSDMQTAADKCEEMEEGYT  116 (130)
T ss_dssp             ---TTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             ---cccccCCCCCCHHHHHHHHHcChH
Confidence               4545 457888887764  45554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.8e-15  Score=137.18  Aligned_cols=66  Identities=8%  Similarity=0.056  Sum_probs=52.7

Q ss_pred             HHHHHHHhcc---CCCCccc-cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCC
Q 047454           22 EIVRIICKGV---IWNDPQN-QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRR   88 (339)
Q Consensus        22 ~iv~~L~~~~---~~~~~~~-d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~   88 (339)
                      .++..+.+..   +.+.+.. |.+|+||||+||+.|+.++++.|++.+.+. +.+|..|+||||.|+..++
T Consensus        83 ~~~~~~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          83 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             HHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSH
T ss_pred             HHHHHHHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhccc
Confidence            4444444443   4555544 899999999999999999999999998765 5689999999999998664

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.6e-16  Score=121.41  Aligned_cols=99  Identities=12%  Similarity=0.071  Sum_probs=82.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCc-hHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKH-TIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~-t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.+ .|++..|.+|+||+|.| ..|+.++++.|++.+++. +..|..|. ||||+|+.+|+.+++++|++.|
T Consensus        16 ~~~v~~Ll~~g-ad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g   92 (125)
T d1bi7b_          16 VEEVRALLEAG-ANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG   92 (125)
T ss_dssp             HHHHHHHHTTT-CCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcC-Ccccccccccccccccc-cccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            36778888875 44455589999999976 579999999999998775 44666665 6999999999999999999998


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      .+   ++.+|.+|+||||+|++.|+.
T Consensus        93 a~---~~~~d~~G~T~l~~A~~~g~~  115 (125)
T d1bi7b_          93 AR---LDVRDAWGRLPVDLAEELGHR  115 (125)
T ss_dssp             CC---SSCCCTTCCCHHHHHHHHTCH
T ss_pred             cc---cccccCCCCCHHHHHHHcCCH
Confidence            53   556699999999999999984

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.6e-15  Score=122.70  Aligned_cols=127  Identities=13%  Similarity=0.056  Sum_probs=99.3

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++|+.+++....+++..|..|+||||+|+ .|+.+++++|++.+++. +..+.+|.+|++.++..++.++++.+++.+. 
T Consensus        16 ~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-   92 (156)
T d1bd8a_          16 QEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-   92 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccc-
Confidence            56777777655556666999999999886 58899999999987774 5578899999999999999999999999875 


Q ss_pred             cccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcchhHHHhhc-CCCCcchhchHH
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVHPFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n-~g~tp~dl~~~~  170 (339)
                        .++.+|.+|+||||+|+..|+.+                 .++.++.....+.+| +|+||++++.+.
T Consensus        93 --~~n~~~~~~~t~L~~A~~~~~~~-----------------i~~~L~~~~~~~~~d~~G~TpL~~A~~~  143 (156)
T d1bd8a_          93 --DVNVPDGTGALPIHLAVQEGHTA-----------------VVSFLAAESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             --CSCCCCTTSCCHHHHHHHHTCHH-----------------HHHHHHTTSCTTCCCTTSCCHHHHHHHS
T ss_pred             --ccccccCCCCeeecccccccccc-----------------ccccccccccccccCCCCCCHHHHHHHc
Confidence              35556999999999999999841                 122222222345567 999999997654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-15  Score=120.67  Aligned_cols=78  Identities=17%  Similarity=0.139  Sum_probs=70.7

Q ss_pred             cHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcC
Q 047454           44 KAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLV  123 (339)
Q Consensus        44 tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~  123 (339)
                      ++||.||..|+.++++.|++.+.+ ++.+|.+|+||||+|+..++.++++++++.+.   .++.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~---~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGV---NVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC---CTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-cccccccccccccccccccccccccccccccc---ccccccccCcccccccchhh
Confidence            689999999999999999998877 46689999999999999999999999999875   35556999999999999999


Q ss_pred             CC
Q 047454          124 PS  125 (339)
Q Consensus       124 ~~  125 (339)
                      +.
T Consensus        79 ~~   80 (130)
T d1ycsb1          79 NV   80 (130)
T ss_dssp             CH
T ss_pred             HH
Confidence            84

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.7e-15  Score=124.75  Aligned_cols=15  Identities=27%  Similarity=0.248  Sum_probs=10.0

Q ss_pred             Hhhc-CCCCcchhchH
Q 047454          155 EAVN-NEQTPREVFTE  169 (339)
Q Consensus       155 ~~~n-~g~tp~dl~~~  169 (339)
                      +.+| +|.||++++.+
T Consensus       204 n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         204 SLKNCHNDTPLMVARS  219 (228)
T ss_dssp             TCCCTTSCCTTTTCSS
T ss_pred             CCCCCCCCCHHHHHHh
Confidence            4456 77788777654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=4.3e-15  Score=130.17  Aligned_cols=87  Identities=14%  Similarity=-0.085  Sum_probs=78.7

Q ss_pred             ccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCch
Q 047454           36 PQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNI  115 (339)
Q Consensus        36 ~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTp  115 (339)
                      +..|.+|.||||+|+++|+.++++.|++.+++.....+..|+||||+|++.++.+++++|++.++   .++.+|.+|+||
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga---din~~d~~g~t~  228 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA---DPTARMYGGRTP  228 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCH
T ss_pred             ccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCC---CCCCCCCCCCCH
Confidence            34488999999999999999999999999888777778899999999999999999999999875   356669999999


Q ss_pred             HHHhhhcCCC
Q 047454          116 LHFGGKLVPS  125 (339)
Q Consensus       116 LHlA~~~~~~  125 (339)
                      ||+|+..++.
T Consensus       229 L~~A~~~~~~  238 (255)
T d1oy3d_         229 LGSALLRPNP  238 (255)
T ss_dssp             HHHHHTSSCH
T ss_pred             HHHHHHCCCH
Confidence            9999999984

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=2.4e-15  Score=127.78  Aligned_cols=129  Identities=15%  Similarity=0.141  Sum_probs=95.8

Q ss_pred             HHHHHHHHhccCCCCcc-ccccCCcHHHHHHHCCcHHHHHHHHHHCCCC-------------------------------
Q 047454           21 VEIVRIICKGVIWNDPQ-NQQLLKKAFFKAATLGISKFVQEIIAAYKGS-------------------------------   68 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~-~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~-------------------------------   68 (339)
                      .++|+.|++++ .|.+. .|.+|.||||+||+.|+.++++.|++.+++.                               
T Consensus         2 ~~~v~~Ll~~g-~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQG-AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCC-CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            47899999986 23443 3889999999999999999999999964321                               


Q ss_pred             -----------------------------------cccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCC
Q 047454           69 -----------------------------------VYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRN  113 (339)
Q Consensus        69 -----------------------------------~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~Gn  113 (339)
                                                         ++.+|..|+||||.++.+++.++++.+++.+.   .++.+|.+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~---~~~~~d~~g~  157 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA---NRDAQDDKDE  157 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccc---cccccccccc
Confidence                                               24567778888888888888888888888764   3455588899


Q ss_pred             chHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          114 NILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       114 TpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      ||||.|+..|+.+                 .++.++. ....+..| +|+||++++.+.
T Consensus       158 TpL~~A~~~g~~~-----------------~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         158 TPLFLAAREGSYE-----------------ASKALLDNFANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             CHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccchhccccHHH-----------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            9999999988842                 2222221 11245667 999999987664

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=4.7e-15  Score=129.94  Aligned_cols=84  Identities=12%  Similarity=0.113  Sum_probs=75.2

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCC--CCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYK--GSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNIL  116 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p--~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpL  116 (339)
                      +++|+||||+||++|+.++++.|++.++  ...+..|.+|+||||+|+.+|+.+++++|++.|+   .++.+|.+|+|||
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga---~i~~~d~~g~tpL   82 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA---GVLVAERGGHTAL   82 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CSSCCCTTSCCHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccc---cccccccccchhh
Confidence            7899999999999999999999998864  4456678999999999999999999999999986   3556699999999


Q ss_pred             HHhhhcCCC
Q 047454          117 HFGGKLVPS  125 (339)
Q Consensus       117 HlA~~~~~~  125 (339)
                      |+|+..++.
T Consensus        83 ~~A~~~~~~   91 (255)
T d1oy3d_          83 HLACRVRAH   91 (255)
T ss_dssp             HHHTTTTCH
T ss_pred             hhhhccCch
Confidence            999998874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.54  E-value=1.6e-14  Score=128.96  Aligned_cols=76  Identities=12%  Similarity=-0.038  Sum_probs=54.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcc
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS   98 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~   98 (339)
                      .++|+.|++.+ .|++..|.+|+||||+|+.+|+.++++.|++.+++. ...+..+.+|||.|+..++.++++.+++.
T Consensus        53 ~~~v~~Ll~~G-advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~  128 (291)
T d1s70b_          53 TEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ  128 (291)
T ss_dssp             HHHHHHHHHHC-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHCC-CCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccccchhhccccc
Confidence            36777888875 444455999999999999999999999999887653 22455566666666666666666665543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.2e-14  Score=116.01  Aligned_cols=99  Identities=18%  Similarity=0.100  Sum_probs=80.6

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCC--------------------------------
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKG--------------------------------   67 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~--------------------------------   67 (339)
                      .++++.|++.. +.+   .|..|+||||+|+..++.+.++.++...+.                                
T Consensus        15 ~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (153)
T d1awcb_          15 DDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA   91 (153)
T ss_dssp             HHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCcc---cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCC
Confidence            36777778876 433   378899999999999999988887764321                                


Q ss_pred             CcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           68 SVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        68 ~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ....+|.+|+||||+|+..|+.+++++|++.|+   .++.+|.+|+||||+|+..|+.
T Consensus        92 ~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga---d~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGA---DVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccCchHHHhhhhcchhheeeecccccc---CCcccCCCCCCHHHHHHHcCCH
Confidence            134578899999999999999999999999986   3555699999999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.51  E-value=9.2e-16  Score=142.16  Aligned_cols=113  Identities=10%  Similarity=-0.088  Sum_probs=81.7

Q ss_pred             HhhhhhHHHHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCccc-ccCCCchHhhHHHHcCChH
Q 047454           12 KEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYW-EDENKHTIFHVAVLHRRAE   90 (339)
Q Consensus        12 ~~~~~~~~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~-~d~~G~t~LH~A~~~~~~~   90 (339)
                      +...+|.+.+++++.|.+. +.+.+..|.+|+||||+||++||.+++++|++.+++.... .+.+|+||||+|+.+|+.+
T Consensus        97 Aa~~g~~~~~~~~~~L~~~-~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~  175 (346)
T d2ajaa1          97 AAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH  175 (346)
T ss_dssp             HHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHH
T ss_pred             HHHhCCHHHHHHHHHHHhC-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHH
Confidence            3444444555555555555 4455555889999999999999999999999998875332 2356999999999999999


Q ss_pred             HHHHHHcccCccccccccccCCCchHHHhhhcCCC
Q 047454           91 VFNLIYSSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        91 iv~~Ll~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      ++++|++.++.....+..+.+|.||+|.|+..|+.
T Consensus       176 iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~  210 (346)
T d2ajaa1         176 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH  210 (346)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHHHHcCCcccccccccCCCcchhhHHhhcCHH
Confidence            99999998753322333366778888889999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.7e-14  Score=124.25  Aligned_cols=98  Identities=14%  Similarity=0.143  Sum_probs=79.3

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcc-c
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSS-T   99 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~-~   99 (339)
                      .++++.+++.. .+....|.+|+||||+|+..|+.++++.|++.++..++.+|.+|+||||+|+.+|+.+++++|++. |
T Consensus       118 ~~~~~~l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g  196 (229)
T d1ixva_         118 FEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG  196 (229)
T ss_dssp             HHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             hhhhhhhhhhc-ccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcC
Confidence            35666666664 222333788999999999999999999999988777788899999999999999999999999964 5


Q ss_pred             CccccccccccCCCchHHHhhhc
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKL  122 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~  122 (339)
                      +   .++.+|.+|+||||+|+..
T Consensus       197 a---d~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         197 A---EYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             C---CSCCCCTTSCCTGGGCSCH
T ss_pred             C---CCCCcCCCCCCHHHHHhhH
Confidence            4   3555699999999998753

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-14  Score=120.75  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=35.3

Q ss_pred             HhhhhhHHHH-HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHH
Q 047454           12 KEKVRNMQAV-EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAA   64 (339)
Q Consensus        12 ~~~~~~~~a~-~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~   64 (339)
                      +...+|.+.+ .+++.+.+. +.+.+..|.+|+||||+|+..|+.++++.|++.
T Consensus        10 A~~~g~~~~v~~Ll~~~~~~-g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~   62 (228)
T d1k1aa_          10 AVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA   62 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHC-CCCCCccCCCCCccceehhcccccccccccccc
Confidence            4444455444 233444444 344455588999999999999999999999974

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3e-14  Score=115.19  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=82.1

Q ss_pred             CcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc---------------------
Q 047454           43 KKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK---------------------  101 (339)
Q Consensus        43 ~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~---------------------  101 (339)
                      .||||.||+.|+.++++.||+.+++..  .|..|+||||+|+..++.+.++.+......                     
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            499999999999999999999988642  799999999999999999988888764321                     


Q ss_pred             ---------cccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          102 ---------SNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       102 ---------~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                               ......+|.+|+||||+|+..|+.+                 .++.++. ....+.+| +|.||++++.++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~-----------------iv~~ll~~gad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE-----------------VVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhh-----------------eeeeccccccCCcccCCCCCCHHHHHHHc
Confidence                     1223344889999999999998842                 1111111 11234567 999999998664


Q ss_pred             H
Q 047454          171 H  171 (339)
Q Consensus       171 ~  171 (339)
                      .
T Consensus       144 g  144 (153)
T d1awcb_         144 G  144 (153)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=111.93  Aligned_cols=98  Identities=14%  Similarity=0.013  Sum_probs=83.5

Q ss_pred             HHHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHccc
Q 047454           21 VEIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSST   99 (339)
Q Consensus        21 ~~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~   99 (339)
                      .++++.|++.. +.+.  .+.+|.+|++.|++.++.++++.+++.+++. +.+|.+|+||||+|+..|+.+++++|++ +
T Consensus        48 ~~~v~~Ll~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~  123 (156)
T d1bd8a_          48 TAIALELLKQGASPNV--QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-E  123 (156)
T ss_dssp             HHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-T
T ss_pred             cccccccccccccccc--ccccccccccccccccccccccccccccccc-ccccCCCCeeeccccccccccccccccc-c
Confidence            46778888775 5444  4788999999999999999999999998774 5589999999999999999999999885 4


Q ss_pred             CccccccccccCCCchHHHhhhcCCC
Q 047454          100 FKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       100 ~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +   .++.+|.+|+||||+|+..|+.
T Consensus       124 ~---~~~~~d~~G~TpL~~A~~~g~~  146 (156)
T d1bd8a_         124 S---DLHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             S---CTTCCCTTSCCHHHHHHHSCCH
T ss_pred             c---cccccCCCCCCHHHHHHHcCCH
Confidence            3   3566699999999999999994

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.5e-13  Score=118.06  Aligned_cols=128  Identities=13%  Similarity=-0.015  Sum_probs=96.2

Q ss_pred             HHHHHHHhcc-CCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           22 EIVRIICKGV-IWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        22 ~iv~~L~~~~-~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      ++++.+.... ..+....+..+.||++.++..++.++++.|++.+.+ ....|.+|+||||+|+..|+.+++++|++.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  162 (229)
T d1ixva_          84 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK  162 (229)
T ss_dssp             HHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccccccccccccccc
Confidence            4445544444 334444477888999999999999999998887655 45588999999999999999999999999863


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc--hhHHHhhc-CCCCcchhchH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH--PFLREAVN-NEQTPREVFTE  169 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~--~~~~~~~n-~g~tp~dl~~~  169 (339)
                        ..++.+|.+|+||||+|+..++.                 +.++.++.  +...+.+| +|+||++++.+
T Consensus       163 --~~in~~d~~g~TpLh~A~~~~~~-----------------~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         163 --SAVNWQDKQGWTPLFHALAEGHG-----------------DAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             --CCSCCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             --ccccccccccCCchhhhcccccH-----------------HHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence              34566699999999999999984                 12232221  12345677 99999999864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3e-14  Score=112.32  Aligned_cols=108  Identities=13%  Similarity=0.010  Sum_probs=82.7

Q ss_pred             cCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCC-CchHHHh
Q 047454           41 LLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIR-NNILHFG  119 (339)
Q Consensus        41 ~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~G-nTpLHlA  119 (339)
                      .+.++||+||++|+.++++.|++.+.+. +.+|.+|+||||.|+ .|+.+++++|++.+++   ++.+|.+| +||||+|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~---~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLTRPVHDA   76 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCCCHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccc---cccccccccccccccc
Confidence            3579999999999999999999987664 568999999999775 7999999999999863   55566665 4799999


Q ss_pred             hhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          120 GKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       120 ~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                      ++.|+.+                 .++.++. ....+.+| +|+||.+++.+.
T Consensus        77 ~~~g~~~-----------------~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~  112 (125)
T d1bi7b_          77 AREGFLD-----------------TLVVLHRAGARLDVRDAWGRLPVDLAEEL  112 (125)
T ss_dssp             HHHTCHH-----------------HHHHHHHHTCCSSCCCTTCCCHHHHHHHH
T ss_pred             ccccccc-----------------ccccccccccccccccCCCCCHHHHHHHc
Confidence            9999842                 1221111 11234567 999999987553

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=1.9e-13  Score=115.84  Aligned_cols=97  Identities=11%  Similarity=0.006  Sum_probs=81.2

Q ss_pred             HHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccc
Q 047454           24 VRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSN  103 (339)
Q Consensus        24 v~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~  103 (339)
                      .+.+.+. +.+.+..+..|+||||.|+..|..++++.+++.+.+ .+..|.+|.||||+|+.+|+.+++++|++.|++  
T Consensus       106 ~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad--  181 (209)
T d1ot8a_         106 VEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFAN--  181 (209)
T ss_dssp             HHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             hhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHCCCC--
Confidence            3334443 333444488999999999999999999999998766 466899999999999999999999999999863  


Q ss_pred             cccccccCCCchHHHhhhcCCC
Q 047454          104 WLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       104 ~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                       ++.+|.+|+||||+|++.|+.
T Consensus       182 -~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         182 -REITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCH
T ss_pred             -CCCcCCCCCCHHHHHHHcCCH
Confidence             555699999999999999994

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-13  Score=118.19  Aligned_cols=98  Identities=18%  Similarity=0.146  Sum_probs=83.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+++..|.+|.||||+|+..|+.++++.|++...+ ++..|.+|+||||+|+..|+.+++++|++.|+
T Consensus       116 ~e~~~~Ll~~g-~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga  193 (223)
T d1uoha_         116 HEIAVMLLEGG-ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGA  193 (223)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCC-CCCCCcCCCCCccchhhhhcCCcchhhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHHCCC
Confidence            36888888775 44444589999999999999999999999987766 56689999999999999999999999999986


Q ss_pred             ccccccccccCCCchHHHhhhcCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVP  124 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~  124 (339)
                      +   ++.+|.+|+||||+|. .|+
T Consensus       194 d---~~~~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         194 S---IYIENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             C---SCCCCTTSCCHHHHCC-TTH
T ss_pred             C---CCCCCCCCCCHHHHHH-CCC
Confidence            3   5566999999999984 454

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-13  Score=127.26  Aligned_cols=99  Identities=11%  Similarity=0.057  Sum_probs=82.3

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.|++.. .+.+..+..+.||||.|+..|+.++++.+++.+.+ ++.+|.+|+||||+|+++|+.+++++|++.|++
T Consensus       278 ~i~~~Ll~~g-~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd  355 (408)
T d1n11a_         278 PVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS  355 (408)
T ss_dssp             HHHHHHHHHT-CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCC-CccccccccccccchhhcccCcceeeeeecccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            5666677654 33333477788999999999999999998887655 466899999999999999999999999999874


Q ss_pred             cccccccccCCCchHHHhhhcCCC
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                         ++.+|.+|+||||+|++.|+.
T Consensus       356 ---~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         356 ---PNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             ---SCCCCSSSCCHHHHHHHTTCH
T ss_pred             ---CCCCCCCCCCHHHHHHHcCCH
Confidence               666799999999999999994

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.43  E-value=1.9e-14  Score=127.14  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=71.3

Q ss_pred             ccCCcHHHHHHHCCcHHHHHHHHHHCC-------CCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCC
Q 047454           40 QLLKKAFFKAATLGISKFVQEIIAAYK-------GSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIR  112 (339)
Q Consensus        40 ~~g~tpLh~Aa~~G~~~iv~~Ll~~~p-------~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~G  112 (339)
                      .+|+||||+||.+|+.++++.|+...+       ..++.+|.+|+||||+|+.+|+.+++++|++.|++   ++.+|.+|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad---~n~~~~~g  107 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSE  107 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc---cccccccc
Confidence            469999999999999999988865421       23456899999999999999999999999999863   56669999


Q ss_pred             CchHHHhhhcCCC
Q 047454          113 NNILHFGGKLVPS  125 (339)
Q Consensus       113 nTpLHlA~~~~~~  125 (339)
                      +||||.|...++.
T Consensus       108 ~t~l~~a~~~~~~  120 (277)
T d2fo1e1         108 RSALHQAAANRDF  120 (277)
T ss_dssp             CCHHHHHHHTTCH
T ss_pred             cccccchhhhcch
Confidence            9999999998874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.9e-13  Score=110.65  Aligned_cols=127  Identities=16%  Similarity=0.075  Sum_probs=97.1

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .|++..|.+|+||||+|+ .|+.++++.|++.+++. +.++.+|.++++.++.+++.+.++.+++.+.
T Consensus        14 ~~~v~~Ll~~g-~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~   90 (156)
T d1ihba_          14 LEQLTSLLQNN-VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQA   90 (156)
T ss_dssp             HHHHHHHTTSC-CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCC-CCcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccccccccccccccc
Confidence            37888888885 344445899999999875 79999999999987764 5688999999999999999999999998864


Q ss_pred             ccccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhc--chhHHHhhc-CCCCcchhchHH
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLV--HPFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~--~~~~~~~~n-~g~tp~dl~~~~  170 (339)
                         ..+..|..|.+|||+|+..++.+                 .++.++  .+.....++ +|+||++++.+.
T Consensus        91 ---~~~~~~~~~~~~l~~a~~~~~~~-----------------~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~  143 (156)
T d1ihba_          91 ---DVNIEDNEGNLPLHLAAKEGHLR-----------------VVEFLVKHTASNVGHRNHKGDTACDLARLY  143 (156)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             ---ccccccccccccccccccccccc-----------------ccccccccccccccccCCCCCCHHHHHHHc
Confidence               34555999999999999998841                 111111  111234556 899999987654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.4e-13  Score=113.37  Aligned_cols=101  Identities=11%  Similarity=0.022  Sum_probs=79.3

Q ss_pred             HHHHHHHhcc-CCC----CccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHH
Q 047454           22 EIVRIICKGV-IWN----DPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIY   96 (339)
Q Consensus        22 ~iv~~L~~~~-~~~----~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll   96 (339)
                      ++++.+++.. ...    ......+|.||||.|+..|+.+.++.+++.++......+.+|+||||+|++.|+.+++++|+
T Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll  165 (221)
T d1iknd_          86 ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL  165 (221)
T ss_dssp             HHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHH
Confidence            5566666654 111    11126678899999999999999999998887766656778999999999999999999999


Q ss_pred             cccCccccccccccCCCchHHHhhhcCCC
Q 047454           97 SSTFKSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus        97 ~~~~~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                      +.|++   ++.+|.+|.||||+|+..++.
T Consensus       166 ~~gad---~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         166 KCGAD---VNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             TTTCC---SCCCCTTCCCGGGGCTTSSCH
T ss_pred             hcCCc---ccccCCCCCCHHHHHHHCCCH
Confidence            98763   566699999999999998873

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=3.2e-13  Score=110.45  Aligned_cols=81  Identities=10%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHc
Q 047454           18 MQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYS   97 (339)
Q Consensus        18 ~~a~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~   97 (339)
                      ....++++.|++.. .+.+..|.+|+||||+|++.|+.++++.|++.+++. +.+|.+|+||||+|+++|+.+++++|++
T Consensus        58 ~~~~~iv~~Ll~~g-adin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          58 RTSLHIVDFLVQNS-GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             TTTHHHHHHHHHHC-SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcC-CChhhhhhhhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34568899999885 344445999999999999999999999999998775 6689999999999999999999999998


Q ss_pred             ccC
Q 047454           98 STF  100 (339)
Q Consensus        98 ~~~  100 (339)
                      .++
T Consensus       136 ~~~  138 (154)
T d1dcqa1         136 ALS  138 (154)
T ss_dssp             HHT
T ss_pred             hCC
Confidence            764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.39  E-value=4e-13  Score=119.65  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=72.8

Q ss_pred             cccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchH
Q 047454           37 QNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNIL  116 (339)
Q Consensus        37 ~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpL  116 (339)
                      ..+.+|.||||.|+..|+.++++.|++.+.+. +.+|.+|+||||+|+..|+.+++++|++.|++   ++.+|.+|+|||
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad---v~~~d~~G~TaL  269 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD---MEAVNKVGQTAF  269 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTT
T ss_pred             cccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHH
Confidence            33788999999999999999999999987764 66899999999999999999999999999863   566699999999


Q ss_pred             HHhhh
Q 047454          117 HFGGK  121 (339)
Q Consensus       117 HlA~~  121 (339)
                      |+|++
T Consensus       270 ~~A~e  274 (291)
T d1s70b_         270 DVADE  274 (291)
T ss_dssp             TSCCS
T ss_pred             HHHHH
Confidence            99976

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.36  E-value=5.3e-13  Score=117.59  Aligned_cols=84  Identities=14%  Similarity=0.080  Sum_probs=77.2

Q ss_pred             cccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCccccccccccCCCchHHH
Q 047454           39 QQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNILHF  118 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~D~~GnTpLHl  118 (339)
                      +.+|+||||+++..|+.++++.++...+.....+|..|+||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+
T Consensus       184 ~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad---in~~d~~G~T~L~~  260 (277)
T d2fo1e1         184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQL  260 (277)
T ss_dssp             SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHH
T ss_pred             ccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCcCCCCCCHHHH
Confidence            678999999999999999999988888777788899999999999999999999999999863   66679999999999


Q ss_pred             hhhcCCC
Q 047454          119 GGKLVPS  125 (339)
Q Consensus       119 A~~~~~~  125 (339)
                      |++.|+.
T Consensus       261 A~~~~~~  267 (277)
T d2fo1e1         261 AQANNHH  267 (277)
T ss_dssp             HHHTTCH
T ss_pred             HHHcCCH
Confidence            9999984

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.5e-12  Score=120.97  Aligned_cols=127  Identities=13%  Similarity=0.049  Sum_probs=96.9

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.+.+.. .+....|.+|.||+|.|++.|+.++++.|++.+.+. +..+..+.||||.++..++.++++++++.+. 
T Consensus       245 ~~~~~~~~~~-~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~-  321 (408)
T d1n11a_         245 EMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQA-  321 (408)
T ss_dssp             HHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC-
T ss_pred             hHhhhhhccc-cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeeccccc-
Confidence            4455555543 222333788999999999999999999999987664 5578889999999999999999999999875 


Q ss_pred             cccccccccCCCchHHHhhhcCCCCCcchhhhhhhHhhhHHHHHHhhcc-hhHHHhhc-CCCCcchhchHH
Q 047454          102 SNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVENLVH-PFLREAVN-NEQTPREVFTEE  170 (339)
Q Consensus       102 ~~~~~~~D~~GnTpLHlA~~~~~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n-~g~tp~dl~~~~  170 (339)
                        .++.+|.+|+||||+|++.|+.+                 .++.++. ....+.+| +|+||++++.+.
T Consensus       322 --~in~~d~~G~T~Lh~A~~~g~~~-----------------iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         322 --DVNAKTKLGYSPLHQAAQQGHTD-----------------IVTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             --CTTCCCTTSCCHHHHHHHTTCHH-----------------HHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             --cccccCCCCCCHHHHHHHcCCHH-----------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence              36666999999999999999841                 2222221 12245677 999999998665

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.4e-12  Score=117.67  Aligned_cols=32  Identities=19%  Similarity=0.103  Sum_probs=25.7

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGI   54 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~   54 (339)
                      ++|+.|++.. .|.+..|.+|+||||.|+..|+
T Consensus       121 ~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         121 ELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             HHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSH
T ss_pred             HHHHHHHHCC-CCCCcCCcccccHHHHhhhccc
Confidence            7889988885 4444558999999999998775

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.32  E-value=1.2e-13  Score=127.53  Aligned_cols=83  Identities=12%  Similarity=0.014  Sum_probs=67.5

Q ss_pred             cccCCcHHHHHHHCCcHHHHHH---HHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCcccccccc--ccCCC
Q 047454           39 QQLLKKAFFKAATLGISKFVQE---IIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSN--DNIRN  113 (339)
Q Consensus        39 d~~g~tpLh~Aa~~G~~~iv~~---Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~~~~~~~--D~~Gn  113 (339)
                      |.+|+||||+||++||.++++.   |++.+++ ++.+|.+|+||||+|+.+|+.++|++|++.+++   ++..  +.+|+
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~---~~~~~~~~~g~  162 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPT---EIMAMIQAENY  162 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT---THHHHHSHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---ccccccccCCC
Confidence            6789999999999999888765   5665544 566899999999999999999999999999853   3333  46799


Q ss_pred             chHHHhhhcCCC
Q 047454          114 NILHFGGKLVPS  125 (339)
Q Consensus       114 TpLHlA~~~~~~  125 (339)
                      ||||+|+..|+.
T Consensus       163 t~L~~Aa~~g~~  174 (346)
T d2ajaa1         163 HAFRLAAENGHL  174 (346)
T ss_dssp             HHHHHHHHTTCH
T ss_pred             ChhHHHHHHhhH
Confidence            999999999995

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.2e-12  Score=109.62  Aligned_cols=101  Identities=11%  Similarity=0.031  Sum_probs=69.8

Q ss_pred             HHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCcc
Q 047454           23 IVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKS  102 (339)
Q Consensus        23 iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~~  102 (339)
                      +++.+.... .+++..|.+|+||||+|+..|+.++++.|++.+++. +.+|.+|+||||.|+.+++.++++.+++.+...
T Consensus        21 li~~~~~~~-~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~   98 (221)
T d1iknd_          21 VIRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP   98 (221)
T ss_dssp             CCC-----C-CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTT
T ss_pred             HHHHHHhCC-CCcccCCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccc
Confidence            333333333 334444889999999999999999999999887764 558899999999999999999999888754321


Q ss_pred             --cccccc-ccCCCchHHHhhhcCCC
Q 047454          103 --NWLGSN-DNIRNNILHFGGKLVPS  125 (339)
Q Consensus       103 --~~~~~~-D~~GnTpLHlA~~~~~~  125 (339)
                        ...... +.+|+||||.|+..++.
T Consensus        99 ~~~~~~~~~~~~~~t~l~~a~~~~~~  124 (221)
T d1iknd_          99 HLHSILKATNYNGHTCLHLASIHGYL  124 (221)
T ss_dssp             SSSCGGGCCCTTCCCHHHHHHHTTCH
T ss_pred             cccccccccccccchhhhHHhhcCCh
Confidence              112222 56677777777776653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.1e-12  Score=100.80  Aligned_cols=101  Identities=15%  Similarity=0.105  Sum_probs=85.4

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccC
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTF  100 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~  100 (339)
                      .++++.|++.. .+.+..+.+|.+|++.++..|+.+.++.+++.+++. +..|..|.+|||+|+..++.+++++|++.++
T Consensus        46 ~ei~~~Ll~~~-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          46 PEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccccccccc-cccccccccCcccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            46788888875 333344889999999999999999999999887764 5589999999999999999999999999874


Q ss_pred             ccccccccccCCCchHHHhhhcCCC
Q 047454          101 KSNWLGSNDNIRNNILHFGGKLVPS  125 (339)
Q Consensus       101 ~~~~~~~~D~~GnTpLHlA~~~~~~  125 (339)
                        ...+.+|.+|.||||+|+..++.
T Consensus       124 --~~~~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_         124 --SNVGHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             --CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             --ccccccCCCCCCHHHHHHHcCCH
Confidence              23455599999999999999984

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.2e-12  Score=111.52  Aligned_cols=104  Identities=12%  Similarity=0.087  Sum_probs=80.5

Q ss_pred             HHHHHHHHhccCCCCccccccCCcHHHHHHH----CCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHH
Q 047454           21 VEIVRIICKGVIWNDPQNQQLLKKAFFKAAT----LGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIY   96 (339)
Q Consensus        21 ~~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~----~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll   96 (339)
                      .++++.|++..+.+.+..+..|.++++.+..    .+..++++.|++.+++. +.+|..|+||||+|+.+|+.+++++|+
T Consensus       161 ~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHH
Confidence            4678888877656666668888888876543    33457889999887764 567889999999999999999999999


Q ss_pred             cccCccccccccccCCCchHHHhhhcCCCCC
Q 047454           97 SSTFKSNWLGSNDNIRNNILHFGGKLVPSSE  127 (339)
Q Consensus        97 ~~~~~~~~~~~~D~~GnTpLHlA~~~~~~~~  127 (339)
                      +...  ..++.+|.+|+||||+|++.++.+.
T Consensus       240 ~~~g--~din~~d~~G~TpL~~A~~~~~~ei  268 (285)
T d1wdya_         240 EQEH--IEINDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             HSSS--CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HcCC--CCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            7531  1355569999999999999998643

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.6e-11  Score=104.69  Aligned_cols=79  Identities=13%  Similarity=0.051  Sum_probs=50.5

Q ss_pred             HHHHHHHhccCCCCccccccCCcHHHHHHHCCcHHHHHHHHHHCCCCcccccCCCchHhhHHHHcCChHHHHHHHcccCc
Q 047454           22 EIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFK  101 (339)
Q Consensus        22 ~iv~~L~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~iv~~Ll~~~p~~~~~~d~~G~t~LH~A~~~~~~~iv~~Ll~~~~~  101 (339)
                      ++++.|++.. .+.+..|.+|.||||+|++.|+.++++.|++.++..++.+|.+|+||||+|+++|+.+++++|++.|++
T Consensus       200 ~i~~~Li~~g-a~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd  278 (285)
T d1wdya_         200 AITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             HHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             HHHHHHHHCC-CCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            4556666553 223333666777777777777777777777655444555666777777777777777777777777653