Citrus Sinensis ID: 047475

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
LMATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccEHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccEEcccccccEcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
LMATWMLEVSSKSAEAQLGVDLARIYrdsalyddnqqNLFNIHGSLSAAVIFSGLINCtlvlpyvqTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHcfgfdhdhLAITAIVLAIYPIAFASLFASFIgrlnfqrr
Flexible Loop (DISEMBL)
LMATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR
Low Complexity Region (SEG)
LMATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSllyynylgmllmllTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR
Disordered region (IsUnstruct)
****************QLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNF***
Disordered Region (DISOPRED)
LMATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR
Disordered Region (DISEMBL)
LMATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR
Disordered Region (DISPRO)
LMATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LMATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q5W274	1447	Pleiotropic drug resistan	N/A	no	0.896	0.144	0.481	6e-56
Q9LFH0	1450	ABC transporter G family	yes	no	0.858	0.137	0.482	6e-55
Q9ZUT8	1413	ABC transporter G family	no	no	0.858	0.141	0.465	2e-54
Q7PC81	1390	ABC transporter G family	no	no	0.858	0.143	0.430	1e-49
Q7PC82	1392	ABC transporter G family	no	no	0.858	0.143	0.413	1e-47
Q7PC83	1397	ABC transporter G family	no	no	0.858	0.143	0.430	3e-46
Q8GZ52	1400	ABC transporter G family	no	no	0.858	0.142	0.408	9e-43
A2WSH0	1457	Pleiotropic drug resistan	N/A	no	0.854	0.136	0.389	1e-37
Q0JLC5	1457	Pleiotropic drug resistan	yes	no	0.854	0.136	0.389	1e-37
Q8GU89	1450	Pleiotropic drug resistan	no	no	0.854	0.137	0.392	6e-33

>sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1

 Score =  217 bits (552), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 153/239 (64%), Gaps = 30/239 (12%)

Query: 25   IYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPL 84
            ++ D     DNQQ++F++ G++  AVIF G+ N + VLPYV TE +V+Y ERFAGMY+  
Sbjct: 1209 LFWDKGKKLDNQQSVFSVFGAMFTAVIFCGINNSSSVLPYVTTERSVLYRERFAGMYASW 1268

Query: 85   AYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLM 144
            AYAL Q+  E+PY+  Q   F ++TYPM+ YY S YK+F YFY M C+LLY+ YLGM+L+
Sbjct: 1269 AYALAQVAIEIPYLLAQALAFTVITYPMIGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLV 1328

Query: 145  LLTPNYMVAAILSSAYHTMLNLFSGFFI--------------LEPT-------------- 176
             +TP++ VAAIL S+++TM NLF+GF +              L PT              
Sbjct: 1329 SMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGD 1388

Query: 177  --RKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
              +++  F E KTVAAFL   FGF H+ L I A VL  YP+ FASLFA FIG+LNFQRR
Sbjct: 1389 IEKEITVFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447

May be a general defense protein.
Nicotiana tabacum (taxid: 4097)

>sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1

 Score =  213 bits (543), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 144/230 (62%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            D QQ++F + G++   V+F G+ NC   L Y +TE  V+Y ERFAGMYS  AYALGQ++ 
Sbjct: 1221 DTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVT 1280

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PYIF Q   F++VTYPM+ +Y S YK+F   Y M CSLL +NYL M L+ +TPN+MVA
Sbjct: 1281 EIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVA 1340

Query: 154  AILSSAYHTMLNLFSGFFI--------------LEPT----------------RKLRYFG 183
            AIL S ++   NLFSGF I              L PT                 ++  FG
Sbjct: 1341 AILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFG 1400

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            ++ TVA FLK  FGF HD LA+TA+V   +PIA AS+FA F+G+LNFQRR
Sbjct: 1401 QSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/230 (46%), Positives = 144/230 (62%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            D QQNLF + G++   V+F G+ NCT  L Y +TE  V+Y ERFAGMYS  AYAL Q++ 
Sbjct: 1184 DTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVT 1243

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PYIF Q+  F++V YPM+ +Y S  K+F   Y M C+LL +NYL M L+ +TPN+MVA
Sbjct: 1244 EIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVA 1303

Query: 154  AILSSAYHTMLNLFSGFFILEPT------------------------------RKLRYFG 183
            AIL S + T  N+F+GF I +P                               +K+  FG
Sbjct: 1304 AILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFG 1363

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            ETKTVA+FL+  FGF HD L ITAI+L  +PIA A+++A F+ +LNFQ+R
Sbjct: 1364 ETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/230 (43%), Positives = 148/230 (64%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            +NQQ+LFN+ GS+   V+FSG+ NC+ V+  V TE  V Y ERF+ MY+P AY+L Q++ 
Sbjct: 1161 NNQQDLFNVFGSMFTVVLFSGINNCSTVIFCVATERNVFYRERFSRMYNPWAYSLAQVLV 1220

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PY  FQ+ I++++ YPMV Y+ SVYK+F  FY + CSLL +NY GMLL+++TPN  +A
Sbjct: 1221 EIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNVHIA 1280

Query: 154  AILSSAYHTMLNLFSGFFILEPT------------------------------RKLRYFG 183
              L S+++ ++NLF+G+ + +P                               +++  FG
Sbjct: 1281 FTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFG 1340

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            E K V+AFL+  FG+ +D LA+ A+VL  +PI  ASLFA FIG+LNFQ++
Sbjct: 1341 EKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1390

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 146/230 (63%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            +NQQ+LFN+ GS+   V+FSG+ NC+ VL  V TE  V Y ERF+ MY+  AY+L Q++ 
Sbjct: 1163 NNQQDLFNVFGSMFTVVLFSGINNCSTVLFSVATERNVFYRERFSRMYNSWAYSLAQVLV 1222

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PY  FQ+ +++++ YPMV Y+ SV+K+F  FY + C+LL +NY GMLL+++TPN  +A
Sbjct: 1223 EIPYSLFQSIVYVIIVYPMVGYHWSVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNVHIA 1282

Query: 154  AILSSAYHTMLNLFSGFFILEPT------------------------------RKLRYFG 183
              L S+++ ++NLF+G+ + +P                               +++  FG
Sbjct: 1283 FTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFG 1342

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            E K V+ FL+  FG+ +D LA+ A+VL  +PI  ASLFA FIG+LNFQ++
Sbjct: 1343 EKKKVSDFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1392

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1

 Score =  184 bits (468), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 99/230 (43%), Positives = 140/230 (60%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            +NQQ+LF+I GS+   VIFSG+ NC  V+ ++ TE  V Y ERFA MYS  AY+  Q++ 
Sbjct: 1168 NNQQDLFSIFGSMYTIVIFSGINNCATVMNFIATERNVFYRERFARMYSSWAYSFSQVLV 1227

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            EVPY   Q+ +  ++ YPM+ Y+ SVYK+F   Y + CSLL +NY GML++ LTPN  +A
Sbjct: 1228 EVPYSLLQSLLCTIIVYPMIGYHMSVYKMFWSLYSIFCSLLIFNYCGMLMVALTPNIHMA 1287

Query: 154  AILSSAYHTMLNLFSGFFI--------------LEPT----------------RKLRYFG 183
              L S + +M+NLF+GF +              L PT                +++  FG
Sbjct: 1288 LTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITVFG 1347

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            E K+V+AFL+  FG+ HD LA+ A VL  +PI  ASLFA F+ +LNFQ++
Sbjct: 1348 EKKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFMSKLNFQKK 1397

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2

 Score =  173 bits (438), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 136/230 (59%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            +NQQ+L +I GS+   V+F G+ NC  V+ ++  E  V Y ERFA MYS  AY+  Q++ 
Sbjct: 1171 NNQQDLISIFGSMYTLVVFPGMNNCAAVINFIAAERNVFYRERFARMYSSWAYSFSQVLI 1230

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            EVPY   Q+ +  ++ YP + Y+ SVYK+F   Y + CSLL +NY GML++ LTPN  +A
Sbjct: 1231 EVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMA 1290

Query: 154  AILSSAYHTMLNLFSGFFI--------------LEPT----------------RKLRYFG 183
              L S++ +MLNLF+GF I              L PT                +++  FG
Sbjct: 1291 VTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFG 1350

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            E K V+AFL+  FG+ H+ LA+ A VL  YPI  A+LFA F+ +L+FQ++
Sbjct: 1351 EKKRVSAFLEDYFGYKHESLAVVAFVLIAYPIIVATLFAFFMSKLSFQKK 1400

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 127/226 (56%), Gaps = 27/226 (11%)

Query: 35   NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAE 94
              Q+LFN  GS+ AAV+F G++NCT V P V  E TV Y ER AGMYS   YA GQ++ E
Sbjct: 1232 KSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIE 1291

Query: 95   VPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAA 154
            +PY   Q  ++ ++ Y M+ +  +  K F Y + M+ +LLY+ + GM+ + LTPNY +A+
Sbjct: 1292 IPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIAS 1351

Query: 155  ILSSAYHTMLNLFSGFFILEPTRKLRY--------------------FGETKT------- 187
            I+SSA++ + NLFSGF I  P   + +                    FG+ +T       
Sbjct: 1352 IVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTP 1411

Query: 188  VAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            V  F+++ FGF H  L   A V+A +   FASLF   I + NFQ+R
Sbjct: 1412 VKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457

May be a general defense protein.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 127/226 (56%), Gaps = 27/226 (11%)

Query: 35   NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAE 94
              Q+LFN  GS+ AAV+F G++NCT V P V  E TV Y ER AGMYS   YA GQ++ E
Sbjct: 1232 KSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIE 1291

Query: 95   VPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAA 154
            +PY   Q  ++ ++ Y M+ +  +  K F Y + M+ +LLY+ + GM+ + LTPNY +A+
Sbjct: 1292 IPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIAS 1351

Query: 155  ILSSAYHTMLNLFSGFFILEPTRKLRY--------------------FGETKT------- 187
            I+SSA++ + NLFSGF I  P   + +                    FG+ +T       
Sbjct: 1352 IVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTP 1411

Query: 188  VAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            V  F+++ FGF H  L   A V+A +   FASLF   I + NFQ+R
Sbjct: 1412 VKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1

 Score =  140 bits (354), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 128/227 (56%), Gaps = 28/227 (12%)

Query: 35   NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAE 94
             QQ+LFN  GS+ AAV++ G+ N   V P V  E TV Y ER AGMYS   YA GQ+  E
Sbjct: 1224 KQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIE 1283

Query: 95   VPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAA 154
            +PYI  QT I+ ++ Y M+ +  +V K   Y + M  +LLY+ + GM+ + LTPN  +AA
Sbjct: 1284 LPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAA 1343

Query: 155  ILSSAYHTMLNLFSGFFILEPTRKL--RYF--------------------------GETK 186
            I+SSA++ + NLFSG+ I  P   +  R++                          G+T+
Sbjct: 1344 IISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLEGDTR 1403

Query: 187  TVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            TVA F+   FGF H+ L + A+V  ++ + FA LF+  I + NFQRR
Sbjct: 1404 TVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
413916095	1377	hypothetical protein ZEAMMB73_465499 [Ze	0.991	0.167	0.469	1e-60
147780242	1417	hypothetical protein VITISV_037751 [Viti	0.858	0.141	0.517	1e-59
296089838	1406	unnamed protein product [Vitis vinifera]	0.858	0.142	0.513	4e-59
225450466	1448	PREDICTED: pleiotropic drug resistance p	0.858	0.138	0.513	4e-59
297804740	1149	predicted protein [Arabidopsis lyrata su	0.991	0.201	0.448	6e-56
449445399	1440	PREDICTED: pleiotropic drug resistance p	0.858	0.138	0.473	3e-55
449521369	638	PREDICTED: pleiotropic drug resistance p	0.858	0.313	0.473	4e-55
297816648	1450	ATPDR9/PDR9 [Arabidopsis lyrata subsp. l	0.858	0.137	0.482	6e-55
359477643	1492	PREDICTED: pleiotropic drug resistance p	0.858	0.134	0.486	7e-55
297736800	1486	unnamed protein product [Vitis vinifera]	0.858	0.134	0.486	9e-55

>gi|413916095|gb|AFW56027.1| hypothetical protein ZEAMMB73_465499 [Zea mays]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/262 (46%), Positives = 165/262 (62%), Gaps = 31/262 (11%)

Query: 3    ATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVL 62
            +TWMLEV+S S EAQLG+D A++Y DS++Y   QQ+LFNI G +    IFSG+ NC  V+
Sbjct: 1116 STWMLEVTSTSLEAQLGLDFAQVYMDSSMYKHEQQSLFNILGCMYGTTIFSGINNCQSVM 1175

Query: 63   PYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKI 122
            P+V  E +VVY ERFAGMYSP AY+L Q+  E+PY+  Q  +F+++ YPM+ Y     K 
Sbjct: 1176 PFVSIERSVVYRERFAGMYSPWAYSLAQVTMEIPYVLVQIVLFMLIAYPMIGYAWEAAKF 1235

Query: 123  FCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEP------- 175
            F   Y M C+LLY+ YLGML++ +TPN  VA+IL+S ++T+ NL SGF +  P       
Sbjct: 1236 FWLLYTMFCTLLYFLYLGMLMVSVTPNIQVASILTSLFYTIQNLMSGFIVPGPQIPKWWL 1295

Query: 176  ------------------------TRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLA 211
                                     +K+  FGETK+VAAFLK  FGF  + L ++AIVLA
Sbjct: 1296 WLYYTSPMSWTLNVFFTTQFGYEDQKKIDVFGETKSVAAFLKDYFGFKRELLPLSAIVLA 1355

Query: 212  IYPIAFASLFASFIGRLNFQRR 233
             +PI FA+LF   I +LNFQRR
Sbjct: 1356 AFPIFFAALFGYSISKLNFQRR 1377

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780242|emb|CAN65735.1| hypothetical protein VITISV_037751 [Vitis vinifera]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/230 (51%), Positives = 156/230 (67%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            +NQQ +FN+ GS+  AVIF G+ NC+ VLP+V  E TV+Y E+FAGMYS  AY+L Q+  
Sbjct: 1188 NNQQGVFNVLGSMYVAVIFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQVTI 1247

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PY+F QT I++++TYPM+ YY SVYKIF YFY M C+LLYYNYLGMLL+ +TP++ VA
Sbjct: 1248 EIPYLFIQTLIYVIITYPMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFPVA 1307

Query: 154  AILSSAYHTMLNLFSGFFILEPT------------------------------RKLRYFG 183
            +ILSSA++T+ NLF+GF I +P                               + +  FG
Sbjct: 1308 SILSSAFYTIFNLFAGFLIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILVFG 1367

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            ETKTVAAFLK  +GF HD LA+ A++L  +P+AFA LF   I RLNFQRR
Sbjct: 1368 ETKTVAAFLKDYYGFHHDRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089838|emb|CBI39657.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 155/230 (67%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            +NQQ +FN+ GS+  AVIF G+ NC+ VLP+V  E TV+Y E+FAGMYS  AY+L Q+  
Sbjct: 1177 NNQQGVFNVLGSMYVAVIFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQVTI 1236

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PY+F QT I++++TYPM+ YY SVYKIF YFY M C+LLYYNYLGMLL+ +TP++ VA
Sbjct: 1237 EIPYLFIQTLIYVIITYPMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFPVA 1296

Query: 154  AILSSAYHTMLNLFSGFFILEPT------------------------------RKLRYFG 183
            +ILSSA++T+ NLF+GF I +P                               + +  FG
Sbjct: 1297 SILSSAFYTIFNLFAGFLIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILVFG 1356

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            ETKTVA FLK  +GF HD LA+ A++L  +P+AFA LF   I RLNFQRR
Sbjct: 1357 ETKTVATFLKDYYGFHHDRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450466|ref|XP_002280231.1| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 155/230 (67%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            +NQQ +FN+ GS+  AVIF G+ NC+ VLP+V  E TV+Y E+FAGMYS  AY+L Q+  
Sbjct: 1219 NNQQGVFNVLGSMYVAVIFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQVTI 1278

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PY+F QT I++++TYPM+ YY SVYKIF YFY M C+LLYYNYLGMLL+ +TP++ VA
Sbjct: 1279 EIPYLFIQTLIYVIITYPMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFPVA 1338

Query: 154  AILSSAYHTMLNLFSGFFILEPT------------------------------RKLRYFG 183
            +ILSSA++T+ NLF+GF I +P                               + +  FG
Sbjct: 1339 SILSSAFYTIFNLFAGFLIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILVFG 1398

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            ETKTVA FLK  +GF HD LA+ A++L  +P+AFA LF   I RLNFQRR
Sbjct: 1399 ETKTVATFLKDYYGFHHDRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804740|ref|XP_002870254.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316090|gb|EFH46513.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 117/261 (44%), Positives = 162/261 (62%), Gaps = 30/261 (11%)

Query: 3    ATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVL 62
            ATWMLE++ KSA+ +LG+D A++Y+DS LY +NQQ+L +I GS+   VIF G+ NC  V+
Sbjct: 889  ATWMLEITCKSAQDKLGIDFAQLYKDSTLYKNNQQDLISIFGSMYTLVIFPGMNNCGAVI 948

Query: 63   PYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKI 122
             +V  E  V Y ERFA MYS  AY+  Q++ EVPY   Q+ +  ++ YPM+ Y+ SVYK+
Sbjct: 949  NFVAAERNVFYRERFARMYSSWAYSFSQVLVEVPYSLLQSVLCTIIVYPMIGYHMSVYKM 1008

Query: 123  FCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFI---------- 172
            F   Y + CSLL +NY GML++ LTPN  +A  L S++ +MLNLF+GF I          
Sbjct: 1009 FWSLYSIFCSLLIFNYCGMLMVALTPNVHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWI 1068

Query: 173  ----LEPT----------------RKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAI 212
                L PT                +++  FGE K V+AFL+  FG+ HD L I A VL  
Sbjct: 1069 WMYYLSPTSWVLEGLLSSQYGDVDKEITVFGEKKRVSAFLEDYFGYKHDSLVIVAFVLIA 1128

Query: 213  YPIAFASLFASFIGRLNFQRR 233
            YPI  A+LFA F+ +LNFQ++
Sbjct: 1129 YPIIVATLFAFFMTKLNFQKK 1149

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445399|ref|XP_004140460.1| PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus]

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 148/230 (64%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            +NQQ+LFN+ GS+  AVIF G+ NC+ VLP+V  E TV+Y ERF+GMYS  AY+L Q++ 
Sbjct: 1211 ENQQDLFNVFGSMFTAVIFMGINNCSSVLPHVSMERTVMYRERFSGMYSSWAYSLAQVMV 1270

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E PY+F Q  I+I +TYPM+ + GS  K+   FY M  +LLY+NYLGMLL+ +TPNY +A
Sbjct: 1271 EAPYLFIQVAIYIFITYPMIGFDGSASKVLLCFYAMFSTLLYFNYLGMLLVSITPNYQIA 1330

Query: 154  AILSSAYHTMLNLFSGFFILEP------------------------------TRKLRYFG 183
            +ILSSA++TM NLFSGF + +P                               + L+ F 
Sbjct: 1331 SILSSAFYTMFNLFSGFLVPKPQIPGWWIWLYYMTPTSWSLNCLLTSQYGDVDKPLKVFK 1390

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            ET T++AFL+H FGF H+ L +   +L ++PI  A LF  FIG+LNFQRR
Sbjct: 1391 ETTTISAFLRHYFGFHHNQLPLVGAILILFPILIAFLFGFFIGKLNFQRR 1440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521369|ref|XP_004167702.1| PREDICTED: pleiotropic drug resistance protein 3-like, partial [Cucumis sativus]

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 148/230 (64%), Gaps = 30/230 (13%)

Query: 34  DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
           +NQQ+LFN+ GS+  AVIF G+ NC+ VLP+V  E TV+Y ERF+GMYS  AY+L Q++ 
Sbjct: 409 ENQQDLFNVFGSMFTAVIFMGINNCSSVLPHVSMERTVMYRERFSGMYSSWAYSLAQVMV 468

Query: 94  EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
           E PY+F Q  I+I +TYPM+ + GS  K+   FY M  +LLY+NYLGMLL+ +TPNY +A
Sbjct: 469 EAPYLFIQVAIYIFITYPMIGFDGSASKVLLCFYAMFSTLLYFNYLGMLLVSITPNYQIA 528

Query: 154 AILSSAYHTMLNLFSGFFILEP------------------------------TRKLRYFG 183
           +ILSSA++TM NLFSGF + +P                               + L+ F 
Sbjct: 529 SILSSAFYTMFNLFSGFLVPKPQIPGWWIWLYYMTPTSWSLNCLLTSQYGDVDKPLKVFK 588

Query: 184 ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
           ET T++AFL+H FGF H+ L +   +L ++PI  A LF  FIG+LNFQRR
Sbjct: 589 ETTTISAFLRHYFGFHHNQLPLVGAILILFPILIAFLFGFFIGKLNFQRR 638

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816648|ref|XP_002876207.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata] gi|297322045|gb|EFH52466.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata]

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 145/230 (63%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            D QQ +F + G++   V+F G+ NC+  + Y++TE  V+Y ERFAGMYS  AYALGQ++ 
Sbjct: 1221 DTQQGMFTVFGAIYGLVLFLGINNCSSAIQYIETERNVMYRERFAGMYSATAYALGQVVT 1280

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PYIF Q   F+++TYPM+ +Y S YK+F   Y M CSLL +NYL M L+ +TPN+MVA
Sbjct: 1281 EIPYIFIQAAEFVIITYPMIGFYPSTYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVA 1340

Query: 154  AILSSAYHTMLNLFSGFFI--------------LEPT----------------RKLRYFG 183
            AIL S ++   NLFSGF I              L PT                 K+  FG
Sbjct: 1341 AILQSLFYVNFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFFSSQYGDIDEKINVFG 1400

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            E+ TVA FLK  FGF HD LA+TA+V   +PIA AS+FA F+G+LNFQRR
Sbjct: 1401 ESTTVARFLKDYFGFHHDRLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477643|ref|XP_002266393.2| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera]

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 112/230 (48%), Positives = 148/230 (64%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            DN Q+LFNI GS+  AVIF G+ NC+ VLP+V TE TVVY E+FAGMYS  AY+  Q+  
Sbjct: 1263 DNAQDLFNILGSMYLAVIFLGINNCSTVLPHVATERTVVYREKFAGMYSSRAYSFAQVAI 1322

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            EVPYI  Q  +++ +TYPM+ YY S YK+F YFY   C+ LY+ YLGML++ L+PN  VA
Sbjct: 1323 EVPYILLQAILYVAITYPMIGYYWSPYKVFWYFYATFCTFLYFVYLGMLIVSLSPNSQVA 1382

Query: 154  AILSSAYHTMLNLFSGFFILEP------------------------------TRKLRYFG 183
            +IL++A +T+LNLFSGF +  P                               +++  FG
Sbjct: 1383 SILATAAYTILNLFSGFLMPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMKKEILIFG 1442

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            E K V++FLK  FGF HDHL + A+ L ++P+ FASLFA FI +LNFQRR
Sbjct: 1443 ELKPVSSFLKDYFGFQHDHLGLVAVALLVFPVVFASLFAYFIDKLNFQRR 1492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736800|emb|CBI26001.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 112/230 (48%), Positives = 148/230 (64%), Gaps = 30/230 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
            DN Q+LFNI GS+  AVIF G+ NC+ VLP+V TE TVVY E+FAGMYS  AY+  Q+  
Sbjct: 1257 DNAQDLFNILGSMYLAVIFLGINNCSTVLPHVATERTVVYREKFAGMYSSRAYSFAQVAI 1316

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            EVPYI  Q  +++ +TYPM+ YY S YK+F YFY   C+ LY+ YLGML++ L+PN  VA
Sbjct: 1317 EVPYILLQAILYVAITYPMIGYYWSPYKVFWYFYATFCTFLYFVYLGMLIVSLSPNSQVA 1376

Query: 154  AILSSAYHTMLNLFSGFFILEP------------------------------TRKLRYFG 183
            +IL++A +T+LNLFSGF +  P                               +++  FG
Sbjct: 1377 SILATAAYTILNLFSGFLMPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMKKEILIFG 1436

Query: 184  ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
            E K V++FLK  FGF HDHL + A+ L ++P+ FASLFA FI +LNFQRR
Sbjct: 1437 ELKPVSSFLKDYFGFQHDHLGLVAVALLVFPVVFASLFAYFIDKLNFQRR 1486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2049867	1413	ABCG33 "ATP-binding cassette G	0.609	0.100	0.471	4.3e-56
TAIR|locus:2084081	1450	ABCG37 "ATP-binding cassette G	0.738	0.118	0.421	4e-42
TAIR|locus:2196593	1423	ABCG40 "ATP-binding cassette G	0.605	0.099	0.375	5.3e-36
TAIR|locus:2037703	1442	ABCG35 "ATP-binding cassette G	0.605	0.097	0.382	6.1e-35
TAIR|locus:2025931	1469	PEN3 "PENETRATION 3" [Arabidop	0.605	0.095	0.397	8.2e-35
TAIR|locus:2039523	1420	ABCG32 "ATP-binding cassette G	0.596	0.097	0.395	1.6e-33
TAIR|locus:2094952	1416	ABCG29 "ATP-binding cassette G	0.609	0.100	0.352	3.6e-28
TAIR|locus:2019693	1454	ABCG39 "ATP-binding cassette G	0.678	0.108	0.354	3.7e-28
TAIR|locus:2044893	1453	ABCG34 "ATP-binding cassette G	0.678	0.108	0.360	4.7e-28
TAIR|locus:2045683	1426	ABCG31 "ATP-binding cassette G	0.660	0.107	0.331	1.6e-26

TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 4.3e-56, Sum P(3) = 4.3e-56
 Identities = 67/142 (47%), Positives = 89/142 (62%)

Query:    34 DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
             D QQNLF + G++   V+F G+ NCT  L Y +TE  V+Y ERFAGMYS  AYAL Q++ 
Sbjct:  1184 DTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVT 1243

Query:    94 EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXXXXXXXXXXXTPNYMVA 153
             E+PYIF Q+  F++V YPM+ +Y S  K+F   Y M C+              TPN+MVA
Sbjct:  1244 EIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVA 1303

Query:   154 AILSSAYHTMLNLFSGFFILEP 175
             AIL S + T  N+F+GF I +P
Sbjct:  1304 AILQSLFFTTFNIFAGFLIPKP 1325

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
 Identities = 75/178 (42%), Positives = 102/178 (57%)

Query:    34 DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
             D QQ++F + G++   V+F G+ NC   L Y +TE  V+Y ERFAGMYS  AYALGQ++ 
Sbjct:  1221 DTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVT 1280

Query:    94 EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXXXXXXXXXXXTPNYMVA 153
             E+PYIF Q   F++VTYPM+ +Y S YK+F   Y M CS              TPN+MVA
Sbjct:  1281 EIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVA 1340

Query:   154 AILSSAYHTMLNLFSGFFILEPTRK-----LRYFGETK-TVAAFLKHCFGFDHDHLAI 205
             AIL S ++   NLFSGF I +         L Y   T  T+  F+   +G  H+ + +
Sbjct:  1341 AILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINV 1398

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0009926 "auxin polar transport" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
 Identities = 53/141 (37%), Positives = 79/141 (56%)

Query:    36 QQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEV 95
             +Q+L N  GS+  AV+F GL N   V P V  E TV Y E+ AGMYS + YA  Q+  E+
Sbjct:  1198 RQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEI 1257

Query:    96 PYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXXXXXXXXXXXTPNYMVAAI 155
             PY+  Q  ++ ++ Y M+ +  +  K F Y + M  S              TPN+ +A++
Sbjct:  1258 PYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASV 1317

Query:   156 LSSAYHTMLNLFSGFFILEPT 176
             +SSA++ + NLFSGF I  P+
Sbjct:  1318 VSSAFYGIWNLFSGFLIPRPS 1338

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0015692 "lead ion transport" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=RCA;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=TAS

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA;TAS

GO:0010193 "response to ozone" evidence=IEP

GO:0046865 "terpenoid transport" evidence=IDA

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 6.1e-35, Sum P(3) = 6.1e-35
 Identities = 54/141 (38%), Positives = 79/141 (56%)

Query:    35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAE 94
             N Q+L  + G++ AAV+F G+ NC+ V P V  E TV Y E+ AGMYS + YA+ Q+  E
Sbjct:  1212 NVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCE 1271

Query:    95 VPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXXXXXXXXXXXTPNYMVAA 154
             +PY+  QT  + ++ Y MV +     K   + ++   S              TPN  VA+
Sbjct:  1272 LPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVAS 1331

Query:   155 ILSSAYHTMLNLFSGFFILEP 175
             I +SA++ + NLFSGFFI  P
Sbjct:  1332 IFASAFYGIFNLFSGFFIPRP 1352

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 8.2e-35, Sum P(3) = 8.2e-35
 Identities = 56/141 (39%), Positives = 79/141 (56%)

Query:    35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAE 94
             N  +L  + G+L AA+IF G+ NC+ V P V  E TV Y ER AGMYS + YA+ Q+  E
Sbjct:  1239 NAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQVTCE 1298

Query:    95 VPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXXXXXXXXXXXTPNYMVAA 154
             +PY+  QT  + ++ Y MV +     K F + ++   S              TPN  VA+
Sbjct:  1299 LPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVAS 1358

Query:   155 ILSSAYHTMLNLFSGFFILEP 175
             I +SA++ + NLFSGFFI  P
Sbjct:  1359 IFASAFYGIFNLFSGFFIPRP 1379

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA;IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0015691 "cadmium ion transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0042344 "indole glucosinolate catabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
 Identities = 55/139 (39%), Positives = 74/139 (53%)

Query:    34 DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
             D QQ LFN  GS+ AAV+F G+ N T   P V  E  V Y ER AGMYS L +A  Q+  
Sbjct:  1189 DTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFI 1248

Query:    94 EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXXXXXXXXXXXTPNYMVA 153
             E PY+  Q+ I+  + Y M  +  S  K   Y + M  S              TPN+ VA
Sbjct:  1249 EFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVA 1308

Query:   154 AILSSAYHTMLNLFSGFFI 172
             +I+++ ++ + NLFSGF I
Sbjct:  1309 SIIAAPFYMLWNLFSGFMI 1327

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0042335 "cuticle development" evidence=IMP

TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
 Identities = 50/142 (35%), Positives = 80/142 (56%)

Query:    34 DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
             +N  +L  + G++ AAV+F G+ N + V P +  E +V Y ER A MYS L YAL Q++ 
Sbjct:  1185 ENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVC 1244

Query:    94 EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXXXXXXXXXXXTPNYMVA 153
             E+PY+  QT  + ++ Y M+ +  ++ K F ++++   S              TPN  VA
Sbjct:  1245 EIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVA 1304

Query:   154 AILSSAYHTMLNLFSGFFILEP 175
             A+ + A++ + NLFSGF I  P
Sbjct:  1305 AVFAGAFYGLFNLFSGFVIPRP 1326

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015850 "organic hydroxy compound transport" evidence=IDA

GO:1901140 "p-coumaryl alcohol transport" evidence=IDA

GO:1901141 "regulation of lignin biosynthetic process" evidence=IMP

TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
 Identities = 56/158 (35%), Positives = 84/158 (53%)

Query:    18 LGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERF 77
             +GV    I+       +N+Q+L N  G++ AAV+F G +N   V P +  E TV Y E+ 
Sbjct:  1208 IGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKA 1267

Query:    78 AGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXX 137
             AGMYS + YA+ Q+  E+ Y   QTG++ ++ Y M+    ++ K   ++Y ML S     
Sbjct:  1268 AGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFT 1327

Query:   138 XXXXXXXXXTPNYMVAAILSSAYHTMLNLFSGFFILEP 175
                      TPNY +A I  S + ++ NLFSGF I  P
Sbjct:  1328 LYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRP 1365

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS;IMP

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 4.7e-28, Sum P(2) = 4.7e-28
 Identities = 57/158 (36%), Positives = 83/158 (52%)

Query:    18 LGVDLARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERF 77
             +GV    ++  +    + +Q+L N  G++ AAV+F G  N   V P V  E TV Y E+ 
Sbjct:  1207 IGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKA 1266

Query:    78 AGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXX 137
             AGMYS + YA+ Q+  E+ Y   QTG++ ++ Y M+ Y  +V K F ++Y ML       
Sbjct:  1267 AGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFT 1326

Query:   138 XXXXXXXXXTPNYMVAAILSSAYHTMLNLFSGFFILEP 175
                      TPNY +A I  S + +  NLFSGF I  P
Sbjct:  1327 LYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRP 1364

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
 Identities = 51/154 (33%), Positives = 83/154 (53%)

Query:    22 LARIYRDSALYDDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMY 81
             L  ++ D      + Q+L  + G+L +A +F G+ N + V P V  E TV Y E+ AGMY
Sbjct:  1185 LGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMY 1244

Query:    82 SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSXXXXXXXXX 141
             +P+ YA  Q + E+PYI  QT ++ ++TY  + +  +  K   Y   M  +         
Sbjct:  1245 APIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGM 1304

Query:   142 XXXXXTPNYMVAAILSSAYHTMLNLFSGFFILEP 175
                  TPN  +AA++SSA++++ NL SGF + +P
Sbjct:  1305 MAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKP 1338

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022530001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (546 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	1e-44
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-21
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	6e-16
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	3e-08
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-07
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	7e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	0.003

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  159 bits (404), Expect = 1e-44
 Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 32/232 (13%)

Query: 34   DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
             N  +L  + G++ AAV+F G+ NC+ V P V  E TV Y ER AGMYS L YA+ Q++ 
Sbjct: 1239 SNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVC 1298

Query: 94   EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
            E+PY+  QT  + ++ Y MV +  +  K F ++++   S LY+ Y GM+ + LTPN  VA
Sbjct: 1299 EIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVA 1358

Query: 154  AILSSAYHTMLNLFSGFFI--------------------------------LEPTRKLRY 181
            AI ++A++ + NLFSGFFI                                +E T K+  
Sbjct: 1359 AIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPG 1418

Query: 182  FGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233
                 T+  +++  +G+D D +   A VL  + + FA +FA  I  LNFQ R
Sbjct: 1419 GAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 91.7 bits (228), Expect = 3e-21
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 33   DDNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQII 92
              + Q L N   ++  A +    +    + P+V         ER +  +S LA+   QI 
Sbjct: 1120 GTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQIT 1179

Query: 93   AEVPYIFFQTGIFIMVTYPMVEYY------GSVYKIFCYFYMMLC-SLLYYNYLGMLLML 145
             E+PY      IF  + Y  V +Y      G V++    F+++     LY++ LG +++ 
Sbjct: 1180 VEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVIS 1239

Query: 146  LTPNYMVAAILSSAYHTMLNLFSGFFI 172
              PN   AA+L+S   TM   F G   
Sbjct: 1240 FNPNADNAAVLASLLFTMCLSFCGVLA 1266

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 73.1 bits (180), Expect = 6e-16
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 34  DNQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIA 93
           D      N  G L  +++F+   + T + P    E  V+  E  + +YSP AY L +I+ 
Sbjct: 44  DTSLGGLNRPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILV 103

Query: 94  EVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVA 153
           E+P    Q  IF+++ Y MV    S  + F +  ++L + L  + LG+ +  L P++  A
Sbjct: 104 ELPISLLQAIIFLLIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDA 161

Query: 154 AILSSAYHTMLNLFSGFFI 172
           + +       L L SGFFI
Sbjct: 162 SQIGPLLLLPLLLLSGFFI 180

Length = 210

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 41  NIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFF 100
           NI+G+L   +      N   V+     EL V   E  +G+Y   AY L + IAE+P    
Sbjct: 391 NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFII 450

Query: 101 QTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNY---LGMLLMLLTPNYMVAAILS 157
              +F  +TY M+           +   +    L  N     G L+     +  +A  + 
Sbjct: 451 LPALFTSITYWMIGLRSGATH---FLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507

Query: 158 SAYHTMLNLFSGFFI 172
             +     LF GFFI
Sbjct: 508 PPFVIPFLLFGGFFI 522

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 3    ATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQ 36
            ATWMLEVSS +AE +LG+D A  Y+ S+LY  N+
Sbjct: 1132 ATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNK 1165

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 44  GSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTG 103
           G+L  A++F+   +  L +  +     +V   R   +Y P A A+  II+E+P+   ++ 
Sbjct: 455 GALFFAILFNAF-SSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESV 513

Query: 104 IFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTM 163
           +F ++ Y MV +  +  + F Y  ++    L  ++L   +  +T     A   ++     
Sbjct: 514 VFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLA 573

Query: 164 LNLFSGFFI 172
           L++++GF I
Sbjct: 574 LSIYTGFAI 582

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 3    ATWMLEVSSKSAEAQLGVDLARIYRDSALYDDNQQNLFNIHGSLSAA 49
            A WMLEV   +  A    D   ++R+S+ Y   +  L  +   LS A
Sbjct: 1014 AEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKA 1060

[Transport and binding proteins, Other]. Length = 1394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.98
PLN03140	1470	ABC transporter G family member; Provisional	99.97
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.97
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.95
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.3
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	98.85
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	98.68
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	98.62
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	98.45
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	98.34
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	98.25
PRK15066	257	inner membrane transport permease; Provisional	98.14
COG0842	286	ABC-type multidrug transport system, permease comp	98.12
TIGR01248	152	drrC daunorubicin resistance protein C. The model	97.41
PF08370	65	PDR_assoc: Plant PDR ABC transporter associated; I	97.18
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	97.11
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	97.0
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	96.66
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	96.2
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	95.92
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	95.24
COG1277	278	NosY ABC-type transport system involved in multi-c	95.13
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	94.36
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	93.59
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	92.63
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	90.58

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=4.6e-38  Score=313.71  Aligned_cols=232  Identities=42%  Similarity=0.756  Sum_probs=210.3

Q ss_pred             ccchhccccccccccccCCcHHHHhhhcccccc-----------------------------------------------
Q 047475            2 MATWMLEVSSKSAEAQLGVDLARIYRDSALYDD-----------------------------------------------   34 (233)
Q Consensus         2 ~A~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~-----------------------------------------------   34 (233)
                      -||||+|+++++.+.+.+.||++.|++|++++.                                               
T Consensus      1131 PAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p 1210 (1470)
T PLN03140       1131 PATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSP 1210 (1470)
T ss_pred             chhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCH
Confidence            389999999987665556799999999876533                                               


Q ss_pred             --------------------------C---ccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHH
Q 047475           35 --------------------------N---QQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLA   85 (233)
Q Consensus        35 --------------------------~---~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~   85 (233)
                                                +   ..|++++.|++|+++++.++..+.+++|.+..||++|+|||++|+|++.+
T Consensus      1211 ~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~ 1290 (1470)
T PLN03140       1211 DYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALP 1290 (1470)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHH
Confidence                                      2   35788899999999999999888888899999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 047475           86 YALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLN  165 (233)
Q Consensus        86 y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~  165 (233)
                      |++|++++|+|+.++.+++|.+|+|||+|+++++.+|++|++++++..+++.++|+++++++||..+|..+++++..+++
T Consensus      1291 y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~ 1370 (1470)
T PLN03140       1291 YAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFN 1370 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccCCC-----------Cee-------------------ecCCC--cccHHHHHHhHhCCcccchhhHHHHHHHH
Q 047475          166 LFSGFFILEPT-----------RKL-------------------RYFGE--TKTVAAFLKHCFGFDHDHLAITAIVLAIY  213 (233)
Q Consensus       166 lf~G~~i~~~~-----------~~l-------------------~~~g~--~~~~~~~l~~~~~~~~~~~~~~~~iL~~~  213 (233)
                      +|+||++|+++           +|+                   .|+|.  ..+++++++++||++++++|+++++++++
T Consensus      1371 lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~ 1450 (1470)
T PLN03140       1371 LFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGF 1450 (1470)
T ss_pred             HHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHH
Confidence            99999999888           111                   12331  24678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccC
Q 047475          214 PIAFASLFASFIGRLNFQRR  233 (233)
Q Consensus       214 ~v~~~~l~~~~L~~~~~~kr  233 (233)
                      +++|++++++++|+.|+|||
T Consensus      1451 ~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140       1451 TVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred             HHHHHHHHHHHHHHhhcccC
Confidence            99999999999999999998

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=4.5e-33  Score=260.15  Aligned_cols=199  Identities=21%  Similarity=0.286  Sum_probs=181.8

Q ss_pred             CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475           35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE  114 (233)
Q Consensus        35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g  114 (233)
                      ++++++++.|++|++.+..++.++...++.++.||++++||+++|+|++++|++||+++|+|..++.+++|.+|+|||+|
T Consensus       385 ~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~g  464 (617)
T TIGR00955       385 TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIG  464 (617)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheecc
Confidence            77899999999999998888888778889999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC------------------
Q 047475          115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT------------------  176 (233)
Q Consensus       115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~------------------  176 (233)
                      +++++.+|+.|++++++..+++.++|+++++++||...|..++++++.++++|+|+++++++                  
T Consensus       465 l~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~  544 (617)
T TIGR00955       465 LRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGN  544 (617)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998877                  


Q ss_pred             -----Ce------eecCC-----CcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475          177 -----RK------LRYFG-----ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR  233 (233)
Q Consensus       177 -----~~------l~~~g-----~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr  233 (233)
                           |+      .+|++     .|...++++++.+|++.++.|.|+++|++++++|++++|++||++.+++|
T Consensus       545 ~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~  617 (617)
T TIGR00955       545 EGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR  617 (617)
T ss_pred             HHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                 11      13542     14223466778999999999999999999999999999999999888776

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3.6e-33  Score=279.04  Aligned_cols=196  Identities=20%  Similarity=0.207  Sum_probs=170.0

Q ss_pred             CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhH-HhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhccc
Q 047475           35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVV-YWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMV  113 (233)
Q Consensus        35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~-~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~  113 (233)
                      ++.++|||.|++|+.+++.++. ..++++.|+.||.++ +||+++|+|++.+|++|++++|+|+.++.+++|.+|+||++
T Consensus      1122 ~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~ 1200 (1394)
T TIGR00956      1122 SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPV 1200 (1394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecc
Confidence            6889999999999987777665 356678999999996 89999999999999999999999999999999999999999


Q ss_pred             ccccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC----------
Q 047475          114 EYYGSVYK-------IFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT----------  176 (233)
Q Consensus       114 gl~~~~~~-------f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~----------  176 (233)
                      |+++++..       |+.+++++++..++++++|+++++++||..+|..+++++..++++|||+++|+++          
T Consensus      1201 Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~ 1280 (1394)
T TIGR00956      1201 GFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYR 1280 (1394)
T ss_pred             cccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHh
Confidence            99877654       9999999999999999999999999999999999999999999999999999877          


Q ss_pred             ------------------CeeecCC------------------------------------Cc----c-cHHHHHHhHhC
Q 047475          177 ------------------RKLRYFG------------------------------------ET----K-TVAAFLKHCFG  197 (233)
Q Consensus       177 ------------------~~l~~~g------------------------------------~~----~-~~~~~l~~~~~  197 (233)
                                        .++.|++                                    .|    . ++.+++ +.++
T Consensus      1281 ~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~ 1359 (1394)
T TIGR00956      1281 CSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPIS 1359 (1394)
T ss_pred             cCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcC
Confidence                              1122310                                    13    2 456654 7889


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475          198 FDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR  233 (233)
Q Consensus       198 ~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr  233 (233)
                      ++.++.|+|+++++++++++ ++++++|+++.+.+|
T Consensus      1360 ~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~k 1394 (1394)
T TIGR00956      1360 SKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVPK 1394 (1394)
T ss_pred             CcccccccchhhhhHHHHHH-HHHHHhhheEEEcCC
Confidence            99999999999999999999 888888888754443

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.1e-33  Score=269.00  Aligned_cols=232  Identities=39%  Similarity=0.589  Sum_probs=208.3

Q ss_pred             ccchhccccccccccccCCcHHHHhhhcccccc-----------------------------------------------
Q 047475            2 MATWMLEVSSKSAEAQLGVDLARIYRDSALYDD-----------------------------------------------   34 (233)
Q Consensus         2 ~A~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~-----------------------------------------------   34 (233)
                      .|||||||+++++++..++||+++|++|+|++.                                               
T Consensus      1041 PA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRs 1120 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRS 1120 (1391)
T ss_pred             hHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence            499999999999888888999999999999887                                               


Q ss_pred             ---------------------------CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHH
Q 047475           35 ---------------------------NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYA   87 (233)
Q Consensus        35 ---------------------------~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~   87 (233)
                                                 +.+|+||..|++|.++++.+........+....||.+++||+++|+|++.+|.
T Consensus      1121 p~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~ 1200 (1391)
T KOG0065|consen 1121 PDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFA 1200 (1391)
T ss_pred             cHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHH
Confidence                                       78999999999999988887776555557778888888999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 047475           88 LGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLF  167 (233)
Q Consensus        88 la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf  167 (233)
                      +|++++|+|+.++++.+|.+|+|+++|+..++.++++|++.++++.++..++|+++.+++||.+.|..+.+.+.....+|
T Consensus      1201 ~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F 1280 (1391)
T KOG0065|consen 1201 LAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLF 1280 (1391)
T ss_pred             HHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCC-----------Ce-----------------eecC--C-------CcccHHHHHHhHhC----CcccchhhH
Q 047475          168 SGFFILEPT-----------RK-----------------LRYF--G-------ETKTVAAFLKHCFG----FDHDHLAIT  206 (233)
Q Consensus       168 ~G~~i~~~~-----------~~-----------------l~~~--g-------~~~~~~~~l~~~~~----~~~~~~~~~  206 (233)
                      ||+++|++.           +|                 ..|.  +       ...+.+|++++.+|    +..|.....
T Consensus      1281 ~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~ 1360 (1391)
T KOG0065|consen 1281 SGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATT 1360 (1391)
T ss_pred             cccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCccee
Confidence            999999877           22                 2353  1       12578999999998    777776667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475          207 AIVLAIYPIAFASLFASFIGRLNFQRR  233 (233)
Q Consensus       207 ~~iL~~~~v~~~~l~~~~L~~~~~~kr  233 (233)
                      -.+.+++.+.+..++.+++|+.+++||
T Consensus      1361 ~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1361 ACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred             EEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence            777888999999999999999998876

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=6.7e-32  Score=253.07  Aligned_cols=196  Identities=18%  Similarity=0.176  Sum_probs=168.6

Q ss_pred             CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475           35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE  114 (233)
Q Consensus        35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g  114 (233)
                      +++++++|.|++|+++++.++.++..+++.|+.||++++||+.+|+|++++|++||+++|+|+.++.+++|.+|+|||+|
T Consensus       431 ~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~G  510 (659)
T PLN03211        431 DFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG  510 (659)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCC
Confidence            67889999999999989988887778889999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC------------------
Q 047475          115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT------------------  176 (233)
Q Consensus       115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~------------------  176 (233)
                      +++++.+|+.|++++++..++++++|+++++++||...|+.++++++.++++|+||+++.-.                  
T Consensus       511 l~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~ea  590 (659)
T PLN03211        511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRL  590 (659)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999986111                  


Q ss_pred             ---Ce----------eecCCC-cc-cHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047475          177 ---RK----------LRYFGE-TK-TVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNF  230 (233)
Q Consensus       177 ---~~----------l~~~g~-~~-~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~  230 (233)
                         ++          +.|++. |. +..-.+.+...++..+.|.|+++|+++.++|++++|++||+.+|
T Consensus       591 l~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~  659 (659)
T PLN03211        591 LINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH  659 (659)
T ss_pred             HHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               11          135321 10 00000122234445679999999999999999999999997664

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.98  E-value=1e-31  Score=268.56  Aligned_cols=194  Identities=19%  Similarity=0.302  Sum_probs=178.2

Q ss_pred             CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475           35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE  114 (233)
Q Consensus        35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g  114 (233)
                      |++++++|.|++|+++++.++.++.++ +.+..||++++||+++|+|++++|++|++++|+|+.++.+++|.+|+|||+|
T Consensus       446 ~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~g  524 (1394)
T TIGR00956       446 NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVN  524 (1394)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCC
Confidence            778999999999999999999887665 6778899999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC------------------
Q 047475          115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT------------------  176 (233)
Q Consensus       115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~------------------  176 (233)
                      +++++++|+.|++++++..+++.++++++++++||...|+.+++++++++++|+||++|.++                  
T Consensus       525 l~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yaf  604 (1394)
T TIGR00956       525 FRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAF  604 (1394)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888                  


Q ss_pred             -----C-----eeecC-----C-----------Cc-----------ccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHH
Q 047475          177 -----R-----KLRYF-----G-----------ET-----------KTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFAS  219 (233)
Q Consensus       177 -----~-----~l~~~-----g-----------~~-----------~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~  219 (233)
                           |     +++|+     |           .|           .+|.+++...|+++.++.|+|+++|+++.++|++
T Consensus       605 eal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~  684 (1394)
T TIGR00956       605 ESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFF  684 (1394)
T ss_pred             HHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHH
Confidence                 1     23462     0           12           3677888778999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 047475          220 LFASFIGRLN  229 (233)
Q Consensus       220 l~~~~L~~~~  229 (233)
                      ++++++++.+
T Consensus       685 ~~~l~l~~~~  694 (1394)
T TIGR00956       685 VYILLTEFNK  694 (1394)
T ss_pred             HHHHHHHhcc
Confidence            9999999876

>PLN03140 ABC transporter G family member; Provisional

Probab=99.97  E-value=1.8e-30  Score=259.59  Aligned_cols=191  Identities=16%  Similarity=0.207  Sum_probs=169.6

Q ss_pred             cchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccc
Q 047475           37 QNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYY  116 (233)
Q Consensus        37 ~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~  116 (233)
                      .+.+.+.|++|+++++.++.++.+ ++.++.||++|+|||++++|++++|++|++++|+|..++.+++|.+|+|||+|++
T Consensus       565 ~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~  643 (1470)
T PLN03140        565 EDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFA  643 (1470)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence            346778899999988888877655 5899999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC--------------------
Q 047475          117 GSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT--------------------  176 (233)
Q Consensus       117 ~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~--------------------  176 (233)
                      +++++|+.|++++++..+++.++++++++++||...|+.+++++++++++|+||++|+++                    
T Consensus       644 ~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~ea  723 (1470)
T PLN03140        644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNA  723 (1470)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888                    


Q ss_pred             ---Ceee--------cCCCc-ccHHHHHHhHhCCccc--chhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047475          177 ---RKLR--------YFGET-KTVAAFLKHCFGFDHD--HLAITAIVLAIYPIAFASLFASFIGRLN  229 (233)
Q Consensus       177 ---~~l~--------~~g~~-~~~~~~l~~~~~~~~~--~~~~~~~iL~~~~v~~~~l~~~~L~~~~  229 (233)
                         |++.        |.+.+ .+|.+++ +.+|++.+  ..|+++++|++++++|+++++++|++.+
T Consensus       724 l~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~  789 (1470)
T PLN03140        724 LAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN  789 (1470)
T ss_pred             HHHHhccCccccCcccCCCCcccHHHHH-HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence               2221        11222 3455555 88999865  4589999999999999999999999876

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=1.7e-29  Score=234.83  Aligned_cols=199  Identities=21%  Similarity=0.322  Sum_probs=180.9

Q ss_pred             CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475           35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE  114 (233)
Q Consensus        35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g  114 (233)
                      ++.+++++.|++|+.+.++.+..+.++++.|+.||+++.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|
T Consensus       382 ~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~g  461 (613)
T KOG0061|consen  382 DAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVG  461 (613)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence            67888899999999999998988888889999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC------------------
Q 047475          115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT------------------  176 (233)
Q Consensus       115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~------------------  176 (233)
                      ++++..+|+.+.+++++..++++++|+++++..||...|..++++++.++++++|++++.++                  
T Consensus       462 l~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~  541 (613)
T KOG0061|consen  462 LNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAF  541 (613)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999887                  


Q ss_pred             -----C-----eeecC----CCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475          177 -----R-----KLRYF----GETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR  233 (233)
Q Consensus       177 -----~-----~l~~~----g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr  233 (233)
                           +     ...|.    ..|...++.++++.+++.++.|.|+.+++++.++|++++|++||++.+.+|
T Consensus       542 e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~  612 (613)
T KOG0061|consen  542 EALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR  612 (613)
T ss_pred             HHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence                 1     11232    123344555568889999999999999999999999999999999876654

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.95  E-value=4.5e-27  Score=225.77  Aligned_cols=196  Identities=18%  Similarity=0.283  Sum_probs=177.9

Q ss_pred             CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475           35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE  114 (233)
Q Consensus        35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g  114 (233)
                      +..|.+.|.|++||++++.++..+.++ +...+.|++++|||....|+++++.++..+.++|..++.+++|.+|.||++|
T Consensus       485 t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~g  563 (1391)
T KOG0065|consen  485 TTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIG  563 (1391)
T ss_pred             ccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence            456789999999999999999887665 8888999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----------Cee----
Q 047475          115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----------RKL----  179 (233)
Q Consensus       115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----------~~l----  179 (233)
                      +.+++++||.+++.++++..++.++..++++++++...|+.++++.++...+++||.+|.++           +|+    
T Consensus       564 l~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~f  643 (1391)
T KOG0065|consen  564 LKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAF  643 (1391)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988           221    


Q ss_pred             -------------ecC-----------------------CCc-ccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHH
Q 047475          180 -------------RYF-----------------------GET-KTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFA  222 (233)
Q Consensus       180 -------------~~~-----------------------g~~-~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~  222 (233)
                                   .|.                       |.. +.+.++++.+|++++.+.|+++++++|+.++|.++..
T Consensus       644 esl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~  723 (1391)
T KOG0065|consen  644 ESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFL  723 (1391)
T ss_pred             HHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHH
Confidence                         342                       111 3566777788888999999999999999999999999


Q ss_pred             HHHHhhhcc
Q 047475          223 SFIGRLNFQ  231 (233)
Q Consensus       223 ~~L~~~~~~  231 (233)
                      +++.|++..
T Consensus       724 ia~~yl~p~  732 (1391)
T KOG0065|consen  724 IALEYLKPL  732 (1391)
T ss_pred             HHHHhcCcc
Confidence            999998743

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.30  E-value=5.6e-14  Score=113.35  Aligned_cols=155  Identities=25%  Similarity=0.353  Sum_probs=132.9

Q ss_pred             CcHHHHhhhcccc-cc--------------------CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhcc
Q 047475           20 VDLARIYRDSALY-DD--------------------NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFA   78 (233)
Q Consensus        20 ~~~~~~~~~s~~~-~~--------------------~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~   78 (233)
                      |++.+.|||+... ..                    ++++..++.|.+........+....+......+||..+.||+.+
T Consensus         9 r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (210)
T PF01061_consen    9 REFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERGTLERERAS   88 (210)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcccccccccc
Confidence            5777777777665 22                    23333367888888877777565566657899999999999999


Q ss_pred             CCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 047475           79 GMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSS  158 (233)
Q Consensus        79 g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~  158 (233)
                      +.|++.+|.++|.+.+++...+.++++..+.+.+.|++.+  ++..+++.+.+..++..++|.+++.++++.+.+..+.+
T Consensus        89 ~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~  166 (210)
T PF01061_consen   89 PLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISS  166 (210)
T ss_pred             ccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhhhhhhhhhh
Confidence            9999999999999999999999999999999999999876  67778888888889999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCC
Q 047475          159 AYHTMLNLFSGFFILEPT  176 (233)
Q Consensus       159 ~~~~~~~lf~G~~i~~~~  176 (233)
                      .+..+++++||.+.|.++
T Consensus       167 ~~~~~~~~~sg~~~p~~~  184 (210)
T PF01061_consen  167 LILLLLFFLSGVFFPLSS  184 (210)
T ss_pred             hcccccccceeeecchHH
Confidence            999999999999998776

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=98.85  E-value=1.7e-07  Score=76.12  Aligned_cols=144  Identities=15%  Similarity=-0.008  Sum_probs=102.0

Q ss_pred             ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047475           82 SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYH  161 (233)
Q Consensus        82 ~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~  161 (233)
                      ++..++++|.+...+..++++.+...+.|+..|++..  ++..+++.+++..+...++|..+++..++...  .......
T Consensus        58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~  133 (208)
T TIGR03062        58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLL  133 (208)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHH
Confidence            5678899999999999999999999999998998763  56677778888889999999999999987654  3344455


Q ss_pred             HHHHHhhcccccCCCCe--eecCC--Cccc-HHHHHHh-HhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047475          162 TMLNLFSGFFILEPTRK--LRYFG--ETKT-VAAFLKH-CFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLN  229 (233)
Q Consensus       162 ~~~~lf~G~~i~~~~~~--l~~~g--~~~~-~~~~l~~-~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~  229 (233)
                      .+.+.++|.+.|.+.-|  +..=.  .+.+ .-|-+.+ .++-+..+.|.++++++++.+++.+++....|++|
T Consensus       134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~~~~~~~~~~~L~~~~~v~~~la~~~~~~~~  207 (208)
T TIGR03062       134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGNDGTLWQAVAVLLLILVVFLALSLLSARRKR  207 (208)
T ss_pred             HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            56777888888877711  11000  0101 1111111 12212346788999999999999999888877543

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=98.68  E-value=2.4e-06  Score=70.76  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=101.4

Q ss_pred             CChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047475           81 YSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAY  160 (233)
Q Consensus        81 Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~  160 (233)
                      -++..|+++|.+.+++..+++..+...+.++..+.+.  ..+....+...+......++|.+++...+|.+.+..+.+.+
T Consensus        87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~  164 (236)
T TIGR01247        87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSML  164 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3678999999999999999999998888888776543  33444455555666777899999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCe--ee----cCCCcccHHHHHHh-HhCCc-ccchhhHHHHHHHHHHHHHHHHHH
Q 047475          161 HTMLNLFSGFFILEPTRK--LR----YFGETKTVAAFLKH-CFGFD-HDHLAITAIVLAIYPIAFASLFAS  223 (233)
Q Consensus       161 ~~~~~lf~G~~i~~~~~~--l~----~~g~~~~~~~~l~~-~~~~~-~~~~~~~~~iL~~~~v~~~~l~~~  223 (233)
                      ..+...+||.+.|.+.-|  +.    +.. ....-|-..+ ..|-+ ..+.+.++++++.+.+++..++..
T Consensus       165 ~~~l~~lsG~~~P~~~~P~~~~~i~~~~P-~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       165 MLPMFFLSGAFYPITTMPAWMQGLAKINP-LTYAVDGARYYLAGVSPTFPLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             HHHHHHHHHhhcCHHhCHHHHHHHHHHCc-HHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999977611  10    000 0011111211 12222 346778999999999999888764

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=98.62  E-value=5.2e-06  Score=69.73  Aligned_cols=150  Identities=17%  Similarity=0.168  Sum_probs=102.8

Q ss_pred             hHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 047475           71 VVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGML  142 (233)
Q Consensus        71 v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~  142 (233)
                      .+.|||++|.+        ++..+.++|.+.+.-..+++.++...+.+ ..|..+. .+....+..+++..+...++|.+
T Consensus        81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~  158 (253)
T TIGR01291        81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAFASLSML  158 (253)
T ss_pred             HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555553        67899999999887777777666555443 3344332 33444445556667777789999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHh-HhCCcccchhhHHHHH
Q 047475          143 LMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKH-CFGFDHDHLAITAIVL  210 (233)
Q Consensus       143 i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~-~~~~~~~~~~~~~~iL  210 (233)
                      ++...++.+.+..+...+..+++..||.+.|.++           ||++      ..-|.+.+ .+|-+..+.+.+++++
T Consensus       159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt------~~v~~~R~~~~g~~~~~~~~~~~~l  232 (253)
T TIGR01291       159 VAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLA------HSIDDIRPVMLGGPGTQVGLHLGAL  232 (253)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHH------HHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9999999999999999999999999999998777           2321      11222211 1232222456788999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 047475          211 AIYPIAFASLFASFIGRL  228 (233)
Q Consensus       211 ~~~~v~~~~l~~~~L~~~  228 (233)
                      +++.+++..++....|++
T Consensus       233 ~~~~vv~~~la~~~fr~~  250 (253)
T TIGR01291       233 CLYAVVPFFISAALLRRR  250 (253)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999888888777654

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=98.45  E-value=2.2e-05  Score=64.88  Aligned_cols=144  Identities=15%  Similarity=0.095  Sum_probs=92.5

Q ss_pred             ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHH
Q 047475           82 SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTP---NYMVAAILSS  158 (233)
Q Consensus        82 ~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~---~~~~a~~~~~  158 (233)
                      ++..|+++|.+.+.+..+++..+.. +.++..|++.... ....+....+....+..++.+++.+.+   +.+.+..+..
T Consensus        77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~  154 (232)
T TIGR00025        77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN  154 (232)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            7899999999988888877765555 4456778875433 233344444555666677777777774   4455577888


Q ss_pred             HHHHHHHHhhcccccCCCCe--eec--CCCcc-cHHHHHHhHh--CCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 047475          159 AYHTMLNLFSGFFILEPTRK--LRY--FGETK-TVAAFLKHCF--GFDHDHLAITAIVLAIYPIAFASLFASFIGR  227 (233)
Q Consensus       159 ~~~~~~~lf~G~~i~~~~~~--l~~--~g~~~-~~~~~l~~~~--~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~  227 (233)
                      .+..+..++||.+.|.+.-|  +.-  .-.+. -.-|-+.+..  +-+....+.++++++++.+++..++....||
T Consensus       155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~v~~~la~~~~~r  230 (232)
T TIGR00025       155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSVDTFGAVRDLVVVLAFWVALAALAAIRLRR  230 (232)
T ss_pred             HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88899999999999988711  100  00000 1111121211  2233456889999999999988887776653

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.34  E-value=8.9e-07  Score=64.15  Aligned_cols=47  Identities=17%  Similarity=0.235  Sum_probs=43.9

Q ss_pred             ccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047475          186 KTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQR  232 (233)
Q Consensus       186 ~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~k  232 (233)
                      ++|.+|+...|+++.+++|+|++|+++++++|.++.++++++.+.+|
T Consensus        31 V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~   77 (103)
T PF06422_consen   31 VSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK   77 (103)
T ss_pred             EeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            68999999899999999999999999999999999999999887654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=98.25  E-value=0.00016  Score=60.49  Aligned_cols=152  Identities=9%  Similarity=-0.080  Sum_probs=96.0

Q ss_pred             hHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 047475           71 VVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNY  150 (233)
Q Consensus        71 v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~  150 (233)
                      ...|=+.... ++..+.++|.+.+.-..+++..+...+.+. .|.+.+...+......+.+......++|.+++...++.
T Consensus        90 ~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~  167 (253)
T TIGR03861        90 SMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQL  167 (253)
T ss_pred             HHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            3333343333 788899999999988877776665555442 35554433344444455556677779999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccCCCCeeecCC--------Ccc-cHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHH
Q 047475          151 MVAAILSSAYHTMLNLFSGFFILEPTRKLRYFG--------ETK-TVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLF  221 (233)
Q Consensus       151 ~~a~~~~~~~~~~~~lf~G~~i~~~~~~l~~~g--------~~~-~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~  221 (233)
                      +....+.+.+..+++..||.+.|.+.-| +.|+        ++. ..-|...+.+  ..+.-|.+++++.++.+++..++
T Consensus       168 ~~~~~i~~~~~~~l~flSgi~~p~~~~~-~~p~~l~~i~~~nPl~~~i~~~R~~~--~g~~~~~~~~~~~~~~~v~~~~~  244 (253)
T TIGR03861       168 ENFAGVMNFVIFPMFFLSSALYPLWKMQ-EASTWLYWICALNPFTHAVELVRFAL--YGQLNLPALGWTLGATTLFTLLA  244 (253)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhcc-cccHHHHHHHHhCcHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHHHHHH
Confidence            8888888888999999999988865411 0110        010 1111111111  11123667788888888888777


Q ss_pred             HHHHHh
Q 047475          222 ASFIGR  227 (233)
Q Consensus       222 ~~~L~~  227 (233)
                      ....|+
T Consensus       245 ~~~fr~  250 (253)
T TIGR03861       245 FWGFDP  250 (253)
T ss_pred             HHHhhc
Confidence            766654

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>PRK15066 inner membrane transport permease; Provisional

Probab=98.14  E-value=0.00042  Score=58.21  Aligned_cols=145  Identities=12%  Similarity=0.100  Sum_probs=93.9

Q ss_pred             CChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047475           81 YSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAY  160 (233)
Q Consensus        81 Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~  160 (233)
                      -++..+.+++++...-...+...+...+.+...|.+..  ........+++........|.+++...++.+....+.+.+
T Consensus       101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~  178 (257)
T PRK15066        101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV  178 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            37788999999887766666665555554444455432  2222333333333333345888888888888888899999


Q ss_pred             HHHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047475          161 HTMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLN  229 (233)
Q Consensus       161 ~~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~  229 (233)
                      ..+.+..||.+.|.++           ||++   ...++-+..  -.|.+..+.|.++++++++.+++..++....|+.+
T Consensus       179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt---~~v~~~R~~--~~g~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~  253 (257)
T PRK15066        179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIV---YMVNAFRYG--FLGISDVPLWLAFAVLLVFIVVLYLLAWYLLERGR  253 (257)
T ss_pred             HHHHHHHcchhccHHhChHHHHHHHHHCcHH---HHHHHHHHH--HcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999988766           2321   001111111  11322335688999999999999999999888766


Q ss_pred             ccc
Q 047475          230 FQR  232 (233)
Q Consensus       230 ~~k  232 (233)
                      +-|
T Consensus       254 ~~~  256 (257)
T PRK15066        254 GLR  256 (257)
T ss_pred             ccC
Confidence            554

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.12  E-value=0.00036  Score=58.26  Aligned_cols=147  Identities=18%  Similarity=0.247  Sum_probs=95.4

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHH
Q 047475           84 LAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLM-LLTPNYMVAAILSSAYHT  162 (233)
Q Consensus        84 ~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~-~~~~~~~~a~~~~~~~~~  162 (233)
                      ..+++++.+.......+...+...+..+..|. .....+........+......++|.+++ ...++.+.+..+...+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~  209 (286)
T COG0842         131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL  209 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            55666666666555555555555555555663 2344556566666667777778888665 366778888888889999


Q ss_pred             HHHHhhcccccCCCCe--eecCCC--cc-cHHHHHHhHh--CCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047475          163 MLNLFSGFFILEPTRK--LRYFGE--TK-TVAAFLKHCF--GFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQ  231 (233)
Q Consensus       163 ~~~lf~G~~i~~~~~~--l~~~g~--~~-~~~~~l~~~~--~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~  231 (233)
                      ++..++|.+.|.+.-|  +..-+.  +. -.-|.+.+.+  +-..++.+.++.+++++.+++.+++...+|+.+++
T Consensus       210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~  285 (286)
T COG0842         210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRNDGIWISLLILLLFAVVFLLLGLLLLRRRRKL  285 (286)
T ss_pred             HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999988722  110001  11 1222222222  22233478999999999999999999999876554

>TIGR01248 drrC daunorubicin resistance protein C

Probab=97.41  E-value=0.0031  Score=48.79  Aligned_cols=109  Identities=11%  Similarity=0.043  Sum_probs=73.1

Q ss_pred             hhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHH---HHHHHHHHHH
Q 047475           64 YVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMML---CSLLYYNYLG  140 (233)
Q Consensus        64 ~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~---l~~~~~~~~g  140 (233)
                      ..-+|+..+.|-+.+-. ++..++++|.+...-..+++..+...+.+. .|.+.+. .+......+.   +.......++
T Consensus        13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~   89 (152)
T TIGR01248        13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALV   89 (152)
T ss_pred             HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677777777776 899999999999999999888877777754 4877653 3332333332   3333344455


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC
Q 047475          141 MLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT  176 (233)
Q Consensus       141 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~  176 (233)
                      ..++...++.+. ......+..+....||.+.|.++
T Consensus        90 ~~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~  124 (152)
T TIGR01248        90 MAMALRKEGRFA-MEALELAQAAAAFLNPGATPIKL  124 (152)
T ss_pred             HHHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHh
Confidence            555555565544 44457777888888998888776

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.18  E-value=0.00092  Score=43.95  Aligned_cols=47  Identities=19%  Similarity=0.125  Sum_probs=39.9

Q ss_pred             ccHHHHHHhHhCCcccc--hhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047475          186 KTVAAFLKHCFGFDHDH--LAITAIVLAIYPIAFASLFASFIGRLNFQR  232 (233)
Q Consensus       186 ~~~~~~l~~~~~~~~~~--~~~~~~iL~~~~v~~~~l~~~~L~~~~~~k  232 (233)
                      .+.++.+++..|+..++  .|..+++|+|+.++|.++..++|.|++...
T Consensus        10 ~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~   58 (65)
T PF08370_consen   10 STLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG   58 (65)
T ss_pred             CcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            46677778899998775  567899999999999999999999997544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=97.11  E-value=0.023  Score=47.67  Aligned_cols=157  Identities=14%  Similarity=0.088  Sum_probs=86.4

Q ss_pred             hHHhhhccCC--------CChHHHHHHHHhhhhhHHH---HHHHHHhhh--hhc-ccccccchhHHHHHHHHHHHHHH--
Q 047475           71 VVYWERFAGM--------YSPLAYALGQIIAEVPYIF---FQTGIFIMV--TYP-MVEYYGSVYKIFCYFYMMLCSLL--  134 (233)
Q Consensus        71 v~~rE~~~g~--------Y~~~~y~la~~l~elp~~~---~~~~i~~~i--~Y~-~~gl~~~~~~f~~~~~~~~l~~~--  134 (233)
                      .+-+|+++|.        .++..++++|.+......+   +...+-..+  ... ..|.+.+...+...........+  
T Consensus        89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (277)
T PF12679_consen   89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV  168 (277)
T ss_pred             HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence            4467777776        5889999999999877632   211111111  111 12333344444443333333333  


Q ss_pred             -HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc---cCCC-Ceeec-C----CCcccHHHHHHhHhCCcc----
Q 047475          135 -YYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFI---LEPT-RKLRY-F----GETKTVAAFLKHCFGFDH----  200 (233)
Q Consensus       135 -~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i---~~~~-~~l~~-~----g~~~~~~~~l~~~~~~~~----  200 (233)
                       ...+++.++++..+|...|...+..+............   .... .+... +    -.+.+.-+...+ ...+.    
T Consensus       169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~  247 (277)
T PF12679_consen  169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPFNLLIG-SILGGGFVW  247 (277)
T ss_pred             HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHHHHHHH-Hhhccccch
Confidence             45889999999999988888877776655543333222   1111 11000 0    001111111111 11111    


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047475          201 DHLAITAIVLAIYPIAFASLFASFIGRL  228 (233)
Q Consensus       201 ~~~~~~~~iL~~~~v~~~~l~~~~L~~~  228 (233)
                      ...|.+.++++++.+++..+++...+++
T Consensus       248 ~~~~~~~~~~~~~~~v~l~la~~~F~rr  275 (277)
T PF12679_consen  248 LSTWPSLLILLAYTLVFLALAYYRFQRR  275 (277)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3578889999999999999999666543

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=97.00  E-value=0.031  Score=46.55  Aligned_cols=151  Identities=13%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             hhHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHH---HHhhhhhcccccc---cchhHHHHHHHHHHHHHHH
Q 047475           70 TVVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTG---IFIMVTYPMVEYY---GSVYKIFCYFYMMLCSLLY  135 (233)
Q Consensus        70 ~v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~---i~~~i~Y~~~gl~---~~~~~f~~~~~~~~l~~~~  135 (233)
                      ..+.|||++|+.        ++...+++|.+.-.-...+...   ++...... .|.+   .+.+.+...++..++....
T Consensus        71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  149 (240)
T TIGR03518        71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSV  149 (240)
T ss_pred             HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHH
Confidence            455788888885        6789999999887654433222   11111111 1221   2344555455555666677


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccC--CC--CeeecCCCcccHHHHHHhHhCCcccchhhHHHHHH
Q 047475          136 YNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILE--PT--RKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLA  211 (233)
Q Consensus       136 ~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~--~~--~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~iL~  211 (233)
                      ..++|.+++++.+|...|..++..+...+.+.-+...+.  ++  +.+    ...+..+...+ +. +..-.+.|+...+
T Consensus       150 ~~aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l----~~~sp~~~~~~-~~-~g~i~~~~~v~~~  223 (240)
T TIGR03518       150 YTAIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLASLLWGGSAYTI----SELGLSYHYES-IS-RGVIDSRDVIYFL  223 (240)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH----HHcCHHHHHHH-HH-cCcccHhHHHHHH
Confidence            789999999999998888665554433222211222111  11  000    00122111111 11 1111267888888


Q ss_pred             HHHHHHHHHHHHHHHh
Q 047475          212 IYPIAFASLFASFIGR  227 (233)
Q Consensus       212 ~~~v~~~~l~~~~L~~  227 (233)
                      .+++++..++...+++
T Consensus       224 ~~~~~~l~l~~~~~~~  239 (240)
T TIGR03518       224 SITVLFLALTKLQLKS  239 (240)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8888888887766653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=96.66  E-value=0.0005  Score=58.76  Aligned_cols=150  Identities=19%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             hhhhhhhhHHhhh--ccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc---cccchhHHHHHHHHHHHHHHHHHH
Q 047475           64 YVQTELTVVYWER--FAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE---YYGSVYKIFCYFYMMLCSLLYYNY  138 (233)
Q Consensus        64 ~f~~er~v~~rE~--~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g---l~~~~~~f~~~~~~~~l~~~~~~~  138 (233)
                      ...+||+-=.+||  .+|. ++..|.++|++......++..++...+   ..|   ++.  .++...++.+++..+...+
T Consensus       181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~  254 (344)
T PF12698_consen  181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFIS  254 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHH
Confidence            4455555444443  5554 889999999999998888887776664   344   432  3555556777778888889


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----Ceeec--CCCc-ccHHHHHHhHhCCcccchhhHHHHH
Q 047475          139 LGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----RKLRY--FGET-KTVAAFLKHCFGFDHDHLAITAIVL  210 (233)
Q Consensus       139 ~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----~~l~~--~g~~-~~~~~~l~~~~~~~~~~~~~~~~iL  210 (233)
                      ++.+++.++++...+..+.+++..+....+|...|.++     +.+.+  |... ..+-..+.  +|- ..+.|.+++++
T Consensus       255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~--~~~-~~~~~~~~~~l  331 (344)
T PF12698_consen  255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNII--YGD-WSEIWISLIIL  331 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHH--Hhc-HHHHHHHHHHH
Confidence            99999999999999988888887766666665555443     11111  1100 11111111  221 23567888889


Q ss_pred             HHHHHHHHHHHH
Q 047475          211 AIYPIAFASLFA  222 (233)
Q Consensus       211 ~~~~v~~~~l~~  222 (233)
                      ++..+++.+++.
T Consensus       332 ~~~~~v~~~l~~  343 (344)
T PF12698_consen  332 LLFAVVYLLLAI  343 (344)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHh
Confidence            888888887764

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=96.20  E-value=0.65  Score=39.32  Aligned_cols=141  Identities=9%  Similarity=0.067  Sum_probs=89.0

Q ss_pred             ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047475           82 SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYH  161 (233)
Q Consensus        82 ~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~  161 (233)
                      ++..+.+++++.++-...+..++.....-+..+.+  ..++......+.+..+.+.++|.+++.++.-..--..+...++
T Consensus       106 p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~  183 (263)
T COG1682         106 PPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQILGVVL  183 (263)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHH
Confidence            78899999999988777666655544444333332  3445555666777778888889999988866555566666777


Q ss_pred             HHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047475          162 TMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNF  230 (233)
Q Consensus       162 ~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~  230 (233)
                      -+.+..+|.+-|.+.           ||+.      ..-|-+.+-+=-+....+.+....+...++...+++...|+.+|
T Consensus       184 ~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~------~iie~~R~~~~~~~~~~~~~~~~~~~~~li~l~vg~~~~~~~~~  257 (263)
T COG1682         184 QLLFFLSPIIYPVSNLPEQLRELVLLNPLT------HIIESFRAPLLGGDVPDLHLLVYILLLTLILLFVGLLLFRKFRK  257 (263)
T ss_pred             HHHHHhCceeeehhhccHHHHHHHHHCcHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            778888888777666           3331      11111111110012224556777777777777888888876554

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=95.92  E-value=0.16  Score=41.56  Aligned_cols=133  Identities=16%  Similarity=0.075  Sum_probs=76.3

Q ss_pred             hhHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 047475           70 TVVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGM  141 (233)
Q Consensus        70 ~v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~  141 (233)
                      ..|.+|+++|..        ++...+++|.+...-...+...+..-+...+.|.+.  .+...+.+.+.+-...-...|-
T Consensus        66 r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igt  143 (215)
T PF03379_consen   66 RSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGT  143 (215)
T ss_pred             HhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHH
Confidence            347888888872        467889999999877665555444444444556543  3445555555555555556666


Q ss_pred             HHHHhcCChHHHHHHHHHH----HHHHHHhhcccccCCCCeeecCCCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHH
Q 047475          142 LLMLLTPNYMVAAILSSAY----HTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAF  217 (233)
Q Consensus       142 ~i~~~~~~~~~a~~~~~~~----~~~~~lf~G~~i~~~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~  217 (233)
                      +.+++.-+......+.+++    .+|.++++-                 ...+...     +..+.+.....+.++.+++
T Consensus       144 l~aal~~~~r~~~~Ll~lL~lPl~iPvli~~~-----------------~~t~~~~-----~g~~~~~~l~lL~a~~~~~  201 (215)
T PF03379_consen  144 LLAALAAGARGREILLPLLLLPLLIPVLIFAV-----------------QATTAAL-----TGLDFWGWLALLGAYDLIF  201 (215)
T ss_pred             HHHHHHHhccccCHHHHHHHHHHHHHHHHHHH-----------------HHHHHHh-----cCCChHHHHHHHHHHHHHH
Confidence            6666654333333333333    344444432                 1111111     1145666777888888888


Q ss_pred             HHHHHHHHH
Q 047475          218 ASLFASFIG  226 (233)
Q Consensus       218 ~~l~~~~L~  226 (233)
                      ..++.+...
T Consensus       202 ~~l~~~~~~  210 (215)
T PF03379_consen  202 LALSPFLFA  210 (215)
T ss_pred             HHHHHHHHH
Confidence            777766544

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=95.24  E-value=1.6  Score=36.89  Aligned_cols=99  Identities=10%  Similarity=0.017  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHhHhC
Q 047475          129 MLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKHCFG  197 (233)
Q Consensus       129 ~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~~~~  197 (233)
                      ..+..+.+.++|.+++++..-..-...+.+.++.+.+..+|.+-+.+.           ||+.      ..-|...+.+=
T Consensus       155 ~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~------~~ie~~R~~~~  228 (264)
T PRK15176        155 MVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLL------HANEIVREGMF  228 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHH------HHHHHHHHHHh
Confidence            344556666777777776643333444555666677777886655443           3331      11111111111


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475          198 FDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR  233 (233)
Q Consensus       198 ~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr  233 (233)
                      -+....+.+....+++.++..++++...|+.|.++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  264 (264)
T PRK15176        229 EGYHSLYLEPFYPLAFSATLFLAGLIFHLICDTENH  264 (264)
T ss_pred             cCcCccccChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            011223456688888999999999999998888765

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=95.13  E-value=0.9  Score=38.16  Aligned_cols=159  Identities=15%  Similarity=0.134  Sum_probs=95.8

Q ss_pred             hhHHhhhccCC--------CChHHHHHHHHhhhhhHHHHHHHHHh---hhhhccccccc---chhHHHHHHHHHHHHHHH
Q 047475           70 TVVYWERFAGM--------YSPLAYALGQIIAEVPYIFFQTGIFI---MVTYPMVEYYG---SVYKIFCYFYMMLCSLLY  135 (233)
Q Consensus        70 ~v~~rE~~~g~--------Y~~~~y~la~~l~elp~~~~~~~i~~---~i~Y~~~gl~~---~~~~f~~~~~~~~l~~~~  135 (233)
                      .++-+|+++|+        .++.--+.+|.+.-+-...+..++..   ...+...|...   +..+...+.....+....
T Consensus        81 ~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (278)
T COG1277          81 DLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLV  160 (278)
T ss_pred             chhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence            45578888888        46778888998887665544444433   11222333333   333556666677777888


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC----------CeeecCCCcccHHHHHHhHhC--------
Q 047475          136 YNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT----------RKLRYFGETKTVAAFLKHCFG--------  197 (233)
Q Consensus       136 ~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~----------~~l~~~g~~~~~~~~l~~~~~--------  197 (233)
                      -.+.+.+++...++...+..++..+.....+..+.......          +.+..........+.....++        
T Consensus       161 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (278)
T COG1277         161 LLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAELAFTILLQSGFSDSI  240 (278)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHHHHHhhhhcccccccccc
Confidence            88899999999999988888888777666655544332100          001110000000010001111        


Q ss_pred             --C--cccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047475          198 --F--DHDHLAITAIVLAIYPIAFASLFASFIGRL  228 (233)
Q Consensus       198 --~--~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~  228 (233)
                        .  .....|.+..++.++.+.+..++++..+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~  275 (278)
T COG1277         241 LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRR  275 (278)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence              1  123577889999999999999998887654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=94.36  E-value=1.8  Score=46.89  Aligned_cols=104  Identities=13%  Similarity=0.041  Sum_probs=72.0

Q ss_pred             hccchhhhhhhhHHhhhc--cCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 047475           60 LVLPYVQTELTVVYWERF--AGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYN  137 (233)
Q Consensus        60 ~~~~~f~~er~v~~rE~~--~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~  137 (233)
                      .++.....||..-.||.-  -|+ +.+.|.+|.++..+...++.+++.+++... ..+ -..++++..++.++++.+...
T Consensus       669 ~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~~-~~~-~~~s~~~~lfl~~~~y~~s~I  745 (2272)
T TIGR01257       669 MTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIMH-GRI-LHYSDPFILFLFLLAFSTATI  745 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-Cce-eecCChHHHHHHHHHHHHHHH
Confidence            344677888888888844  344 678888999888876666555444443221 111 122344555666777788888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 047475          138 YLGMLLMLLTPNYMVAAILSSAYHTMLNL  166 (233)
Q Consensus       138 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l  166 (233)
                      .++.++++++.+...|..+++++.....+
T Consensus       746 ~~~fliS~fFska~~A~~~~~li~f~~~l  774 (2272)
T TIGR01257       746 MQCFLLSTFFSKASLAAACSGVIYFTLYL  774 (2272)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888766544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01190 ccmB heme exporter protein CcmB

Probab=93.59  E-value=1.9  Score=35.23  Aligned_cols=79  Identities=10%  Similarity=-0.064  Sum_probs=46.5

Q ss_pred             hhhHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 047475           69 LTVVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLG  140 (233)
Q Consensus        69 r~v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g  140 (233)
                      ...|.+|+++|..        +....+++|.+...-...+.-.+..-..-.+.|++.  .......+.+.+-...-...|
T Consensus        62 ~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~ig  139 (211)
T TIGR01190        62 DRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLG  139 (211)
T ss_pred             hHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999973        668889999988765544433333333333455543  333444555555555555566


Q ss_pred             HHHHHhcCC
Q 047475          141 MLLMLLTPN  149 (233)
Q Consensus       141 ~~i~~~~~~  149 (233)
                      -+.+++.-+
T Consensus       140 tl~aALt~g  148 (211)
T TIGR01190       140 AIGAALTVG  148 (211)
T ss_pred             HHHHHHHHh
Confidence            666666543

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=92.63  E-value=2.6  Score=45.72  Aligned_cols=97  Identities=13%  Similarity=0.056  Sum_probs=70.7

Q ss_pred             chhhhhhhhHHh--hhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhccc--ccccchhHHHHHHHHHHHHHHHHHH
Q 047475           63 PYVQTELTVVYW--ERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMV--EYYGSVYKIFCYFYMMLCSLLYYNY  138 (233)
Q Consensus        63 ~~f~~er~v~~r--E~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~--gl~~~~~~f~~~~~~~~l~~~~~~~  138 (233)
                      .....||.-=.|  +.-+|. +..+|-+++.+.|+...++..+++..+++..-  ++. +...+...+++++++.+...-
T Consensus      1699 ~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip 1776 (2272)
T TIGR01257      1699 LYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIP 1776 (2272)
T ss_pred             eeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHH
Confidence            345566665544  466777 88999999999999998888777776655321  122 334566666778888899999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHH
Q 047475          139 LGMLLMLLTPNYMVAAILSSAYH  161 (233)
Q Consensus       139 ~g~~i~~~~~~~~~a~~~~~~~~  161 (233)
                      +.++++.+++++..|......+.
T Consensus      1777 ~tYl~SflF~~~~~A~~~~~~in 1799 (2272)
T TIGR01257      1777 MMYPASFLFDVPSTAYVALSCAN 1799 (2272)
T ss_pred             HHHHHHHhhCCchhHHHHHHHHH
Confidence            99999999999998876655443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=90.58  E-value=4.8  Score=31.61  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             hHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhh---hcccccc-cchh---HHH-HHHHHHHHHHH
Q 047475           71 VVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVT---YPMVEYY-GSVY---KIF-CYFYMMLCSLL  134 (233)
Q Consensus        71 v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~---Y~~~gl~-~~~~---~f~-~~~~~~~l~~~  134 (233)
                      .+.+|+++|++        ++..++.+|.++..-...+..++...+.   ..+.+.. .+..   +.. .+.+.......
T Consensus        69 ~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (232)
T PF12730_consen   69 LFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSL  148 (232)
T ss_pred             HHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHH
Confidence            44577777763        7899999999998777655554433332   2233321 1222   222 23333334444


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 047475          135 YYNYLGMLLMLLTPNYMVAAILSSAYHTMLNL  166 (233)
Q Consensus       135 ~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l  166 (233)
                      ....+ .+++...+|...+..+.........+
T Consensus       149 ~~~~~-~~i~~~~~~~~~~i~~~~~~~~~~~~  179 (232)
T PF12730_consen  149 FISLL-LFISSLFRNSIVAIIISILLFLLGII  179 (232)
T ss_pred             HHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            44455 78888888877665554444443333

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00