Citrus Sinensis ID: 047456

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MVAPATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQLNI
Secondary Structure (PSIPRED)
ccccccccEEcccccEEEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEccccEEEEcccHHHHHHHHHHHHcHHHHccccccHHHHHHHHHcccccccccHHHHHcc
Coil and Loop (DISEMBL)
mvapatstnfmgmkPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNsrlpkdcnTTLAQLNI
Flexible Loop (DISEMBL)
mvapatstnfmgmkpQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEqelnsrlpkdcnttlaqlni
Low Complexity Region (SEG)
MVAPATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQLNI
Disordered region (IsUnstruct)
*****************LVEASKATGSVQFYEIAFGAVEI*******************************
Disordered Region (DISOPRED)
******STNFMGMKPQLLVEASKATGSVQFYEIAFGAVEI****************RLPKDCNTTLAQLNI
Disordered Region (DISEMBL)
********NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQLNI
Disordered Region (DISPRO)
*****TSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQLNI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVAPATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQLNI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q9LV66	166	Uncharacterized protein A	yes	no	0.760	0.325	0.444	8e-05

>sp|Q9LV66|Y5848_ARATH Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query: 10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCN 63
          F   K  LLVEA K   +V FY+ AFGA+E   ++  KRK +QEL   L  + N
Sbjct: 23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELN 76


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.125    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,227,805
Number of Sequences: 539616
Number of extensions: 501880
Number of successful extensions: 1249
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
224069912	164	predicted protein [Populus trichocarpa]	0.704	0.304	0.58	8e-08
225470242	161	PREDICTED: uncharacterized protein At5g4	0.577	0.254	0.682	8e-08
351723033	165	uncharacterized protein LOC100306467 [Gl	0.732	0.315	0.519	4e-07
255572644	165	conserved hypothetical protein [Ricinus	0.563	0.242	0.675	5e-07
356567730	163	PREDICTED: uncharacterized protein At5g4	0.704	0.306	0.52	1e-06
449511236	159	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.633	0.283	0.555	3e-06
449437180	159	PREDICTED: uncharacterized protein At5g4	0.633	0.283	0.555	3e-06
357505041	165	Early tobacco anther [Medicago truncatul	0.661	0.284	0.553	3e-06
388490626	165	unknown [Medicago truncatula]	0.661	0.284	0.553	3e-06
388492568	167	unknown [Lotus japonicus]	0.577	0.245	0.634	7e-06

>gi|224069912|ref|XP_002303084.1| predicted protein [Populus trichocarpa] gi|118487570|gb|ABK95611.1| unknown [Populus trichocarpa] gi|222844810|gb|EEE82357.1| predicted protein [Populus trichocarpa]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query: 5  ATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQEL 54
          A   +F   KPQL VEA KA  +VQFY+ AFGAVE  R  + KRKA+QEL
Sbjct: 15 AVEVSFKSFKPQLFVEAPKANDAVQFYKTAFGAVETCRTTQPKRKADQEL 64

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470242|ref|XP_002263284.1| PREDICTED: uncharacterized protein At5g48480 [Vitis vinifera]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 14 KPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQEL 54
          KPQL VEA KAT +VQFY+ AFGA E++R M  KRKA+QEL
Sbjct: 22 KPQLFVEAPKATDAVQFYKAAFGAEEVNRTMHPKRKADQEL 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723033|ref|NP_001235473.1| uncharacterized protein LOC100306467 [Glycine max] gi|255628635|gb|ACU14662.1| unknown [Glycine max]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 3  APATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQEL 54
          A A + +F+ +KPQLLVEA KA  ++ F++ AFGA E+ R +  KRKAE EL
Sbjct: 15 AAAATVSFVAVKPQLLVEAPKANDAILFFKAAFGAEEVGRTLNPKRKAEHEL 66

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572644|ref|XP_002527255.1| conserved hypothetical protein [Ricinus communis] gi|223533348|gb|EEF35099.1| conserved hypothetical protein [Ricinus communis]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 15 PQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQEL 54
          PQLLVEA +A  +VQFY++AFGAVE  R  + KRKAEQEL
Sbjct: 25 PQLLVEAPRANEAVQFYKVAFGAVETGRTTQPKRKAEQEL 64

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567730|ref|XP_003552070.1| PREDICTED: uncharacterized protein At5g48480-like [Glycine max]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query: 5  ATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQEL 54
          A + +F+ +KPQLL+EA KA  +V FY+ AF A E+ R +  KRKAE EL
Sbjct: 15 AAAVSFVALKPQLLIEAPKANDAVLFYKAAFAAEEVGRTLNPKRKAEHEL 64

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511236|ref|XP_004163901.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g48480-like [Cucumis sativus]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 9  NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQE 53
          +F   KPQLL++A KAT +V FY+ AF A E++R + +KRKAEQE
Sbjct: 15 SFKAFKPQLLLQAPKATDAVDFYKAAFAAEELNRTLHSKRKAEQE 59

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437180|ref|XP_004136370.1| PREDICTED: uncharacterized protein At5g48480-like [Cucumis sativus]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 9  NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQE 53
          +F   KPQLL++A KAT +V FY+ AF A E++R + +KRKAEQE
Sbjct: 15 SFKAFKPQLLLQAPKATDAVDFYKAAFAAEELNRTLHSKRKAEQE 59

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505041|ref|XP_003622809.1| Early tobacco anther [Medicago truncatula] gi|355497824|gb|AES79027.1| Early tobacco anther [Medicago truncatula] gi|388501826|gb|AFK38979.1| unknown [Medicago truncatula]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 34/47 (72%)

Query: 8  TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQEL 54
           +F+  KPQL VEA KA  +V FY+ AF A E+SR++  KRKA+QEL
Sbjct: 19 VSFVAFKPQLFVEAPKANDAVVFYKNAFAAEEVSRSLNAKRKADQEL 65

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490626|gb|AFK33379.1| unknown [Medicago truncatula]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 34/47 (72%)

Query: 8  TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQEL 54
           +F+  KPQL VEA KA  +V FY+ AF A E+SR++  KRKA+QEL
Sbjct: 19 VSFVAFKPQLFVEAPKANDAVVFYKNAFAAEEVSRSLNAKRKADQEL 65

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492568|gb|AFK34350.1| unknown [Lotus japonicus]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 14 KPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQEL 54
          KPQLLVEA KA  +V FY+ AFGA E+SR +  KRKA+ EL
Sbjct: 27 KPQLLVEAPKANDAVLFYKAAFGAEEVSRALNPKRKADHEL 67

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:2165996	166	AT5G48480 "AT5G48480" [Arabido	0.760	0.325	0.444	4.3e-06

TAIR|locus:2165996 AT5G48480 "AT5G48480" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query:    10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCN 63
             F   K  LLVEA K   +V FY+ AFGA+E   ++  KRK +QEL   L  + N
Sbjct:    23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELN 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.125   0.334    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       71        71   0.00091  102 3  10 23  0.47    28
                                                     29  0.42    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  106 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.28u 0.19s 12.47t   Elapsed:  00:00:01
  Total cpu time:  12.28u 0.19s 12.47t   Elapsed:  00:00:01
  Start:  Sat May 11 08:52:40 2013   End:  Sat May 11 08:52:41 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II1160 SubName- Full=Putative uncharacterized protein; (164 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
COG2764	136	PhnB Uncharacterized protein conserved in bacteria	99.51
PRK10148	147	hypothetical protein; Provisional	99.37
cd06588	128	PhnB_like Escherichia coli PhnB and similar protei	99.22
PF06983	116	3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltrans	99.02
cd08355	122	Glo_EDI_BRP_like_14 This conserved domain belongs	98.83
cd07246	122	Glo_EDI_BRP_like_8 This conserved domain belongs t	98.66
cd08359	119	Glo_EDI_BRP_like_22 This conserved domain belongs	97.64
cd08350	120	BLMT_like BLMT, a bleomycin resistance protein enc	97.2
cd08349	112	BLMA_like Bleomycin binding protein (BLMA) and sim	97.1
TIGR00068	150	glyox_I lactoylglutathione lyase. Glyoxylase I is	97.08
PRK10291	129	glyoxalase I; Provisional	96.96
PF00903	128	Glyoxalase: Glyoxalase/Bleomycin resistance protei	96.86
cd08354	122	Glo_EDI_BRP_like_13 This conserved domain belongs	96.73
PLN03042	185	Lactoylglutathione lyase; Provisional	96.69
cd08358	127	Glo_EDI_BRP_like_21 This conserved domain belongs	96.67
cd07238	112	Glo_EDI_BRP_like_5 This conserved domain belongs t	96.64
cd08346	126	PcpA_N_like N-terminal domain of Sphingobium chlor	96.6
PLN02367	233	lactoylglutathione lyase	96.59
cd09011	120	Glo_EDI_BRP_like_23 This conserved domain belongs	96.52
cd07233	121	Glyoxalase_I Glyoxalase I catalyzes the isomerizat	96.39
cd08352	125	Glo_EDI_BRP_like_1 This conserved domain belongs t	96.37
cd08342	136	HPPD_N_like N-terminal domain of 4-hydroxyphenylpy	96.35
cd08356	113	Glo_EDI_BRP_like_17 This conserved domain belongs	96.3
cd08343	131	ED_TypeI_classII_C C-terminal domain of type I, cl	96.25
cd07241	125	Glo_EDI_BRP_like_3 This conserved domain belongs t	96.2
cd07243	143	2_3_CTD_C C-terminal domain of catechol 2,3-dioxyg	96.19
PF12681	108	Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B	96.19
TIGR03081	128	metmalonyl_epim methylmalonyl-CoA epimerase. Membe	96.09
cd07263	119	Glo_EDI_BRP_like_16 This conserved domain belongs	96.08
cd07264	125	Glo_EDI_BRP_like_15 This conserved domain belongs	95.96
cd07253	125	Glo_EDI_BRP_like_2 This conserved domain belongs t	95.85
cd09012	124	Glo_EDI_BRP_like_24 This conserved domain belongs	95.79
COG0346	138	GloA Lactoylglutathione lyase and related lyases [	95.68
TIGR03645	162	glyox_marine lactoylglutathione lyase family prote	95.64
cd08345	113	Fosfomycin_RP Fosfomycin resistant protein; inhibi	95.58
PF13669	109	Glyoxalase_4: Glyoxalase/Bleomycin resistance prot	95.55
PRK11478	129	putative lyase; Provisional	95.38
cd07254	120	Glo_EDI_BRP_like_20 This conserved domain belongs	95.34
cd07257	153	THT_oxygenase_C The C-terminal domain of 2,4,5-Tri	95.26
cd07256	161	HPCD_C_class_II C-terminal domain of 3,4-dihydroxy	95.25
COG3865	151	Uncharacterized protein conserved in bacteria [Fun	95.17
cd08357	125	Glo_EDI_BRP_like_18 This conserved domain belongs	95.16
cd07262	123	Glo_EDI_BRP_like_19 This conserved domain belongs	95.14
cd09014	166	BphC-JF8_C_like C-terminal, catalytic, domain of B	95.04
cd07251	121	Glo_EDI_BRP_like_10 This conserved domain belongs	94.97
cd08351	123	ChaP_like ChaP, an enzyme involved in the biosynth	94.95
cd09013	121	BphC-JF8_N_like N-terminal, non-catalytic, domain	94.93
TIGR03211	303	catechol_2_3 catechol 2,3 dioxygenase. Members of	94.92
cd07252	120	BphC1-RGP6_N_like N-terminal domain of 2,3-dihydro	94.82
cd07265	122	2_3_CTD_N N-terminal domain of catechol 2,3-dioxyg	94.69
cd07245	114	Glo_EDI_BRP_like_9 This conserved domain belongs t	94.68
cd08362	120	BphC5-RrK37_N_like N-terminal, non-catalytic, doma	94.56
cd07240	117	ED_TypeI_classII_N N-terminal domain of type I, cl	94.49
cd08348	134	BphC2-C3-RGP6_C_like The single-domain 2,3-dihydro	94.45
PLN02300	286	lactoylglutathione lyase	94.39
cd07261	114	Glo_EDI_BRP_like_11 This conserved domain belongs	94.24
TIGR02295	294	HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. T	94.03
cd08360	134	MhqB_like_C C-terminal domain of Burkholderia sp.	93.96
cd08353	142	Glo_EDI_BRP_like_7 This conserved domain belongs t	93.95
cd07247	114	SgaA_N_like N-terminal domain of Streptomyces gris	93.84
cd07244	121	FosA FosA, a Fosfomycin resistance protein, cataly	93.77
cd06587	112	Glo_EDI_BRP_like This domain superfamily is found	93.7
PRK04101	139	fosfomycin resistance protein FosB; Provisional	93.67
cd07255	125	Glo_EDI_BRP_like_12 This conserved domain belongs	93.61
cd08364	131	FosX FosX, a fosfomycin resistance protein, cataly	93.57
cd07242	128	Glo_EDI_BRP_like_6 This conserved domain belongs t	93.42
cd07249	128	MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, als	93.35
cd07266	121	HPCD_N_class_II N-terminal domain of 3,4-dihydroxy	93.34
cd07235	122	MRD Mitomycin C resistance protein (MRD). Mitomyci	93.33
cd07239	144	BphC5-RK37_C_like C-terminal, catalytic, domain of	93.26
cd07237	154	BphC1-RGP6_C_like C-terminal domain of 2,3-dihydro	92.77
cd08347	157	PcpA_C_like C-terminal domain of Sphingobium chlor	92.28
COG3324	127	Predicted enzyme related to lactoylglutathione lya	92.24
cd08363	131	FosB FosB, a fosfomycin resistance protein, cataly	92.19
PLN02300	286	lactoylglutathione lyase	92.0
cd08361	124	PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cuma	91.93
cd07250	191	HPPD_C_like C-terminal domain of 4-hydroxyphenylpy	91.25
TIGR03211	303	catechol_2_3 catechol 2,3 dioxygenase. Members of	91.14
cd07258	141	PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cuma	91.13
TIGR02295	294	HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. T	89.99
PRK06724	128	hypothetical protein; Provisional	88.9
TIGR01263	353	4HPPD 4-hydroxyphenylpyruvate dioxygenase. This pr	88.88
TIGR03213	286	23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase	88.01
cd08344	112	MhqB_like_N N-terminal domain of MhqB, a type I ex	86.54
TIGR03213	286	23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase	86.53
cd07267	113	THT_Oxygenase_N N-terminal domain of 2,4,5-trihydr	86.3
TIGR01263	353	4HPPD 4-hydroxyphenylpyruvate dioxygenase. This pr	83.17
COG0456	177	RimI Acetyltransferases [General function predicti	80.67

>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.51  E-value=2.1e-14  Score=98.31  Aligned_cols=50  Identities=20%  Similarity=0.332  Sum_probs=45.3

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCC----------cchhccccceeeceeccccccc
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETK----------RKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd----------Gk~~~~~~~v~hael~~g~~~~   69 (71)
                      +++|||.+++ ++++||+||+++|||+++.|++.+|          |+       |+||+|++|...+
T Consensus         1 ~l~PYl~f~g-n~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~-------i~HA~l~i~g~~i   60 (136)
T COG2764           1 TLSPYLFFNG-NAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGR-------IMHAELRIGGSTI   60 (136)
T ss_pred             CcceEEEECC-CHHHHHHHHHHHhCceEEEEEEcCccCccccccccCc-------eEEEEEEECCEEE
Confidence            4789999985 8999999999999999999999888          65       9999999997654

>PRK10148 hypothetical protein; Provisional

Probab=99.37  E-value=9.8e-13  Score=88.61  Aligned_cols=57  Identities=11%  Similarity=0.195  Sum_probs=42.3

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeec---CCCcchh------c----cccceeeceeccccccc
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNM---ETKRKAE------Q----ELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~---~PdGk~~------~----~~~~v~hael~~g~~~~   69 (71)
                      .|+|||.+++ ++++||+||+++|||+++.|+.   .|++.-+      .    +--.|+||+|++|...+
T Consensus         2 ~l~pyL~f~g-~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~l   71 (147)
T PRK10148          2 PLSPYLSFAG-NCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDI   71 (147)
T ss_pred             eeEEEEEeCC-CHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEE
Confidence            4899999975 8999999999999999998874   2211100      0    01269999999987654

>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E

Probab=99.22  E-value=2.5e-11  Score=77.25  Aligned_cols=56  Identities=18%  Similarity=0.249  Sum_probs=42.6

Q ss_pred             ceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcch---hccccceeeceeccccccc
Q 047456           13 MKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKA---EQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~---~~~~~~v~hael~~g~~~~   69 (71)
                      ++|||.+.+ ++++||+||+++||++...++..++...   +..-..|+|++|++|...+
T Consensus         1 l~p~L~~~~-~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l   59 (128)
T cd06588           1 ITPYLWFNG-NAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRL   59 (128)
T ss_pred             CeeEEeeCC-CHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEE
Confidence            589999953 8999999999999999998875322211   1222369999999998765

coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to

>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A

Probab=99.02  E-value=5.9e-10  Score=72.87  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=42.7

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeec-CCCcchhccccceeeceeccccccc
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNM-ETKRKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~-~PdGk~~~~~~~v~hael~~g~~~~   69 (71)
                      .|+|||..++ +|++|++||+++||..++.++. .|++..+ .-..|+||+|+++...+
T Consensus         2 ki~pyL~F~g-~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~-~~~~v~ha~l~i~g~~l   58 (116)
T PF06983_consen    2 KITPYLWFNG-NAEEALEFYKEVFGGSEIMTFGDYPDDEPE-WKDKVMHAELTIGGQKL   58 (116)
T ss_dssp             SEEEEEEESS--HHHHHHHHHHHSTTEEEEEEEE-TTTCTT-HTTSEEEEEEEETTEEE
T ss_pred             ceEEEEEeCC-CHHHHHHHHHHHcCCCEEEEEeECCCCCCC-CCCcEEEEEEEECCeEE
Confidence            5899999986 9999999999999988877643 3443322 44479999999987654

>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.83  E-value=8.1e-09  Score=63.39  Aligned_cols=46  Identities=15%  Similarity=0.082  Sum_probs=37.8

Q ss_pred             ceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhccccceeeceeccccc
Q 047456           13 MKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLA   67 (71)
Q Consensus        13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~   67 (71)
                      ++|+|.|+  |..+|++||+++||.+...+.++++|+       +.|+++++|..
T Consensus         1 ~~p~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~-------~~~~~l~~~~~   46 (122)
T cd08355           1 VWPTLRYR--DAAAAIDWLTDAFGFEERLVVPDDDGG-------VAHAELRFGDG   46 (122)
T ss_pred             CeEEEEEC--CHHHHHHHHHHhcCCEEEEEEeCCCCc-------EEEEEEEECCE
Confidence            58999997  799999999999999999887666665       55777776643

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.66  E-value=6.4e-08  Score=58.25  Aligned_cols=47  Identities=26%  Similarity=0.441  Sum_probs=37.6

Q ss_pred             ccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhccccceeeceecccc
Q 047456           11 MGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTL   66 (71)
Q Consensus        11 ~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~   66 (71)
                      |+|.|+|.|+  |..++++||+++||.+.+.+...++|+       +.++.+.+|.
T Consensus         1 ~~~~~~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~-------~~~~~l~~~~   47 (122)
T cd07246           1 HTVTPYLIVR--DAAAAIDFYKKAFGAEELERMPDDDGR-------VMHAELRIGD   47 (122)
T ss_pred             CceeEEEEEC--CHHHHHHHHHHhhCCEEEEEEeCCCCC-------EEEEEEEECC
Confidence            6899999997  799999999999999999887666664       4455555443

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=97.64  E-value=8.2e-05  Score=45.03  Aligned_cols=30  Identities=17%  Similarity=0.386  Sum_probs=26.7

Q ss_pred             ccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           11 MGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        11 ~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      +++.|.|.|+  |.+++++||+++||.+...+
T Consensus         1 ~~~~~~l~v~--D~~~s~~FY~~~lG~~~~~~   30 (119)
T cd08359           1 TSLYPVIVTD--DLAETADFYVRHFGFTVVFD   30 (119)
T ss_pred             CcceeEEEEC--CHHHHHHHHHHhhCcEEEec
Confidence            4789999997  79999999999999987754

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins

Probab=97.20  E-value=0.00048  Score=42.37  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=26.4

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      +++|.|.|+  |..++++||++ ||.+...+.+
T Consensus         3 ~~~~~l~v~--Dl~~s~~FY~~-lG~~~~~~~~   32 (120)
T cd08350           3 TTIPNLPSR--DLDATEAFYAR-LGFSVGYRQA   32 (120)
T ss_pred             cccceeEcC--CHHHHHHHHHH-cCCEEEecCC
Confidence            688999997  79999999999 9999887644

BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.

>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm

Probab=97.10  E-value=0.00076  Score=39.81  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             eeEEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           14 KPQLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        14 tP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|.|+  |.+++++||+++||.+...+.
T Consensus         1 ~~~i~v~--d~~~s~~FY~~~lg~~~~~~~   28 (112)
T cd08349           1 VPVLPVS--DIERSLAFYRDVLGFEVDWEH   28 (112)
T ss_pred             CCEEEEC--CHHHHHHHHHhccCeEEEEEc
Confidence            3889997  799999999999999987664

BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large

>TIGR00068 glyox_I lactoylglutathione lyase

Probab=97.08  E-value=0.0017  Score=41.98  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             eecccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456            6 TSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus         6 ~~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      ++-.+.--...|.|.  |.++|++||+++||.+++.+...|+++
T Consensus        12 ~~~~~~i~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~   53 (150)
T TIGR00068        12 KTKKRRLLHTMLRVG--DLDKSLDFYTEVLGMKLLRKRDFPEMK   53 (150)
T ss_pred             ccCCceEEEEEEEec--CHHHHHHHHHHhcCCEEEEEeccCCCc
Confidence            334444455678886  799999999999999998876666543

Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.

>PRK10291 glyoxalase I; Provisional

Probab=96.96  E-value=0.0014  Score=40.80  Aligned_cols=30  Identities=20%  Similarity=0.290  Sum_probs=25.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      |.|+  |.+++++||+++||.+.+.+...|++
T Consensus         2 l~V~--Dle~s~~FY~~~LG~~~~~~~~~~~~   31 (129)
T PRK10291          2 LRVG--DLQRSIDFYTNVLGMKLLRTSENPEY   31 (129)
T ss_pred             EEec--CHHHHHHHHHhccCCEEEEeecCCCC
Confidence            6786  79999999999999998887666654

>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein

Probab=96.86  E-value=0.0033  Score=37.21  Aligned_cols=26  Identities=15%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      |.|+  |.+++++||+++||.+.+....
T Consensus         7 i~v~--d~~~~~~FY~~~lG~~~~~~~~   32 (128)
T PF00903_consen    7 IRVK--DLEKAIDFYTDVLGFRLVEESD   32 (128)
T ss_dssp             EEES--CHHHHHHHHHHTTTSEEEEEEE
T ss_pred             EEcC--CHHHHHHHHHHHhCCcEEeeec
Confidence            6775  7999999999999999998766

; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....

>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.73  E-value=0.0029  Score=37.96  Aligned_cols=28  Identities=21%  Similarity=0.396  Sum_probs=24.3

Q ss_pred             ceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           13 MKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      +...|.|.  |.+++++||+++||.++..|
T Consensus         2 ~~~~l~v~--d~~~s~~Fy~~~lG~~~~~~   29 (122)
T cd08354           2 LETALYVD--DLEAAEAFYEDVLGLELMLK   29 (122)
T ss_pred             eEEEEEeC--CHHHHHHHHHhccCCEEeec
Confidence            34678896  79999999999999998876

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PLN03042 Lactoylglutathione lyase; Provisional

Probab=96.69  E-value=0.0033  Score=44.18  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             cccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456            8 TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus         8 ~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      -||.---=.|.|+  |-+++|+||+++||.+++.|...|+++
T Consensus        24 ~~~~~~Ht~i~V~--Dle~Si~FY~~vLG~~~~~r~~~~~~~   63 (185)
T PLN03042         24 KGYIMQQTMFRIK--DPKASLDFYSRVLGMSLLKRLDFPEMK   63 (185)
T ss_pred             CCcEEEEEEEeeC--CHHHHHHHHHhhcCCEEEEEEEcCCCc
Confidence            3443333358886  799999999999999999997766653

>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.67  E-value=0.0037  Score=41.58  Aligned_cols=32  Identities=13%  Similarity=0.190  Sum_probs=27.9

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      ..|.|+  |-+++|+||+++||-+++.|...|+|
T Consensus         6 v~irV~--DlerSi~FY~~vLG~~~~~~~~~~~~   37 (127)
T cd08358           6 FVFKVG--NRNKTIKFYREVLGMKVLRHEEFEEG   37 (127)
T ss_pred             EEEEeC--CHHHHHHHHHHhcCCEEEeeecCccc
Confidence            457886  79999999999999999998887874

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.64  E-value=0.0027  Score=38.21  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=24.0

Q ss_pred             ceeEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456           13 MKPQLLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      +.|.|.|+  |.+++++||+++||.+...
T Consensus         2 ~~~~l~v~--Dl~~s~~FY~~~lG~~~~~   28 (112)
T cd07238           2 IVPNLPVA--DPEAAAAFYADVLGLDVVM   28 (112)
T ss_pred             ccceEecC--CHHHHHHHHHHhcCceEEE
Confidence            57899997  7999999999999998764

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.

>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=96.60  E-value=0.0033  Score=37.53  Aligned_cols=30  Identities=20%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      .|.|+  |.+++++||++.||.++..+..+++
T Consensus         6 ~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~   35 (126)
T cd08346           6 TLITR--DAQETVDFYTDVLGLRLVKKTVNQD   35 (126)
T ss_pred             EEEcC--ChhHhHHHHHHccCCEEeeeEeccC
Confidence            47775  7999999999999999987765443

The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>PLN02367 lactoylglutathione lyase

Probab=96.59  E-value=0.0041  Score=46.13  Aligned_cols=44  Identities=14%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             ceecccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcch
Q 047456            5 ATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKA   50 (71)
Q Consensus         5 ~~~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~   50 (71)
                      +.+-||.----.|.|+  |.+++|+||+++||.+++.|...|+++.
T Consensus        69 ~~t~~~~~~HtmlRVk--Dle~Sl~FYt~vLGm~ll~r~d~pe~~f  112 (233)
T PLN02367         69 EATKGYIMQQTMYRIK--DPKASLDFYSRVLGMSLLKRLDFPEMKF  112 (233)
T ss_pred             CCCCCcEEEEEEEEeC--CHHHHHHHHHHhcCCEEeEEEecCCCcE
Confidence            3455666555578997  7999999999999999999988787653

>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.52  E-value=0.0044  Score=37.90  Aligned_cols=28  Identities=29%  Similarity=0.452  Sum_probs=23.8

Q ss_pred             ceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           13 MKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      ..|.|.|+  |-.++++||+++||.+...+
T Consensus         4 ~~~~l~v~--D~~~a~~FY~~~lG~~~~~~   31 (120)
T cd09011           4 KNPLLVVK--DIEKSKKFYEKVLGLKVVMD   31 (120)
T ss_pred             EEEEEEEC--CHHHHHHHHHHhcCCEEeec
Confidence            45789997  79999999999999987643

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione

Probab=96.39  E-value=0.0068  Score=36.27  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      |.|+  |.++|++||++.||.+...+...++
T Consensus         6 i~v~--d~~~a~~fY~~~lG~~~~~~~~~~~   34 (121)
T cd07233           6 LRVK--DLEKSLDFYTDVLGMKLLRRKDFPE   34 (121)
T ss_pred             EEec--CcHHHHHHHHhccCCeEEEEEecCC
Confidence            5664  7999999999999999887655554

Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly

>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.37  E-value=0.0064  Score=36.06  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=21.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      |.|.  |..+|++||++.||.+...+..
T Consensus         9 l~v~--d~~~a~~fy~~~lG~~~~~~~~   34 (125)
T cd08352           9 IICS--DYEKSKEFYVEILGFKVIREVY   34 (125)
T ss_pred             EEcC--CHHHHHHHHHHhcCCEEeeeee
Confidence            6775  7999999999999998876543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS)

Probab=96.35  E-value=0.006  Score=38.75  Aligned_cols=29  Identities=10%  Similarity=0.218  Sum_probs=24.3

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      -|.|+  |..++++||+++||.+...|...+
T Consensus         5 ~i~V~--D~e~s~~FY~~vLGf~~~~~~~~~   33 (136)
T cd08342           5 EFYVG--NAKQLASWFSTKLGFEPVAYHGSE   33 (136)
T ss_pred             EEEeC--CHHHHHHHHHHhcCCeEEEecCCC
Confidence            37785  799999999999999998876543

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su

>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.30  E-value=0.0042  Score=38.46  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=25.1

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      ++.|.|.|+  |-.++++||++ +|.+...+
T Consensus         2 ~~~~~l~v~--Dl~~s~~FY~~-LGf~~~~~   29 (113)
T cd08356           2 SIRPFIPAK--DFAESKQFYQA-LGFELEWE   29 (113)
T ss_pred             cceeccccc--cHHHHHHHHHH-hCCeeEec
Confidence            688999997  79999999987 99998876

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain

Probab=96.25  E-value=0.0078  Score=37.66  Aligned_cols=29  Identities=17%  Similarity=0.208  Sum_probs=23.7

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      .|.|+  |..++++||+++||.+...+...|
T Consensus         4 ~l~V~--dl~~a~~Fy~~~lG~~~~~~~~~~   32 (131)
T cd08343           4 VLRTP--DVAATAAFYTEVLGFRVSDRVGDP   32 (131)
T ss_pred             EEEcC--CHHHHHHHHHhcCCCEEEEEEccC
Confidence            36775  799999999999999988765544

This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are

>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.20  E-value=0.0095  Score=35.57  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNME   45 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~   45 (71)
                      .|.|+  |-.++++||+++||.+...|...
T Consensus         6 ~l~v~--dl~~s~~FY~~~lg~~~~~~~~~   33 (125)
T cd07241           6 AIWTK--DLERMKAFYVTYFGATSNEKYHN   33 (125)
T ss_pred             EEEec--CHHHHHHHHHHHhCCEeeceEeC
Confidence            47786  79999999999999987666443

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase

Probab=96.19  E-value=0.011  Score=38.43  Aligned_cols=30  Identities=13%  Similarity=0.174  Sum_probs=25.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      |.|+  |-.++++||+++||-++..|+..|+|
T Consensus        12 l~v~--Dle~s~~FY~~vLGf~~~~~~~~~~~   41 (143)
T cd07243          12 LTGE--DIAETTRFFTDVLDFYLAERVVDPDG   41 (143)
T ss_pred             EecC--CHHHHHHHHHHhcCCEEEEEEecCCC
Confidence            7775  79999999999999999888766655

This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.

>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A

Probab=96.19  E-value=0.011  Score=34.86  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |..++++||++.||.+.+.+
T Consensus         1 l~v~--d~~~a~~FY~~~lg~~~~~~   24 (108)
T PF12681_consen    1 LPVS--DLEAAAAFYEDVLGFEVVFD   24 (108)
T ss_dssp             EEES--SHHHHHHHHHHTTTSEEEEE
T ss_pred             CccC--CHHHHHHHHHHhcCCEEEEe
Confidence            5675  79999999999999999973

...

>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase

Probab=96.09  E-value=0.0078  Score=36.32  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |..++++||+++||.+...+.
T Consensus         7 l~v~--D~~~s~~FY~~~lG~~~~~~~   31 (128)
T TIGR03081         7 IAVP--DLEEAAKLYEDVLGAHVSHIE   31 (128)
T ss_pred             EEeC--CHHHHHHHHHHHhCCCCccce
Confidence            7775  799999999999999887654

Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.

>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.08  E-value=0.012  Score=34.39  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=22.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      |.|.  |.+++++||+++||.+...+..
T Consensus         4 l~v~--d~~~~~~fY~~~lG~~~~~~~~   29 (119)
T cd07263           4 LYVD--DQDKALAFYTEKLGFEVREDVP   29 (119)
T ss_pred             EEeC--CHHHHHHHHHhccCeEEEEeec
Confidence            5665  7999999999999999887755

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.96  E-value=0.017  Score=34.83  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=21.3

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |.+++++||+++||.+....
T Consensus         5 ~l~v~--D~~~s~~FY~~~lG~~~~~~   29 (125)
T cd07264           5 IIYVE--DVEKTLEFYERAFGFERRFL   29 (125)
T ss_pred             EEEEc--CHHHHHHHHHHhhCCeEEee
Confidence            47786  79999999999999987643

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.85  E-value=0.016  Score=34.27  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      .|.|+  |.+++++||+++||.+...+..
T Consensus         8 ~l~v~--d~~~s~~Fy~~~lG~~~~~~~~   34 (125)
T cd07253           8 VLTVA--DIEATLDFYTRVLGMEVVRFGE   34 (125)
T ss_pred             EEEec--CHHHHHHHHHHHhCceeecccc
Confidence            36675  7999999999999999886643

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.79  E-value=0.014  Score=35.90  Aligned_cols=30  Identities=20%  Similarity=0.144  Sum_probs=23.1

Q ss_pred             eeEEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           14 KPQLLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        14 tP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      ...|.|+  |-+++++||++ ||.+...+..++
T Consensus         3 ~v~l~V~--Dl~~s~~FY~~-lGf~~~~~~~~~   32 (124)
T cd09012           3 FINLPVK--DLEKSTAFYTA-LGFEFNPQFSDE   32 (124)
T ss_pred             EEEeecC--CHHHHHHHHHH-CCCEEccccCCC
Confidence            4568896  79999999976 999877554443

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]

Probab=95.68  E-value=0.017  Score=33.04  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=24.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      -|.|+  |-+++++||+..+|.+.+.+....
T Consensus         7 ~l~v~--dl~~s~~FY~~~LG~~~~~~~~~~   35 (138)
T COG0346           7 TLAVP--DLEASIDFYTDVLGLRLVKDTVNE   35 (138)
T ss_pred             EEeeC--CHhHhHHHHHhhcCCeeeeecccc
Confidence            47786  699999999999999999886543

>TIGR03645 glyox_marine lactoylglutathione lyase family protein

Probab=95.64  E-value=0.014  Score=38.80  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |-++|++||+++||.+.+.+
T Consensus         9 ~i~V~--Dle~s~~FY~~~LG~~~~~~   33 (162)
T TIGR03645         9 GISVP--DLDAAVKFYTEVLGWYLIMP   33 (162)
T ss_pred             EEEeC--CHHHHHHHHHHhcCCEEEec
Confidence            47886  79999999999999988754

Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.

>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin

Probab=95.58  E-value=0.019  Score=34.16  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=21.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |..++++||+++||.+.+.|.
T Consensus         4 l~v~--d~~~s~~Fy~~~lg~~~~~~~   28 (113)
T cd08345           4 LIVK--DLNKSIAFYRDILGAELIYSS   28 (113)
T ss_pred             EEEC--CHHHHHHHHHHhcCCeeeecc
Confidence            6675  799999999999999987663

This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A

Probab=95.55  E-value=0.015  Score=35.78  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=25.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCcch
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRKA   50 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~   50 (71)
                      ++|+  |..+|++||++.||.+...+...+..++
T Consensus         5 i~V~--Dl~~a~~~~~~~lG~~~~~~~~~~~~~v   36 (109)
T PF13669_consen    5 IVVP--DLDAAAAFYCDVLGFEPWERYRDEPQGV   36 (109)
T ss_dssp             EEES---HHHHHHHHHHCTTHEEEEEEEEGCTTE
T ss_pred             EEcC--CHHHHHHHHHHhhCCcEEEEEecCCCCE
Confidence            5775  7999999999999999887776665543

>PRK11478 putative lyase; Provisional

Probab=95.38  E-value=0.02  Score=34.90  Aligned_cols=24  Identities=21%  Similarity=0.181  Sum_probs=20.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |..++++||+++||.+...+
T Consensus        12 l~v~--D~~~a~~FY~~~LG~~~~~~   35 (129)
T PRK11478         12 IIAT--DYAVSKAFYCDILGFTLQSE   35 (129)
T ss_pred             EEcC--CHHHHHHHHHHHhCCEeccc
Confidence            6675  79999999999999987644

>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.34  E-value=0.03  Score=33.95  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=23.6

Q ss_pred             ceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           13 MKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      +.+.|.|+  |.+++++||+++||.+...+
T Consensus         3 ~hv~l~v~--d~~~a~~FY~~~lG~~~~~~   30 (120)
T cd07254           3 FHVALNVD--DLEASIAFYSKLFGVEPTKV   30 (120)
T ss_pred             EEEEEEeC--CHHHHHHHHHHHhCCeEecc
Confidence            45678886  79999999999999987655

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway

Probab=95.26  E-value=0.029  Score=36.74  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=23.1

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      |.|+  |-.++++||+++||.+...+...+
T Consensus         7 l~V~--Dle~a~~FY~~~LG~~~~~~~~~~   34 (153)
T cd07257           7 LEVP--DFAASFDWYTETFGLKPSDVIYLP   34 (153)
T ss_pred             EecC--CHHHHHHHHHHhcCCeEEeeEecC
Confidence            6675  799999999999999887665544

This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases

Probab=95.25  E-value=0.03  Score=36.96  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=23.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      |.|+  |-+++++||+++||.+...+...++|
T Consensus         9 l~V~--Dl~~s~~FY~~vLGl~~~~~~~~~~~   38 (161)
T cd07256           9 LRVP--DVDAGLAYYRDELGFRVSEYTEDDDG   38 (161)
T ss_pred             EecC--CHHHHHHHHHhccCCEEEEEeccCCC
Confidence            6775  79999999999999988766544444

This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of

>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.17  E-value=0.052  Score=38.75  Aligned_cols=52  Identities=19%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             ccceeEEEEecCChhHHHHHHHHhhCcEEEE---eec--CCCcchhccccceeeceeccccc
Q 047456           11 MGMKPQLLVEASKATGSVQFYEIAFGAVEIS---RNM--ETKRKAEQELNSRLPKDCNTTLA   67 (71)
Q Consensus        11 ~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~---Rl~--~PdGk~~~~~~~v~hael~~g~~   67 (71)
                      .-++|+|..+. +|.+|.+||...|--.++.   |.+  .|+|    .-=.|++++.++++.
T Consensus         4 ~kit~~L~F~~-~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g----~~G~Vl~a~F~l~g~   60 (151)
T COG3865           4 PKITPFLWFDG-NAEEAMNFYLSTFPDSKIIGITRYPEGEPGG----KEGKVLVAEFTLNGQ   60 (151)
T ss_pred             CcceeEEEECC-cHHHHHHHHHHhCCcceeeeeeecCCCCCCC----CCccEEEEEEEECCe
Confidence            46899999985 9999999999999877765   433  2333    122599999988764

>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.16  E-value=0.038  Score=33.15  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=19.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEE
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      |.|+  |-.++++||+++||.+...
T Consensus         5 l~v~--Dl~~s~~FY~~~lG~~~~~   27 (125)
T cd08357           5 IPVR--DLEAARAFYGDVLGCKEGR   27 (125)
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEee
Confidence            5564  7999999999999998754

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.14  E-value=0.031  Score=33.90  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             EEEEecCChhHHHHHHHHhh---CcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAF---GAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AF---GA~Ev~R   42 (71)
                      .|.|+  |.+++++||+++|   |.+++.+
T Consensus         5 ~l~v~--d~~~s~~FY~~~f~~lg~~~~~~   32 (123)
T cd07262           5 TLGVN--DLERARAFYDAVLAPLGIKRVME   32 (123)
T ss_pred             EEecC--cHHHHHHHHHHHHhhcCceEEee
Confidence            36675  7999999999996   7777655

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=95.04  E-value=0.039  Score=36.82  Aligned_cols=31  Identities=16%  Similarity=0.120  Sum_probs=25.4

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      -|.|+  |-+++++||++.||.+.+.+...++|
T Consensus        11 ~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~   41 (166)
T cd09014          11 NLLAS--DVDANRDFMEEVLGFRLREQIRLDNG   41 (166)
T ss_pred             EEEcC--CHHHHHHHHHHccCCEEEEEEecCCC
Confidence            37886  79999999999999998877655443

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th

>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=94.97  E-value=0.027  Score=33.54  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=21.8

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |.+++.+||+++||-++..|
T Consensus         3 ~l~v~--d~~~a~~FY~~~lg~~~~~~   27 (121)
T cd07251           3 TLGVA--DLARSRAFYEALLGWKPSAD   27 (121)
T ss_pred             eEeeC--CHHHHHHHHHHhcCceeccc
Confidence            47786  79999999999999998766

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins

Probab=94.95  E-value=0.038  Score=34.09  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      ..|.|+  |-+++++||+++||.++..
T Consensus         8 v~l~v~--Dl~~s~~FY~~~lG~~~~~   32 (123)
T cd08351           8 TIVPAR--DREASAEFYAEILGLPWAK   32 (123)
T ss_pred             EEEEcC--CHHHHHHHHHHhcCCEeee
Confidence            457786  7999999999999998865

ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=94.93  E-value=0.036  Score=33.85  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=21.9

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+.+.|
T Consensus        11 ~l~v~--dl~~a~~FY~~~lG~~~~~~   35 (121)
T cd09013          11 ELLTP--KPEESLWFFTDVLGLEETGR   35 (121)
T ss_pred             EEEeC--CHHHHHHHHHhCcCCEEEee
Confidence            47775  79999999999999998876

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C

>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase

Probab=94.92  E-value=0.042  Score=39.07  Aligned_cols=31  Identities=16%  Similarity=0.188  Sum_probs=26.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      |.|+  |-+++++||+++||.+...++..++|+
T Consensus       151 l~V~--Dl~~s~~FY~~~LG~~~~~~~~~~~~~  181 (303)
T TIGR03211       151 LYGE--DVAENTRFFTEVLGFRLTEQVVLGDGK  181 (303)
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEeeEEcCCCc
Confidence            7775  799999999999999988887666654

Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.

>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=94.82  E-value=0.03  Score=34.51  Aligned_cols=25  Identities=12%  Similarity=-0.012  Sum_probs=21.6

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |-.++++||+++||.+...|
T Consensus         7 ~l~v~--Dl~~s~~FY~~~LG~~~~~~   31 (120)
T cd07252           7 GVESS--DLDAWRRFATDVLGLQVGDR   31 (120)
T ss_pred             EEEeC--CHHHHHHHHHhccCceeccC
Confidence            47886  79999999999999988755

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-

>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase

Probab=94.69  E-value=0.056  Score=32.93  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.2

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |-.++++||+++||.+...+.
T Consensus         9 ~l~v~--Dl~~s~~FY~~~lG~~~~~~~   34 (122)
T cd07265           9 QLRVL--DLEEAIKHYREVLGLDEVGRD   34 (122)
T ss_pred             EEEeC--CHHHHHHHHHhccCCEeeeec
Confidence            47886  799999999999999877663

This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do

>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=94.68  E-value=0.044  Score=31.43  Aligned_cols=28  Identities=29%  Similarity=0.199  Sum_probs=22.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      |.|.  |-.++++||++.||.+.+.+...+
T Consensus         6 l~v~--d~~~~~~FY~~~lG~~~~~~~~~~   33 (114)
T cd07245           6 LRVP--DLEASRAFYTDVLGLEEGPRPPFL   33 (114)
T ss_pred             EecC--CHHHHHHHHHHccCCcccCcCCCC
Confidence            5564  799999999999999877664433

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.

>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins

Probab=94.56  E-value=0.055  Score=32.45  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+.+.+
T Consensus         8 ~l~v~--d~~~s~~FY~~~lG~~~~~~   32 (120)
T cd08362           8 GLGVP--DLAAAAAFYREVWGLSVVAE   32 (120)
T ss_pred             EEecC--CHHHHHHHHHhCcCcEEEEe
Confidence            46775  79999999999999987754

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge

>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain

Probab=94.49  E-value=0.075  Score=31.51  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+...+
T Consensus         7 ~l~v~--d~~~~~~FY~~~lg~~~~~~   31 (117)
T cd07240           7 ELEVP--DLERALEFYTDVLGLTVLDR   31 (117)
T ss_pred             EEecC--CHHHHHHHHHhccCcEEEee
Confidence            35665  79999999999999988765

This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa

>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1

Probab=94.45  E-value=0.083  Score=32.58  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |.+++++||+++||.+...+.
T Consensus         6 ~l~v~--D~~~s~~FY~~~lG~~~~~~~   31 (134)
T cd08348           6 VLYVR--DLEAMVRFYRDVLGFTVTDRG   31 (134)
T ss_pred             EEEec--CHHHHHHHHHHhcCCEEEeec
Confidence            36665  799999999999999877653

13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are

>PLN02300 lactoylglutathione lyase

Probab=94.39  E-value=0.071  Score=38.32  Aligned_cols=30  Identities=13%  Similarity=0.228  Sum_probs=24.3

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      .|.|+  |..++++||+++||.+.+.|...++
T Consensus        29 ~l~V~--Dle~s~~FY~~vLG~~~~~~~~~~~   58 (286)
T PLN02300         29 VYRVG--DLDRTIKFYTECLGMKLLRKRDIPE   58 (286)
T ss_pred             EEEeC--CHHHHHHHHHHhcCCEEEEeeecCC
Confidence            47786  7999999999999999887654443

>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=94.24  E-value=0.037  Score=33.13  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-++|++||++.||.+...+
T Consensus         4 l~v~--d~~~a~~FY~~~lg~~~~~~   27 (114)
T cd07261           4 LYVE--DPAASAEFYSELLGREPVEL   27 (114)
T ss_pred             EEEC--CHHHHHHHHHHHcCCCccCC
Confidence            6775  79999999999999886643

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=94.03  E-value=0.094  Score=36.94  Aligned_cols=31  Identities=13%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      |.|+  |-+++++||+++||.+...|..+++|+
T Consensus       142 l~v~--dl~~a~~Fy~~~lG~~~~~~~~~~~~~  172 (294)
T TIGR02295       142 VFVP--DVQRALRFYKEELGFRVTEYTEDDEGN  172 (294)
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEEEeccCCCc
Confidence            6775  799999999999999988776655553

The enzyme from Bacillus brevis contains manganese.

>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp

Probab=93.96  E-value=0.082  Score=33.33  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |.+++++||+++||.+.+.+.
T Consensus         9 l~v~--dl~~s~~FY~~vlGl~~~~~~   33 (134)
T cd08360           9 LFVP--DVEAAEAFYRDRLGFRVSDRF   33 (134)
T ss_pred             EEcC--CHHHHHHHHHHhcCCEEEEEe
Confidence            6775  799999999999999876653

NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=93.95  E-value=0.061  Score=33.58  Aligned_cols=26  Identities=15%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      .|.|+  |.+++++||++ ||.+...+..
T Consensus         8 ~i~v~--Dl~~s~~FY~~-LG~~~~~~~~   33 (142)
T cd08353           8 GIVVR--DLEAAIAFFLE-LGLELEGRAE   33 (142)
T ss_pred             EEEeC--CHHHHHHHHHH-cCCEEccccc
Confidence            37786  79999999998 9998765543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains

Probab=93.84  E-value=0.063  Score=32.04  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||++.||.+...+
T Consensus         5 ~l~v~--d~~~s~~FY~~~lG~~~~~~   29 (114)
T cd07247           5 ELPTT--DPERAKAFYGAVFGWTFEDM   29 (114)
T ss_pred             EeeCC--CHHHHHHHHHhccCceeeec
Confidence            46775  79999999999999977643

SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep

>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive

Probab=93.77  E-value=0.15  Score=31.29  Aligned_cols=24  Identities=33%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |.+++++||+++||.+...+
T Consensus         7 l~v~--d~~~~~~FY~~vLG~~~~~~   30 (121)
T cd07244           7 LAVS--DLERSVAFYVDLLGFKLHVR   30 (121)
T ss_pred             EEEC--CHHHHHHHHHHhcCCEEEEe
Confidence            5664  79999999999999987654

This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins

Probab=93.70  E-value=0.096  Score=29.31  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      +.++  |.+++++||++.||.+......
T Consensus         4 i~~~--d~~~~~~fy~~~lg~~~~~~~~   29 (112)
T cd06587           4 LTVS--DLEAAVAFYEEVLGFEVLFRNG   29 (112)
T ss_pred             eeeC--CHHHHHHHHHhccCCEEEEeec
Confidence            4554  7999999999999998877654

This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas

>PRK04101 fosfomycin resistance protein FosB; Provisional

Probab=93.67  E-value=0.097  Score=33.27  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.6

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |-.++++||++.||.+.+.|
T Consensus         9 ~L~v~--Dl~~s~~FY~~~lG~~~~~~   33 (139)
T PRK04101          9 CFSVS--NLEKSIEFYEKVLGAKLLVK   33 (139)
T ss_pred             EEEec--CHHHHHHHHHhccCCEEEee
Confidence            47775  79999999999999988755

>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=93.61  E-value=0.1  Score=31.45  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|.  |.+++++||++.||.+...+
T Consensus         7 ~l~v~--d~~~~~~Fy~~~lG~~~~~~   31 (125)
T cd07255           7 TLRVA--DLERSLAFYQDVLGLEVLER   31 (125)
T ss_pred             EEEEC--CHHHHHHHHHhccCcEEEEc
Confidence            36775  79999999999999988765

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1

Probab=93.57  E-value=0.11  Score=32.77  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-+++++||+++||..++.|
T Consensus        10 l~V~--dl~~s~~FY~~~lG~~~~~~   33 (131)
T cd08364          10 LIVK--DLNKTTAFLQNIFNAREVYS   33 (131)
T ss_pred             EEeC--CHHHHHHHHHHHhCCeeEEe
Confidence            6775  79999999999999988766

This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=93.42  E-value=0.19  Score=30.52  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             EEEEecCChhHHHHHHHHhh---CcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAF---GAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AF---GA~Ev~Rl   43 (71)
                      .+.|.  |..++++||++.|   |-+++.+.
T Consensus         6 ~i~v~--d~~~~~~Fy~~~l~~~G~~~~~~~   34 (128)
T cd07242           6 ELTVR--DLERSRAFYDWLLGLLGFEEVKEW   34 (128)
T ss_pred             EEEeC--CHHHHHHHHHHHHhhcCCEEEEee
Confidence            35664  7999999999999   99988764

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE)

Probab=93.35  E-value=0.081  Score=31.60  Aligned_cols=28  Identities=14%  Similarity=0.266  Sum_probs=23.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      |.|+  |..++.+||++.||.+...+.+.+
T Consensus         6 l~v~--d~~~~~~fy~~~lG~~~~~~~~~~   33 (128)
T cd07249           6 IAVP--DLEAAIKFYRDVLGVGPWEEEEVP   33 (128)
T ss_pred             EEeC--CHHHHHHHHHHhhCCCCccccccC
Confidence            6775  799999999999999998765543

MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.

>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases

Probab=93.34  E-value=0.13  Score=30.99  Aligned_cols=25  Identities=32%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |-+++++||+++||.+...+
T Consensus         9 ~l~v~--d~~~~~~Fy~~~lG~~~~~~   33 (121)
T cd07266           9 ELRVT--DLEKSREFYVDVLGLVETEE   33 (121)
T ss_pred             EEEcC--CHHHHHHHHHhccCCEEecc
Confidence            36775  79999999999999987644

This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ

>cd07235 MRD Mitomycin C resistance protein (MRD)

Probab=93.33  E-value=0.085  Score=31.92  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=18.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEE
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      |.|+  |-.+|++||++ ||.+...
T Consensus         6 l~V~--D~~~a~~FY~~-LGf~~~~   27 (122)
T cd07235           6 IVVA--DMAKSLDFYRR-LGFDFPE   27 (122)
T ss_pred             EEec--cHHHHHHHHHH-hCceecC
Confidence            7786  79999999975 9997653

Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.

>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins

Probab=93.26  E-value=0.11  Score=33.94  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-+++++||+++||.++..+
T Consensus        10 i~V~--Dle~s~~FY~~~LG~~~~~~   33 (144)
T cd07239          10 LNSP--DVDKTVAFYEDVLGFRVSDW   33 (144)
T ss_pred             EECC--CHHHHHHHHHhcCCCEEEEe
Confidence            6675  79999999999999988755

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio

>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=92.77  E-value=0.19  Score=32.96  Aligned_cols=26  Identities=15%  Similarity=0.118  Sum_probs=21.9

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |-.++++||+++||.+...+.
T Consensus        14 ~l~v~--Dl~~a~~FY~~~LGl~~~~~~   39 (154)
T cd07237          14 VLATP--DPDEAHAFYRDVLGFRLSDEI   39 (154)
T ss_pred             EEEeC--CHHHHHHHHHHccCCEEEEEE
Confidence            37786  799999999999999877653

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi

>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=92.28  E-value=0.22  Score=33.17  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=21.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |..++.+||++.||.+...+.
T Consensus         7 i~V~--Dle~s~~FY~~~LG~~~~~~~   31 (157)
T cd08347           7 LTVR--DPEATAAFLTDVLGFREVGEE   31 (157)
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEeee
Confidence            6775  799999999999999887764

The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]

Probab=92.24  E-value=0.11  Score=35.54  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=18.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEE
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEI   40 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev   40 (71)
                      |.++  |-++|++||.++||=+--
T Consensus        15 i~~~--D~~ra~~FY~~vFgW~~~   36 (127)
T COG3324          15 LPVS--DLERAKAFYEKVFGWTFE   36 (127)
T ss_pred             eecC--CHHHHHHHHHHhhCceec
Confidence            4565  799999999999998654

>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin

Probab=92.19  E-value=0.19  Score=31.81  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEE
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      |.|+  |-+++++||+++||.+...
T Consensus         6 l~V~--Dl~~a~~FY~~~LG~~~~~   28 (131)
T cd08363           6 FSVS--NLDKSISFYKHVFMEKLLV   28 (131)
T ss_pred             EEEC--CHHHHHHHHHHhhCCEEec
Confidence            5665  7999999999999997654

This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases

>PLN02300 lactoylglutathione lyase

Probab=92.00  E-value=0.26  Score=35.45  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=24.9

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      .|.+.  |..++++||+++||-+...+...|++
T Consensus       159 ~l~~~--d~~~a~~Fy~~~lg~~~~~~~~~~~~  189 (286)
T PLN02300        159 MLRVG--DLDRSIKFYEKAFGMKLLRKRDNPEY  189 (286)
T ss_pred             EEEeC--CHHHHHHHHHhccCCEEEeeeccccc
Confidence            46775  79999999999999998766655553

>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=91.93  E-value=0.21  Score=31.13  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=21.0

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-.++++||++++|.+...|
T Consensus        12 l~v~--d~~~s~~FY~~vLG~~~~~~   35 (124)
T cd08361          12 LGTR--DLAGATRFATDILGLQVAER   35 (124)
T ss_pred             EeeC--CHHHHHHHHHhccCceeccC
Confidence            6775  79999999999999988766

This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)

Probab=91.25  E-value=0.26  Score=34.05  Aligned_cols=31  Identities=16%  Similarity=0.051  Sum_probs=23.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      +.|...|-.++++||+++||.+...+...++
T Consensus         9 i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~   39 (191)
T cd07250           9 GNVPDGEMDSWVDFYRKVLGFHRFWSFDIED   39 (191)
T ss_pred             eecChhHHHHHHHHHHHhhCCceeeEEccCc
Confidence            4553126999999999999999887765443

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,

>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase

Probab=91.14  E-value=0.31  Score=34.63  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |-.++++||+++||.+.+.|
T Consensus         9 ~l~V~--Dle~s~~FY~~~LG~~~~~~   33 (303)
T TIGR03211         9 ELRVL--DLEESLKHYTDVLGLEETGR   33 (303)
T ss_pred             EEEeC--CHHHHHHHHHHhcCCEEeee
Confidence            47775  79999999999999988765

Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.

>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=91.13  E-value=0.32  Score=31.86  Aligned_cols=25  Identities=16%  Similarity=-0.072  Sum_probs=21.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |-.++++||+++||-++..|.
T Consensus         5 l~V~--Dle~s~~Fy~~vLG~~~~~~~   29 (141)
T cd07258           5 IGSE--NFEASRDSLVEDFGFRVSDLI   29 (141)
T ss_pred             EecC--CHHHHHHHHHhcCCCEeeeee
Confidence            6675  799999999999999988774

This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=89.99  E-value=0.49  Score=33.31  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      ..|.|+  |.+++++||+++||.+.+.+
T Consensus         8 v~l~v~--Dl~~s~~FY~~vLGl~~~~~   33 (294)
T TIGR02295         8 VELRVT--DLDKSREFYVDLLGFRETES   33 (294)
T ss_pred             EEEEeC--CHHHHHHHHHHccCCEEEEe
Confidence            347886  79999999999999998765

The enzyme from Bacillus brevis contains manganese.

>PRK06724 hypothetical protein; Provisional

Probab=88.90  E-value=0.77  Score=29.64  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=18.1

Q ss_pred             EEEecCChhHHHHHHHHhh---CcEEE
Q 047456           17 LLVEASKATGSVQFYEIAF---GAVEI   40 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AF---GA~Ev   40 (71)
                      |.|+  |-+++++||+++|   |.++.
T Consensus        13 l~V~--Dle~s~~FY~~vlg~lg~~~~   37 (128)
T PRK06724         13 FWVA--NLEESISFYDMLFSIIGWRKL   37 (128)
T ss_pred             EEeC--CHHHHHHHHHHHHhhCCcEEe
Confidence            7786  7999999999987   55664

>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase

Probab=88.88  E-value=1.1  Score=33.41  Aligned_cols=32  Identities=16%  Similarity=0.351  Sum_probs=25.4

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      +.+.|+  |++++++||.+.||.+.+.+...+++
T Consensus         6 i~~~V~--D~~~a~~~y~~~LGf~~~~~~~~~~~   37 (353)
T TIGR01263         6 VEFYVG--DAKQAAYYYFTRFGFEKVAKETGHRE   37 (353)
T ss_pred             EEEEeC--CHHHHHHHHHHhcCCcEEEEeecCCc
Confidence            457886  79999999999999999887433333

This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.

>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase

Probab=88.01  E-value=0.77  Score=32.56  Aligned_cols=27  Identities=19%  Similarity=0.150  Sum_probs=22.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      .|.|.  |-+++++||.+.||.+...++.
T Consensus       147 ~l~v~--Dle~s~~FY~~~LGf~~~~~~~  173 (286)
T TIGR03213       147 VLRVP--DVDAALAFYTEVLGFQLSDVID  173 (286)
T ss_pred             EEEcC--CHHHHHHHHHHccCCeEEEeEc
Confidence            36775  7999999999999999877653

Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.

>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins

Probab=86.54  E-value=1  Score=27.19  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=18.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|.  |-+++.+||+ .||.++..+
T Consensus         8 l~v~--d~~~s~~FY~-~lG~~~~~~   30 (112)
T cd08344           8 LEVP--DLEVARRFYE-AFGLDVREE   30 (112)
T ss_pred             EecC--CHHHHHHHHH-HhCCcEEee
Confidence            5664  7999999998 699988654

This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase

Probab=86.53  E-value=0.53  Score=33.37  Aligned_cols=24  Identities=17%  Similarity=0.155  Sum_probs=20.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-+++++||.++||.+++.+
T Consensus         9 l~V~--Dl~~s~~FY~~~LGl~~~~~   32 (286)
T TIGR03213         9 IGVS--DVDAWREFATEVLGMMVASE   32 (286)
T ss_pred             EEeC--CHHHHHHHHHhccCcccccC
Confidence            7786  79999999999999988754

Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.

>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase

Probab=86.30  E-value=1.6  Score=26.46  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=19.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-+++.+||++ +|-++..|
T Consensus         9 l~v~--Dl~~s~~FY~~-lGl~~~~~   31 (113)
T cd07267           9 FEHP--DLDKAERFLTD-FGLEVAAR   31 (113)
T ss_pred             EccC--CHHHHHHHHHH-cCCEEEEe
Confidence            6675  79999999999 99988766

This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase

Probab=83.17  E-value=1.3  Score=33.13  Aligned_cols=26  Identities=31%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      +.|...|..++++||+++||.+++.+
T Consensus       164 i~V~~~dl~~~~~fY~~~lGf~~~~~  189 (353)
T TIGR01263       164 GNVYRGQMEPWAEFYEKIFGFREIRS  189 (353)
T ss_pred             cccCCccHHHHHHHHHHHhCCceeeE
Confidence            34532269999999999999988754

This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.

>COG0456 RimI Acetyltransferases [General function prediction only]

Probab=80.67  E-value=3.1  Score=26.42  Aligned_cols=28  Identities=14%  Similarity=0.176  Sum_probs=22.4

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      =.|.|+. +=..||.||++ +|.+++.+..
T Consensus       129 ~~L~V~~-~N~~Ai~lY~~-~GF~~~~~~~  156 (177)
T COG0456         129 IVLEVRE-SNEAAIGLYRK-LGFEVVKIRK  156 (177)
T ss_pred             EEEEEec-CChHHHHHHHH-cCCEEEeeeh
Confidence            4588883 66699999999 9999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
1xy7_A	166	X-Ray Structure Of Gene Product From Arabidopsis Th		6e-06

>pdb|1XY7|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At5g48480 Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCN 63
          F   K  LLVEA K   +V FY+ AFGA+E   ++  KRK +QEL   L  + N
Sbjct: 23 FTEFKQXLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELN 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
1xy7_A	166	Unknown protein; structural genomics, protein stru	6e-06

>1xy7_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G48480, reductively methylated protein, CATH 3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.9 PDB: 2q48_A Length = 166

 Score = 40.4 bits (94), Expect = 6e-06
 Identities = 21/48 (43%), Positives = 27/48 (56%)

Query: 5  ATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQ 52
           T   F   K  LLVEA K   +V FY+ AFGA+E   ++  KRK +Q
Sbjct: 18 ETHLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQ 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
3oms_A	138	PHNB protein; structural genomics, PSI-2, protein	99.48
3l20_A	172	Putative uncharacterized protein; hypothetical pro	99.3
1u69_A	163	Hypothetical protein; structural genomics, MSCG, p	99.26
1tsj_A	139	Conserved hypothetical protein; structural genomic	99.09
1xy7_A	166	Unknown protein; structural genomics, protein stru	98.88
1u6l_A	149	Hypothetical protein; structural genomics, PSI, pr	98.86
1u7i_A	136	Hypothetical protein; structural genomics, PA1358,	98.78
3itw_A	137	Protein TIOX; bleomycin resistance fold, bisinterc	98.51
3fcd_A	134	Lyase, ORF125EGC139; lactoylglutathione lyase, YEC	98.0
3l7t_A	134	SMU.1112C, putative uncharacterized protein; metal	97.35
4hc5_A	133	Glyoxalase/bleomycin resistance protein/dioxygena;	97.34
2rk9_A	145	Glyoxalase/bleomycin resistance protein/dioxygena;	97.32
3rmu_A	134	Methylmalonyl-COA epimerase, mitochondrial; struct	97.15
1f9z_A	135	Glyoxalase I; beta-alpha-beta-BETA-beta motif, pro	97.12
3r6a_A	144	Uncharacterized protein; PSI biology, structural g	97.08
4g6x_A	155	Glyoxalase/bleomycin resistance protein/dioxygena;	97.07
1qto_A	122	Bleomycin-binding protein; arm-exchange, antibioti	97.07
2rk0_A	136	Glyoxalase/bleomycin resistance protein/dioxygena;	97.04
2p25_A	126	Glyoxalase family protein; structural genomics, MC	96.96
3oa4_A	161	Glyoxalase, BH1468 protein; structural genomics, p	96.96
2zw5_A	301	Bleomycin acetyltransferase; dimer, two domains; H	96.82
1jc4_A	148	Methylmalonyl-COA epimerase; vicinal oxygen chelat	96.77
1xrk_A	124	Bleomycin resistance protein; arm exchange, ligand	96.72
3m2o_A	164	Glyoxalase/bleomycin resistance protein; unknown f	96.67
3e5d_A	127	Putative glyoxalase I; structural genomics, joint	96.64
3vw9_A	187	Lactoylglutathione lyase; glyoxalase, lyase-lyase	96.64
3gm5_A	159	Lactoylglutathione lyase and related lyases; sheet	96.55
1ecs_A	126	Bleomycin resistance protein; arm-exchange, antibi	96.48
3bt3_A	148	Glyoxalase-related enzyme, ARAC type; VOC superfam	96.37
2c21_A	144	Trypanothione-dependent glyoxalase I; lyase, gluta	96.36
2za0_A	184	Glyoxalase I; lyase, lactoylglutathione lyase, met	96.1
2rbb_A	141	Glyoxalase/bleomycin resistance protein/dioxygena;	96.01
3ey7_A	133	Biphenyl-2,3-DIOL 1,2-dioxygenase III-related prot	95.9
2pjs_A	119	AGR_C_3564P, uncharacterized protein ATU1953; glyo	95.85
2qnt_A	141	AGR_C_3434P, uncharacterized protein ATU1872; glyo	95.82
3ghj_A	141	Putative integron gene cassette protein; integron	95.77
3huh_A	152	Virulence protein STM3117; structural genomics, ny	95.74
1xqa_A	113	Glyoxalase/bleomycin resistance protein; dioxygena	95.62
2p7o_A	133	Glyoxalase family protein; fosfomycin resistance p	95.58
1r9c_A	139	Glutathione transferase; fosfomycin resistance pro	95.56
3kol_A	156	Oxidoreductase, glyoxalase/bleomycin resistance pr	95.53
3bqx_A	150	Glyoxalase-related enzyme; VOC superfamily, PSI-2,	95.42
1twu_A	139	Hypothetical protein YYCE; structural genomics, pr	95.41
2i7r_A	118	Conserved domain protein; structural genomics cons	95.41
3hdp_A	133	Glyoxalase-I; glutathione,lyase, methylglyoxal,110	95.39
2kjz_A	144	ATC0852; protein of unknown function, dimer, struc	95.31
3sk2_A	132	EHPR; antibiotic resistance, griseoluteate-binding	95.29
3r4q_A	160	Lactoylglutathione lyase; structural genomics, PSI	95.24
3zw5_A	147	Glyoxalase domain-containing protein 5; lyase; 1.6	95.17
3rhe_A	148	NAD-dependent benzaldehyde dehydrogenase; structur	95.16
3zi1_A	330	Glyoxalase domain-containing protein 4; isomerase;	95.05
2qqz_A	126	Glyoxalase family protein, putative; alpha-beta st	95.02
1nki_A	135	Probable fosfomycin resistance protein; potassium	95.02
1npb_A	141	Fosfomycin-resistance protein; manganese binding,	94.96
3uh9_A	145	Metallothiol transferase FOSB 2; structural genomi	94.95
2r6u_A	148	Uncharacterized protein; structural genomics, PSI-	94.92
1ss4_A	153	Glyoxalase family protein; structural genomics, PS	94.92
3rri_A	135	Glyoxalase/bleomycin resistance protein/dioxygena;	94.9
3g12_A	128	Putative lactoylglutathione lyase; glyoxalase, ble	94.63
2a4x_A	138	Mitomycin-binding protein; ALFA/beta protein, mito	94.49
3ct8_A	146	Protein BH2160, putative glyoxalase; NP_243026.1,	94.13
1mpy_A	307	Catechol 2,3-dioxygenase; extradiol dioxygenase, n	93.88
3zi1_A	330	Glyoxalase domain-containing protein 4; isomerase;	93.69
1kw3_B	292	2,3-dihydroxybiphenyl dioxygenase; four TIME repet	93.28
1zsw_A	338	Metallo protein, glyoxalase family protein; hypoth	93.15
3oxh_A	282	RV0577 protein; kinase regulation, antibiotic resi	93.05
1mpy_A	307	Catechol 2,3-dioxygenase; extradiol dioxygenase, n	92.76
3hpy_A	309	Catechol 2,3-dioxygenase; repeated motifs, aromati	92.72
3lm4_A	339	Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein	92.71
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	92.52
3oxh_A	282	RV0577 protein; kinase regulation, antibiotic resi	92.52
2zyq_A	300	Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; e	92.5
1f1u_A	323	Homoprotocatechuate 2,3-dioxygenase; extradiol, ma	92.45
3hpy_A	309	Catechol 2,3-dioxygenase; repeated motifs, aromati	92.39
1kw3_B	292	2,3-dihydroxybiphenyl dioxygenase; four TIME repet	92.32
1lgt_A	297	Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxy	91.79
3oaj_A	335	Putative ring-cleaving dioxygenase MHQO; structura	91.64
2ehz_A	302	1,2-dihydroxynaphthalene dioxygenase; extradiol di	91.52
1lgt_A	297	Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxy	91.16
4gym_A	149	Glyoxalase/bleomycin resistance protein/dioxygena;	91.13
1zsw_A	338	Metallo protein, glyoxalase family protein; hypoth	90.68
3b59_A	310	Glyoxalase/bleomycin resistance protein/dioxygena;	90.68
2zyq_A	300	Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; e	90.62
3lm4_A	339	Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein	90.59
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	90.55
1f1u_A	323	Homoprotocatechuate 2,3-dioxygenase; extradiol, ma	90.46
1t47_A	381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	90.41
4ghg_A	365	Homoprotocatechuate 2,3-dioxygenase; oxygen activa	90.1
3b59_A	310	Glyoxalase/bleomycin resistance protein/dioxygena;	89.89
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	88.95
3pkv_A	252	Toxoflavin lyase (TFLA); metalloenzyme, vicinal ox	88.87
2ehz_A	302	1,2-dihydroxynaphthalene dioxygenase; extradiol di	88.82
4h89_A	173	GCN5-related N-acetyltransferase; N-acyltransferas	88.73
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	88.62
2wl9_A	305	Catechol 2,3-dioxygenase; aromatic hydrocarbons ca	88.14
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	88.1
2wl9_A	305	Catechol 2,3-dioxygenase; aromatic hydrocarbons ca	87.51
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	86.07
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	84.71
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	84.25
3oaj_A	335	Putative ring-cleaving dioxygenase MHQO; structura	83.69
3e0r_A	244	C3-degrading proteinase (CPPA protein); MCSG, PSI,	81.83
1cjx_A	357	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	80.05

>3oms_A PHNB protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, methyltransferase, GL family; 1.90A {Bacillus cereus} SCOP: d.32.1.0

Probab=99.48  E-value=2.8e-14  Score=93.36  Aligned_cols=57  Identities=19%  Similarity=0.200  Sum_probs=41.8

Q ss_pred             ceecccccceeEEEEecCChhHHHHHHHHhhCcEEEEee-------cCCCcchhccccceeeceeccccccc
Q 047456            5 ATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRN-------METKRKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus         5 ~~~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl-------~~PdGk~~~~~~~v~hael~~g~~~~   69 (71)
                      |.+-++++|+|||.+++ ++.+||+||+++||+.++.++       ++++|+       |+|++|++|...+
T Consensus         3 ~m~~~~~~i~P~L~f~g-~a~eA~~FY~~vFg~~~i~~~~~~~~~~~~~~g~-------v~ha~l~i~g~~l   66 (138)
T 3oms_A            3 AMSNANQKITTFLMFEG-KAEEAMNFYTSLFDQSEIVSISRYDENGPGKEGT-------VIHATFTLNGQEF   66 (138)
T ss_dssp             ------CCCCEEEEESS-CHHHHHHHHHTTSTTCCEEEEEECCTTCSSCTTS-------EEEEEEEETTEEE
T ss_pred             ccccccccEEEEEEECC-CHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCc-------EEEEEEEECCEEE
Confidence            44567899999999984 799999999999996666554       334554       9999999987654

>3l20_A Putative uncharacterized protein; hypothetical protein, unknown function; 2.45A {Staphylococcus aureus}

Probab=99.30  E-value=2.3e-12  Score=88.30  Aligned_cols=58  Identities=17%  Similarity=0.354  Sum_probs=44.2

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchh-----cc--ccceeeceeccccccc
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAE-----QE--LNSRLPKDCNTTLAQL   69 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~-----~~--~~~v~hael~~g~~~~   69 (71)
                      +.+|+|||.++  ++++||+||+++||++++.|++..+...+     ++  --.|+||+|++|...+
T Consensus        24 m~~i~PyL~f~--~a~eAi~FY~~vFG~~~~~~~~~~d~p~~~~~~~~~~~~g~v~hael~i~g~~l   88 (172)
T 3l20_A           24 MTALFPYIAFE--NSKEALAYYEEVFGATDVKRLEVGEEQASHFGMTKEEAQEATMHAEFEVLGVKV   88 (172)
T ss_dssp             CCEEEEEEEES--CHHHHHHHHHHHSCCEEEEEEECCTTTTTTTTCCHHHHHTCEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEC--CHHHHHHHHHHHcCCEEEEEEEcccCCcccccCCcccCCCcEEEEEEEECCEEE
Confidence            34799999997  89999999999999999988765321110     00  1259999999997654

>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=99.26  E-value=7.5e-12  Score=85.46  Aligned_cols=59  Identities=10%  Similarity=0.033  Sum_probs=42.0

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhh-CcEEEEeecCCCcchhccccceeeceeccccccc
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAF-GAVEISRNMETKRKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AF-GA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~~~   69 (71)
                      +++|+|||.+++ +|.+||+||+++| |+++..++..++.....+=..|+||+|++|...+
T Consensus         4 M~~i~PyL~f~g-~a~eAi~FY~~vF~ga~i~~~~~~~~~~~~~~~g~Vmhael~i~g~~~   63 (163)
T 1u69_A            4 NSKNTICLWYDS-AALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVMGIPC   63 (163)
T ss_dssp             -CCEEEEEEESS-CHHHHHHHHHHHSTTEEEEEEEECSSCBTTBCTTSEEEEEEEETTEEE
T ss_pred             CCceeEEEEECC-CHHHHHHHHHHHhCCCEEeEEEeccCCCCCCCCCeEEEEEEEECCEEE
Confidence            458999999985 8999999999999 9998864332221100000259999999987654

>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7

Probab=99.09  E-value=1.3e-10  Score=75.43  Aligned_cols=57  Identities=11%  Similarity=0.063  Sum_probs=41.5

Q ss_pred             ccceeEEEEecCChhHHHHHHHHhh-CcEEEEeecCCCcchhccccceeeceeccccccc
Q 047456           11 MGMKPQLLVEASKATGSVQFYEIAF-GAVEISRNMETKRKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        11 ~tvtP~LvV~~~~Aa~AI~FYk~AF-GA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~~~   69 (71)
                      .+|+|||.+++ |+++||+||+++| |+++.+++.-++...+.+ ..|+|++|++|..++
T Consensus         4 ~~i~p~l~~~~-d~~eA~~FY~~~f~G~~~~~~~~~~~~~~~~~-~~v~ha~l~~~~~~~   61 (139)
T 1tsj_A            4 PKITTFLMFNN-QAEEAVKLYTSLFEDSEIITMAKYGENGPGDP-GTVQHSIFTLNGQVF   61 (139)
T ss_dssp             CSEEEEEECSS-CHHHHHHHHHHHSSSCEEEEEEECC-----CT-TSEEEEEEEETTEEE
T ss_pred             CceeEEEEECC-CHHHHHHHHHHHcCCCEEEEEEecCcCCCCCC-CcEEEEEEEECCEEE
Confidence            47899999984 8999999999999 999987654332110001 259999999987643

>1xy7_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G48480, reductively methylated protein, CATH 3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.9 PDB: 2q48_A

Probab=98.88  E-value=1.4e-09  Score=70.94  Aligned_cols=58  Identities=33%  Similarity=0.432  Sum_probs=39.2

Q ss_pred             CceecccccceeEEEEecCChhHHHHHHHHhhCcEEEEeec-------CCCcchhccccceeeceecccccc
Q 047456            4 PATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNM-------ETKRKAEQELNSRLPKDCNTTLAQ   68 (71)
Q Consensus         4 ~~~~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~-------~PdGk~~~~~~~v~hael~~g~~~   68 (71)
                      .+..+++.++.|+|.|+|.+..+|++||+++||.+...+..       +++|       .+.|+++++|...
T Consensus        17 ~~~~~~~~~i~~~L~v~D~~~~~A~~FY~~vfG~~~~~~~~~~~~~~~~~~~-------~~~~a~l~~~g~~   81 (166)
T 1xy7_A           17 VETHLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELP-------HVLSSELNLAGSS   81 (166)
T ss_dssp             ---CCCEEEEEEEEEECTTCHHHHHHHHHHHHCCEEC----------------------CCCEEEEEETTEE
T ss_pred             ccCCCCCceEEEEEEECCcCHHHHHHHHHHHhCCEEEEEEccCCCCCCCCCC-------cEEEEEEEECCeE
Confidence            45678899999999997223999999999999999886652       2233       3678888776543

>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=98.86  E-value=4.7e-09  Score=67.16  Aligned_cols=56  Identities=7%  Similarity=0.027  Sum_probs=39.3

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcch----hcc-ccceeeceecccccc
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKA----EQE-LNSRLPKDCNTTLAQ   68 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~----~~~-~~~v~hael~~g~~~   68 (71)
                      .++|+|.|++ |+++|++||+++||++...++.-++...    ..+ -..++|++|+++...
T Consensus         4 ~~~p~L~v~~-d~~~A~~FY~~vfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~   64 (149)
T 1u6l_A            4 QIVPYLIFNG-NCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSFA   64 (149)
T ss_dssp             EEEEEEEESS-CHHHHHHHHHHHHCSEEEEEEESTTTTC----CCSSCCCEEEEEEEETTEE
T ss_pred             eEEEEEEECC-CHHHHHHHHHHHhCCEEEEEEEcccCCcccCCCcccCCcEEEEEEEECCEE
Confidence            4889999972 7999999999999999887653222100    000 024899999887654

>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=98.78  E-value=1.3e-08  Score=63.69  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=39.2

Q ss_pred             ccceeEEEEecCChhHHHHHHHHhh-CcEEEEeecCCCcchhccccceeeceecccccc
Q 047456           11 MGMKPQLLVEASKATGSVQFYEIAF-GAVEISRNMETKRKAEQELNSRLPKDCNTTLAQ   68 (71)
Q Consensus        11 ~tvtP~LvV~~~~Aa~AI~FYk~AF-GA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~~   68 (71)
                      ..++|+|.|++.|+++|++||+++| |.+....+..+++..+.+ ..++|+++.++...
T Consensus         5 ~~i~~~L~v~~~d~~~A~~FY~~~f~G~~~~~~~~~~~~~~~~~-~~~~~a~~~~~g~~   62 (136)
T 1u7i_A            5 ARVRPFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPE-GSVLKALFRLGDQS   62 (136)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHHHHCSSEEEEEEEECCTTCSSCT-TSEEEEEEEETTEE
T ss_pred             ccceEEEEECCCCHHHHHHHHHHHcCCCEeeEEEEcccCCCCCC-CcEEEEEEEECCEE
Confidence            4688999997226999999999999 998875322222100001 25899999887654

>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}

Probab=98.51  E-value=1.6e-07  Score=56.96  Aligned_cols=47  Identities=17%  Similarity=0.080  Sum_probs=38.2

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhccccceeeceecccccc
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQ   68 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~~   68 (71)
                      .+.+.|.|+  |.+++++||+++||.+...+.+++ |+       +.|++++.|...
T Consensus         3 ~~~i~l~v~--D~~~a~~FY~~~lG~~~~~~~~~~-g~-------~~~~~l~~~~~~   49 (137)
T 3itw_A            3 HMVVELAYT--DPDRAVDWLVRVFGFRLLLRQPAI-GT-------IRHADLDTGGGI   49 (137)
T ss_dssp             CCEEEEEES--CHHHHHHHHHHHHCCEEEEEESSS-SS-------CSEEEEECSSSE
T ss_pred             eEEEEEEEC--CHHHHHHHHHHccCCEEEEEecCC-Cc-------EEEEEEecCCeE
Confidence            578999997  799999999999999999888766 54       567777666543

>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.92A {Uncultured bacterium} SCOP: d.32.1.0

Probab=98.00  E-value=5.6e-06  Score=50.55  Aligned_cols=34  Identities=12%  Similarity=0.208  Sum_probs=29.2

Q ss_pred             cccccceeEEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456            8 TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus         8 ~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      ..+..+.|.|.|+  |.++|++||+++||.+...+.
T Consensus         4 ~~~~~~~~~l~v~--D~~~a~~FY~~~LG~~~~~~~   37 (134)
T 3fcd_A            4 SDIHQITPFLHIP--DMQEALTLFCDTLGFELKYRH   37 (134)
T ss_dssp             --CCEEEEEEEES--CHHHHHHHHTTTTCCEEEEEE
T ss_pred             hhhhcceeEEEEC--CHHHHHHHHHhccCcEEEEeC
Confidence            3578899999997  799999999999999988763

>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}

Probab=97.35  E-value=0.00024  Score=41.15  Aligned_cols=30  Identities=33%  Similarity=0.422  Sum_probs=25.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      |.|+  |..++++||+++||.+...+...+++
T Consensus        11 l~v~--D~~~a~~FY~~~lG~~~~~~~~~~~~   40 (134)
T 3l7t_A           11 LIVS--DYDKSYEFYVNQLGFEVIRENHRPKR   40 (134)
T ss_dssp             EECS--CHHHHHHHHHHTSCCEEEEEEEETTT
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEEEeecCCC
Confidence            6775  79999999999999999988766654

>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}

Probab=97.34  E-value=0.00024  Score=41.55  Aligned_cols=31  Identities=16%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      .|.|+  |..++++||+++||.+...+...++|
T Consensus        18 ~l~v~--D~~~a~~FY~~~lG~~~~~~~~~~~~   48 (133)
T 4hc5_A           18 TIIVS--DQEKALDFYVNTLGFEKVFDNQLDPN   48 (133)
T ss_dssp             EEECS--CHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred             EEEEC--CHHHHHHHHHhCcCCcEeeecccCCC
Confidence            46775  79999999999999999887654333

>2rk9_A Glyoxalase/bleomycin resistance protein/dioxygena; NYSGXRC, structural genomics, protein structur initiative II; 1.60A {Vibrio splendidus}

Probab=97.32  E-value=0.00029  Score=43.04  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=27.7

Q ss_pred             ccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456            9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus         9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .+.++.|.|.|+  |..++++||+++||.+...+
T Consensus         3 ~~~~~~~~l~v~--Dl~~s~~FY~~~LG~~~~~~   34 (145)
T 2rk9_A            3 LTLRVVPELYCF--DINVSQSFFVDVLGFEVKYE   34 (145)
T ss_dssp             -CCCEEEEEEES--SHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccceEEEEEC--CHHHHHHHHHhccCCEEEee
Confidence            466889999997  79999999999999998754

>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0

Probab=97.15  E-value=0.00023  Score=41.21  Aligned_cols=29  Identities=17%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      |.|+  |.+++++||+++||.+...+...|+
T Consensus        11 l~v~--D~~~a~~FY~~~lG~~~~~~~~~~~   39 (134)
T 3rmu_A           11 IAVP--DLEKAAAFYKNILGAQVSEAVPLPE   39 (134)
T ss_dssp             EECS--CHHHHHHHHHHTSCCEECCCEEEGG
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEeEeeecCC
Confidence            6675  7999999999999999887665544

>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A

Probab=97.12  E-value=0.00091  Score=39.24  Aligned_cols=31  Identities=19%  Similarity=0.278  Sum_probs=25.9

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      .|.|+  |..++++||+++||.+...+...|+|
T Consensus         7 ~l~v~--D~~~a~~FY~~~lG~~~~~~~~~~~~   37 (135)
T 1f9z_A            7 MLRVG--DLQRSIDFYTKVLGMKLLRTSENPEY   37 (135)
T ss_dssp             EEECS--CHHHHHHHHHHTTCCEEEEEEEETTT
T ss_pred             EEEeC--CHHHHHHHHHhccCcEEEEecccCCC
Confidence            46775  79999999999999999887665655

>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}

Probab=97.08  E-value=0.00049  Score=43.26  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=30.2

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      ...+.+.|.|+  |.+++++||+++||.+...|...|++
T Consensus         5 i~~i~i~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~   41 (144)
T 3r6a_A            5 ILQILSRLYVA--DLNPALEFYEELLETPVAMRFEIPQT   41 (144)
T ss_dssp             EEEEEEEEEES--CHHHHHHHHHHHTTCCCCEECCCSCS
T ss_pred             EEEEEEEEEEC--CHHHHHHHHHHhcCCEEEEEeccCCc
Confidence            34566889997  79999999999999999888655543

>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}

Probab=97.07  E-value=0.00055  Score=42.60  Aligned_cols=30  Identities=13%  Similarity=0.174  Sum_probs=24.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      |.|+  |-++|++||+++||.+.+.+.+.+++
T Consensus        32 I~V~--Dle~A~~FY~dvLGf~v~~d~~~~~~   61 (155)
T 4g6x_A           32 VFVD--DQAKAESFYTGKLGFLVKADVPVGAD   61 (155)
T ss_dssp             EEES--CHHHHHHHHHHTTCCEEEEEEEETTE
T ss_pred             EEeC--CHHHHHHHHHHHhCCEEEEeecCCCc
Confidence            7887  79999999999999998776655443

>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A

Probab=97.07  E-value=0.00069  Score=40.35  Aligned_cols=31  Identities=23%  Similarity=0.331  Sum_probs=27.2

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      +..+.+.|.|+  |..++++||+++||.+...+
T Consensus         4 ~~~~~~~l~v~--D~~~a~~FY~~~LG~~~~~~   34 (122)
T 1qto_A            4 FLGAVPVLTAV--DVPANVSFWVDTLGFEKDFG   34 (122)
T ss_dssp             CCCCCCEEEES--SHHHHHHHHHHTTCCEEEEE
T ss_pred             ccceeEEEEcC--CHHHHHHHHHhccCcEEeeC
Confidence            45678899996  79999999999999998865

>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}

Probab=97.04  E-value=0.00088  Score=40.18  Aligned_cols=30  Identities=20%  Similarity=0.201  Sum_probs=25.0

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      .|.|+  |..++++||+++||.+...+..+++
T Consensus        10 ~l~v~--Dl~~a~~FY~~~lG~~~~~~~~~~~   39 (136)
T 2rk0_A           10 SLTVR--DLDISCRWYTEILDWKELVRGRGDT   39 (136)
T ss_dssp             EEECS--CHHHHHHHHHHHHCCEEEEEEECSS
T ss_pred             EEEeC--CHHHHHHHHHHhcCCEEEeeccCCC
Confidence            46775  7999999999999999988766554

>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}

Probab=96.96  E-value=0.00058  Score=39.39  Aligned_cols=29  Identities=14%  Similarity=0.206  Sum_probs=23.2

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      .|.|+  |..++++||+++||.+...+...+
T Consensus        10 ~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~   38 (126)
T 2p25_A           10 AINAS--NYQATKNFYVEKLGFEVLRENHRP   38 (126)
T ss_dssp             EEEES--CHHHHHHHHTTTTCCEEEEEEEEG
T ss_pred             EEEeC--CHHHHHHHHHHhcCCEEEeeccCC
Confidence            36775  799999999999999987664333

>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-biology, lyase; 1.94A {Bacillus halodurans}

Probab=96.96  E-value=0.00064  Score=42.56  Aligned_cols=29  Identities=10%  Similarity=0.077  Sum_probs=24.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      |.|+  |..++++||+++||.+...|...++
T Consensus        14 l~V~--Dl~~a~~FY~~~LG~~~~~~~~~~~   42 (161)
T 3oa4_A           14 IAVT--SIKDVLPFYVGSLKLKLLGMEDLPS   42 (161)
T ss_dssp             EECS--CHHHHHHHHHHTSCCEEEEEEEEGG
T ss_pred             EEEC--CHHHHHHHHHHccCCeEeeeeccCC
Confidence            6775  7999999999999999988755443

>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A {Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*

Probab=96.82  E-value=0.0017  Score=43.11  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      ...+.|+|.|+  |..+|++||+++||.+...+..++
T Consensus       182 ~~~~~~~l~v~--D~~~a~~FY~~~lG~~~~~~~~~~  216 (301)
T 2zw5_A          182 TLAVITELPVR--DVAATLRLVEAALGARTAFAIGDP  216 (301)
T ss_dssp             EEEEEEEEEES--CHHHHHHHHHHHSCCEEEEEEETT
T ss_pred             cceeEEEEEeC--CHHHHHHHHHHhcCCeEeeecCCC
Confidence            44678999996  799999999999999988665543

>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A

Probab=96.77  E-value=0.0021  Score=38.23  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=24.3

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      .|.|+  |..++++||+++||.+...+...++
T Consensus        14 ~l~v~--D~~~a~~FY~~~lG~~~~~~~~~~~   43 (148)
T 1jc4_A           14 AYACP--DADEASKYYQETFGWHELHREENPE   43 (148)
T ss_dssp             EEECS--CHHHHHHHHHHHHCCEEEEEEEETT
T ss_pred             EEEeC--CHHHHHHHHHHccCceeeecccCCC
Confidence            36775  7999999999999999987754443

>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A

Probab=96.72  E-value=0.0022  Score=38.24  Aligned_cols=31  Identities=16%  Similarity=0.280  Sum_probs=26.8

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      +..+.+.|.|+  |..++++||+++||.+...+
T Consensus         4 ~~~~~~~l~v~--D~~~a~~FY~~~lG~~~~~~   34 (124)
T 1xrk_A            4 LTSAVPVLTAR--DVAEAVEFWTDRLGFSRVFV   34 (124)
T ss_dssp             EEEEEEEEEES--CHHHHHHHHHHTTCCEEEEE
T ss_pred             ccceeEEEEcC--CHHHHHHHHHHccCceEEec
Confidence            45677889996  79999999999999998866

>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}

Probab=96.64  E-value=0.00082  Score=39.05  Aligned_cols=30  Identities=23%  Similarity=0.229  Sum_probs=24.4

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      .|.|+  |.+++++||+++||.+...+..+|+
T Consensus         8 ~l~v~--D~~~a~~FY~~~lG~~~~~~~~~~~   37 (127)
T 3e5d_A            8 ALWTT--NLEQMKQFYVTYFGATANDLYENKT   37 (127)
T ss_dssp             EEECS--SHHHHHHHHHHHHCCEECCCEEEGG
T ss_pred             EEEEC--CHHHHHHHHHHhcCCeeecccccCC
Confidence            46775  7999999999999999887755443

>3vw9_A Lactoylglutathione lyase; glyoxalase, lyase-lyase inhibitor complex; HET: EPE HPJ; 1.47A {Homo sapiens} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A* 2za0_A*

Probab=96.64  E-value=0.0031  Score=39.78  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             eeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           14 KPQLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        14 tP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      --.|.|+  |.+++++||+++||.+.+.+...+++
T Consensus        37 Hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~   69 (187)
T 3vw9_A           37 QTMLRVK--DPKKSLDFYTRVLGMTLIQKCDFPIM   69 (187)
T ss_dssp             EEEEECS--CHHHHHHHHHHTTCCEEEEEEEETTT
T ss_pred             EEEEEeC--CHHHHHHHHHHhcCcEEeeccccCCC
Confidence            3458886  79999999999999999988766554

>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis}

Probab=96.55  E-value=0.0014  Score=40.36  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=23.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      |.|+  |..++++||+++||.+++.|...+
T Consensus        25 i~V~--Dle~a~~FY~~~LG~~~~~~~~~~   52 (159)
T 3gm5_A           25 IVVR--DIEESLQNYAEFFGVEKPQWFWTD   52 (159)
T ss_dssp             EECS--CHHHHHHHHHHHTTCCCCCCEECC
T ss_pred             EEeC--CHHHHHHHHHHhhCCCCceEEecC
Confidence            6675  799999999999999988766554

>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A

Probab=96.48  E-value=0.0034  Score=37.35  Aligned_cols=29  Identities=24%  Similarity=0.301  Sum_probs=25.0

Q ss_pred             ccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           11 MGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        11 ~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      ..+.+.|.|+  |.+++++||++ ||.+...+
T Consensus         3 ~~~~~~l~v~--D~~~a~~FY~~-LG~~~~~~   31 (126)
T 1ecs_A            3 DQATPNLPSR--DFDSTAAFYER-LGFGIVFR   31 (126)
T ss_dssp             CEEEEEEEES--CHHHHHHHHHT-TTCEEEEE
T ss_pred             ccEEEEEEeC--CHHHHHHHHHH-CCCEEEec
Confidence            3577889996  79999999998 99998865

>3bt3_A Glyoxalase-related enzyme, ARAC type; VOC superfamily, PSI-2, NYSGXRC, structural genomics, prote structure initiative; 2.50A {Clostridium phytofermentans}

Probab=96.37  E-value=0.0057  Score=37.41  Aligned_cols=27  Identities=15%  Similarity=0.218  Sum_probs=23.4

Q ss_pred             ceeEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456           13 MKPQLLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      ..+.|.|+  |..++++||+++||.+...
T Consensus        23 ~hv~l~v~--D~~~a~~FY~~~LG~~~~~   49 (148)
T 3bt3_A           23 NGPVYFTK--DMDKTVKWFEEILGWSGDI   49 (148)
T ss_dssp             CCCEEEES--CHHHHHHHHHHTTCCEEEE
T ss_pred             eeEEEEEC--CHHHHHHHHHhccCCEEEe
Confidence            45778996  7999999999999999864

>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1

Probab=96.36  E-value=0.0026  Score=38.55  Aligned_cols=31  Identities=16%  Similarity=0.225  Sum_probs=25.4

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      .|.|+  |..++++||+++||.+...+...|+|
T Consensus        13 ~l~v~--D~~~a~~FY~~~lG~~~~~~~~~~~~   43 (144)
T 2c21_A           13 MIRVG--DLDRSIKFYTERLGMKVLRKWDVPED   43 (144)
T ss_dssp             EEECS--CHHHHHHHHHHTTCCEEEEEEEEGGG
T ss_pred             EEEeC--CHHHHHHHHHhcCCCEEEEeeecCCC
Confidence            46775  79999999999999999887655554

>2za0_A Glyoxalase I; lyase, lactoylglutathione lyase, methyl- gerfelin; HET: MGI; 1.70A {Mus musculus} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A*

Probab=96.10  E-value=0.007  Score=38.26  Aligned_cols=29  Identities=17%  Similarity=0.262  Sum_probs=24.2

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEeecC
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISRNME   45 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~   45 (71)
                      ..|.|+  |..++++||+++||.+...+...
T Consensus        35 v~l~v~--Dl~~a~~FY~~~LG~~~~~~~~~   63 (184)
T 2za0_A           35 TMLRIK--DPKKSLDFYTRVLGLTLLQKLDF   63 (184)
T ss_dssp             EEEECS--CHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEeC--CHHHHHHHHHHhcCCEEEEeccC
Confidence            457786  79999999999999999877543

>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}

Probab=96.01  E-value=0.004  Score=37.54  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=22.4

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      ..|.|+  |.+++++||+++||.+.+.+.
T Consensus        12 v~l~v~--D~~~a~~FY~~~lG~~~~~~~   38 (141)
T 2rbb_A           12 VNIFTR--DIVAMSAFYQQVFGFQEIESI   38 (141)
T ss_dssp             EEEECS--CHHHHHHHHHHHHCCEECGGG
T ss_pred             EEEEEC--CHHHHHHHHHHhcCCeeeccc
Confidence            347775  799999999999999887554

>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*

Probab=95.90  E-value=0.01  Score=34.44  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+...+
T Consensus        15 ~l~v~--D~~~a~~FY~~~lG~~~~~~   39 (133)
T 3ey7_A           15 VLTVA--DIPTTTNFYEKVLGMKAVSF   39 (133)
T ss_dssp             EEEES--CHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEEC--CHHHHHHHHHHccCceEEEe
Confidence            47775  79999999999999998865

>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953; glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; 1.85A {Agrobacterium tumefaciens str} SCOP: d.32.1.2

Probab=95.85  E-value=0.0044  Score=35.89  Aligned_cols=30  Identities=10%  Similarity=0.123  Sum_probs=24.3

Q ss_pred             ccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           11 MGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        11 ~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      ..+.+.|.|+  |.+++++||+++||.+...+
T Consensus         7 ~~i~v~l~v~--d~~~a~~FY~~~lG~~~~~~   36 (119)
T 2pjs_A            7 RRVVANIATP--EPARAQAFYGDILGMPVAMD   36 (119)
T ss_dssp             EEEEEEEECS--CGGGGHHHHTTTTCCCEEEE
T ss_pred             eEEEEEEEcC--CHHHHHHHHHHhcCCEEEec
Confidence            3445677886  79999999999999988754

>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin resistance protein/dioxygenase family R protein, PSI-2, MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens str}

Probab=95.82  E-value=0.0058  Score=36.46  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=23.3

Q ss_pred             eeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           14 KPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        14 tP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .+.|.|+  |.+++++||+++||.+...+
T Consensus        11 ~v~l~v~--D~~~a~~FY~~~LG~~~~~~   37 (141)
T 2qnt_A           11 NPIPFVR--DINRSKSFYRDRLGLKILED   37 (141)
T ss_dssp             CCCCEES--CHHHHHHHHHHTTCCCEEEE
T ss_pred             eEEEEEC--CHHHHHHHHHHhcCCEEEEE
Confidence            4568886  79999999999999998765

>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}

Probab=95.77  E-value=0.013  Score=35.78  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=22.7

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |-+++++||+++||.+...+.
T Consensus        33 ~l~v~--Dl~~a~~FY~~~LG~~~~~~~   58 (141)
T 3ghj_A           33 AVKVK--NLEKSSQFYTEILGFEAGLLD   58 (141)
T ss_dssp             EEEES--CHHHHHHHHHHTSCCEEEEEE
T ss_pred             EEEeC--CHHHHHHHHHHhcCCEEEEec
Confidence            37775  799999999999999998774

>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A

Probab=95.74  E-value=0.011  Score=35.88  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |..++++||+++||.+...+
T Consensus        29 l~v~--D~~~a~~FY~~vLG~~~~~~   52 (152)
T 3huh_A           29 LTVS--DISTTIRFYEEVLGFSAVTF   52 (152)
T ss_dssp             EEES--CHHHHHHHHHHTTCCEEEEE
T ss_pred             EEeC--CHHHHHHHHHhcCCCEEEEc
Confidence            6675  79999999999999998876

>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2

Probab=95.62  E-value=0.017  Score=33.12  Aligned_cols=25  Identities=24%  Similarity=0.305  Sum_probs=21.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+...+
T Consensus         8 ~l~v~--D~~~a~~FY~~~lG~~~~~~   32 (113)
T 1xqa_A            8 NLTVA--DVVAAREFLEKYFGLTCSGT   32 (113)
T ss_dssp             EEEES--CHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEeC--CHHHHHHHHHHhCCCEEecc
Confidence            47786  79999999999999988754

>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A

Probab=95.58  E-value=0.009  Score=35.16  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+...+
T Consensus         9 ~l~v~--D~~~a~~FY~~~lG~~~~~~   33 (133)
T 2p7o_A            9 TLIVK--DLNKTTAFLQNIFNAEEIYS   33 (133)
T ss_dssp             EEEES--CHHHHHHHHHHHHCCEECC-
T ss_pred             EEEcC--CHHHHHHHHHHhcCCEEeee
Confidence            47775  79999999999999988765

>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2

Probab=95.56  E-value=0.017  Score=34.61  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.3

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |..++++||+++||.+...+.
T Consensus         9 ~l~v~--D~~~a~~FY~~~LG~~~~~~~   34 (139)
T 1r9c_A            9 TFIVR--DLERMTRILEGVFDAREVYAS   34 (139)
T ss_dssp             EEEES--CHHHHHHHHHHHHCCEEEEEG
T ss_pred             EEEeC--CHHHHHHHHHHhhCCEEeecC
Confidence            36775  799999999999999988763

>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}

Probab=95.53  E-value=0.0057  Score=36.43  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+.+.+
T Consensus        24 ~l~v~--D~~~a~~FY~~~lG~~~~~~   48 (156)
T 3kol_A           24 ALNVQ--DMQASRYFYGTILGLHELTD   48 (156)
T ss_dssp             EEEES--CHHHHHHHHTTTSCCEECCT
T ss_pred             EEEeC--CHHHHHHHHHhhcCCEEEee
Confidence            37775  79999999999999998764

>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}

Probab=95.42  E-value=0.0082  Score=36.75  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |.+++++||+++||.+...+
T Consensus        10 ~l~v~--D~~~a~~FY~~~LG~~~~~~   34 (150)
T 3bqx_A           10 TLGIG--DLEASARFYGEGFGWAPVFR   34 (150)
T ss_dssp             EEEES--CHHHHHHHHHHTSCCCCSEE
T ss_pred             EEEcC--CHHHHHHHHHHhcCCEeecC
Confidence            47775  79999999999999988765

>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8

Probab=95.41  E-value=0.0085  Score=36.01  Aligned_cols=31  Identities=13%  Similarity=0.135  Sum_probs=24.6

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      .+.-.|.|+  |-+++++||+++||.+...+..
T Consensus        12 ~~~i~l~v~--Dl~~s~~FY~~~LG~~~~~~~~   42 (139)
T 1twu_A           12 QIRIARPTG--QLDEIIRFYEEGLCLKRIGEFS   42 (139)
T ss_dssp             CEEEEEECS--CHHHHHHHHTTTSCCCEEEEEE
T ss_pred             eeEEeeEeC--CHHHHHHHHHhcCCcEEEEecc
Confidence            344456686  7999999999999999887654

>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2

Probab=95.41  E-value=0.0096  Score=34.59  Aligned_cols=25  Identities=8%  Similarity=-0.037  Sum_probs=21.4

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      ..|.|+  |..++++||+++||.+...
T Consensus         9 v~l~v~--D~~~a~~FY~~~lG~~~~~   33 (118)
T 2i7r_A            9 LDIIVS--NVPQVCADLEHILDKKADY   33 (118)
T ss_dssp             EEEECS--CHHHHHHHHHHHHTSCCSE
T ss_pred             EEEEeC--CHHHHHHHHHHHhCCeeEE
Confidence            457786  7999999999999998764

>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A

Probab=95.39  E-value=0.011  Score=34.80  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-.+|++||+ +||.+...+
T Consensus        13 i~v~--Dl~~a~~FY~-~lG~~~~~~   35 (133)
T 3hdp_A           13 YAVK--NIDSALKKFK-RLGYVEESE   35 (133)
T ss_dssp             EECS--CHHHHHHHHH-HTTCEECSC
T ss_pred             EEEC--CHHHHHHHHH-HcCCeeecc
Confidence            6775  7999999999 999998765

>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}

Probab=95.31  E-value=0.014  Score=36.02  Aligned_cols=27  Identities=26%  Similarity=0.472  Sum_probs=22.8

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      ..|.|+  |.+++++||+++||.+...+.
T Consensus        29 v~l~v~--Dl~~a~~FY~~~LG~~~~~~~   55 (144)
T 2kjz_A           29 TILYVD--NPPASTQFYKALLGVDPVESS   55 (144)
T ss_dssp             EEEEES--CHHHHHHHHHHHHTCCCSEEE
T ss_pred             EEEEeC--CHHHHHHHHHHccCCEeccCC
Confidence            457886  799999999999999887653

>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*

Probab=95.29  E-value=0.01  Score=35.44  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.7

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+...+
T Consensus        18 ~l~v~--D~~~s~~FY~~~lG~~~~~~   42 (132)
T 3sk2_A           18 LVYVS--NVERSTDFYRFIFKKEPVFV   42 (132)
T ss_dssp             EEECS--CHHHHHHHHHHHHTCCCSEE
T ss_pred             EEEEC--CHHHHHHHHHHHcCCeEEEc
Confidence            47786  79999999999999988755

>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}

Probab=95.24  E-value=0.02  Score=35.66  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      .|.|+  |.+++++||+++||.+...+..
T Consensus        13 ~l~v~--Dl~~a~~FY~~vLG~~~~~~~~   39 (160)
T 3r4q_A           13 ALYAD--DLDAAEAFYRDVFGLEMVLKLP   39 (160)
T ss_dssp             EEECS--CHHHHHHHHHHHSCCEEEEEET
T ss_pred             EEEeC--CHHHHHHHHHHhcCCEEEEecC
Confidence            47775  7999999999999999887643

>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}

Probab=95.17  E-value=0.024  Score=34.64  Aligned_cols=25  Identities=16%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |.+++++||+++||.+...+
T Consensus        32 ~l~v~--Dl~~a~~FY~~vLG~~~~~~   56 (147)
T 3zw5_A           32 VMTVK--SIKDTTMFYSKILGMEVMTF   56 (147)
T ss_dssp             EEEES--CHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEeC--CHHHHHHHHHHhcCCEEEec
Confidence            37775  79999999999999998754

>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}

Probab=95.16  E-value=0.012  Score=36.74  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |.+++++||+++||.+...+
T Consensus        11 ~l~v~--Dl~~a~~FY~~vLG~~~~~~   35 (148)
T 3rhe_A           11 LFYVK--NPAKSEEFYKNLLDTQPIES   35 (148)
T ss_dssp             EEEES--CHHHHHHHHHHHHTCCCSEE
T ss_pred             EEEeC--CHHHHHHHHHHHcCCEEecc
Confidence            37775  79999999999999987655

>3zi1_A Glyoxalase domain-containing protein 4; isomerase; 1.90A {Homo sapiens}

Probab=95.05  E-value=0.017  Score=40.82  Aligned_cols=30  Identities=13%  Similarity=0.182  Sum_probs=25.0

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      .|.|+  |-+++++||+++||.+.+.|...++
T Consensus        32 ~l~V~--Dle~s~~FY~~vLGl~~~~~~~~~~   61 (330)
T 3zi1_A           32 VFKVG--NRFQTARFYRDVLGMKVLRHEEFEE   61 (330)
T ss_dssp             EEECS--CHHHHHHHHHHTSCCEEEEEEEEC-
T ss_pred             EEEeC--CHHHHHHHHHHhcCCeEEEEeecch
Confidence            47775  7999999999999999988876663

>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 1.92A {Bacillus anthracis str}

Probab=95.02  E-value=0.011  Score=34.76  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|...|.+++++||+++||.+...+.
T Consensus        16 l~v~~~D~~~a~~FY~~~lG~~~~~~~   42 (126)
T 2qqz_A           16 VAAPVGCEEEARAFYGETIGMEEIPKP   42 (126)
T ss_dssp             EEECTTTHHHHHHHHTTTTCCEEECCC
T ss_pred             EEcccccHHHHHHHHHhcCCCEEecCc
Confidence            556112799999999999999988663

>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A

Probab=95.02  E-value=0.031  Score=33.33  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |.+++++||+++||.+...+.
T Consensus        10 l~v~--D~~~a~~FY~~~lG~~~~~~~   34 (135)
T 1nki_A           10 LAVA--DLPASIAFYRDLLGFRLEARW   34 (135)
T ss_dssp             EEES--CHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEEcC
Confidence            6775  799999999999999988663

>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2

Probab=94.96  E-value=0.026  Score=33.87  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |..++++||+++||.+...+.
T Consensus         9 ~l~v~--D~~~a~~FY~~~LG~~~~~~~   34 (141)
T 1npb_A            9 TLAVS--DLQKSVTFWHELLGLTLHARW   34 (141)
T ss_dssp             EEEES--CHHHHHHHHHTTSCCEEEEEE
T ss_pred             EEEeC--CHHHHHHHHHhccCCEEEeec
Confidence            36775  799999999999999988763

>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structur initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP}

Probab=94.92  E-value=0.035  Score=34.44  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=21.9

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      ..|.|+  |.+++++||+++||.+...+
T Consensus        29 v~l~v~--Dl~~a~~FY~~vLG~~~~~~   54 (148)
T 2r6u_A           29 FEIPFD--DGDRARAFYRDAFGWAIAEI   54 (148)
T ss_dssp             EEEEES--SHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEEeC--CHHHHHHHHHHccCcEEEEC
Confidence            447786  79999999999999988763

>1ss4_A Glyoxalase family protein; structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; HET: CIT GSH; 1.84A {Bacillus cereus} SCOP: d.32.1.6

Probab=94.92  E-value=0.026  Score=33.55  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=21.2

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |..++++||++ ||.+...+.
T Consensus        16 ~l~v~--D~~~a~~FY~~-lG~~~~~~~   40 (153)
T 1ss4_A           16 SIVVE--SLDNAISFFEE-IGLNLEGRA   40 (153)
T ss_dssp             EEECS--CHHHHHHHHHH-HTCEEEEEE
T ss_pred             EEEeC--CHHHHHHHHHH-CCCEEEeec
Confidence            36775  79999999999 999988664

>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}

Probab=94.90  E-value=0.02  Score=33.77  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |-+++++||+++||.+...+
T Consensus        14 ~l~v~--Dl~~a~~FY~~~LG~~~~~~   38 (135)
T 3rri_A           14 AIPAR--DLDEAYDFYVTKLGCKLARR   38 (135)
T ss_dssp             EEEES--CHHHHHHHHTTTTCCEEEEE
T ss_pred             EEEcC--CHHHHHHHHHHhcCCEeecc
Confidence            36775  79999999999999998654

>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}

Probab=94.63  E-value=0.023  Score=34.42  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=19.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |.+++++||++ ||.+...+
T Consensus        12 l~v~--D~~~a~~FY~~-LG~~~~~~   34 (128)
T 3g12_A           12 INTS--HLQGMLGFYRI-IGFQFTAS   34 (128)
T ss_dssp             EEES--CHHHHHHHHHH-HTCCCEEC
T ss_pred             EEcC--CHHHHHHHHHH-CCCEEecc
Confidence            6775  79999999999 99987755

>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*

Probab=94.49  E-value=0.015  Score=34.87  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             eEEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           15 PQLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      ..|.|+  |.+++++||++ ||.+...+.
T Consensus         8 v~l~v~--D~~~a~~FY~~-LG~~~~~~~   33 (138)
T 2a4x_A            8 FAVVVE--DMAKSLEFYRK-LGVEIPAEA   33 (138)
T ss_dssp             EEEEES--CHHHHHHHHHT-TTCCCCGGG
T ss_pred             EEEEEC--CHHHHHHHHHH-cCCcEEecC
Confidence            457886  79999999998 999877553

>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}

Probab=94.13  E-value=0.069  Score=32.79  Aligned_cols=26  Identities=15%  Similarity=0.231  Sum_probs=22.5

Q ss_pred             EEEEecCChhHHHHHH---HHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFY---EIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FY---k~AFGA~Ev~Rl   43 (71)
                      .|.|+  |.+++++||   +++||.+...+.
T Consensus        25 ~l~v~--Dl~~a~~FY~~~~~~LG~~~~~~~   53 (146)
T 3ct8_A           25 EINVD--HLEESIAFWDWLLGELGYEDYQSW   53 (146)
T ss_dssp             EEEES--CHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEeC--CHHHHHHHHHhhhhhCCCEEEEec
Confidence            47786  799999999   999999988764

>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3

Probab=93.88  E-value=0.078  Score=35.83  Aligned_cols=27  Identities=4%  Similarity=0.143  Sum_probs=22.8

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      .|.|+  |..++++||+++||.+...+..
T Consensus       155 ~l~v~--D~~~a~~FY~~~LG~~~~~~~~  181 (307)
T 1mpy_A          155 LMYGD--ELPATYDLFTKVLGFYLAEQVL  181 (307)
T ss_dssp             EEEES--CHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEcC--CHHHHHHHHHHHcCCeeEeeee
Confidence            36775  7999999999999999887654

>3zi1_A Glyoxalase domain-containing protein 4; isomerase; 1.90A {Homo sapiens}

Probab=93.69  E-value=0.089  Score=37.14  Aligned_cols=29  Identities=17%  Similarity=0.217  Sum_probs=23.9

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMET   46 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P   46 (71)
                      .|.|+  |.+++++||+++||.+.+.+..++
T Consensus       164 ~L~v~--Dl~~a~~FY~~vLG~~~~~~~~~~  192 (330)
T 3zi1_A          164 TLAVS--DLQKSLNYWCNLLGMKIYENDEEK  192 (330)
T ss_dssp             EEEES--CHHHHHHHHHHTTCCEEEEEETTT
T ss_pred             EEECC--CHHHHHHHHHHhcCCEEEeeccCC
Confidence            46675  799999999999999998775543

>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A {Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A 1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B 1kwc_B*

Probab=93.28  E-value=0.065  Score=35.96  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=21.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      |.|+  |..++++||+++||.+...+..
T Consensus       148 l~v~--D~~~a~~FY~~~lG~~~~~~~~  173 (292)
T 1kw3_B          148 RCVP--DTAKAMAFYTEVLGFVLSDIID  173 (292)
T ss_dssp             EECS--CHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EecC--CHHHHHHHHHhccCCEEeeeee
Confidence            6675  7999999999999998876543

>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein from glyoxalase family, structural GENO PSI, protein structure initiative; 1.65A {Bacillus cereus} SCOP: d.32.1.10 d.32.1.10

Probab=93.15  E-value=0.076  Score=36.89  Aligned_cols=25  Identities=16%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |.+++++||+++||.+.+.+.
T Consensus        36 l~v~--Dl~~a~~FY~~~LG~~~~~~~   60 (338)
T 1zsw_A           36 MVTK--NANENNHFYKNVLGLRRVKMT   60 (338)
T ss_dssp             EEES--CHHHHHHHHHTTTCCEEEEEE
T ss_pred             EEcC--CHHHHHHHHHHhcCCEEEEee
Confidence            6775  799999999999999988765

>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance, mycobacterium tube structural genomics, PSI, protein structure initiative; HET: PMB XYL; 1.75A {Mycobacterium tuberculosis}

Probab=93.05  E-value=0.1  Score=35.90  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |..+|++||+++||.+...+
T Consensus        38 l~v~--D~~~a~~FY~~vlG~~~~~~   61 (282)
T 3oxh_A           38 LQTT--DQSAAKKFYTSLFGWGYDDN   61 (282)
T ss_dssp             EEES--CHHHHHHHHHHHHCCEEEEE
T ss_pred             EecC--CHHHHHHHHHHhcCcEEeec
Confidence            6775  79999999999999987654

>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3

Probab=92.76  E-value=0.16  Score=34.24  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |.+++++||+++||.+.+.+.
T Consensus        12 ~l~v~--Dl~~a~~FY~~~lG~~~~~~~   37 (307)
T 1mpy_A           12 QLRVL--DMSKALEHYVELLGLIEMDRD   37 (307)
T ss_dssp             EEEES--CHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEeC--CHHHHHHHHHHccCCEEEeec
Confidence            37786  799999999999999998764

>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP} PDB: 3hpv_A 3hq0_A*

Probab=92.72  E-value=0.11  Score=35.39  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=22.0

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |.+++++||+++||.+.+.+.
T Consensus        14 l~v~--Dl~~a~~FY~~vLG~~~~~~~   38 (309)
T 3hpy_A           14 VRVL--NLEEGIHFYRNVLGLVETGRD   38 (309)
T ss_dssp             EEES--SHHHHHHHHHHTSCCEEEEEC
T ss_pred             EEcC--CHHHHHHHHHhccCCEEEEEc
Confidence            7775  799999999999999988773

>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}

Probab=92.71  E-value=0.11  Score=36.41  Aligned_cols=29  Identities=17%  Similarity=0.204  Sum_probs=23.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      |.|+  |-.++++||+++||.+...++. ++|
T Consensus       159 l~v~--D~~~a~~FY~~vLG~~~~~~~~-~~g  187 (339)
T 3lm4_A          159 LMSS--DVTAVKDSFERHLGFRTTERVV-DGN  187 (339)
T ss_dssp             EEES--CHHHHHHHHHHHHCCEEEEEEE-ETT
T ss_pred             EEcC--CHHHHHHHHHHhCCCeEEEEEe-cCC
Confidence            6675  7999999999999999887766 344

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=92.52  E-value=0.11  Score=36.54  Aligned_cols=30  Identities=7%  Similarity=0.023  Sum_probs=24.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      +.|+  |..++++||.++||-+++.|....+|
T Consensus        11 ~~v~--D~~~a~~fy~~~LGf~~~~~~~~~~g   40 (357)
T 2r5v_A           11 MYVE--NLEVAAFSWVDKYAFAVAGTSRSADH   40 (357)
T ss_dssp             EECS--CHHHHHHHHHHHHCCEEEEEEEETTE
T ss_pred             EEEC--CHHHHHHHHHHcCCCeEEEEEcCCCc
Confidence            5675  79999999999999999987654444

>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance, mycobacterium tube structural genomics, PSI, protein structure initiative; HET: PMB XYL; 1.75A {Mycobacterium tuberculosis}

Probab=92.52  E-value=0.098  Score=35.95  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |..++++||+++||.+...+
T Consensus       169 ~l~v~--D~~~a~~FY~~vlG~~~~~~  193 (282)
T 3oxh_A          169 ELLTD--KPDLALAFYEAVVGLTHSSM  193 (282)
T ss_dssp             EEECS--CHHHHHHHHHHHHCCEEEEC
T ss_pred             EEEcC--CHHHHHHHHHHHhCCeeeec
Confidence            46775  79999999999999987754

>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA, TB, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium tuberculosis} PDB: 2zi8_A*

Probab=92.50  E-value=0.093  Score=35.34  Aligned_cols=26  Identities=15%  Similarity=0.174  Sum_probs=22.0

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      |.|+  |-+++++||+++||.+...+..
T Consensus       148 l~v~--D~~~a~~FY~~~LG~~~~~~~~  173 (300)
T 2zyq_A          148 LSTR--DDAEALHFYRDVLGFRLRDSMR  173 (300)
T ss_dssp             EECS--CHHHHHHHHHTTTCCEEEEEEE
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEeeeec
Confidence            6675  7999999999999999876543

>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A

Probab=92.45  E-value=0.16  Score=35.11  Aligned_cols=30  Identities=3%  Similarity=-0.020  Sum_probs=24.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      |.|+  |..++++|| ++||.+...+...++|+
T Consensus       158 l~v~--D~~~a~~FY-~~LGf~~~~~~~~~~g~  187 (323)
T 1f1u_A          158 QVTP--DVPRGRAYL-EDLGFRVSEDIKDSDGV  187 (323)
T ss_dssp             EEES--CHHHHHHHH-HHTTCEEEEEEECTTCC
T ss_pred             EecC--CHHHHHHHH-HhCCCeEEEEEEcCCCc
Confidence            6675  799999999 99999988777666653

>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP} PDB: 3hpv_A 3hq0_A*

Probab=92.39  E-value=0.16  Score=34.53  Aligned_cols=29  Identities=10%  Similarity=0.165  Sum_probs=23.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      |.|+  |..++++||+++||.+...+...++
T Consensus       157 l~v~--D~~~~~~FY~~~LG~~~~~~~~~~~  185 (309)
T 3hpy_A          157 LYGP--NIAEVQKIFTEVLGFYLVERVLSPD  185 (309)
T ss_dssp             EEES--CHHHHHHHHHHTSCCEEEEEEECSS
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEEEEecCC
Confidence            6775  7999999999999998877765443

>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A {Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A 1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B 1kwc_B*

Probab=92.32  E-value=0.14  Score=34.30  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=21.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |.+++++||+++||.+.+.+
T Consensus        10 l~v~--Dl~~a~~FY~~~lG~~~~~~   33 (292)
T 1kw3_B           10 FAVK--DVPAWDHFLTKSVGLMAAGS   33 (292)
T ss_dssp             EEES--CHHHHHHHHHHTTCCEEEEE
T ss_pred             EEeC--CHHHHHHHHHhcCCCEEeec
Confidence            6775  79999999999999998876

>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase, 2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB biodegradation; HET: BP3; 1.70A {Burkholderia xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A 1knf_A 1han_A* 1lkd_A*

Probab=91.79  E-value=0.18  Score=33.91  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |.+++++||+++||.+.+.+
T Consensus        10 l~v~--Dl~~s~~FY~~~LG~~~~~~   33 (297)
T 1lgt_A           10 FAVS--DVAAWRSFLTQKLGLMEAGT   33 (297)
T ss_dssp             EEES--CHHHHHHHHHHTTCCEEEEE
T ss_pred             EEcC--CHHHHHHHHHHccCCEEeec
Confidence            6775  79999999999999998876

>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}

Probab=91.64  E-value=0.15  Score=36.38  Aligned_cols=27  Identities=15%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNME   45 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~   45 (71)
                      |.|+  |..++++||+++||.+.+.|..+
T Consensus        14 l~v~--Dl~~s~~FY~~vLGl~~v~~~~~   40 (335)
T 3oaj_A           14 AIVG--HPQENTDFYAGVLGLRLVKQTVN   40 (335)
T ss_dssp             EEES--CHHHHHHHHTTTTCCEEEEEEEC
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEeeecC
Confidence            6775  79999999999999999887543

>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase, protein substrate complex, oxidoreduc; 1.35A {Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A

Probab=91.52  E-value=0.12  Score=35.16  Aligned_cols=24  Identities=13%  Similarity=0.137  Sum_probs=21.1

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |.+++++||+++||.+.+.+
T Consensus        15 l~v~--Dl~~a~~FY~~~LG~~~~~~   38 (302)
T 2ehz_A           15 ISVK--DPDAWKSFATDMLGLQVLDE   38 (302)
T ss_dssp             EECS--CHHHHHHHHHHTTCCEEECC
T ss_pred             EEeC--CHHHHHHHHHhcCCCEEEec
Confidence            6775  79999999999999998765

>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase, 2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB biodegradation; HET: BP3; 1.70A {Burkholderia xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A 1knf_A 1han_A* 1lkd_A*

Probab=91.16  E-value=0.19  Score=33.73  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=21.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |..++++||+++||.+...+.
T Consensus       148 l~v~--D~~~a~~FY~~~lG~~~~~~~  172 (297)
T 1lgt_A          148 RCVP--DSDKALAFYTDVLGFQLSDVI  172 (297)
T ss_dssp             EECS--CHHHHHHHHHHTTCCEEEEEE
T ss_pred             EecC--CHHHHHHHHHHhcCCeeeeEE
Confidence            6775  799999999999999987654

>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}

Probab=91.13  E-value=0.13  Score=31.12  Aligned_cols=26  Identities=15%  Similarity=-0.024  Sum_probs=18.4

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      .|.|+  |-+++++||++.+| ....+..
T Consensus        14 ~L~V~--Dl~~s~~FY~~lg~-~~~~~~~   39 (149)
T 4gym_A           14 NLPVA--DVAASQAFFGTLGF-EFNPKFT   39 (149)
T ss_dssp             EEEES--CHHHHHHHHHHTTC-EECGGGC
T ss_pred             EEEeC--CHHHHHHHHHHhCC-Ccceeec
Confidence            38997  79999999988544 4443333

>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein from glyoxalase family, structural GENO PSI, protein structure initiative; 1.65A {Bacillus cereus} SCOP: d.32.1.10 d.32.1.10

Probab=90.68  E-value=0.25  Score=34.24  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|.|+  |-.++++||+++||.+...+.
T Consensus       185 ~l~v~--Dl~~a~~FY~~~LG~~~~~~~  210 (338)
T 1zsw_A          185 ELTVR--RLDKMASTLTEIFGYTEVSRN  210 (338)
T ss_dssp             EEEES--CHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEC--CHHHHHHHHHHhcCCEEEeec
Confidence            36775  799999999999999987653

>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC, PSI-2, structural genomics, Pro structure initiative; 2.53A {Novosphingobium aromaticivorans}

Probab=90.68  E-value=0.25  Score=34.06  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |.+++++||+++||.+...+
T Consensus        13 ~l~v~--Dl~~a~~FY~~vlG~~~~~~   37 (310)
T 3b59_A           13 GYGVK--DFDAEKAFYADVWGLEPVGE   37 (310)
T ss_dssp             EEEES--SHHHHHHHHHHTTCCEEEEE
T ss_pred             EEecC--CHHHHHHHHHhCcCCEEeee
Confidence            36775  79999999999999998765

>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA, TB, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium tuberculosis} PDB: 2zi8_A*

Probab=90.62  E-value=0.14  Score=34.42  Aligned_cols=24  Identities=13%  Similarity=0.080  Sum_probs=20.9

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEE
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      .|.|+  |.+++++||+++||.+.+.
T Consensus        10 ~l~v~--Dl~~a~~FY~~~lG~~~~~   33 (300)
T 2zyq_A           10 RIEAT--DMAAWREYGLKVLGMVEGK   33 (300)
T ss_dssp             EEEES--CHHHHHHHHHHTSCCEECS
T ss_pred             EEEeC--CHHHHHHHHHHccCCEEec
Confidence            37786  7999999999999998875

>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}

Probab=90.59  E-value=0.25  Score=34.66  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=21.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|.  |.+++++||+++||.+++.+
T Consensus        17 l~v~--Dl~~a~~FY~~vLG~~~~~~   40 (339)
T 3lm4_A           17 LFSP--KPQETLDFFTKFLGMYVTHR   40 (339)
T ss_dssp             EEES--SHHHHHHHHHHTTCCEEEEE
T ss_pred             EEeC--CHHHHHHHHHhcCCCEEEEe
Confidence            6775  79999999999999999876

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=90.55  E-value=0.2  Score=37.45  Aligned_cols=27  Identities=11%  Similarity=0.142  Sum_probs=23.1

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      .|.|.  |..+|++||+++||.+.+.+..
T Consensus        30 ~i~V~--Dle~a~~FY~~~LGf~~v~~~~   56 (424)
T 1sqd_A           30 EFWCG--DATNVARRFSWGLGMRFSAKSD   56 (424)
T ss_dssp             EEECS--CHHHHHHHHHHHHTCEEEEEES
T ss_pred             EEEEC--CHHHHHHHHHHcCCCEEEEEEc
Confidence            36775  7999999999999999988754

>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A

Probab=90.46  E-value=0.21  Score=34.58  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |.+++++||+++||.++..+
T Consensus        22 ~l~v~--Dl~~a~~FY~~vlG~~~~~~   46 (323)
T 1f1u_A           22 EIVVT--DLAKSREFYVDVLGLHVTEE   46 (323)
T ss_dssp             EEEES--CHHHHHHHHTTTTCCEEEEE
T ss_pred             EEEeC--CHHHHHHHHHhCCCCEEeee
Confidence            36675  79999999999999998776

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3

Probab=90.41  E-value=0.22  Score=36.01  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      +.|.  |+.++++||+++||.+++.|.
T Consensus        28 i~V~--D~~~a~~FY~~~LGf~~~~~~   52 (381)
T 1t47_A           28 FAVG--NAKQAAHYYSTAFGMQLVAYS   52 (381)
T ss_dssp             EECS--CHHHHHHHHHHTSCCEEEEEE
T ss_pred             EEEC--CHHHHHHHHHHcCCCEEEEEE
Confidence            5675  799999999999999999874

>4ghg_A Homoprotocatechuate 2,3-dioxygenase; oxygen activation, Fe(II), 2-His-1-carboxylate triad, 4-nitrocatechol, OXY complex, oxidoreductase; HET: P6G PG4 DHY; 1.50A {Brevibacterium fuscum} PDB: 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A* 3bza_A* 3ojk_A* 3ojt_A* 3ojn_A* 4ghh_A* 4ghc_A 4ghd_A* 4ghe_A* 4ghf_A* 3eck_A* 3ecj_A*

Probab=90.10  E-value=0.22  Score=36.24  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=21.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|.  |-+++++||+++||-+++.|
T Consensus        23 l~V~--DLe~s~~FY~dvLGL~~~~~   46 (365)
T 4ghg_A           23 LVVT--DLAKSRNFYVDVLGLHVSYE   46 (365)
T ss_dssp             EEES--CHHHHHHHHTTTTCCEEEEE
T ss_pred             EEeC--CHHHHHHHHhhCCCCEEEEE
Confidence            7775  79999999999999999877

>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC, PSI-2, structural genomics, Pro structure initiative; 2.53A {Novosphingobium aromaticivorans}

Probab=89.89  E-value=0.31  Score=33.56  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=21.6

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |..++++||+++||.+...+.
T Consensus       147 l~v~--D~~~a~~FY~~~LG~~~~~~~  171 (310)
T 3b59_A          147 LHSP--NHQDMVKFFTDVLGFKVSDWL  171 (310)
T ss_dssp             EEET--THHHHHHHHHHTSCCEEEEEE
T ss_pred             EecC--CHHHHHHHHHhCCCCEEEEee
Confidence            6675  799999999999999987764

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=88.95  E-value=0.56  Score=35.00  Aligned_cols=29  Identities=7%  Similarity=-0.056  Sum_probs=22.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      +.|  +|-.++++||+++||.++..+...+|
T Consensus       208 i~V--~dl~~a~~FY~~~LGf~~~~~~~~~d  236 (424)
T 1sqd_A          208 GNV--PELGPALTYVAGFTGFHQFAEFTADD  236 (424)
T ss_dssp             EEC--SCHHHHHHHHHHHHCCEEEEEEC---
T ss_pred             Eee--CCHHHHHHHHHHhhCCeEEEEEcccc
Confidence            445  58999999999999999987765443

>3pkv_A Toxoflavin lyase (TFLA); metalloenzyme, vicinal oxygen chelate superfamily; 1.34A {Paenibacillus polymyxa} PDB: 3pkw_A 3pkx_A* 3oul_A 3oum_A*

Probab=88.87  E-value=0.28  Score=34.06  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |.+++++||+++||.+++.+
T Consensus        32 L~V~--Dle~s~~FY~~vLGl~~~~~   55 (252)
T 3pkv_A           32 LYTA--ELDRMLAFYTNMLGAQHVHE   55 (252)
T ss_dssp             EEES--CHHHHHHHHHHHHCGGGEEE
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEEc
Confidence            6775  79999999999999988876

>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase, protein substrate complex, oxidoreduc; 1.35A {Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A

Probab=88.82  E-value=0.15  Score=34.65  Aligned_cols=23  Identities=13%  Similarity=0.146  Sum_probs=19.1

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |..++++|| ++||.+...+
T Consensus       155 l~v~--D~~~a~~FY-~~lG~~~~~~  177 (302)
T 2ehz_A          155 VRQT--DVAEAHKFY-SLLGFRGDVE  177 (302)
T ss_dssp             ECCS--CHHHHHHHH-HHTTCBCCEE
T ss_pred             EEcC--CHHHHHHHH-HhcCCeeeeE
Confidence            5665  799999999 9999987644

>4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida}

Probab=88.73  E-value=0.59  Score=28.62  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             cccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecC
Q 047456            8 TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNME   45 (71)
Q Consensus         8 ~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~   45 (71)
                      .|+..+.=..+++  +-..|+.||++ +|.+++.|+++
T Consensus       120 ~g~~~~~l~~~~~--~N~~A~~~y~k-~GF~~~G~~~~  154 (173)
T 4h89_A          120 EGFRAIQFNAVVE--TNTVAVKLWQS-LGFRVIGTVPE  154 (173)
T ss_dssp             TTCSEEEEEEEET--TCHHHHHHHHH-TTCEEEEEEEE
T ss_pred             CCCcEEEEeeecc--cCHHHHHHHHH-CCCEEEEEEcc
Confidence            3455443223343  45789999988 89999988763

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=88.62  E-value=0.63  Score=34.67  Aligned_cols=31  Identities=6%  Similarity=0.098  Sum_probs=22.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      +.+.-+|-.++++||+++||.++..+...++
T Consensus       203 v~i~V~dl~~a~~FY~~vLGf~~~~~~~~~d  233 (418)
T 1sp8_A          203 IVGNVPELAPAAAYFAGFTGFHEFAEFTTED  233 (418)
T ss_dssp             EEEECSCHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             EEEecCCHHHHHHHHHHHcCCEEEEEecccc
Confidence            3333358999999999999999987765433

>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A

Probab=88.14  E-value=0.26  Score=33.41  Aligned_cols=23  Identities=13%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |.+++++|| ++||.+...+
T Consensus       152 l~v~--D~~~s~~FY-~vLG~~~~~~  174 (305)
T 2wl9_A          152 IRED--DVEEATRFY-RLLGLEGAVE  174 (305)
T ss_dssp             ECCS--CHHHHHHHH-HHHTCEEEEC
T ss_pred             EECC--CHHHHHHHH-HHcCCeeeee
Confidence            5665  799999999 9999988654

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*

Probab=88.10  E-value=0.39  Score=36.03  Aligned_cols=30  Identities=17%  Similarity=0.177  Sum_probs=24.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      +.|.  |+.+|++||.++||.+.+.+...+.|
T Consensus        17 i~V~--d~~~a~~fY~~~LGf~~v~~~~~e~g   46 (393)
T 3isq_A           17 FWVG--NAKQAASFYCSKMGFEPLAYRGLETG   46 (393)
T ss_dssp             EECS--CHHHHHHHHHHHHCCEEEEEESGGGT
T ss_pred             EEEC--CHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            5675  79999999999999999987544444

>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A

Probab=87.51  E-value=0.29  Score=33.19  Aligned_cols=23  Identities=13%  Similarity=0.096  Sum_probs=20.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEE
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      |.|+  |.+++++||+++||.+.+.
T Consensus        12 l~v~--Dl~~a~~FY~~~LG~~~~~   34 (305)
T 2wl9_A           12 LSVS--NLDAWRDYAAGIMGMQVVD   34 (305)
T ss_dssp             EECS--CHHHHHHHHTTTTCCEEEC
T ss_pred             EEeC--CHHHHHHHHHhccCCEEee
Confidence            6775  7999999999999998876

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=86.07  E-value=0.49  Score=35.25  Aligned_cols=26  Identities=19%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      +.|.  |..+|++||.++||.+.+.|..
T Consensus        37 i~V~--Dle~a~~fY~~~LGf~~~~~~~   62 (418)
T 1sp8_A           37 LWCA--DAASAAGRFSFGLGAPLAARSD   62 (418)
T ss_dssp             EECS--CHHHHHHHHHHHHTCCEEEEES
T ss_pred             EEeC--CHHHHHHHHHHhCCCEEEEEEc
Confidence            5675  7999999999999999988743

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=84.71  E-value=1.3  Score=30.95  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+..|-.++++||+++||.++..+
T Consensus       164 l~V~~~D~~~~~~FY~~vLGf~~~~~  189 (357)
T 2r5v_A          164 ICLNAGDLGPTVEYYERALGFRQIFD  189 (357)
T ss_dssp             EECCTTCHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEchhhHHHHHHHHHHhcCCcEEEE
Confidence            55631169999999999999998744

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*

Probab=84.25  E-value=1.2  Score=33.43  Aligned_cols=26  Identities=4%  Similarity=-0.074  Sum_probs=19.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      +.|.+.+-.++++||+++||.++..+
T Consensus       179 i~V~~~~l~~a~~fY~~~lGf~~~~~  204 (393)
T 3isq_A          179 GNQPDQEMVSASEWYLKNLQFHRFWS  204 (393)
T ss_dssp             EECCTTCHHHHHHHHHHHHCCEEEEE
T ss_pred             EecCccHHHHHHHHHHHHhCCEEecc
Confidence            34432248999999999999998655

>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}

Probab=83.69  E-value=0.9  Score=32.32  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |..++++||+++||.+++.+
T Consensus       159 L~v~--Dle~t~~FY~~vLG~~~~~~  182 (335)
T 3oaj_A          159 LLSE--QPDKTADLLENIMGLERVGK  182 (335)
T ss_dssp             EECS--SHHHHHHHHHHTSCCEEEEE
T ss_pred             EEEC--CHHHHHHHHHHHhCCEEeec
Confidence            7775  79999999999999998865

>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}

Probab=81.83  E-value=1.1  Score=32.55  Aligned_cols=30  Identities=17%  Similarity=0.272  Sum_probs=26.2

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      ...++|.|-|+  +-...|+||+++.|-..+.
T Consensus         9 ~~~~~p~LrV~--nr~~~~~FY~~vlG~kll~   38 (244)
T 3e0r_A            9 IVRIIPTLKAN--NRKLNETFYIETLGMKALL   38 (244)
T ss_dssp             EEEEEEEEEES--SHHHHHHHHTTTTCCEEEE
T ss_pred             eEEEeeEEEEC--CHHHHHHHHHhccCcEEee
Confidence            45788999997  7999999999999997654

>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A {Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3

Probab=80.05  E-value=1.3  Score=31.38  Aligned_cols=27  Identities=22%  Similarity=0.089  Sum_probs=20.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|...|-.++++||+++||.++..+.
T Consensus       164 l~V~~~dl~~a~~FY~~vLGf~~~~~~  190 (357)
T 1cjx_A          164 HNVYRGRMVYWANFYEKLFNFREARYF  190 (357)
T ss_dssp             EECCTTHHHHHHHHHHHHHCCEEEEEE
T ss_pred             EeechhhHHHHHHHHHHhhCCceeeEE
Confidence            556411699999999999999987553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d1xy7a_	135	d.32.1.9 (A:) Hypothetical protein At5g48480 {Thal	8e-05

>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein At5g48480
domain: Hypothetical protein At5g48480
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.7 bits (81), Expect = 8e-05
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42
          F   K  LLVEA K   +V FY+ AFGA+E   
Sbjct: 4  FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGH 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1xy7a_	135	Hypothetical protein At5g48480 {Thale cress (Arabi	99.6
d1u7ia_	134	Hypothetical protein PA1358 {Pseudomonas aeruginos	99.51
d1tsja_	129	Hypothetical protein MW1090 {Staphylococcus aureus	99.47
d1u6la_	137	Hypothetical protein PA1353 {Pseudomonas aeruginos	99.32
d1u69a_	156	Hypothetical protein PA2721 {Pseudomonas aeruginos	98.92
d1xrka_	120	Bleomycin resistance protein, BRP {Streptoalloteic	97.97
d1jifa_	122	Bleomycin resistance protein, BRP {Streptomyces ve	97.55
d2pjsa1	111	Uncharacterized protein Atu1953 {Agrobacterium tum	97.36
d2c21a1	139	Glyoxalase I (lactoylglutathione lyase) {Leishmani	97.32
d1sqia1	149	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	97.22
d1t47a1	163	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	97.17
d1f9za_	135	Glyoxalase I (lactoylglutathione lyase) {Escherich	97.12
d1qipa_	176	Glyoxalase I (lactoylglutathione lyase) {Human (Ho	96.99
d1sp8a1	172	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	96.88
d1jc4a_	145	Methylmalonyl-CoA epimerase {Propionibacterium she	96.79
d1sqda1	167	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	96.77
d1r9ca_	130	Fosfomycin resistance protein FosX {Mesorhizobium	96.75
d1xqaa_	113	Hypothetical protein BC3580 {Bacillus cereus [TaxI	96.33
d1ecsa_	120	Bleomycin resistance protein, BRP {Klebsiella pneu	96.27
d1mpya2	162	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	96.17
d1zswa1	144	Hypothetical protein BC1024 {Bacillus cereus [TaxI	96.12
d2i7ra1	115	Hypotheical protein SP0731 {Streptococcus pneumoni	96.01
d1mpya1	145	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	95.95
d1twua_	137	Hypothetical protein YycE {Bacillus subtilis [TaxI	95.8
d1lgta1	131	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	95.61
d1nkia_	134	Fosfomycin resistance protein A (FosA) {Pseudomona	95.49
d1npba_	140	Fosfomycin resistance protein A (FosA) {Serratia m	94.86
d1ss4a_	149	Hypothetical protein BC1747 {Bacillus cereus (stra	94.73
d1zswa2	170	Hypothetical protein BC1024 {Bacillus cereus [TaxI	94.58
d1f1ua1	146	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	94.46
d1f1ua2	176	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	94.35
d1kw3b1	132	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	94.25
d1kw3b2	156	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	94.16
d1cjxa2	203	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	90.95
d1klla_	128	Mitomycin resistance protein D, MRD {Streptomyces	90.04
d1sp8a2	224	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	89.59
d1u6ma_	189	Putative acetyltransferase EF0945 {Enterococcus fa	88.97
d1t47a2	199	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	88.31
d1sqia2	210	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	85.86

>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein At5g48480
domain: Hypothetical protein At5g48480
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=2e-16  Score=97.25  Aligned_cols=62  Identities=39%  Similarity=0.523  Sum_probs=42.8

Q ss_pred             cccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhccccceeeceeccccccc
Q 047456            8 TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus         8 ~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~~~   69 (71)
                      ..|.+++|+|.|+.+|+++||+||+++||++++.|+..+++....+-+.++|++|++|...+
T Consensus         2 ~~~~~~~P~l~v~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~   63 (135)
T d1xy7a_           2 LVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSF   63 (135)
T ss_dssp             CCEEEEEEEEEECTTCHHHHHHHHHHHHCCEEC---------------CCCEEEEEETTEEE
T ss_pred             cceeeEccEEEEECCCHHHHHHHHHHHhCCEEEEEEecCCccccccCCcEEEEEEEECCeee
Confidence            35889999999997789999999999999999999999999888888899999999987654

>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1358
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.51  E-value=1.1e-14  Score=92.59  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=43.3

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhccccceeeceeccccccc
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~~~   69 (71)
                      .|+|||.+++.+|++||+||+++||++++.|+..-....+++-..|+||+|++|...+
T Consensus         5 ~l~PyL~f~g~~a~eAi~FY~~~Fg~~~v~~~~~~~~~~~~~~g~v~ha~l~i~~~~i   62 (134)
T d1u7ia_           5 RVRPFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRLGDQSV   62 (134)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHHHCSSEEEEEEEECCTTCSSCTTSEEEEEEEETTEEE
T ss_pred             cEEEEEEECCcCHHHHHHHHHHhCCCeEEEEEEEcCCCCCCCCCCEEEEEEEECCEEE
Confidence            5899999986679999999999999999988742111111222359999999987643

>d1tsja_ d.32.1.7 (A:) Hypothetical protein MW1090 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein MW1090
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.47  E-value=1.9e-14  Score=91.54  Aligned_cols=59  Identities=12%  Similarity=0.090  Sum_probs=44.2

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhccccceeeceeccccccc
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~~~   69 (71)
                      +..|+|||.+++ +|++||+||+++||++++.|+...+....++-..|+||+|++|...+
T Consensus         3 m~~i~Pyl~f~g-~a~eAi~FY~~vFg~~~v~~~~~~~~~~~~~~g~i~ha~l~i~g~~~   61 (129)
T d1tsja_           3 IPKITTFLMFNN-QAEEAVKLYTSLFEDSEIITMAKYGENGPGDPGTVQHSIFTLNGQVF   61 (129)
T ss_dssp             CCSEEEEEECSS-CHHHHHHHHHHHSSSCEEEEEEECC-----CTTSEEEEEEEETTEEE
T ss_pred             CCcEEEEEEECC-CHHHHHHHHHHHcCCcEEEEEEecCCCCCCCCCcEEEEEEEECCEEE
Confidence            467999999975 89999999999999999888643222222233469999999998654

>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1353
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.32  E-value=1.2e-12  Score=81.31  Aligned_cols=57  Identities=9%  Similarity=0.041  Sum_probs=44.7

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhcccc-----ceeeceeccccccc
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELN-----SRLPKDCNTTLAQL   69 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~-----~v~hael~~g~~~~   69 (71)
                      .|+|||.+++ +|++||+||+++||++.+.++...++.....+|     .|+|++|+++...+
T Consensus         3 ~i~pyl~f~g-~a~eAl~FY~~~fG~e~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~~   64 (137)
T d1u6la_           3 QIVPYLIFNG-NCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSFAL   64 (137)
T ss_dssp             EEEEEEEESS-CHHHHHHHHHHHHCSEEEEEEESTTTTC----CCSSCCCEEEEEEEETTEEE
T ss_pred             eEEEEEEECC-CHHHHHHHHHHHCCCEEEEEEEcccCCccccCCCCCCCeEEEEEEEEcCeEE
Confidence            4899999985 899999999999999999988766654333332     58999999987654

>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA2721
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.92  E-value=7.6e-10  Score=73.53  Aligned_cols=57  Identities=11%  Similarity=0.023  Sum_probs=40.7

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEeecC-CCcchhccccceeeceeccccccc
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNME-TKRKAEQELNSRLPKDCNTTLAQL   69 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~-PdGk~~~~~~~v~hael~~g~~~~   69 (71)
                      -|||.|..++ +|.+|++||+++||..++..+.. |+...+-.--.|+|++|++|...+
T Consensus         2 ~~t~~L~F~G-na~EAl~FY~~vFg~~~i~~~~~~~~~~p~~~~~~Vmha~l~i~g~~l   59 (156)
T d1u69a_           2 KNTICLWYDS-AALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVMGIPC   59 (156)
T ss_dssp             CEEEEEEESS-CHHHHHHHHHHHSTTEEEEEEEECSSCBTTBCTTSEEEEEEEETTEEE
T ss_pred             CCcEeeeECC-cHHHHHHHHHHHcCCCEEeEEEecCCCCCCCCCCcEEEEEEEECCeEE
Confidence            4899999997 99999999999998877766531 111011111249999999987543

>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptoalloteichus hindustanus [TaxId: 2017]

Probab=97.97  E-value=4.8e-06  Score=47.60  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             cccceeEEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      ++++.|.|.|+  |-+++++||+++||.+++.|..
T Consensus         3 ~t~~~pvL~v~--D~~~s~~FY~~~LG~~~~~~~~   35 (120)
T d1xrka_           3 LTSAVPVLTAR--DVAEAVEFWTDRLGFSRVFVED   35 (120)
T ss_dssp             EEEEEEEEEES--CHHHHHHHHHHTTCCEEEEECS
T ss_pred             ceeEEEEEEEC--CHHHHHHHHHHhhCCeEEEECC
Confidence            57889999997  7999999999999999988744

>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptomyces verticillus [TaxId: 29309]

Probab=97.55  E-value=5.4e-05  Score=43.53  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=28.5

Q ss_pred             ccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456            9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus         9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      -+..+.|.|.|+  |-+++++||+++||.+...+
T Consensus         3 ~~~~~~pvL~v~--Dl~~s~~FY~~vLG~~~~~~   34 (122)
T d1jifa_           3 KFLGAVPVLTAV--DVPANVSFWVDTLGFEKDFG   34 (122)
T ss_dssp             CEEEEEEEEEES--SHHHHHHHHHHTTCCEEEEE
T ss_pred             cceeeEEEEEcC--CHHHHHHHHHhhhCCceEec
Confidence            467789999997  79999999999999998865

>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Uncharacterized protein Atu1953
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.36  E-value=3.9e-05  Score=43.21  Aligned_cols=29  Identities=10%  Similarity=0.147  Sum_probs=26.2

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .+.|+|.|+  |-+++++||+++||.+...+
T Consensus         3 ri~~~l~v~--d~~~a~~FY~~~lG~~~~~~   31 (111)
T d2pjsa1           3 RVVANIATP--EPARAQAFYGDILGMPVAMD   31 (111)
T ss_dssp             EEEEEEECS--CGGGGHHHHTTTTCCCEEEE
T ss_pred             EEEEEEEeC--CHHHHHHHHHHhhCCceeec
Confidence            568999997  79999999999999998866

>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Leishmania major [TaxId: 5664]

Probab=97.32  E-value=8.2e-05  Score=42.13  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=27.1

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      .|.|+  |-.++++||+++||.++..|...+++.
T Consensus         8 ~l~V~--Dl~~s~~FY~~~LG~~~~~~~~~~~~~   39 (139)
T d2c21a1           8 MIRVG--DLDRSIKFYTERLGMKVLRKWDVPEDK   39 (139)
T ss_dssp             EEECS--CHHHHHHHHHHTTCCEEEEEEEEGGGT
T ss_pred             EEEeC--CHHHHHHHHHHHhCCEeeccccccccc
Confidence            37886  799999999999999999987766543

>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00015  Score=43.82  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=29.5

Q ss_pred             ecccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456            7 STNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus         7 ~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      ..+++-|.  +.|+  |.++|++||+++||.+++.+...+++
T Consensus         9 ~~~~dHi~--i~V~--Dl~~a~~fY~~~lGf~~~~~~~~~~~   46 (149)
T d1sqia1           9 FLHFHSVT--FWVG--NAKQAASFYCNKMGFEPLAYKGLETG   46 (149)
T ss_dssp             EEEEEEEE--EECS--CHHHHHHHHHHHHCCEEEEEESGGGT
T ss_pred             eeeEeEEE--EEcC--CHHHHHHHHhhccceEEEEEecccCC
Confidence            45555543  5675  79999999999999999998765554

>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=97.17  E-value=0.00013  Score=44.99  Aligned_cols=30  Identities=20%  Similarity=0.341  Sum_probs=24.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      +.|+  |+++|++||+++||.+++.+...+++
T Consensus        13 i~V~--D~~~a~~fY~~~lGf~~v~~~~~~~~   42 (163)
T d1t47a1          13 FAVG--NAKQAAHYYSTAFGMQLVAYSGPENG   42 (163)
T ss_dssp             EECS--CHHHHHHHHHHTSCCEEEEEESGGGT
T ss_pred             EEeC--CHHHHHHHHHHHhCCeEEeeeccccc
Confidence            6675  79999999999999999987654443

>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00023  Score=40.29  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=26.6

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      |.|+  |-+++++||+++||-+...|...+.+.
T Consensus         8 i~V~--Dl~~s~~FY~~iLG~~~~~~~~~~~~~   38 (135)
T d1f9za_           8 LRVG--DLQRSIDFYTKVLGMKLLRTSENPEYK   38 (135)
T ss_dssp             EECS--CHHHHHHHHHHTTCCEEEEEEEETTTT
T ss_pred             EEcC--CHHHHHHHHHHHhCCEEEeeccccccc
Confidence            6775  799999999999999999887777654

>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00034  Score=42.85  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=26.5

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      .|.|+  |-.++|+||+++||.+++.+...+.++
T Consensus        28 ~l~V~--Dl~~si~FY~~vLG~~~~~~~~~~~~~   59 (176)
T d1qipa_          28 MLRVK--DPKKSLDFYTRVLGMTLIQKCDFPIMK   59 (176)
T ss_dssp             EEECS--CHHHHHHHHHHTTCCEEEEEEEETTTT
T ss_pred             EEEeC--CHHHHHHHHHHhhCCeEeeeecccCCc
Confidence            37775  799999999999999999887766543

>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=96.88  E-value=0.00034  Score=43.83  Aligned_cols=39  Identities=15%  Similarity=0.220  Sum_probs=30.2

Q ss_pred             cccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcch
Q 047456            8 TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKA   50 (71)
Q Consensus         8 ~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~   50 (71)
                      .+++-|.  +.|+  |..++++||+++||.+.+.|...+++..
T Consensus        12 ~~~~Hi~--i~V~--D~e~a~~FY~~~LGf~~v~~~~~~~~~~   50 (172)
T d1sp8a1          12 LAFHHVE--LWCA--DAASAAGRFSFGLGAPLAARSDLSTGNS   50 (172)
T ss_dssp             EEEEEEE--EECS--CHHHHHHHHHHHHTCCEEEEESGGGTCC
T ss_pred             CEEEEEE--EEeC--CHHHHHHHHHHhhCceEEEEecccccce
Confidence            3444433  7786  7999999999999999999877666543

>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase {Propionibacterium shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Methylmalonyl-CoA epimerase
domain: Methylmalonyl-CoA epimerase
species: Propionibacterium shermanii [TaxId: 1752]

Probab=96.79  E-value=0.00067  Score=39.24  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      |+|+  |.++|++||+++||.+...+...+++
T Consensus        13 i~v~--Dl~~a~~fY~~~lG~~~~~~~~~~~~   42 (145)
T d1jc4a_          13 YACP--DADEASKYYQETFGWHELHREENPEQ   42 (145)
T ss_dssp             EECS--CHHHHHHHHHHHHCCEEEEEEEETTT
T ss_pred             EEeC--CHHHHHHHHHhhccCceeeeeeeccc
Confidence            6775  79999999999999999877665554

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.77  E-value=0.00058  Score=41.96  Aligned_cols=31  Identities=10%  Similarity=0.090  Sum_probs=26.1

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      +.|.  |..+|++||+++||.+++.|...+++.
T Consensus        18 i~V~--Dle~a~~fY~~~LGf~~~~~~~~~~~~   48 (167)
T d1sqda1          18 FWCG--DATNVARRFSWGLGMRFSAKSDLSTGN   48 (167)
T ss_dssp             EECS--CHHHHHHHHHHHHTCEEEEEESGGGTC
T ss_pred             EEeC--CHHHHHHHHHHHhCCeEEEEeeccCCC
Confidence            6675  799999999999999999987665543

>d1r9ca_ d.32.1.2 (A:) Fosfomycin resistance protein FosX {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein FosX
species: Mesorhizobium loti [TaxId: 381]

Probab=96.75  E-value=0.0011  Score=38.44  Aligned_cols=29  Identities=17%  Similarity=0.209  Sum_probs=24.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      |.|+  |..++++||+++||.+.+.+...++
T Consensus        10 l~v~--d~~~s~~FY~~~lG~~~~~~~~~~~   38 (130)
T d1r9ca_          10 FIVR--DLERMTRILEGVFDAREVYASDTEQ   38 (130)
T ss_dssp             EEES--CHHHHHHHHHHHHCCEEEEEGGGST
T ss_pred             EEeC--CHHHHHHHHHHhcCCEEEEEcCCcc
Confidence            6775  7999999999999999998866554

>d1xqaa_ d.32.1.2 (A:) Hypothetical protein BC3580 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypothetical protein BC3580
species: Bacillus cereus [TaxId: 1396]

Probab=96.33  E-value=0.0031  Score=35.31  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      |.|+  |-.++++||++.||.+...|.
T Consensus         9 l~v~--Dl~~a~~FY~~~lG~~~~~~~   33 (113)
T d1xqaa_           9 LTVA--DVVAAREFLEKYFGLTCSGTR   33 (113)
T ss_dssp             EEES--CHHHHHHHHHHHHCCEEEEEE
T ss_pred             EEeC--CHHHHHHHHHHhhCCEEEEee
Confidence            6775  799999999999999988773

>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.27  E-value=0.0027  Score=36.42  Aligned_cols=28  Identities=25%  Similarity=0.348  Sum_probs=24.6

Q ss_pred             cceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           12 GMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .++|.|.|+  |-+++++||++ ||.+...+
T Consensus         3 ~~~p~l~v~--Dl~~s~~FY~~-LGf~~~~~   30 (120)
T d1ecsa_           3 QATPNLPSR--DFDSTAAFYER-LGFGIVFR   30 (120)
T ss_dssp             EEEEEEEES--CHHHHHHHHHT-TTCEEEEE
T ss_pred             eEEEEEEeC--CHHHHHHHHHH-cCCeeEEe
Confidence            478999997  79999999987 99988765

>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=96.17  E-value=0.0036  Score=38.37  Aligned_cols=32  Identities=3%  Similarity=0.157  Sum_probs=27.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCcch
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRKA   50 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~   50 (71)
                      |.|+  |-.++++||+++||.+.+.|...+++..
T Consensus        11 l~v~--Dle~s~~FY~~vLG~~~~~~~~~~~~~~   42 (162)
T d1mpya2          11 MYGD--ELPATYDLFTKVLGFYLAEQVLDENGTR   42 (162)
T ss_dssp             EEES--CHHHHHHHHHHTTCCEEEEEEECTTCCE
T ss_pred             EECC--CHHHHHHHHHHccCCEEEEEEccccccc
Confidence            7776  7999999999999999988887777653

>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=96.12  E-value=0.0024  Score=37.54  Aligned_cols=29  Identities=14%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETK   47 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd   47 (71)
                      |.|+  |-.++++||+++||.+.+.|..+.+
T Consensus        12 l~v~--Dl~~s~~FY~~vLG~~~~~~~~~~~   40 (144)
T d1zswa1          12 MVTK--NANENNHFYKNVLGLRRVKMTVNQD   40 (144)
T ss_dssp             EEES--CHHHHHHHHHTTTCCEEEEEEEETT
T ss_pred             EEeC--CHHHHHHHHHHHhCCeeEeeecccc
Confidence            6775  7999999999999999888765444

>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypotheical protein SP0731
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.01  E-value=0.002  Score=37.37  Aligned_cols=24  Identities=8%  Similarity=-0.028  Sum_probs=20.6

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |..+|++||+++||.+....
T Consensus         8 i~V~--di~~a~~FYe~~lg~~~~~~   31 (115)
T d2i7ra1           8 IIVS--NVPQVCADLEHILDKKADYA   31 (115)
T ss_dssp             EECS--CHHHHHHHHHHHHTSCCSEE
T ss_pred             EEEC--CHHHHHHHHHHhhCCceeee
Confidence            7886  79999999999999987643

>d1mpya1 d.32.1.3 (A:1-145) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=95.95  E-value=0.0046  Score=36.33  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.1

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      .|.|+  |-.++++||+++||.++..|
T Consensus        12 ~l~v~--D~~~s~~FY~~vLG~~~~~~   36 (145)
T d1mpya1          12 QLRVL--DMSKALEHYVELLGLIEMDR   36 (145)
T ss_dssp             EEEES--CHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEeC--CHHHHHHHHHHhhCCEEEEe
Confidence            37785  79999999999999998876

>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein YycE
domain: Hypothetical protein YycE
species: Bacillus subtilis [TaxId: 1423]

Probab=95.80  E-value=0.0018  Score=38.36  Aligned_cols=30  Identities=13%  Similarity=0.138  Sum_probs=25.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG   48 (71)
                      |.|+  |-+++++||+++||.+++.|..+++|
T Consensus        15 ~pv~--Dle~s~~FY~~vLG~~~~~~~~~~~~   44 (137)
T d1twua_          15 RPTG--QLDEIIRFYEEGLCLKRIGEFSQHNG   44 (137)
T ss_dssp             EECS--CHHHHHHHHTTTSCCCEEEEEEEETT
T ss_pred             cccC--CHHHHHHHHHhccCCceeeeeccccc
Confidence            3465  79999999999999999988776665

>d1lgta1 d.32.1.3 (A:2-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]

Probab=95.61  E-value=0.0072  Score=35.75  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             eecccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456            6 TSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus         6 ~~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      +.+++-+    |.|+  |-.++++||++++|.++..+
T Consensus         3 ~~l~hv~----i~V~--Dl~~s~~FY~~vLG~~~~~~   33 (131)
T d1lgta1           3 RSLGYMG----FAVS--DVAAWRSFLTQKLGLMEAGT   33 (131)
T ss_dssp             EEEEEEE----EEES--CHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccEEE----EEeC--CHHHHHHHHHHhhCCceeec
Confidence            3445555    6775  79999999999999998765

>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.49  E-value=0.0087  Score=34.73  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=22.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      |.|+  |-.++++||+++||.+...+.+
T Consensus        10 l~v~--d~~~~~~FY~~~lG~~~~~~~~   35 (134)
T d1nkia_          10 LAVA--DLPASIAFYRDLLGFRLEARWD   35 (134)
T ss_dssp             EEES--CHHHHHHHHHHTTCCEEEEEET
T ss_pred             EEeC--CHHHHHHHHHHhhCCeEEEecc
Confidence            7775  7999999999999999887633

>d1npba_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Serratia marcescens [TaxId: 615]

Probab=94.86  E-value=0.012  Score=34.34  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |.+++++||++.||.+.+.+
T Consensus        10 l~v~--d~~~~~~FY~~vLG~~~~~~   33 (140)
T d1npba_          10 LAVS--DLQKSVTFWHELLGLTLHAR   33 (140)
T ss_dssp             EEES--CHHHHHHHHHTTSCCEEEEE
T ss_pred             EEeC--CHHHHHHHHHHHhCCEEEEE
Confidence            6675  79999999999999988755

>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein BC1747
domain: Hypothetical protein BC1747
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=94.73  E-value=0.015  Score=33.56  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNME   45 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~   45 (71)
                      |.|+  |-.++++||++ +|.+++.|.+.
T Consensus        15 i~v~--Dle~s~~FY~~-LG~~~~~~~~~   40 (149)
T d1ss4a_          15 IVVE--SLDNAISFFEE-IGLNLEGRANV   40 (149)
T ss_dssp             EECS--CHHHHHHHHHH-HTCEEEEEEEE
T ss_pred             EEeC--CHHHHHHHHHH-cCCcEeeeecc
Confidence            6675  79999999998 99998887543

>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=94.58  E-value=0.019  Score=35.61  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=26.1

Q ss_pred             ecccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456            7 STNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus         7 ~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      ..|++-|+  |.|.  |..++++||+++||.+++.|
T Consensus        10 I~Gl~HV~--L~V~--Dle~s~~FY~~vLG~~~~~~   41 (170)
T d1zswa2          10 IQGMGSVE--LTVR--RLDKMASTLTEIFGYTEVSR   41 (170)
T ss_dssp             CCEEEEEE--EEES--CHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCeeeEE--EEeC--CHHHHHHHHHHHhCCEEEee
Confidence            34555543  8886  79999999999999999877

>d1f1ua1 d.32.1.3 (A:2-147) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.46  E-value=0.017  Score=34.46  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.8

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-+++++||+++||.+...+
T Consensus        22 l~v~--Dl~~s~~FY~~~lG~~~~~~   45 (146)
T d1f1ua1          22 IVVT--DLAKSREFYVDVLGLHVTEE   45 (146)
T ss_dssp             EEES--CHHHHHHHHTTTTCCEEEEE
T ss_pred             EEeC--CHHHHHHHHHhccCcEEEee
Confidence            7775  79999999999999999876

>d1f1ua2 d.32.1.3 (A:148-323) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.35  E-value=0.027  Score=35.19  Aligned_cols=31  Identities=3%  Similarity=-0.012  Sum_probs=25.7

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecCCCcch
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRKA   50 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~   50 (71)
                      |.|+  |-+++++|| ++||.+...|+..++|..
T Consensus        11 l~v~--Dle~s~~FY-e~LGf~~~d~~~~~~~~~   41 (176)
T d1f1ua2          11 QVTP--DVPRGRAYL-EDLGFRVSEDIKDSDGVT   41 (176)
T ss_dssp             EEES--CHHHHHHHH-HHTTCEEEEEEECTTCCE
T ss_pred             EEcC--CHHHHHHHH-HHCCCEEEEEEecCCcce
Confidence            6675  799999999 689999988888887653

>d1kw3b1 d.32.1.3 (B:1-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.25  E-value=0.038  Score=32.56  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISR   42 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R   42 (71)
                      |.|+  |-.++.+||+++||.++..|
T Consensus        10 i~v~--Dl~~s~~FY~~vLG~~~~~~   33 (132)
T d1kw3b1          10 FAVK--DVPAWDHFLTKSVGLMAAGS   33 (132)
T ss_dssp             EEES--CHHHHHHHHHHTTCCEEEEE
T ss_pred             EEeC--CHHHHHHHHHHHhCCceecc
Confidence            5664  89999999999999998876

>d1kw3b2 d.32.1.3 (B:133-288) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.16  E-value=0.013  Score=35.96  Aligned_cols=27  Identities=19%  Similarity=0.114  Sum_probs=22.2

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeecC
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNME   45 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~   45 (71)
                      |.|+  |..++++||+++||.+...++..
T Consensus        16 l~v~--D~e~t~~FY~~vLG~~~~~~~~~   42 (156)
T d1kw3b2          16 RCVP--DTAKAMAFYTEVLGFVLSDIIDI   42 (156)
T ss_dssp             EECS--CHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EecC--CHHHHHHHHHHhcCceeeeEEee
Confidence            5665  79999999999999988766543

>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=90.95  E-value=0.071  Score=34.91  Aligned_cols=32  Identities=19%  Similarity=0.027  Sum_probs=22.9

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee--cCCCc
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN--METKR   48 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl--~~PdG   48 (71)
                      +.|...+-.++++||+++||.++..+.  .++++
T Consensus        11 ~~V~~~~l~~a~~FY~~vlGf~~~~~~di~~~~~   44 (203)
T d1cjxa2          11 HNVYRGRMVYWANFYEKLFNFREARYFDIKGEYT   44 (203)
T ss_dssp             EECCTTHHHHHHHHHHHHHCCEEEEEEEEECSSC
T ss_pred             eccChhhHHHHHHHHHHHhCCEEeEEEecCCCcc
Confidence            455322578999999999999988663  34444

>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Mitomycin resistance protein D, MRD
species: Streptomyces lavendulae [TaxId: 1914]

Probab=90.04  E-value=0.057  Score=30.81  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=18.5

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRNM   44 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~   44 (71)
                      |.|+  |..++++||++ +|........
T Consensus         8 l~V~--D~~~s~~FY~~-Lg~~~~~~~~   32 (128)
T d1klla_           8 VVVE--DMAKSMEFYRK-MGVEIPAEAD   32 (128)
T ss_dssp             EEES--CHHHHHHHHHH-TTCCCCTTGG
T ss_pred             EEcC--CHHHHHHHHHH-hCCccccccc
Confidence            7886  79999999966 7766544333

>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=89.59  E-value=0.17  Score=33.73  Aligned_cols=25  Identities=12%  Similarity=0.041  Sum_probs=20.6

Q ss_pred             EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456           17 LLVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      +.|  +|-.+|++||+++||.+++.+.
T Consensus        15 i~V--~dld~a~~fY~~vLGf~~~~~~   39 (224)
T d1sp8a2          15 GNV--PELAPAAAYFAGFTGFHEFAEF   39 (224)
T ss_dssp             EEC--SCHHHHHHHHHHHHCCEEEEEE
T ss_pred             Eec--cCHHHHHHHHHHHhCCEEEEEe
Confidence            456  4799999999999999887654

>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Putative acetyltransferase EF0945
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.97  E-value=0.32  Score=28.25  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=24.9

Q ss_pred             EEEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456           16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKRK   49 (71)
Q Consensus        16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk   49 (71)
                      +|.|.. +-..|+.||++ ||.+++.++..++..
T Consensus       149 ~l~v~~-~N~~a~~~Yek-~GF~~~~~~~~~~~~  180 (189)
T d1u6ma_         149 GLNVDF-DNPGARKLYAS-KGFKDVTTMTISGHL  180 (189)
T ss_dssp             EEEEET-TCHHHHHHHHT-TTCEEEEEEEETTEE
T ss_pred             EEEEcC-CCHHHHHHHHH-CCCEEEEEEEECCcE
Confidence            477763 55679999986 999999988776654

>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=88.31  E-value=0.084  Score=34.87  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             EEecCChhHHHHHHHHhhCcEEEEee
Q 047456           18 LVEASKATGSVQFYEIAFGAVEISRN   43 (71)
Q Consensus        18 vV~~~~Aa~AI~FYk~AFGA~Ev~Rl   43 (71)
                      .|...+-.+|++||+++||.++..+.
T Consensus        13 avp~~~l~~av~fY~~vfGf~~~~~~   38 (199)
T d1t47a2          13 NVELGRMNEWVGFYNKVMGFTNMKEF   38 (199)
T ss_dssp             ECCTTCHHHHHHHHHHHHCCEECSCC
T ss_pred             ccChhhHHHHHHHHHHHhCCeEeeEe
Confidence            45322788999999999999876553

>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.27  Score=32.52  Aligned_cols=24  Identities=4%  Similarity=-0.018  Sum_probs=18.5

Q ss_pred             EEecCChhHHHHHHHHhhCcEEEE
Q 047456           18 LVEASKATGSVQFYEIAFGAVEIS   41 (71)
Q Consensus        18 vV~~~~Aa~AI~FYk~AFGA~Ev~   41 (71)
                      .|.+.+-.+|++||+++||.++..
T Consensus        31 ~Vp~~~ld~av~fY~~vfGf~~~~   54 (210)
T d1sqia2          31 NQPDQEMESASEWYLKNLQFHRFW   54 (210)
T ss_dssp             ECCTTCHHHHHHHHHHHHCCEEEC
T ss_pred             ccCchhHHHHHHHHHHHhCCEEEE
Confidence            454334899999999999997653