Citrus Sinensis ID: 047457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MNPKRYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQWAPPAAGLSLPNPNPHKI
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHcHEEEcccHEHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mnpkrydyteVTNQIRDKIWIESKKvwciagpapfsLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVaelsgyagpALILAFSfplqnscmqsqLKSRVIAWSFLVAVLSRCVLvyvpdfgvfgaAAAFDISGWVSVFGMFgysvfggcpltrngfsmrafSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCfvmslgwqwappaaglslpnpnphki
Flexible Loop (DISEMBL)
mnpkrydytevtNQIRDKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQWAPpaaglslpnpnphki
Low Complexity Region (SEG)
MNPKRYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGaaaaFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQWAPPAAGLSLPNPNPHKI
Disordered region (IsUnstruct)
******DYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQWAPP**************
Disordered Region (DISOPRED)
*******************WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQWAPPAAGLS**NP*****
Disordered Region (DISEMBL)
MNPKRYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQWAPPAAGLSLPNPNPHKI
Disordered Region (DISPRO)
*NPKRYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQWAPPAAGLSLPNPN****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPKRYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQWAPPAAGLSLPNPNPHKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.651	0.301	0.337	4e-10

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 50  FDCHLYVLAAAILKYLSQRDEVAELSGYAGPALI-----LAFSFPLQNSCMQSQLKSRVI 104
           F   LY  +  ILK + Q   +A         +I      A + P+Q   +Q+Q     +
Sbjct: 146 FLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQR-FLQAQNIVNPL 204

Query: 105 AWS----FLVAVLSRCVLVYVPDFGVFGAAAAFDISGW--VSVFGMFGYSVFGGCPLTRN 158
           A+     FL+  L   ++  V DFG+ GAA     S W  V+V GM+   +   C  T  
Sbjct: 205 AYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMY-ILMSPNCKETWT 263

Query: 159 GFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATL 204
           GFS RAF GIW + KL+ A+ VMLCLE  Y + L++++  L N T+
Sbjct: 264 GFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTI 309

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
224067013	492	predicted protein [Populus trichocarpa]	0.817	0.390	0.511	9e-38
356508053	503	PREDICTED: protein TRANSPARENT TESTA 12	0.817	0.381	0.459	6e-37
302142014	521	unnamed protein product [Vitis vinifera]	0.714	0.322	0.505	5e-35
359492469	490	PREDICTED: protein TRANSPARENT TESTA 12-	0.714	0.342	0.505	5e-35
255545860	497	multidrug resistance pump, putative [Ric	0.812	0.384	0.473	8e-35
224097194	488	predicted protein [Populus trichocarpa]	0.812	0.391	0.452	2e-34
357465151	504	Ripening regulated protein DDTFR18 [Medi	0.714	0.333	0.516	3e-34
255586695	507	multidrug resistance pump, putative [Ric	0.931	0.431	0.379	1e-33
224067011	486	predicted protein [Populus trichocarpa]	0.744	0.360	0.473	8e-33
356497726	491	PREDICTED: protein TRANSPARENT TESTA 12-	0.744	0.356	0.463	3e-32

>gi|224067013|ref|XP_002302326.1| predicted protein [Populus trichocarpa] gi|222844052|gb|EEE81599.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 128/209 (61%), Gaps = 17/209 (8%)

Query: 31  GPAPFSLLAAYCPNILLQAFDC-----HLYVLAAAILKYLSQRDEVAELSGYAGPALI-- 83
           G   + +L  Y     +  F C       YV AA +LK+L Q D+VAE SG     LI  
Sbjct: 111 GAKRYHMLGIYMQRSWIVLFFCCFLLLPFYVFAAPLLKFLGQPDDVAEQSGLVALWLIPL 170

Query: 84  ---LAFSFPLQNSCMQSQLKSRVIAW----SFLVAVLSRCVLVYVPDFGVFGAAAAFDIS 136
               AF FPLQ   +QSQLK++VIAW    S  V VL+  +LVYV DFGV GAA A DIS
Sbjct: 171 HFSFAFQFPLQR-FLQSQLKNQVIAWISLASLGVNVLTSWLLVYVLDFGVIGAAIALDIS 229

Query: 137 GWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT 196
            WV V G+F Y+  G CP T  GFS +AF G+W+FVKLSAA+GVMLCLEN Y RILI+MT
Sbjct: 230 WWVIVIGLFIYTSCGWCPSTWTGFSAQAFCGLWEFVKLSAASGVMLCLENWYYRILILMT 289

Query: 197 EYLKNATLIICGCFV-MSL-GWQWAPPAA 223
            Y KNATL +    V MS+ GW+   P A
Sbjct: 290 GYFKNATLAVDALSVCMSINGWEIMIPLA 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508053|ref|XP_003522776.1| PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max]

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 129/209 (61%), Gaps = 17/209 (8%)

Query: 31  GPAPFSLLAAYCPNILLQAFDC-----HLYVLAAAILKYLSQRDEVAELSGYAGPALI-- 83
           G   + LL  Y     +  F C       YV A  +LK+L Q D+VAE SG     LI  
Sbjct: 117 GAKRYHLLGIYMQRSWIVLFMCCFLLLPFYVFATPLLKFLGQPDDVAEWSGVVAVWLIPL 176

Query: 84  ---LAFSFPLQNSCMQSQLKSRVIAW----SFLVAVLSRCVLVYVPDFGVFGAAAAFDIS 136
               AF FP+Q   +Q QLK+ VIAW      +V V++  + +YV DFG++GAA + DIS
Sbjct: 177 HFSFAFQFPMQR-FLQCQLKTAVIAWVSLLGLVVNVVTSWLFIYVWDFGLYGAAISLDIS 235

Query: 137 GWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT 196
            WV VFGM+ Y  +GGCPLT NGFS+ AFSG+W+F+ LS+A+GVMLCLEN Y +IL++MT
Sbjct: 236 WWVLVFGMYAYIAYGGCPLTWNGFSLEAFSGLWEFLTLSSASGVMLCLENWYYKILLLMT 295

Query: 197 EYLKNATLIICGCFV-MSL-GWQWAPPAA 223
             L+NAT+ +    V M++ GW+   P A
Sbjct: 296 GQLENATIAVDALSVCMTINGWEMMIPLA 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 115/180 (63%), Gaps = 12/180 (6%)

Query: 55  YVLAAAILKYLSQRDEVAELSGYAGPALI-----LAFSFPLQNSCMQSQLKSRVIAW--- 106
           YV A  +LK L Q D+VAE SG     LI      AF FPLQ   +QSQLK+ VIAW   
Sbjct: 168 YVFATPLLKLLGQPDDVAEQSGLVALCLIPLHFSFAFQFPLQR-FLQSQLKTGVIAWVSL 226

Query: 107 -SFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAF 165
            +F++ V    + VY  +FG+ G A   + S W+ VFGM GY+V GGCPL+  GFSM+AF
Sbjct: 227 VAFVIHVFISWLFVYKLEFGIIGTAITLNFSWWILVFGMLGYTVCGGCPLSWTGFSMQAF 286

Query: 166 SGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFV-MSL-GWQWAPPAA 223
           SG+W+FVKLS A+GVMLCLEN Y RILI+MT   KNA + +    V M++ GW+   P A
Sbjct: 287 SGLWEFVKLSTASGVMLCLENWYYRILILMTGNWKNAEVAVDALSVCMTINGWEMMIPLA 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 115/180 (63%), Gaps = 12/180 (6%)

Query: 55  YVLAAAILKYLSQRDEVAELSGYAGPALI-----LAFSFPLQNSCMQSQLKSRVIAW--- 106
           YV A  +LK L Q D+VAE SG     LI      AF FPLQ   +QSQLK+ VIAW   
Sbjct: 137 YVFATPLLKLLGQPDDVAEQSGLVALCLIPLHFSFAFQFPLQR-FLQSQLKTGVIAWVSL 195

Query: 107 -SFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAF 165
            +F++ V    + VY  +FG+ G A   + S W+ VFGM GY+V GGCPL+  GFSM+AF
Sbjct: 196 VAFVIHVFISWLFVYKLEFGIIGTAITLNFSWWILVFGMLGYTVCGGCPLSWTGFSMQAF 255

Query: 166 SGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFV-MSL-GWQWAPPAA 223
           SG+W+FVKLS A+GVMLCLEN Y RILI+MT   KNA + +    V M++ GW+   P A
Sbjct: 256 SGLWEFVKLSTASGVMLCLENWYYRILILMTGNWKNAEVAVDALSVCMTINGWEMMIPLA 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545860|ref|XP_002513990.1| multidrug resistance pump, putative [Ricinus communis] gi|223547076|gb|EEF48573.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 128/209 (61%), Gaps = 18/209 (8%)

Query: 31  GPAPFSLLAAYCPNILLQAFDCH-----LYVLAAAILKYLSQRDEVAELSGYAGPALI-- 83
           G   + +L  Y     +  F C      +YV A+ ILK L Q ++VAE SG     L+  
Sbjct: 112 GAKRYHMLGIYMQRSWIVLFLCSFLLLPVYVCASPILKLLGQPEDVAEGSGIVAIWLLPL 171

Query: 84  ---LAFSFPLQNSCMQSQLKSRVIAWSFLVA----VLSRCVLVYVPDFGVFGAAAAFDIS 136
               AF FPLQ   +QSQLK+++IAW  LVA    V +  + +Y  DFGV GAA A D+S
Sbjct: 172 HFSFAFLFPLQR-FLQSQLKNQIIAWVALVALGISVFTSWLFIYTLDFGVVGAAIALDVS 230

Query: 137 GWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT 196
            W  VF +F Y  FG CPLT  GFSM+AFSG+W+F++LS A+GVMLCLEN Y RIL++MT
Sbjct: 231 WWFMVFSLFVYVRFG-CPLTWTGFSMQAFSGLWEFLQLSVASGVMLCLENWYYRILVLMT 289

Query: 197 EYLKNATLIICGCFV-MSL-GWQWAPPAA 223
            Y+KNAT+ I    V MS+ GW+   P A
Sbjct: 290 GYMKNATVAIDALSVCMSISGWEIMIPLA 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 123/210 (58%), Gaps = 19/210 (9%)

Query: 31  GPAPFSLLAAYCPNILLQAFDC-----HLYVLAAAILKYLSQRDEVAELSGYAGPALI-- 83
           G   + +L  Y     +  F C      LY+ A+ +LK L Q +++AELSG A   +I  
Sbjct: 111 GAKKYYMLGVYMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPL 170

Query: 84  ---LAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRC----VLVYVPDFGVFGAAAAFDIS 136
               AF FPLQ   +QSQLK+ VIAW   VA++       +LVY    GV G A   + S
Sbjct: 171 HFSFAFQFPLQR-FLQSQLKNMVIAWVSFVALVVHIFVSWLLVYKLQLGVAGTAMTLNFS 229

Query: 137 GWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT 196
            WV VFG+ GY++ GGCPLT  GFS  AFSG+W+F KLSAA+GVMLCLEN Y RILI+MT
Sbjct: 230 WWVLVFGLLGYTICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMT 289

Query: 197 EYLKNATLIICG---CFVMSLGWQWAPPAA 223
             LKNA + +     C  ++ GW+   P A
Sbjct: 290 GNLKNAEIAVDALSICMTIN-GWEMMIPLA 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465151|ref|XP_003602857.1| Ripening regulated protein DDTFR18 [Medicago truncatula] gi|355491905|gb|AES73108.1| Ripening regulated protein DDTFR18 [Medicago truncatula]

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/180 (51%), Positives = 117/180 (65%), Gaps = 12/180 (6%)

Query: 55  YVLAAAILKYLSQRDEVAELSGYAGPALI-----LAFSFPLQNSCMQSQLKSRVIAWSFL 109
           Y+ A  ILK L Q D+VAE SG     LI      AF FPLQ   +Q QLK+ VIAW  L
Sbjct: 147 YIFATPILKLLGQPDDVAEWSGIVAIWLIPLHFSFAFQFPLQR-FLQCQLKTGVIAWVSL 205

Query: 110 VAVLSRC----VLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAF 165
           V ++       +L++V DFG+ GAA A D+S W+ VFGM  Y+V GGCPLT  GFS+ AF
Sbjct: 206 VGLVVNVVLSWLLIFVWDFGLIGAAIALDVSWWILVFGMLAYTVCGGCPLTWTGFSIEAF 265

Query: 166 SGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFV-MSL-GWQWAPPAA 223
           SG+WDF KLS A+GVMLCLEN Y RIL++MT  L+NAT+ +    V M++ GW+   P A
Sbjct: 266 SGLWDFFKLSFASGVMLCLENWYYRILLLMTGQLENATVAVDALSVCMTINGWEMMIPLA 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586695|ref|XP_002533973.1| multidrug resistance pump, putative [Ricinus communis] gi|223526045|gb|EEF28411.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 143/298 (47%), Gaps = 79/298 (26%)

Query: 4   KRYDYTEVTNQIRDKIWIESKKVWCIAGPA------PFSLL------AAYCPNILL---- 47
           ++ +  ++   +  K+WIESKK+W IAGPA       FS+L      A +  N+ L    
Sbjct: 16  RKVEEDDIELSLSRKVWIESKKLWEIAGPAIFSRVASFSMLVITQAFAGHLGNLELAAIS 75

Query: 48  --------------------------QAFDCHLYVL------------------------ 57
                                     QAF    Y +                        
Sbjct: 76  IANNVIVGFDFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFLCCVLLLPLYL 135

Query: 58  -AAAILKYLSQRDEVAELSGYAGPALI-----LAFSFPLQNSCMQSQLKSRVIAWSFLVA 111
            A+ +L  L Q  +VAELSG     LI      AF FPLQ   +Q QLK+ V A   LVA
Sbjct: 136 FASPVLTLLGQPKDVAELSGVVSIYLIPLHFSFAFQFPLQR-FLQCQLKNTVTALISLVA 194

Query: 112 ----VLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSG 167
               V+   + VY    GV G A   + S WV VFG  GY +FGGCPLT NGFS+ AFSG
Sbjct: 195 LAVHVIVSWLFVYKLHLGVIGTAMTLNFSWWVLVFGHLGYIIFGGCPLTWNGFSIEAFSG 254

Query: 168 IWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFV-MSL-GWQWAPPAA 223
           +WDF KLSAA+GVMLCLEN Y RILI+MT  LKNA + +    + MS+ GW+   P A
Sbjct: 255 LWDFTKLSAASGVMLCLENWYYRILILMTGNLKNAKIAVDALSICMSINGWEMMIPLA 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067011|ref|XP_002302325.1| predicted protein [Populus trichocarpa] gi|222844051|gb|EEE81598.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 120/192 (62%), Gaps = 17/192 (8%)

Query: 55  YVLAAAILKYLSQRDEVAELSGYAGPALI-----LAFSFPLQNSCMQSQLKSRVIAWSFL 109
           YV A  +LK L Q DEVA+++G     LI      AF FPL+ + +QSQLK++V AW  L
Sbjct: 135 YVFATPLLKRLGQADEVAKMAGAVALWLIPLHFSFAFLFPLR-TFLQSQLKNQVTAWVSL 193

Query: 110 VAV----LSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAF 165
           V++    L+  + VY  DFG+ G A A DIS W    G+F Y   G CP T  GFS++AF
Sbjct: 194 VSLGINALTSWLFVYELDFGIVGVAIALDISWWALTLGLFVYCSCGRCPSTWTGFSVQAF 253

Query: 166 SGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVM--SLGWQWAPP-- 221
           SG+W+FVKLS A+GVMLCLEN Y RILI+MT +LKN+TL +    V   ++GW+   P  
Sbjct: 254 SGLWEFVKLSVASGVMLCLENWYYRILIIMTGHLKNSTLAVDALSVCMGTIGWELMIPLA 313

Query: 222 ---AAGLSLPNP 230
              AAG+ + N 
Sbjct: 314 FYAAAGVRVSNE 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 116/190 (61%), Gaps = 15/190 (7%)

Query: 31  GPAPFSLLAAYCPNILLQAFDC-----HLYVLAAAILKYLSQRDEVAELSGYAGPALI-- 83
           G   + +L  Y     +  F C      LY+ A+ +LK L Q +E+AELSG     +I  
Sbjct: 110 GAKKYYMLGVYMQRSWIVLFICCIFLLPLYLFASPVLKLLGQPEELAELSGAVSIWMIPV 169

Query: 84  ---LAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRC----VLVYVPDFGVFGAAAAFDIS 136
               AF FPLQ   +Q QLK+  IAW  LVA++       + V+   FGV GAAA  + S
Sbjct: 170 HFAFAFQFPLQR-FLQCQLKTAPIAWVSLVALVVHVFVSWLFVFKLQFGVVGAAATINFS 228

Query: 137 GWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT 196
            WV   G+FGY V+GGCP T +GFS+ AFSG+W+F+KLSAAAGVMLCLEN Y +ILI+MT
Sbjct: 229 WWVLTLGLFGYVVWGGCPHTWSGFSVEAFSGLWEFLKLSAAAGVMLCLENWYYKILIVMT 288

Query: 197 EYLKNATLII 206
             L+NA + +
Sbjct: 289 GNLENAEIAV 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2172477	491	AT5G44050 "AT5G44050" [Arabido	0.719	0.344	0.436	2.7e-38
TAIR|locus:2168210	486	AT5G65380 "AT5G65380" [Arabido	0.817	0.395	0.397	6.9e-30
TAIR|locus:2142544	489	AT5G10420 [Arabidopsis thalian	0.817	0.392	0.373	6.1e-27
TAIR|locus:2206960	494	AT1G33110 "AT1G33110" [Arabido	0.646	0.307	0.314	1.8e-22
TAIR|locus:2037980	494	AT1G33090 "AT1G33090" [Arabido	0.651	0.309	0.322	7.9e-22
TAIR|locus:2037960	494	AT1G33080 "AT1G33080" [Arabido	0.651	0.309	0.322	2.1e-21
TAIR|locus:2089955	506	AT3G21690 "AT3G21690" [Arabido	0.685	0.318	0.352	8.1e-20
TAIR|locus:2175916	497	AT5G17700 "AT5G17700" [Arabido	0.685	0.323	0.341	1.5e-19
TAIR|locus:2126036	542	AT4G00350 "AT4G00350" [Arabido	0.787	0.341	0.325	2e-17
TAIR|locus:2036848	501	AT1G61890 "AT1G61890" [Arabido	0.646	0.303	0.319	2.9e-17

TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
 Identities = 79/181 (43%), Positives = 114/181 (62%)

Query:    54 LYVLAAAILKYLSQRDEVAELSG----YAGPA-LILAFSFPLQNSCMQSQLKSRVIAWSF 108
             +Y+ A  ILK++ Q D++AELSG    +A P     AF FP+ N  +Q QLK+ VIA S 
Sbjct:   139 MYIFATPILKFMGQPDDIAELSGIISVWAIPTHFSFAFFFPI-NRFLQCQLKNSVIAISS 197

Query:   109 ---LVAVLSRCVL-VYVPDFGVFGXXXXFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRA 164
                LV  +  C L VYV + GV G     ++S W++VF +F Y+  GGCPLT  GFSM +
Sbjct:   198 GVSLVVHIFVCWLFVYVLELGVIGTIATANVSWWLNVFILFTYTTCGGCPLTWTGFSMES 257

Query:   165 FSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFV-MSL-GWQWAPPA 222
             F+ +W+F KLSA++G+M+CLEN Y R+LI+MT  L++A + +    + MS+ G +   P 
Sbjct:   258 FTRLWEFTKLSASSGIMVCLENWYYRMLIVMTGNLEDARIDVDSMSICMSINGLEMMVPL 317

Query:   223 A 223
             A
Sbjct:   318 A 318

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.9e-30, P = 6.9e-30
 Identities = 83/209 (39%), Positives = 119/209 (56%)

Query:    31 GPAPFSLLAAYCPNILLQAFDCHL-----YVLAAAILKYLSQRDEVAELSGYAGPALI-- 83
             G   + +L  Y     +  F C +     Y+    +LK+L Q D++AELSG     +I  
Sbjct:   108 GAKKYHMLGVYMQRSWIVLFFCCVLLLPTYIFTTPVLKFLGQPDDIAELSGVVAIWVIPL 167

Query:    84 -LAF--SFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYV-PD---FGVFGXXXXFDIS 136
               AF  SFPLQ   +Q QLK+RV A++  VA++   ++ ++  D    GV G      IS
Sbjct:   168 HFAFTLSFPLQRF-LQCQLKNRVTAYAAAVALVVHILVCWLFVDGLKLGVVGTVATISIS 226

Query:   137 GWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT 196
              WV+V  +  YS  GGCPLT  G S  A +G+W+F+KLSA++GVMLCLEN Y RILI+MT
Sbjct:   227 WWVNVLILLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSGVMLCLENWYYRILIIMT 286

Query:   197 EYLKNATLIICGCFV-MSL-GWQWAPPAA 223
               L+NA + +    + M++ GW+   P A
Sbjct:   287 GNLQNARIAVDSLSICMAINGWEMMIPLA 315

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 6.1e-27, P = 6.1e-27
 Identities = 78/209 (37%), Positives = 114/209 (54%)

Query:    31 GPAPFSLLAAYCPNILLQAFDC-----HLYVLAAAILKYLSQRDEVAELSG----YAGPA 81
             G   + +L  Y     +  F C      +Y+ A  ILK++ Q D++AEL+G    +  P 
Sbjct:   109 GAREYYMLGVYMQRYWIILFLCCILLLPMYLFATPILKFIGQSDDIAELTGTIALWVIPV 168

Query:    82 -LILAFSFPLQNSCMQSQLKSRVIAWS----FLVAVLSRCVLVYVPDFGVFGXXXXFDIS 136
                 AF FPL N  +Q QLK++VIA S      V +L     VY    G+ G     ++ 
Sbjct:   169 HFAFAFFFPL-NRFLQCQLKNKVIAISAGVSLAVHILVCWFFVYGYKLGIIGTMASVNVP 227

Query:   137 GWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT 196
              W+++F +F YS  GGC LT  GFS  AF+G+ +  KLSA++G+MLCLEN Y +IL++MT
Sbjct:   228 WWLNIFILFLYSTRGGCTLTWTGFSSEAFTGLLELTKLSASSGIMLCLENWYYKILMLMT 287

Query:   197 EYLKNATLIICGCFV-MSL-GWQWAPPAA 223
               L NA + +    + MS+ GW+   P A
Sbjct:   288 GNLVNAKIAVDSLSICMSVNGWEMMIPLA 316

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 51/162 (31%), Positives = 86/162 (53%)

Query:    54 LYVLAAAILKYLSQRDEVAELSGYAGPALI-LAFSFPLQNSC---MQSQLKSRVIAWSFL 109
             +Y+ +  IL  L Q + +  ++      +I + FSF    +C   +Q+Q K+++IA+   
Sbjct:   135 VYIFSGPILLALGQEERIVRVARIIALWVIGINFSFVPSFTCQMFLQAQSKNKIIAYVAA 194

Query:   110 VAV-----LSRCVLVYVPDFGVFGXXXXFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRA 164
             V++     LS  ++V+  +FG+ G      ++ W+       +   GGC  T  GFSM A
Sbjct:   195 VSLGVHVFLSWLLMVHF-NFGITGAMTSTLVAFWLPNIAQLLFVTCGGCKDTWRGFSMMA 253

Query:   165 FSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLII 206
             F  +W   KLS ++G MLCLE  Y  IL+++T  LKNA + +
Sbjct:   254 FKDLWPVFKLSMSSGGMLCLELWYNSILVLLTGNLKNAEVAL 295

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 7.9e-22, Sum P(2) = 7.9e-22
 Identities = 52/161 (32%), Positives = 82/161 (50%)

Query:    54 LYVLAAAILKYLSQRDEVAELSGYAGPALI-LAFSFPLQNSC---MQSQLKSRVIAWSFL 109
             +++ +  IL  L Q D +  ++      LI + F+F    +C   +QSQ K+++IA+   
Sbjct:   135 IFIFSGPILLALGQEDHIVRVARVIALWLIAINFTFVPAFTCQIFLQSQSKNKIIAYVSA 194

Query:   110 VA----VLSRCVLVYVPDFGVFGXXXXFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAF 165
             V     V    +LV   +FG+ G      ++ W+       Y   GGC  T  GF+M AF
Sbjct:   195 VTLGLHVFFSWLLVVHFNFGITGAMTSTLVAFWMPNIVQLLYVTSGGCKDTWRGFTMLAF 254

Query:   166 SGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLII 206
               +W   KLS ++G M+CLE  Y  IL+++T  LKNA + I
Sbjct:   255 KDLWPVFKLSLSSGGMVCLELWYNSILVLLTGNLKNAEVAI 295

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 52/161 (32%), Positives = 81/161 (50%)

Query:    54 LYVLAAAILKYLSQRDEVAELSGYAGPALI-LAFSFPLQNSC---MQSQLKSRVIAW--- 106
             +Y+ A  IL  L Q + +  ++      +I +  SF    +C   +Q+Q K+++IA+   
Sbjct:   135 IYIFAGPILLALGQEERLVRVARIIALWVIGINISFVPSFTCQMFLQAQSKNKIIAYVAA 194

Query:   107 -SFLVAVLSRCVLVYVPDFGVFGXXXXFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAF 165
              S  V V    +LV   DFG+ G      ++ W+       +   GGC  T  GFS  AF
Sbjct:   195 VSLGVHVFLSWLLVVHFDFGIAGAMTSSLVAHWLPNIAQVLFVTCGGCTETWRGFSWLAF 254

Query:   166 SGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLII 206
               +W   KLS ++G M+CLE  Y  ILI++T  LKNA + +
Sbjct:   255 KDLWPVFKLSVSSGGMICLELWYNSILILLTGNLKNAEVAL 295

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
 Identities = 62/176 (35%), Positives = 90/176 (51%)

Query:    54 LYVLAAAILKYLSQRDEVAELSG---YAGPALILAFS--FPLQNSCMQSQ---LKSRVIA 105
             +YV +  IL +L +   +A  +    Y     I A++  FP+Q   +QSQ     S  I+
Sbjct:   151 IYVFSEPILLFLGESPAIASAASLFVYGLIPQIFAYAANFPIQKF-LQSQSIVAPSAYIS 209

Query:   106 WSFL-VAVLSRCVLVYVPDFGVFGXXXXFDISGWVSVFGMFGYSVFGG-CPLTRNGFSMR 163
              + L V +L   + VY    G+ G      +S W+ V   F Y V    C  T  GFS++
Sbjct:   210 TATLFVHLLLSWLAVYKLGMGLLGASLVLSLSWWIIVVAQFVYIVTSERCRETWRGFSVQ 269

Query:   164 AFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICG---CFVMSLGW 216
             AFSG+W F KLSAA+ VMLCLE  Y +IL+++   L+N  L +     C  +S GW
Sbjct:   270 AFSGLWSFFKLSAASAVMLCLETWYFQILVLLAGLLENPELALDSLSICMTIS-GW 324

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2175916 AT5G17700 "AT5G17700" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 59/173 (34%), Positives = 85/173 (49%)

Query:    56 VLAAAILKYLSQR----DEVAELSGYAGPALI-LAFSFPLQNSCMQSQLKSRVIA-WSFL 109
             VLA  IL+ L Q     + V E+  +  P L  + F+  +Q   +Q+Q+K+ +I   S L
Sbjct:   135 VLAGPILRLLGQNVVISETVDEIYPWVIPYLYSIVFTMTMQ-MYLQAQMKNAIIGILSTL 193

Query:   110 VAVLSRCVL---VYVPDFGVFGXXXXFDISGWVSVFGMFGYSVFGG-CPLTRNGFSMRAF 165
               VL        V V   G+ G     +IS W      F Y VFGG CP T  GFS  AF
Sbjct:   194 ALVLDIAATWWCVSVMGMGIHGALLGLNISSWSVAIAEFVY-VFGGWCPHTWTGFSTAAF 252

Query:   166 SGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLIICGCFVMSLGWQW 218
               +   +KLS ++G MLCLE  Y  I+++M+ Y K+A + I    +    + W
Sbjct:   253 LDLIPMLKLSISSGFMLCLEYWYMSIIVLMSGYAKDANIAISAFSICQYIYSW 305

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 66/203 (32%), Positives = 97/203 (47%)

Query:    31 GPAPFSLLAAYCPN---ILLQAFDC--HLYVLAAAILKYLSQRDEVAELSGYAGPALI-- 83
             G     +L  Y      ILL    C   LY+ A  +L  L Q  E+AE+SG     +I  
Sbjct:   159 GAGQMDMLGVYMQRSWLILLGTSVCLLPLYIYATPLLILLGQEPEIAEISGKFTTQIIPQ 218

Query:    84 ---LAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVY----VPDFGVFGXXXXFDIS 136
                LA +FP Q   +QSQ K  ++AW    A+     ++Y    V  +G+ G    FD+S
Sbjct:   219 MFALAINFPTQKF-LQSQSKVGIMAWIGFFALTLHIFILYLFINVFKWGLNGAAAAFDVS 277

Query:   137 GWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT 196
              W        Y V G C     G S  AF  +W F+KLS A+ VMLCLE  Y   +I++T
Sbjct:   278 AWGIAIAQVVY-VVGWCKDGWKGLSWLAFQDVWPFLKLSFASAVMLCLEIWYFMTIIVLT 336

Query:   197 EYLKNATLIICGCFV-MSL-GWQ 217
              +L++  + +    + M++ GW+
Sbjct:   337 GHLEDPVIAVGSLSICMNINGWE 359

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 52/163 (31%), Positives = 86/163 (52%)

Query:    54 LYVLAAAILKYLSQRDEVAELSG---YAGPALILAFS--FPLQNSCMQSQL----KSRVI 104
             L++ +  IL  L + ++VA L+    Y    +I A++  FP+Q   +QSQ      + + 
Sbjct:   146 LFLFSNPILTALGEPEQVATLASVFVYGMIPVIFAYAVNFPIQKF-LQSQSIVTPSAYIS 204

Query:   105 AWSFLVAVLSRCVLVYVPDFGVFGXXXXFDISGWVSVFGMFGY-SVFGGCPLTRNGFSMR 163
             A + ++ ++   + VY   +G+         S W+ V     Y  +   C  T  GFS +
Sbjct:   205 AATLVIHLILSWIAVYRLGYGLLALSLIHSFSWWIIVVAQIVYIKMSPRCRRTWEGFSWK 264

Query:   164 AFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLII 206
             AF G+WDF +LSAA+ VMLCLE+ Y +IL+++   LKN  L +
Sbjct:   265 AFEGLWDFFRLSAASAVMLCLESWYSQILVLLAGLLKNPELAL 307

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II0465 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	2e-21
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	2e-04
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	7e-04
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	0.001
cd13124	434	cd13124, MATE_SpoVB_like, Stage V sporulation prot	0.001

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score = 91.5 bits (228), Expect = 2e-21
 Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 54  LYVLAAAILKYLSQRDEVAELSG----YAGPALILAFSFPLQNSCMQSQLKSRVIAWSFL 109
           L++    IL  L Q  E+A L+G    +  P L     F      +Q+Q     + +  L
Sbjct: 100 LWLNTEPILLLLGQDPEIARLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISL 159

Query: 110 VAVLSRC----VLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF-GGCPLTRNGFSMRA 164
           VA+L       +LV+V   G  GAA A  IS W+ V  +  Y  F  G   T  GFS  A
Sbjct: 160 VALLLNILLNYLLVFVLGLGFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREA 219

Query: 165 FSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLK 200
           F G   F+KL+  + +MLCLE     IL+++   L 
Sbjct: 220 FRGWGPFLKLAIPSALMLCLEWWAFEILVLLAGLLP 255

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 61  ILKYLSQRDEVAELSG-------YAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVL 113
           +L  +    EVAEL+           PA +L F        ++ Q  ++   +  L+  +
Sbjct: 97  LLSLMGADGEVAELAQDYLRILILGIPAYLLNFVL---RGFLRGQGDTKTPMYITLIGNV 153

Query: 114 SRCVLVYVPDFGVF------GAAAAFDISGWVSVFGMFGYSVFGG-CPLTRNGFSMRAFS 166
              +L Y+  FG F      GAA A  IS W+    +  Y        L   G     + 
Sbjct: 154 INIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWE 213

Query: 167 GIWDFVKLSAAAGVMLCLE 185
            +   +KL       + LE
Sbjct: 214 VLKRLLKLGLPIAFRVILE 232

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 54  LYVLAAAILKYLSQRDEVAELSG----YAGPALILAFSFPLQNSCMQSQLKSRVIAWSFL 109
           L  LA  IL  + Q  EVA ++          +  A  F +  S + +  ++R      L
Sbjct: 99  LLWLAPPILPLMGQEPEVAAIARGYLLALAWGIPPALLFQVLRSFLDALGRTRPAMVITL 158

Query: 110 VAVLSRCVLVYV--------PDFGVFGAAAAFDISGWVSVFGMFGY 147
           +A++    L YV        P  G  GA  A  I  W+    +  Y
Sbjct: 159 LALVLNIPLNYVLIFGKFGLPALGGAGAGLATAIVYWLMFLALAFY 204

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 54  LYVLAAAILKYLSQRDEVAELSG-------YAGPALILAFSFPLQNSCMQSQLKSRVIAW 106
           L   A  +L+ L    EV EL+           P  +L+F     +  ++    ++   +
Sbjct: 114 LLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVL---SGILRGLGDTKTPMY 170

Query: 107 SFLVAVLSRCVLVYV------PDFGVFGAAAAFDISGWVSVFGMFGYSVFG--GCPLTRN 158
             L+  L   VL Y+         GV GAA A  I+ W+    +  Y +       L + 
Sbjct: 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK 230

Query: 159 GFSMRAFSGIWDFVKLSAAAGVMLCLE 185
                    + + ++L     +    E
Sbjct: 231 KLLKPDRKLLKEILRLGLPIFLESLSE 257

Length = 455

>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 54  LYVLAAAILKYLSQRDEVAELSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVL 113
           L VLA  I   L    E   +     P+++      +  + +Q   K ++   + L+ +L
Sbjct: 332 LAVLAEPINTLLFGDSEGGLILQILAPSILFLSLQQVTAAILQGLGKVKIPVINLLIGLL 391

Query: 114 SRCVLVY--VPDFGVFGAAAAFDISGWVSVFGMF 145
            + VL Y  +P FG++GAA A  I   V+     
Sbjct: 392 VKIVLNYVLIPIFGIYGAAIATVIGFLVAALLNL 425

The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.97
PRK10189	478	MATE family multidrug exporter; Provisional	99.96
PRK00187	464	multidrug efflux protein NorA; Provisional	99.96
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.95
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.95
PRK01766	456	multidrug efflux protein; Reviewed	99.94
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.82
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.56
PRK15099	416	O-antigen translocase; Provisional	99.49
PRK01766	456	multidrug efflux protein; Reviewed	99.39
PRK00187	464	multidrug efflux protein NorA; Provisional	99.36
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.27
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.06
PRK10189	478	MATE family multidrug exporter; Provisional	99.03
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.02
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.96
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	98.96
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.68
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.58
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	98.49
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.32
PRK10459	492	colanic acid exporter; Provisional	98.31
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	98.28
PRK15099	416	O-antigen translocase; Provisional	98.08
COG2244	480	RfbX Membrane protein involved in the export of O-	98.05
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.96
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	97.81
COG0728	518	MviN Uncharacterized membrane protein, putative vi	97.43
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.32
PRK10459	492	colanic acid exporter; Provisional	97.14
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	96.44
COG2244	480	RfbX Membrane protein involved in the export of O-	95.85
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	95.76
KOG1347	473	consensus Uncharacterized membrane protein, predic	83.73

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=8.2e-34  Score=261.11  Aligned_cols=210  Identities=17%  Similarity=0.136  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      ..++.|+++++|+|++++++++.+++++|++|+||                                             
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            55799999999999999999999999999999999                                             


Q ss_pred             ----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHH
Q 047457           54 ----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAW  106 (235)
Q Consensus        54 ----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~  106 (235)
                                            .+.+.++++.++|.++|+.+.+.+|    ..+. +..++.++++ ++|++||+|.+|+
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~-~lr~~G~~~~~m~  170 (455)
T COG0534          92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSG-ILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCchhHH
Confidence                                  5678999999999999999999999    4555 8889999999 9999999999999


Q ss_pred             HHHHHHHh----HhHHhhc-cC-CCcchHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCchHhhhcHHHHHHHHhHH
Q 047457          107 SFLVAVLS----RCVLVYV-PD-FGVFGAAAAFDISGWVSVFGMFGYSVFGGC--PLTRNGFSMRAFSGIWDFVKLSAAA  178 (235)
Q Consensus       107 ~~~i~~~~----~~~lI~~-~~-lGv~GaAiAt~is~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~lg~P~  178 (235)
                      ++++++++    ||+|||+ ++ ||+.|||+||++++++.+++.+.|+.+++.  ........+..++.+|+++|+|.|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            99999887    9999998 68 999999999999999999999888887642  2221222233458899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          179 GVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       179 ~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      ++++..|...+.+.+.+++++|++++|| +++ .++.++.++++.|+++|.+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~-~~i~~~~~~~~~gi~~a~~~  302 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTVALAAYGIA-LRIASFIFMPPFGIAQAVTI  302 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 999 99999999999999999876

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=238.73  Aligned_cols=210  Identities=13%  Similarity=-0.002  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      .|++.|+++++++|++++++++.+++++|++|+||                                             
T Consensus         4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            46889999999999999999999999999999999                                             


Q ss_pred             -----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHH
Q 047457           54 -----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIA  105 (235)
Q Consensus        54 -----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~  105 (235)
                                             .+.+.++++.++|+|||+.+.+.+|    .++. +..+..+++. ++|++||++.++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~-~lr~~G~~~~~~  162 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLG-WLLGVQYARAPV  162 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcccchHHH
Confidence                                   2346688889999999999999999    4445 7778888888 999999999999


Q ss_pred             HHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc-cCCC-CCCCCchHhhhcHHHHHHHHhHHH
Q 047457          106 WSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG-GCPL-TRNGFSMRAFSGIWDFVKLSAAAG  179 (235)
Q Consensus       106 ~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~lg~P~~  179 (235)
                      +++++++++    ||+|+++++||+.|+|+||.+++++.+++...++.++ +.+. +.+.++.+..+.+|+++|+|.|.+
T Consensus       163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~  242 (441)
T PRK10367        163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM  242 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence            999988776    9999999999999999999999999988877776653 2111 111111111246899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          180 VMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       180 ~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      ++...+..++.+.+.+++++|++++|| +|+ .++.++.++++.|+++|++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~-~~i~~~~~~~~~gl~~a~~~  293 (441)
T PRK10367        243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVL-MTLLTFTAYALDGFAYAVEA  293 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999999999 999 99999999999999999876

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.96  E-value=4.7e-28  Score=224.23  Aligned_cols=220  Identities=14%  Similarity=0.089  Sum_probs=183.2

Q ss_pred             hhhhhHhh-HHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 047457            9 TEVTNQIR-DKIWIE--SKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------   53 (235)
Q Consensus         9 ~~~~~~~~-~~~~~~--~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------   53 (235)
                      .|.|.-|+ |+.|+.  .|+++++++|++++++++.+++++|+.|+||                                
T Consensus        11 ~~~~~~~~~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~   90 (478)
T PRK10189         11 VHGTRWYAKRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTV   90 (478)
T ss_pred             HhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555 556766  9999999999999999999999999999999                                


Q ss_pred             -----------------------------------HHHhhHHHHHHc--CCChHHHHHHHhH----hHHH-HHHHHHHHH
Q 047457           54 -----------------------------------LYVLAAAILKYL--SQRDEVAELSGYA----GPAL-ILAFSFPLQ   91 (235)
Q Consensus        54 -----------------------------------~~~~~~~il~~~--g~~~~l~~~a~~Y----i~~~-~~~~~~~l~   91 (235)
                                                         .+.+.++++.++  +.|+|+.+++.+|    .++. +..+...++
T Consensus        91 lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~  170 (478)
T PRK10189         91 VVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGS  170 (478)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                               456778999999  4799999999999    4455 777788888


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHh----HhHHhhcc----CCCcchHHHHHHHHHHHHHHHHHHHHHhc-c--CCCCCCC-
Q 047457           92 NSCMQSQLKSRVIAWSFLVAVLS----RCVLVYVP----DFGVFGAAAAFDISGWVSVFGMFGYSVFG-G--CPLTRNG-  159 (235)
Q Consensus        92 ~~~l~~~g~~~~~~~~~~i~~~~----~~~lI~~~----~lGv~GaAiAt~is~~~~~~~~~~~~~~~-~--~~~~~~~-  159 (235)
                      + ++|++||++.+++++++++++    ||+|+++.    +||+.|+|+||.+++++..++...++.++ +  .+.+++. 
T Consensus       171 ~-~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (478)
T PRK10189        171 G-ALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSY  249 (478)
T ss_pred             H-HHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccc
Confidence            8 999999999999999887664    99999863    79999999999999999887766555433 1  1212211 


Q ss_pred             CchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          160 FSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       160 ~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      +.+..++.+|+++|+|+|.+++...+...+.+.+.+++.+|++++|| +|+ .|+.++.++++.|+++|++|
T Consensus       250 ~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~-~~i~~~~~~~~~gi~~A~~~  320 (478)
T PRK10189        250 FKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIA-FSIAALINLPGNALGSASTI  320 (478)
T ss_pred             cccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            11224578999999999999999888888888888899999999999 999 99999999999999999875

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.96  E-value=4.1e-28  Score=223.80  Aligned_cols=209  Identities=13%  Similarity=0.035  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 047457           20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH----------------------------------------------   53 (235)
Q Consensus        20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~----------------------------------------------   53 (235)
                      +++.|+++++++|++++++++.+++++|++++||                                              
T Consensus         6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~   85 (464)
T PRK00187          6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGA   85 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence            4678999999999999999999999999999999                                              


Q ss_pred             --------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHH
Q 047457           54 --------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSF  108 (235)
Q Consensus        54 --------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~  108 (235)
                                          ...+.++++.++++|||+.+.+.+|    .++. +..+...+++ ++|++|+++++++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~-~l~~~g~~~~~~~~~  164 (464)
T PRK00187         86 TRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRG-FTSALGRAGPVMVIS  164 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHH
Confidence                                3446789999999999999999999    4455 7788888888 999999999999998


Q ss_pred             HHHHHh----HhHHhhcc----CCCcchHHHHHHHHHHHHHHHHHHHHHhcc-CC-CC-CCCCchHhhhcHHHHHHHHhH
Q 047457          109 LVAVLS----RCVLVYVP----DFGVFGAAAAFDISGWVSVFGMFGYSVFGG-CP-LT-RNGFSMRAFSGIWDFVKLSAA  177 (235)
Q Consensus       109 ~i~~~~----~~~lI~~~----~lGv~GaAiAt~is~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~l~lg~P  177 (235)
                      .+++++    ||+|||+.    +||+.|+|+||++++++..+....|+++++ .+ .+ ++.+.+..++.+|+++|+|+|
T Consensus       165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P  244 (464)
T PRK00187        165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP  244 (464)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence            887776    99999873    599999999999999988877666766542 21 11 212222345778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          178 AGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       178 ~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      .++++..|...+.+.+.+++++|++++|+ +++ .|+..+.++++.|++.|.+|
T Consensus       245 ~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~-~~i~~l~~~~~~gi~~a~~~  297 (464)
T PRK00187        245 IGGTYAVEVGLFTFAALCMGALGSTQLAAHQIA-LQIVSVAFMVPVGLSYAVTM  297 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 999 99999999999999998765

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=212.86  Aligned_cols=210  Identities=30%  Similarity=0.402  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 047457           17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH-------------------------------------------   53 (235)
Q Consensus        17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~-------------------------------------------   53 (235)
                      +..+.|.|+++++|.|+++..+.+...+++|++|+||                                           
T Consensus        21 ~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~  100 (473)
T KOG1347|consen   21 SQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK  100 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc
Confidence            3358999999999999999999999999999999999                                           


Q ss_pred             ------------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHH
Q 047457           54 ------------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVI  104 (235)
Q Consensus        54 ------------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~  104 (235)
                                              .|.+.++++..+|+|||+.+.+..|    +|.+ .+.....+++ |+|+|++..+.
T Consensus       101 ~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~-~lq~Q~~~~~~  179 (473)
T KOG1347|consen  101 FTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAK-FLQAQSITLPL  179 (473)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHH-HHHhccCchHH
Confidence                                    6788899999999999999999999    8888 9999999999 99999999999


Q ss_pred             HHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHhhhcHHHHHHHHhHHHH
Q 047457          105 AWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGV  180 (235)
Q Consensus       105 ~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~  180 (235)
                      .+++..+.++    ||+|++.+++|+.|++++..++.|+.......|+....+..+|.+++++ +++|++++|+++|+++
T Consensus       180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~  258 (473)
T KOG1347|consen  180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAV  258 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence            9999988887    9999999999999999999999999999999998876777889998887 9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCc--chhhh-HHhHHhHhHHHHHhhhhhhcCCC
Q 047457          181 MLCLENRYCRILIMMTEYLKN--ATLII-CGCFVMSLGWQWAPPAAGLSLPN  229 (235)
Q Consensus       181 ~~~~e~~~~~i~~~l~~~~G~--~~vAa-~I~~~~i~~l~~~~~~g~~~a~~  229 (235)
                      +.|+|+|.+++..++.|.+++  .++++ +|+ .++.+..++.+.|++.|++
T Consensus       259 miclE~w~~eil~l~~G~l~np~~~~~~~sI~-~~~~~~~~~~~~~~~~a~s  309 (473)
T KOG1347|consen  259 MICLEWWAYEILVLLAGLLGNAKVSLASQSIC-LEIGGWHLMIPGAFSAAVS  309 (473)
T ss_pred             eeHHHHHHHHHHHHHHhccCCcHHHHHHHHHH-HHHHHHHHHHhhhhhhhHH
Confidence            999999999999999999996  56677 999 9999999999999998854

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.95  E-value=5.1e-26  Score=209.19  Aligned_cols=208  Identities=13%  Similarity=0.027  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q 047457           21 IESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH-----------------------------------------------   53 (235)
Q Consensus        21 ~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~-----------------------------------------------   53 (235)
                      +..|+++++++|++++++.+.+++++|+.|+||                                               
T Consensus         9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~   88 (453)
T PRK09575          9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKA   88 (453)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHH
Confidence            567899999999999999999999999999999                                               


Q ss_pred             ---------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHH
Q 047457           54 ---------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWS  107 (235)
Q Consensus        54 ---------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~  107 (235)
                                           .+.+.++++.+++.|+|+.+.+.+|    .++. +..++..+.. ++|+.|+++.+++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~-~l~~~g~~~~~~~~  167 (453)
T PRK09575         89 KRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPF-LLRNDESPNLATGL  167 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCChHHHHHH
Confidence                                 4567899999999999999999999    4455 6677888888 99999999999999


Q ss_pred             HHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CchHhhhcHHHHHHHHhHHHHHH
Q 047457          108 FLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNG-FSMRAFSGIWDFVKLSAAAGVML  182 (235)
Q Consensus       108 ~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~lg~P~~~~~  182 (235)
                      +++++++    ||+|+++++||+.|+|+||.+++++.+++..+|+.+++.+.+++. ..+..++.+|+++++|+|.+++.
T Consensus       168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~  247 (453)
T PRK09575        168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY  247 (453)
T ss_pred             HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence            9888765    999999999999999999999999998887777765532222211 11223467899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCc-chhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          183 CLENRYCRILIMMTEYLKN-ATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       183 ~~e~~~~~i~~~l~~~~G~-~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      ..+...+.+.+.+.+++|+ +++|+ ++. .++..+.+++..|+++|.+|
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~lAa~~i~-~~i~~~~~~~~~gi~~a~~~  296 (453)
T PRK09575        248 LYGSFVVALHNRLFMEYGSALTVGAYAIV-GYLMVLYYLVAEGIAEGMQP  296 (453)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence            9888888888888888886 57999 999 99999999999999999876

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.94  E-value=4e-25  Score=202.90  Aligned_cols=212  Identities=16%  Similarity=0.164  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 047457           17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH-------------------------------------------   53 (235)
Q Consensus        17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~-------------------------------------------   53 (235)
                      |+.+++.|+++++++|..++++.+.+++.+|+.++||                                           
T Consensus         5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~   84 (456)
T PRK01766          5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR   84 (456)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            4456889999999999999999999999999999998                                           


Q ss_pred             ------------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHH
Q 047457           54 ------------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVI  104 (235)
Q Consensus        54 ------------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~  104 (235)
                                              .+.+.++++.+++.|+|+.+.+.+|    .++. +..+...+++ ++|++|+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~-~l~~~g~~~~~  163 (456)
T PRK01766         85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRS-FIDGLGKTKPT  163 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCChHH
Confidence                                    3455688999999999999999999    3455 7788888888 99999999999


Q ss_pred             HHHHHHHHHh----HhHHhhc----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCCCCchHhhhcHHHHHH
Q 047457          105 AWSFLVAVLS----RCVLVYV----PDFGVFGAAAAFDISGWVSVFGMFGYSVFGG-CP--LTRNGFSMRAFSGIWDFVK  173 (235)
Q Consensus       105 ~~~~~i~~~~----~~~lI~~----~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~  173 (235)
                      ++.++++.++    ||+|+++    +++|+.|+|+||.+++++..++..+++++++ .+  +.+..+.+..++.+|++++
T Consensus       164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~  243 (456)
T PRK01766        164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK  243 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence            9999988776    8999985    3699999999999999999888777766542 11  1122222233567999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          174 LSAAAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       174 lg~P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      +|+|..++...|...+.+.+.+++++|++++|+ ++. .++..+.++++.|++.|.+|
T Consensus       244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~-~~i~~~~~~~~~gl~~a~~~  300 (456)
T PRK01766        244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIA-LNFSSLLFMLPLSLAMALTI  300 (456)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 999 99999999999999998875

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.82  E-value=2.1e-18  Score=151.93  Aligned_cols=176  Identities=18%  Similarity=0.188  Sum_probs=144.8

Q ss_pred             HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh----HhHHhh-ccC
Q 047457           54 LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS----RCVLVY-VPD  123 (235)
Q Consensus        54 ~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~----~~~lI~-~~~  123 (235)
                      .+++.+++..+++.|+|..+++.+|    .++. +..+...... ++|+.|+++.+++.+++.+++    ++++++ .++
T Consensus        90 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g  168 (342)
T TIGR00797        90 GYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRG-FLRGQGDTKTPMYITLIGNVINIILNYILIFGKFG  168 (342)
T ss_pred             HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCcc
Confidence            4567889999999899999999999    3444 6677777777 999999999999999887766    788887 578


Q ss_pred             -CCcchHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047457          124 -FGVFGAAAAFDISGWVSVFGMFGYSVFG-GCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKN  201 (235)
Q Consensus       124 -lGv~GaAiAt~is~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~  201 (235)
                       +|+.|+++++.+++++.+++...+.+++ +.+.+|+...+...+.+|++++.|+|..+....++..+.+.+.+.+.+|+
T Consensus       169 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~  248 (342)
T TIGR00797       169 FLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGS  248 (342)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCc
Confidence             9999999999999999888776665543 33333322222335788999999999999999999998888888999999


Q ss_pred             chhhh-HHhHHhHhHHHHHhhhhhhcCCCCC
Q 047457          202 ATLII-CGCFVMSLGWQWAPPAAGLSLPNPN  231 (235)
Q Consensus       202 ~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p~  231 (235)
                      +++++ +++ .++..+..+++.+++.+.+|.
T Consensus       249 ~~v~~~~~a-~~~~~~~~~~~~~~~~a~~~~  278 (342)
T TIGR00797       249 IALAAHQIA-LNVESLLFMPAFGFGIAVSIL  278 (342)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            99999 999 999999999999999988763

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.56  E-value=8.6e-13  Score=122.18  Aligned_cols=174  Identities=13%  Similarity=0.116  Sum_probs=133.5

Q ss_pred             HHHhhHHHHHHc--CCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhH--hHHhhccCC
Q 047457           54 LYVLAAAILKYL--SQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSR--CVLVYVPDF  124 (235)
Q Consensus        54 ~~~~~~~il~~~--g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~--~~lI~~~~l  124 (235)
                      .+.+++++..++  |.|+|..+++.+|    .++. +..+....+. ++|+.|+.+.+++.+++.++++  .++++..++
T Consensus       100 ~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~  178 (502)
T TIGR01695       100 GIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGG-ILNARKRFFIPSFSPILFNIGVILSLLFFDWNY  178 (502)
T ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCeeHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            345678888888  6788988999999    4555 6677778888 9999999999999999888773  234445689


Q ss_pred             CcchHH--HHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 047457          125 GVFGAA--AAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNA  202 (235)
Q Consensus       125 Gv~GaA--iAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~~  202 (235)
                      |+.|++  ++|.+++.+..++...+.++++.+. +..++ ...+.+|++++.|.|..++...+.....+...+.+.+|++
T Consensus       179 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~  256 (502)
T TIGR01695       179 GQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLL-KPRFN-FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG  256 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-cCcCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999  9999999998887666655432211 11111 1236789999999999999988888888777888888999


Q ss_pred             hhhh-HHhHHhHhHHHHH-hhhhhhcCCCCC
Q 047457          203 TLII-CGCFVMSLGWQWA-PPAAGLSLPNPN  231 (235)
Q Consensus       203 ~vAa-~I~~~~i~~l~~~-~~~g~~~a~~p~  231 (235)
                      ++++ +++ .++..+... +..+++++..|.
T Consensus       257 ~v~~~~~a-~~l~~~~~~~~~~~i~~~~~P~  286 (502)
T TIGR01695       257 SVSALYYA-NRIYQLPLGIFGISLSTVLLPK  286 (502)
T ss_pred             hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 998 888877654 466777776653

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=99.49  E-value=6e-12  Score=114.36  Aligned_cols=174  Identities=14%  Similarity=-0.039  Sum_probs=129.1

Q ss_pred             HHHhhHHHHHHcCCChHHHHHHHhH-hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhHhHH-hhccCC-CcchH
Q 047457           54 LYVLAAAILKYLSQRDEVAELSGYA-GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVL-VYVPDF-GVFGA  129 (235)
Q Consensus        54 ~~~~~~~il~~~g~~~~l~~~a~~Y-i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~~~l-I~~~~l-Gv~Ga  129 (235)
                      .+.+.+++...++.|+| ......| .+.. ...+.....+ .+|+.||++.++..+++++++|.++ ++.+++ |+.|+
T Consensus        98 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~lr~~~~~~~~~~~~~~~~~~~i~l~i~~~~~~Gv~Ga  175 (416)
T PRK15099         98 FLLAAAPISQGLFGHTD-YQGVVRAVALIQMGIAWANLLLA-ILKGFRDAAGNALSLIVGSLIGVAAYYLCYRLGGYEGA  175 (416)
T ss_pred             HHHHHHHHHHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            35677899998888887 4455555 4444 4455666777 9999999999999999888886432 333333 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccC-CCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCCcchhhh-
Q 047457          130 AAAFDISGWVSVFGMFGYSVFGGC-PLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT-EYLKNATLII-  206 (235)
Q Consensus       130 AiAt~is~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~-~~~G~~~vAa-  206 (235)
                      ++||+++|.+..+....++.+++. +.++..++ .+.+.+|++++.|.|..+++...+......+.+. ..+|+++++. 
T Consensus       176 ~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y  254 (416)
T PRK15099        176 LLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIW  254 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHH
Confidence            999999999887776666654421 11111111 2246789999999999999988777777777667 4999999999 


Q ss_pred             HHhHHhHhH-HHHHhhhhhhcCCCCC
Q 047457          207 CGCFVMSLG-WQWAPPAAGLSLPNPN  231 (235)
Q Consensus       207 ~I~~~~i~~-l~~~~~~g~~~a~~p~  231 (235)
                      +++ .++.. +...+..+++++..|-
T Consensus       255 ~~a-~~i~~~~~~~~~~~~~~a~~P~  279 (416)
T PRK15099        255 QGV-SSISDAYLQFITASFSVYLLPT  279 (416)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            999 99976 5689999999998884

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.39  E-value=8.8e-12  Score=114.59  Aligned_cols=131  Identities=14%  Similarity=0.093  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      .+++.|+++++++|..++++.+.....+|..++++                                             
T Consensus       234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~  313 (456)
T PRK01766        234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD  313 (456)
T ss_pred             CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            46789999999999999999999999999998888                                             


Q ss_pred             ----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHH
Q 047457           54 ----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAW  106 (235)
Q Consensus        54 ----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~  106 (235)
                                            .+.+.+++.++++.|||+.+.+..|    .++. +..+..++.+ ++|+.||++.+++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~g~g~~~~~~~  392 (456)
T PRK01766        314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSG-ALRGYKDTRVIFF  392 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhccCccHHHHH
Confidence                                  4567899999999999999999999    3333 6677888888 9999999999999


Q ss_pred             HHHHHHHh-----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457          107 SFLVAVLS-----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF  150 (235)
Q Consensus       107 ~~~i~~~~-----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~  150 (235)
                      .++++..+     .|++.+..++|+.|+++++.+++++..++..+++.+
T Consensus       393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~  441 (456)
T PRK01766        393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK  441 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            99987643     677777788999999999999999998876555443

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.36  E-value=2.4e-11  Score=112.38  Aligned_cols=127  Identities=9%  Similarity=0.032  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      .+++.|+++|+++|+.++++++.....+|+.++||                                             
T Consensus       231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~  310 (464)
T PRK00187        231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLE  310 (464)
T ss_pred             CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            45778999999999999999999999999999999                                             


Q ss_pred             ----------------------HHHhhHHHHHHcCC--Ch---HHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchh
Q 047457           54 ----------------------LYVLAAAILKYLSQ--RD---EVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKS  101 (235)
Q Consensus        54 ----------------------~~~~~~~il~~~g~--~~---~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~  101 (235)
                                            .+.+.+++++++..  |+   |+.+.+..|    .++. +..+..++.+ .+|+.||+
T Consensus       311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~-~lrg~G~~  389 (464)
T PRK00187        311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMG-AIRGLKDA  389 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-hHhccCcc
Confidence                                  46688999999842  44   788999999    3344 7777888888 99999999


Q ss_pred             HHHHHHHHHHHHh-----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHH
Q 047457          102 RVIAWSFLVAVLS-----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFG  146 (235)
Q Consensus       102 ~~~~~~~~i~~~~-----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~  146 (235)
                      +.+++++++...+     +|++++.+++|+.|+++++.+++++..++...
T Consensus       390 ~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~  439 (464)
T PRK00187        390 RTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTL  439 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHH
Confidence            9999999987732     88999988999999999999999887665543

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.27  E-value=8e-10  Score=101.91  Aligned_cols=202  Identities=10%  Similarity=0.051  Sum_probs=131.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------
Q 047457           27 WCIAGPAPFSLLAAYCPNILLQAFDCH-----------------------------------------------------   53 (235)
Q Consensus        27 l~lalP~~~~~l~~~~~~~vD~~~vG~-----------------------------------------------------   53 (235)
                      +|-+.|..++++.+.+.+.+|+.+++|                                                     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            355788899999999999999999988                                                     


Q ss_pred             ----------------HHHhhHHHHHHcCCChHHHHHHHhHhHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh--
Q 047457           54 ----------------LYVLAAAILKYLSQRDEVAELSGYAGPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS--  114 (235)
Q Consensus        54 ----------------~~~~~~~il~~~g~~~~l~~~a~~Yi~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~--  114 (235)
                                      .+.+.+.+...++.|++.....+.+.+.. +..+....+. ++|+.++.+..+..+.+..++  
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~i~~i~~~  160 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKG-YFQGISNMKPPAYIQVIEQIVRI  160 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccchHhHHHHHHHHHHHH
Confidence                            22344555565666666543322223444 5566777777 999999999999998887666  


Q ss_pred             --HhHHhh-----ccCCCcchHHHHHHHHHHHHHHHHHHHHHhc-cCC--CCCCCCchHhhhcHHHHHHHHhHHHHHHHH
Q 047457          115 --RCVLVY-----VPDFGVFGAAAAFDISGWVSVFGMFGYSVFG-GCP--LTRNGFSMRAFSGIWDFVKLSAAAGVMLCL  184 (235)
Q Consensus       115 --~~~lI~-----~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~  184 (235)
                        +..+++     +.++|+.|+++++.+++++..+....+.+++ +.+  ..+..+.+..++.+|++++.|+|..+++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~  240 (488)
T TIGR02900       161 SVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFI  240 (488)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence              333333     2357899999999999999988766555443 211  111111122346789999999999999888


Q ss_pred             HHHHHHHHHHHHhcC----Cc---chhhh-H----HhHHhHhHHHHHhhhhhhcCCCC
Q 047457          185 ENRYCRILIMMTEYL----KN---ATLII-C----GCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       185 e~~~~~i~~~l~~~~----G~---~~vAa-~----I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      +.....+-+.+.++.    |.   ++.+. +    ++ .++..+...+..+++++..|
T Consensus       241 ~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a-~~i~~~~~~~~~~l~~~~~p  297 (488)
T TIGR02900       241 GSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMA-MPLLTFPAVITSSLSTALVP  297 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChH-HHHHHhHHHHHHHHHHHHHH
Confidence            777666555554432    22   11222 2    22 34455555556777777665

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.06  E-value=4.2e-09  Score=97.11  Aligned_cols=130  Identities=12%  Similarity=0.043  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      .++..|+++++++|..++++.......+-..++++                                             
T Consensus       229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~  308 (453)
T PRK09575        229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYD  308 (453)
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChH
Confidence            35678999999999999998887766654433332                                             


Q ss_pred             -----------------------HHHhhHHHHHHcCC-ChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHH
Q 047457           54 -----------------------LYVLAAAILKYLSQ-RDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVI  104 (235)
Q Consensus        54 -----------------------~~~~~~~il~~~g~-~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~  104 (235)
                                             .+.+.++++.+++. |||+.+.+.+|    .++. +.....+.+. ++|+.|+++.+
T Consensus       309 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~-~~~~~g~~~~~  387 (453)
T PRK09575        309 NIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASA-YFMAVNQGGKA  387 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHH
Confidence                                   45688999999995 79999999999    3334 6677788888 99999999999


Q ss_pred             HHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457          105 AWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG  151 (235)
Q Consensus       105 ~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~  151 (235)
                      ++.++...++    .|++.  ..+|+.|+++|+.+++++..++...+++++
T Consensus       388 ~~~~~~~~~v~ip~~~ll~--~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~  436 (453)
T PRK09575        388 LFISIGNMLIQLPFLFILP--KWLGVDGVWLAMPLSNIALSLVVAPMLWRD  436 (453)
T ss_pred             HHHHHHhHHHHHHHHHHHH--HHHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9998876554    34443  237999999999999999887766665553

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.03  E-value=1.7e-08  Score=93.79  Aligned_cols=131  Identities=18%  Similarity=0.153  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      .++..|+++++++|..++++....-.++-+.++++                                             
T Consensus       254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~  333 (478)
T PRK10189        254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQ  333 (478)
T ss_pred             CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            45788999999999999999988877666665655                                             


Q ss_pred             ----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHH
Q 047457           54 ----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAW  106 (235)
Q Consensus        54 ----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~  106 (235)
                                            .+.+.+++..++..|+|+.+.+..+    .... +........+ .+||.||++.+++
T Consensus       334 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g-~lrg~G~t~~~~~  412 (478)
T PRK10189        334 AERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPA-GLKGARDARYAMW  412 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhcCCCchHHHH
Confidence                                  4568899999999999999999999    2223 5566666777 9999999999999


Q ss_pred             HHHHHHHh-----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457          107 SFLVAVLS-----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF  150 (235)
Q Consensus       107 ~~~i~~~~-----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~  150 (235)
                      ++++...+     -|++.+..++|+.|..++..+++.+..++..+.+++
T Consensus       413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~  461 (478)
T PRK10189        413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVS  461 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99877654     566666678999999999999998887765554443

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.02  E-value=1.8e-08  Score=92.85  Aligned_cols=126  Identities=20%  Similarity=0.225  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      .+++.|++++.++|..++++.....+.+|+.++|+                                             
T Consensus       220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~  299 (488)
T TIGR02900       220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDI  299 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999887753                                             


Q ss_pred             ---------------------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHH
Q 047457           54 ---------------------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCM   95 (235)
Q Consensus        54 ---------------------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l   95 (235)
                                                       ...++++++.++..+++    +.+|    .++. +........+ .+
T Consensus       300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~-~l  374 (488)
T TIGR02900       300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS-IL  374 (488)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence                                             34566777777765544    3344    3333 5566667777 99


Q ss_pred             hhcchhHHHHHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 047457           96 QSQLKSRVIAWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSV  149 (235)
Q Consensus        96 ~~~g~~~~~~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~  149 (235)
                      ++.||++.+++.++++.++    |++++..+.+|+.|+++||.+++.+..++..++.+
T Consensus       375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~  432 (488)
T TIGR02900       375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIK  432 (488)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888766    66666556789999999999999988777655544

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=98.96  E-value=4.7e-08  Score=90.58  Aligned_cols=154  Identities=17%  Similarity=0.167  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      .+++.|++++.++|..++++.......+|..+.++                                             
T Consensus       218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~  297 (502)
T TIGR01695       218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN  297 (502)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            34678999999999999999999999999987444                                             


Q ss_pred             -----------------------HHHhhHHHHHHcCC----ChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchh
Q 047457           54 -----------------------LYVLAAAILKYLSQ----RDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKS  101 (235)
Q Consensus        54 -----------------------~~~~~~~il~~~g~----~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~  101 (235)
                                             .+.+++++..++..    |+|..+.+..+    .++. +..+...+.+ .+++.||+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~a~g~~  376 (502)
T TIGR01695       298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLR-AFYARKDT  376 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhccCC
Confidence                                   45678888888754    56777778778    3344 6677777888 99999999


Q ss_pred             HHHHHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHhhhcHHHHHHHHhH
Q 047457          102 RVIAWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAA  177 (235)
Q Consensus       102 ~~~~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P  177 (235)
                      +.+++.+.++.++    |++++.  .+|+.|+++|+.+++.+..++..++.+++..     ...  ..+..+++.|..++
T Consensus       377 ~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~a  447 (502)
T TIGR01695       377 RTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLK-----GIL--PFGVLKVLAKLVIA  447 (502)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCC--chHHHHHHHHHHHH
Confidence            9999999887766    566653  4799999999999999888776655554311     111  12334456665566


Q ss_pred             HHHHH
Q 047457          178 AGVML  182 (235)
Q Consensus       178 ~~~~~  182 (235)
                      +.++.
T Consensus       448 s~~m~  452 (502)
T TIGR01695       448 SAIIG  452 (502)
T ss_pred             HHHHH
Confidence            66554

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=98.96  E-value=3.1e-08  Score=91.64  Aligned_cols=133  Identities=15%  Similarity=0.111  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 047457           17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH-------------------------------------------   53 (235)
Q Consensus        17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~-------------------------------------------   53 (235)
                      +..|+..|+++++.+|+.++++.......+-+.++++                                           
T Consensus       234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~  313 (455)
T COG0534         234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNY  313 (455)
T ss_pred             CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            3456899999999999999999999999999999988                                           


Q ss_pred             ------------------------HHHhhHHHHHHcCCChHHHHHHHhH--h--HHH-HHHHHHHHHHHHHhhcchhHHH
Q 047457           54 ------------------------LYVLAAAILKYLSQRDEVAELSGYA--G--PAL-ILAFSFPLQNSCMQSQLKSRVI  104 (235)
Q Consensus        54 ------------------------~~~~~~~il~~~g~~~~l~~~a~~Y--i--~~~-~~~~~~~l~~~~l~~~g~~~~~  104 (235)
                                              .+++.+++..++..|+|+.+.+.+|  +  ... +........+ .+||.||++.+
T Consensus       314 ~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g-~lrg~g~~~~~  392 (455)
T COG0534         314 KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSG-VLRGAGDAKIP  392 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcHHH
Confidence                                    6788999999999999999999999  2  222 5567777777 99999999999


Q ss_pred             HHHHHHHHHh-----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457          105 AWSFLVAVLS-----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG  151 (235)
Q Consensus       105 ~~~~~i~~~~-----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~  151 (235)
                      ++.+++....     -|++.+.+ +|..|..++..+++.+..++..++++++
T Consensus       393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~  443 (455)
T COG0534         393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG  443 (455)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999987776     45555544 9999999999999998888776665543

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.68  E-value=6.7e-06  Score=76.03  Aligned_cols=173  Identities=14%  Similarity=0.122  Sum_probs=128.3

Q ss_pred             HHHhhHHHHHHc--CCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh--HhHHhhccCC
Q 047457           54 LYVLAAAILKYL--SQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS--RCVLVYVPDF  124 (235)
Q Consensus        54 ~~~~~~~il~~~--g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~--~~~lI~~~~l  124 (235)
                      .+++++++..++  |.|+|..+.+.++    .|.. +..+...+.+ .++++++-..+....++.++.  -.++++....
T Consensus        74 ~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a-~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~  152 (451)
T PF03023_consen   74 GILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSA-ILNAHRRFLIPALSPLLFNLSIILSLLLLSNSW  152 (451)
T ss_pred             HHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467889998887  6788999999888    5666 7777777777 999999999999988888776  2234444456


Q ss_pred             C---cchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047457          125 G---VFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKN  201 (235)
Q Consensus       125 G---v~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~  201 (235)
                      |   +.+.|+|+.++..++.+..+.+.++...+.+ ..+++ ..++.|+++|...|..+..........+-..+++.+++
T Consensus       153 ~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~  230 (451)
T PF03023_consen  153 GQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFR-PKFDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE  230 (451)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-ccCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            7   8899999999999998887777665422211 11111 12568899999999999887777766777788888999


Q ss_pred             chhhh-HHhHHhHhHHHH-HhhhhhhcCCCC
Q 047457          202 ATLII-CGCFVMSLGWQW-APPAAGLSLPNP  230 (235)
Q Consensus       202 ~~vAa-~I~~~~i~~l~~-~~~~g~~~a~~p  230 (235)
                      .++++ .-+ .++..+.. .+..++++..-|
T Consensus       231 G~vs~l~YA-~~l~~lp~~i~~~~i~tv~~P  260 (451)
T PF03023_consen  231 GSVSALNYA-QRLYQLPLGIFAVSISTVVFP  260 (451)
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            99999 888 78777655 334455554433

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.58  E-value=8e-06  Score=75.51  Aligned_cols=130  Identities=22%  Similarity=0.202  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q 047457           21 IESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH-----------------------------------------------   53 (235)
Q Consensus        21 ~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~-----------------------------------------------   53 (235)
                      ++.|++++...|.+++........++|..+.++                                               
T Consensus       195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~  274 (451)
T PF03023_consen  195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF  274 (451)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            568899999999999999999999999999987                                               


Q ss_pred             ---------------------HHHhhHHHHHHc---C-CChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHH
Q 047457           54 ---------------------LYVLAAAILKYL---S-QRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRV  103 (235)
Q Consensus        54 ---------------------~~~~~~~il~~~---g-~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~  103 (235)
                                           .+.+++++.+.+   | -|+|-.+....+    .+++ ++.+...+.+ .+-++||++.
T Consensus       275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r-~fya~~~~~~  353 (451)
T PF03023_consen  275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSR-VFYALGDTKT  353 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHccCcHh
Confidence                                 566778887665   2 144444444444    6667 8889999999 9999999999


Q ss_pred             HHHHHHHHHHhHhHHhh--ccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457          104 IAWSFLVAVLSRCVLVY--VPDFGVFGAAAAFDISGWVSVFGMFGYSVFG  151 (235)
Q Consensus       104 ~~~~~~i~~~~~~~lI~--~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~  151 (235)
                      +++.+.++.++|.++-.  ...+|+.|.|+||.++.+++++....++.|+
T Consensus       354 ~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  354 PVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRR  403 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888544332  3468999999999999999988877666554

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=98.49  E-value=8.4e-06  Score=75.11  Aligned_cols=127  Identities=7%  Similarity=-0.019  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 047457           20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH----------------------------------------------   53 (235)
Q Consensus        20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~----------------------------------------------   53 (235)
                      ++..|+++|+.+|..+++........+-+.++++                                              
T Consensus       228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a  307 (441)
T PRK10367        228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQL  307 (441)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence            3568999999999999999999888888888888                                              


Q ss_pred             ---------------------HHHhhHHHHHHcCCChHHHHHHHhH--hHHH--HH-----HHHHHHHHHHHhhcchhHH
Q 047457           54 ---------------------LYVLAAAILKYLSQRDEVAELSGYA--GPAL--IL-----AFSFPLQNSCMQSQLKSRV  103 (235)
Q Consensus        54 ---------------------~~~~~~~il~~~g~~~~l~~~a~~Y--i~~~--~~-----~~~~~l~~~~l~~~g~~~~  103 (235)
                                           .+.+.+++..++..|+|+.+.+.+|  +...  +.     .....+.+ .+||. |++.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g-~lrg~-dt~~  385 (441)
T PRK10367        308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIG-ATRAA-EMRN  385 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ccchH-HHHH
Confidence                                 4568889999999999999999999  2211  11     11223333 67776 7999


Q ss_pred             HHHHHHHHHHhHhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457          104 IAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF  150 (235)
Q Consensus       104 ~~~~~~i~~~~~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~  150 (235)
                      +++++.+...+-++.  .+++|+.|..+|..+++.+..+++...+++
T Consensus       386 ~~~~~~~~~~~~~~~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~  430 (441)
T PRK10367        386 SMAVAAAGFALTLLT--LPWLGNHGLWLALTVFLALRGLSLAAIWRR  430 (441)
T ss_pred             HHHHHHHHHHHHHHH--HHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998875541111  235899999999999999888776655444

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.32  E-value=8.1e-05  Score=69.65  Aligned_cols=128  Identities=17%  Similarity=0.200  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q 047457           21 IESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH-----------------------------------------------   53 (235)
Q Consensus        21 ~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~-----------------------------------------------   53 (235)
                      ++.|++++...|++++..+.....++|+.+-+.                                               
T Consensus       229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~  308 (518)
T COG0728         229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF  308 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence            688999999999999999999999999998887                                               


Q ss_pred             ---------------------HHHhhHHHHHHc---CC-Ch-HHHHHHH---hHhHHH-HHHHHHHHHHHHHhhcchhHH
Q 047457           54 ---------------------LYVLAAAILKYL---SQ-RD-EVAELSG---YAGPAL-ILAFSFPLQNSCMQSQLKSRV  103 (235)
Q Consensus        54 ---------------------~~~~~~~il~~~---g~-~~-~l~~~a~---~Yi~~~-~~~~~~~l~~~~l~~~g~~~~  103 (235)
                                           ...+++++...+   |+ ++ |+...++   -|..++ ++++...+.. .+-+.+|+|+
T Consensus       309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~-~FYAr~d~kt  387 (518)
T COG0728         309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSR-VFYAREDTKT  387 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHccCCCc
Confidence                                 567788888665   32 22 2222222   225666 8888888999 9999999999


Q ss_pred             HHHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457          104 IAWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG  151 (235)
Q Consensus       104 ~~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~  151 (235)
                      |+.+++++.++    |+.++  +-+|..|.|+||.++.|+++.++.+..+++
T Consensus       388 P~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~  437 (518)
T COG0728         388 PMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKR  437 (518)
T ss_pred             ChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888    53333  457888899999999999988866555543

>PRK10459 colanic acid exporter; Provisional

Probab=98.31  E-value=4.1e-05  Score=71.00  Aligned_cols=128  Identities=7%  Similarity=-0.045  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 047457           20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH----------------------------------------------   53 (235)
Q Consensus        20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~----------------------------------------------   53 (235)
                      +++.|+++++++|...+++....++-+|..++|+                                              
T Consensus       203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~  282 (492)
T PRK10459        203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKL  282 (492)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHH
Confidence            4678999999999999999999999999999999                                              


Q ss_pred             ---------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHH
Q 047457           54 ---------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWS  107 (235)
Q Consensus        54 ---------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~  107 (235)
                                           ..+.+++++.++-.++  -+.+...    .+.. +......... .+++.|+++.+++.
T Consensus       283 ~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~-~l~a~g~~~~~~~~  359 (492)
T PRK10459        283 RVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGS-LLLAKGRADLSFKW  359 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCccchhHHH
Confidence                                 2344566554442221  1222222    2222 4455566667 89999999999988


Q ss_pred             HHHHHHhHhH--HhhccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457          108 FLVAVLSRCV--LVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF  150 (235)
Q Consensus       108 ~~i~~~~~~~--lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~  150 (235)
                      +++.+++...  ++....+|+.|+|+|+.+++.+.+....++..+
T Consensus       360 ~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~  404 (492)
T PRK10459        360 NVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLMIK  404 (492)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877776222  222345799999999999998877766555534

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=98.28  E-value=3.9e-07  Score=71.55  Aligned_cols=85  Identities=15%  Similarity=0.224  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----------------------------------------------------------
Q 047457           32 PAPFSLLAAYCPNILLQAFDCH----------------------------------------------------------   53 (235)
Q Consensus        32 P~~~~~l~~~~~~~vD~~~vG~----------------------------------------------------------   53 (235)
                      |+.++++++.+.+.+|+.++||                                                          
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~   80 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL   80 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence            8999999999999999999999                                                          


Q ss_pred             ---------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-HhHhH
Q 047457           54 ---------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAV-LSRCV  117 (235)
Q Consensus        54 ---------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~-~~~~~  117 (235)
                               .+.+.++++.+++.|+|+.+.+.+|    .++. +......+++ ++|+.|+++.+++.+.+.. +++..
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~~~~~~~~~~i~  158 (162)
T PF01554_consen   81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSG-ILQGIGRTKIAMYISIISFWIINIP  158 (162)
T ss_dssp             HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCC-CCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHH-HHHHCCcHHHHHHHHHHHHHHHHHh
Confidence                     4677889999999999999999999    4455 7788888888 9999999999999999988 44433

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK15099 O-antigen translocase; Provisional

Probab=98.08  E-value=0.00026  Score=64.30  Aligned_cols=128  Identities=10%  Similarity=-0.006  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      .++..|+++++++|..++++.....+.+|..++|+                                             
T Consensus       210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~~~~~~  289 (416)
T PRK15099        210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDI  289 (416)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence            35678999999999999999999999999999985                                             


Q ss_pred             ---------------------HHHhhHHHHHHcCCCh--HHHHHHHhHhHHH-HHHHHHHHHHHHHhhcchhHHHHHHHH
Q 047457           54 ---------------------LYVLAAAILKYLSQRD--EVAELSGYAGPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFL  109 (235)
Q Consensus        54 ---------------------~~~~~~~il~~~g~~~--~l~~~a~~Yi~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~  109 (235)
                                           .+++++++..++..|+  +..+..+...++. .......+.. ..-+.++.+......+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~~~~~l~~~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~  368 (416)
T PRK15099        290 TREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRDLFAWQLVGDVLKVGAYVFGY-LVIAKASLRFYILAEV  368 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence                                 2367788877776554  2333322222222 2222222223 3345556665555555


Q ss_pred             HHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 047457          110 VAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSV  149 (235)
Q Consensus       110 i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~  149 (235)
                      ...++    +++++.  .+|..|+++|+.+++.+..+.......
T Consensus       369 ~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~  410 (416)
T PRK15099        369 SQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL  410 (416)
T ss_pred             HHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444    556554  479999999999999998876554333

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.05  E-value=0.0006  Score=62.91  Aligned_cols=129  Identities=21%  Similarity=0.164  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------   53 (235)
                      ..+..|++++.++|..++.+...+.+-+|+.++|+                                             
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~  287 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK  287 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            46899999999999999999999999999999998                                             


Q ss_pred             -----------------------HHHhhHHHHHHc-CCChHHHHHHHhH-hHHH-HHHHHHHHHHHHHhhcchhHHHHHH
Q 047457           54 -----------------------LYVLAAAILKYL-SQRDEVAELSGYA-GPAL-ILAFSFPLQNSCMQSQLKSRVIAWS  107 (235)
Q Consensus        54 -----------------------~~~~~~~il~~~-g~~~~l~~~a~~Y-i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~  107 (235)
                                             ..+++++++..+ |.+.+-.....+. .++. +......... .+++.|+.+..++.
T Consensus       288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~  366 (480)
T COG2244         288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSS-LLQALGKQRLLLLI  366 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHH-HHHHcCcchhhHHH
Confidence                                   445666666654 5443323333333 4444 6666666777 99999999999999


Q ss_pred             HHHHHHhHhHHhh--ccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457          108 FLVAVLSRCVLVY--VPDFGVFGAAAAFDISGWVSVFGMFGYSVF  150 (235)
Q Consensus       108 ~~i~~~~~~~lI~--~~~lGv~GaAiAt~is~~~~~~~~~~~~~~  150 (235)
                      +.++.++|.++.+  .+..|..|+++++ .+ .........+..+
T Consensus       367 ~~~~~i~~~~l~~~li~~~g~~g~~~a~-~~-~~~~~~~~~~~~~  409 (480)
T COG2244         367 SLISALLNLILNLLLIPRFGLIGAAIAT-AS-VIALALLLFYILR  409 (480)
T ss_pred             HHHHHHHHHHHHhHHHHhhhhhhHHHHH-HH-HHHHHHHHHHHHH
Confidence            9988777443333  2457889999999 44 4444443334333

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.96  E-value=0.0034  Score=52.63  Aligned_cols=140  Identities=14%  Similarity=0.029  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHhHh----HHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 047457           85 AFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRC----VLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGF  160 (235)
Q Consensus        85 ~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~~----~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~  160 (235)
                      ........ ++++.++.+.....+.+..+...    ++++ .+.++.+..++..++..+..++...+.+++. +.++   
T Consensus       123 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---  196 (273)
T PF01943_consen  123 SLSSVFSG-LLQGLQRFKYIAISNIISSLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRF---  196 (273)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc---
Confidence            44455556 88888888877777776666522    2222 3445888999999998888777666655432 1111   


Q ss_pred             chHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-cCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCCC
Q 047457          161 SMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTE-YLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNPN  231 (235)
Q Consensus       161 ~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~-~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p~  231 (235)
                      .....+..|+++|.+.|..+..........+-..+.+ ..|+++++. +++ .++......++..+.+..-|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a-~~l~~~~~~~~~~~~~~~~P~  268 (273)
T PF01943_consen  197 SFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVA-YRLASAISFLLSSISTVLFPR  268 (273)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            1122578889999999999988877766666555555 457888888 999 999999999988888766653

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=97.81  E-value=0.0017  Score=49.97  Aligned_cols=66  Identities=29%  Similarity=0.369  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457           83 ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG  151 (235)
Q Consensus        83 ~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~  151 (235)
                      +..+.....+ .+++.||++..+..+.++.++    |++++  +.+|..|+|+||.+++.+......++.+|+
T Consensus        11 ~~~l~~~~~~-il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~   80 (146)
T PF14667_consen   11 FMGLSQPLGS-ILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRKK   80 (146)
T ss_pred             HHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777 999999999999999988888    55554  468999999999999999877766665553

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=97.43  E-value=0.07  Score=50.28  Aligned_cols=157  Identities=14%  Similarity=0.049  Sum_probs=103.1

Q ss_pred             HHhhHHHHHHc-CC--ChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh----HhHHhhcc
Q 047457           55 YVLAAAILKYL-SQ--RDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS----RCVLVYVP  122 (235)
Q Consensus        55 ~~~~~~il~~~-g~--~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~----~~~lI~~~  122 (235)
                      .++++.+.+.+ +.  |++....+...    .|.+ +..+...... .+++.++-..+.+.-..-|+.    ...+-.+.
T Consensus       109 ~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~a-iLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~  187 (518)
T COG0728         109 ILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGA-ILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYF  187 (518)
T ss_pred             HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCeechhhhhHHHHHHHHHHHHHHhccch
Confidence            35666777343 33  23333334433    5666 6666666666 999999998888877766655    12121122


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 047457          123 DFGVFGAAAAFDISGWVSVFGMFGYSVFGGC--PLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLK  200 (235)
Q Consensus       123 ~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G  200 (235)
                      +.-..+.+|++.++-+++.++.+...++...  +.+|.. +   ..+.|++++.-.|..+..........+-+.+++.+.
T Consensus       188 ~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~-~---~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~  263 (518)
T COG0728         188 DPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF-K---DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLA  263 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC-C---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            2236688999999999999988777766522  222211 1   257888999999999888777777778888999988


Q ss_pred             cchhhh-HHhHHhHhHHH
Q 047457          201 NATLII-CGCFVMSLGWQ  217 (235)
Q Consensus       201 ~~~vAa-~I~~~~i~~l~  217 (235)
                      +.+++. .-+ ..+..+-
T Consensus       264 ~Gsis~l~YA-~rl~qlP  280 (518)
T COG0728         264 EGSVSWLYYA-DRLYQLP  280 (518)
T ss_pred             cccHHHHHHH-HHHHHhh
Confidence            877777 666 5555443

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.32  E-value=0.029  Score=46.55  Aligned_cols=139  Identities=19%  Similarity=0.094  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhH---hHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047457           83 ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSR---CVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNG  159 (235)
Q Consensus        83 ~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~---~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~  159 (235)
                      ........+. .+++.++.+...........+.   .++....+.++.+..++..+++.+..+.... ..+++.+.. + 
T Consensus       103 ~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-  178 (251)
T PF13440_consen  103 FSALSQLFRS-ILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSILLAFIISALLALLISFY-LLRRKLRLS-F-  178 (251)
T ss_pred             HHHHHHHHHH-HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhccccCCC-c-
Confidence            4466667777 9999999998888877666652   2222223447888888888888776555332 222221111 1 


Q ss_pred             CchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCcchhhh-HHhHHhHhHHHH-HhhhhhhcCCCCC
Q 047457          160 FSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEY-LKNATLII-CGCFVMSLGWQW-APPAAGLSLPNPN  231 (235)
Q Consensus       160 ~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~-~G~~~vAa-~I~~~~i~~l~~-~~~~g~~~a~~p~  231 (235)
                       +   .+..| .+|.+.|..+.....+....+-..+++. +|.++++. +++ .++..... .+..++++..-|.
T Consensus       179 -~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a-~~l~~~~~~~~~~~i~~~~~p~  247 (251)
T PF13440_consen  179 -K---FSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVA-QRLASLPASLLSSAISSVFFPK  247 (251)
T ss_pred             -h---hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence             1   12223 6888999999888777777777777777 88888888 888 88888777 7888877665553

>PRK10459 colanic acid exporter; Provisional

Probab=97.14  E-value=0.088  Score=48.78  Aligned_cols=125  Identities=11%  Similarity=-0.035  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHhH----hHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047457           84 LAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSR----CVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNG  159 (235)
Q Consensus        84 ~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~----~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~  159 (235)
                      ..+....+. .++...+.+.......+..+..    ..+. ..+.|+.+..+++.+++.+..+... +..+++.+.+   
T Consensus       125 ~~~~~~~~~-~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~~---  198 (492)
T PRK10459        125 IPIGQQFRA-LLQKELEFNKLAKIEISAVVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFG-YFGRKIYRPA---  198 (492)
T ss_pred             HHHhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHH-HHhcccCCcc---
Confidence            344445566 7888888877766666665552    2222 2578899999999998877665432 2222222111   


Q ss_pred             CchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCCcchhhh-HHhHHhHhHH
Q 047457          160 FSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT-EYLKNATLII-CGCFVMSLGW  216 (235)
Q Consensus       160 ~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~-~~~G~~~vAa-~I~~~~i~~l  216 (235)
                      ++ ...+.+|++++.+.|.............+-..+. ..+|+++++. +.+ .++..+
T Consensus       199 ~~-~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A-~~l~~~  255 (492)
T PRK10459        199 LH-FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLA-YNVATV  255 (492)
T ss_pred             ce-ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHH-HHHHHH
Confidence            11 1235678999999999988776655555555554 4457888888 878 777655

>TIGR00797 matE putative efflux protein, MATE family

Probab=96.44  E-value=0.015  Score=50.94  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047457           19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH   53 (235)
Q Consensus        19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~   53 (235)
                      .+++.|+++++++|..+.+++......+|..++++
T Consensus       211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~  245 (342)
T TIGR00797       211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVAR  245 (342)
T ss_pred             CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999998888

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=95.85  E-value=1.5  Score=40.40  Aligned_cols=142  Identities=14%  Similarity=0.025  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHH-HHhHhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchH
Q 047457           85 AFSFPLQNSCMQSQLKSRVIAWSFLVA-VLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMR  163 (235)
Q Consensus        85 ~~~~~l~~~~l~~~g~~~~~~~~~~i~-~~~~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (235)
                      ......+. ++|+.++.+...+..... ..+.-.+.... ....++.++..++..........+..+++....+..++ .
T Consensus       131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  207 (480)
T COG2244         131 PLSSVLRG-LFQGFGRFGPLALSIVSSIFLLAAVFALLF-AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR-F  207 (480)
T ss_pred             HHHHHHHH-HHHHHhhcccchhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC-c
Confidence            34444555 777777776666552222 11111111111 23455566666666665555444443221111111111 1


Q ss_pred             hhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          164 AFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT-EYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       164 ~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~-~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      ..+.+++.++.|+|.............+=+.+. ..+|++.++. +.. .++......+...++.+.-|
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a-~~i~~~~~~~~~~l~~~l~P  275 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAA-QRLVSLLLIVASALNRVLFP  275 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccc-cHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999998877666655544444 4557777777 755 66667777666666655444

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=95.76  E-value=0.0057  Score=47.63  Aligned_cols=53  Identities=9%  Similarity=-0.132  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          177 AAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       177 P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      |..+++..+...+.+.+.+++++|++++++ ++. .++..+.+++..|++.|.+|
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~-~~~~~~~~~~~~g~~~a~~~   54 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIA-SSIFSILFMLIFGLATALQI   54 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHhhhcccccccccc
Confidence            888999999999999999999999999999 999 99999999999999987654

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=83.73  E-value=3  Score=39.01  Aligned_cols=66  Identities=8%  Similarity=-0.159  Sum_probs=54.8

Q ss_pred             hhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHh-HHHHHhhhhhhcCCCCC
Q 047457          165 FSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSL-GWQWAPPAAGLSLPNPN  231 (235)
Q Consensus       165 ~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~-~l~~~~~~g~~~a~~p~  231 (235)
                      .+..|++.+++.|..+....+.....+-+...+++|+..+|+ ++. .+.. ...+.+..|++.+..|.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla-~s~~n~~~~s~~~gl~~aletl   91 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLA-NSFANITGVSILLGLQLALDTL   91 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHH-HHhhcccchHHhhccchhhhcc
Confidence            467899999999999998888888888889999999999999 888 5444 45778888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	3e-07

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 19/147 (12%), Positives = 40/147 (27%), Gaps = 15/147 (10%)

Query: 54  LYVLAAAILKYLSQRDEVAELSG----YAGPALILAFSFPLQNSCMQSQLKSRVIAWSFL 109
           +      I++++   + +A  +         A+     F    S       ++       
Sbjct: 108 VLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF 167

Query: 110 VAVLSRCVLVYV--------PDFGVFGAAAAFDISGWVSVFGMFGYSVFGG---CPLTRN 158
           + +L    L ++        P+ G  G   A  I  W+ +  +  Y V            
Sbjct: 168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227

Query: 159 GFSMRAFSGIWDFVKLSAAAGVMLCLE 185
            F       +    +L       L  E
Sbjct: 228 TFHKPQPKELIRLFRLGFPVAAALFFE 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.89
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.1

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.89  E-value=8.1e-23  Score=184.41  Aligned_cols=212  Identities=11%  Similarity=0.083  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 047457           17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH-------------------------------------------   53 (235)
Q Consensus        17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~-------------------------------------------   53 (235)
                      +..+++.|+++++++|.+++++++.+++.+|+.++||                                           
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~   84 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQ   84 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSST
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            3456899999999999999999999999999999999                                           


Q ss_pred             -----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHH
Q 047457           54 -----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIA  105 (235)
Q Consensus        54 -----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~  105 (235)
                                             .+.+.++++.+++.|+|+.+.+.+|    .++. +..+...++. ++|++|+++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~  163 (460)
T 3mkt_A           85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRS-FTDGMSLTKPAM  163 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTT-TTCTTSCCTTTH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHH
Confidence                                   3456678888899999999999999    5566 7778888888 999999999999


Q ss_pred             HHHHHHHHh----HhHHhhc-c---CCCcchHHHHHHHHHHHHHHHHHHHHHhcc-CCC--CCCCCchHhhhcHHHHHHH
Q 047457          106 WSFLVAVLS----RCVLVYV-P---DFGVFGAAAAFDISGWVSVFGMFGYSVFGG-CPL--TRNGFSMRAFSGIWDFVKL  174 (235)
Q Consensus       106 ~~~~i~~~~----~~~lI~~-~---~lGv~GaAiAt~is~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~l  174 (235)
                      +.++++.++    |++|+++ +   ++|+.|+++||.+++++..++...++++++ .++  .++.+.+...+.+|+++|+
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            999888776    8889876 4   799999999999999999888777776652 211  1222223345788999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457          175 SAAAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP  230 (235)
Q Consensus       175 g~P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p  230 (235)
                      |+|..++...+...+.+.+.+++++|++++++ +++ .++..+.++++.|++++.+|
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~-~~i~~~~~~~~~~~~~a~~p  299 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVA-LNFSSLVFMFPMSIGAAVSI  299 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 999 99999999999999999877

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.10  E-value=1.8e-10  Score=103.42  Aligned_cols=126  Identities=10%  Similarity=0.018  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 047457           20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH----------------------------------------------   53 (235)
Q Consensus        20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~----------------------------------------------   53 (235)
                      ++..|+++++++|..+++++......+|..++|+                                              
T Consensus       234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~  313 (460)
T 3mkt_A          234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGA  313 (460)
T ss_dssp             TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            4677899999999999999999999999999888                                              


Q ss_pred             ---------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHH
Q 047457           54 ---------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWS  107 (235)
Q Consensus        54 ---------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~  107 (235)
                                           .+++.+++..++..|+|+.+.+.++    .++. +..+.....+ .+++.||++.+++.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~  392 (460)
T 3mkt_A          314 AIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAG-SLRGYKDMTAIFHR  392 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchHHHHHH
Confidence                                 5678899999999999998888888    2333 5566777777 99999999999999


Q ss_pred             HHHHH-Hh----HhHHhhc----cC-CCcchHHHHHHHHHHHHHHHHHH
Q 047457          108 FLVAV-LS----RCVLVYV----PD-FGVFGAAAAFDISGWVSVFGMFG  146 (235)
Q Consensus       108 ~~i~~-~~----~~~lI~~----~~-lGv~GaAiAt~is~~~~~~~~~~  146 (235)
                      ++++. ++    ++++++.    ++ +|+.|+++|+.+++.+..++..+
T Consensus       393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~  441 (460)
T 3mkt_A          393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ  441 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHH
Confidence            98877 43    7888876    67 99999999999999887666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00