Citrus Sinensis ID: 047480
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | 2.2.26 [Sep-21-2011] | |||||||
| O82380 | 738 | Pentatricopeptide repeat- | yes | no | 0.981 | 0.956 | 0.391 | 1e-156 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.931 | 0.904 | 0.388 | 1e-149 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.977 | 0.973 | 0.384 | 1e-144 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.904 | 0.948 | 0.391 | 1e-143 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.956 | 0.817 | 0.382 | 1e-139 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.934 | 0.816 | 0.372 | 1e-139 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.926 | 0.959 | 0.354 | 1e-134 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.831 | 0.878 | 0.408 | 1e-133 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.872 | 0.912 | 0.369 | 1e-133 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.952 | 0.789 | 0.345 | 1e-133 |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 554 bits (1427), Expect = e-156, Method: Compositional matrix adjust.
Identities = 281/717 (39%), Positives = 447/717 (62%), Gaps = 11/717 (1%)
Query: 7 EHSSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILF 65
E S ++L+E C SL+Q Q HG ++ +G + S+S+L + ALS + L +R +F
Sbjct: 29 ERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFAS-LEYARKVF 87
Query: 66 SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
+I PN F WNTL+R Y+ P ++ + M+S+ PN +TFPF++ + A +SS
Sbjct: 88 DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
G +H +K + D+F+ N+LIH Y G +++A KVF +D+VS+N++ING+
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207
Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
Q P AL LF+KM+ ++ T V + SAC ++ + G+Q + + +N V
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR--VNV 265
Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
N+ L A+++MY KCG + A+R+F M K W++M+ GY E AR++ + M
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAAREVLNSM 324
Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDFG 364
Q+D+V+W A+IS Y Q G ++AL +F +++ + +++T+V+ L AC +GAL+ G
Sbjct: 325 PQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG 384
Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
+ +H YI+ N +T+A+I MY+KCG ++ + VF + K + V +++++I GL
Sbjct: 385 RWIHS-YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK--RDVFVWSAMIGGL 441
Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQ 483
A HG G ++ +F +M+ +KP+GVTF V CACSH GLV+E + F M NYGI P+
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPE 501
Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
+HY C+VD+L R G L++A I++MP ++ +W ALL AC++H N + E+A +LL
Sbjct: 502 EKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLL 561
Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
+LEP + +VLLSN+ A+ +WE ++RK M +G++K PG S IE +G +H FL+
Sbjct: 562 ELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD 621
Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLI 662
+HP ++++ L ++ KLKS GY P QV+ ++EEE KE ++ HSEKLA+ +GLI
Sbjct: 622 NAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLI 681
Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
++ + + IR+ KNLR+CGDCH KL+S++Y REI+VRD RFH F+ G CSC DFW
Sbjct: 682 STEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/743 (38%), Positives = 440/743 (59%), Gaps = 73/743 (9%)
Query: 12 LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
L+LL +CK+L+ IH Q++ GL N + + S+LI F LS GL + +F I
Sbjct: 37 LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96
Query: 71 PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
PN+ IWNT+ RG++ S P AL LY M+S G++ PN++TFPFVL SCA+ +FK G Q
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLKSCAKSKAFKEGQQ 155
Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY------------ 178
IH H++K G + DL++ +LI Y G + +AHKVF+ S RD+VSY
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215
Query: 179 -------------------NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
N +I+GYA+ AL LF+ M + ++PD T V + SA
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275
Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
C + +G+Q H ++ + GSN+ + A+I++Y+KCG
Sbjct: 276 CAQSGSIELGRQVH--LWIDDHGFGSNLKIVNALIDLYSKCG------------------ 315
Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
++E A LF+++ +D++SW +I GY+ + + +AL LF +M
Sbjct: 316 --------------ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361
Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSI 397
G P++VTM+++L AC LGA+D G+ +H YI+ + G L T++IDMYAKCG I
Sbjct: 362 GETPNDVTMLSILPACAHLGAIDIGRWIHV-YIDKRLKGVTNASSLRTSLIDMYAKCGDI 420
Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
+ A VF I K++S +N++I G A HG + S +F M +G++PD +TFV +L
Sbjct: 421 EAAHQVFNSILH--KSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLS 478
Query: 458 ACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
ACSH G+++ G+ F +M +Y + P++EHYGCM+DLL G EA +I M + +
Sbjct: 479 ACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG 538
Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
VIW +LL AC++H N ++GE + L+ +EP++ YVLLSN+ A RW E + R L+
Sbjct: 539 VIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALL 598
Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
+D G++K PG S IE + +H F+ K HP+ +EI ML++M + L+ AG+VP+T +V+
Sbjct: 599 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVL 658
Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
+++EE KE + +HSEKLA+AFGLI+++ + I KNLR+C +CH A KL+S+IY+RE
Sbjct: 659 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 718
Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
I+ RD RFH F+ G CSC D+W
Sbjct: 719 IIARDRTRFHHFRDGVCSCNDYW 741
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/718 (38%), Positives = 422/718 (58%), Gaps = 15/718 (2%)
Query: 9 SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
+++L L CKSL Q+H I+ + +NH ++S L + S N + + S
Sbjct: 13 NTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF-LFNLSVSSSSINLSYALNVFSSIP 71
Query: 69 DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
P ++N +R SRS P+ ++ Y + G + F+F +L + +++S+ G
Sbjct: 72 SPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVG-GRLDQFSFLPILKAVSKVSALFEG 130
Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
++H K D F+ + Y+ G IN A VF+ RD+V++NT+I Y +
Sbjct: 131 MELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRF 190
Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
A LF +M+DS + PD + SAC + R + + + +N + +++L
Sbjct: 191 GLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLL 250
Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
TA++ MYA G M+MA F M + ++ ++M+SGY++ G+++ A+ +FDQ +++
Sbjct: 251 --TALVTMYAGAGCMDMAREFFRKMSV-RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKK 307
Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
DLV WT MIS Y + +AL +F +M GI PD V+M +V+ AC LG LD K +H
Sbjct: 308 DLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVH 367
Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
N + + + A+I+MYAKCG +D VF K+P+ + V ++S+I+ L+ HG
Sbjct: 368 SCIHVNGL-ESELSINNALINMYAKCGGLDATRDVFEKMPR--RNVVSWSSMINALSMHG 424
Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
++++F M+ ++P+ VTFV VL CSH GLVEEGK+ F SM + Y I P++EHY
Sbjct: 425 EASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHY 484
Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
GCMVDL R L EA +I+SMP +N VIW +L++ACR+H ++G+ A +++L+LEP
Sbjct: 485 GCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEP 544
Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
DH VL+SN+ A RWE+ R +R++M++ + K G S I+ NG H FL K H
Sbjct: 545 DHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHK 604
Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
Q+ EI L ++ KLK AGYVP+ V+ DV+EEEK+ +V +HSEKLAL FGL+N +
Sbjct: 605 QSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKE 664
Query: 668 E------TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
E IRI KNLR+C DCHL FKL+S++Y REI+VRD RFH +K G CSC D+W
Sbjct: 665 EEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 272/695 (39%), Positives = 410/695 (58%), Gaps = 45/695 (6%)
Query: 30 QIVHSGLNHHISSSQLISFFALSGCKNGLFR----SRILFSQIDNPNIFIWNTLMRGYSR 85
QI S +NHH+ + L + FR S +LFS PNIF++N+L+ G+
Sbjct: 31 QIHVSLINHHLHHDTFLVNLLLK--RTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVN 88
Query: 86 SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
+ E L L+ S+ G+ + FTFP VL +C R SS K G +H ++K G D+
Sbjct: 89 NHLFHETLDLFLSIRKHGLY-LHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVA 147
Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
+L+ YS G +N+AHK+F+ R +V++ L +GY A+ LF+KM +
Sbjct: 148 AMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMG 207
Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
++PD++ V + SAC + D G+ V Y + N ++T ++N+YAKC
Sbjct: 208 VKPDSYFIVQVLSACVHVGDLDSGEWI--VKYMEEMEMQKNSFVRTTLVNLYAKC----- 260
Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
GK+E+AR +FD M ++D+V+W+ MI GY+
Sbjct: 261 ---------------------------GKMEKARSVFDSMVEKDIVTWSTMIQGYASNSF 293
Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
+ +ELF +M + PD+ ++V L +C LGALD G+ I+ F N+F+
Sbjct: 294 PKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE-WGISLIDRHEFLTNLFMAN 352
Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
A+IDMYAKCG++ VF ++ + K + + N+ ISGLA++G + S AVF + E +G+
Sbjct: 353 ALIDMYAKCGAMARGFEVFKEMKE--KDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGI 410
Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
PDG TF+ +LC C H GL+++G +FF ++ Y +K +EHYGCMVDL R G LD+AY
Sbjct: 411 SPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAY 470
Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
LI MP N+++W ALL+ CRL ++ ++ E ++L+ LEP + +YV LSN+ +
Sbjct: 471 RLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGG 530
Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
RW+EA +VR +M+ G++K PG+S+IE G +H FLA KSHP + +I L+D+ +++
Sbjct: 531 RWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMR 590
Query: 625 SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
G+VP T V FDV+EEEKE V+ YHSEKLA+A GLI++ + IR+ KNLR+CGDCH
Sbjct: 591 LMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHE 650
Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
KL+S+I RREI+VRD RFH F G+CSC D+W
Sbjct: 651 VMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/700 (38%), Positives = 419/700 (59%), Gaps = 12/700 (1%)
Query: 23 QALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
+QIHG IV G + + L+ F+A G L +R +F ++ N+ W +++
Sbjct: 152 NGIQIHGLIVKMGYAKDLFVQNSLVHFYAECG---ELDSARKVFDEMSERNVVSWTSMIC 208
Query: 82 GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
GY+R D ++A+ L+ M+ V+PN+ T V+++CA+L ++G +++ I G+E
Sbjct: 209 GYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE 268
Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
+ + +AL+ Y I+ A ++F+ A +L N + + Y + AL +F M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328
Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
DS ++PD + ++ S+C++L + GK H V +N N+ A+I+MY KC
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC--NALIDMYMKCH 386
Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
+ A R+F M +K+ W+S+++GY G+++ A + F+ M ++++VSW +ISG
Sbjct: 387 RQDTAFRIFDRMS-NKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV 445
Query: 322 QVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
Q F +A+E+F M+S G++ D VTM+++ AC LGALD K ++ YIE +
Sbjct: 446 QGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY-YIEKNGIQLD 504
Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
+ L T ++DM+++CG ++A+S+F + + VS + + I +A G E +I +F +M
Sbjct: 505 VRLGTTLVDMFSRCGDPESAMSIFNSLTN--RDVSAWTAAIGAMAMAGNAERAIELFDDM 562
Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGR 499
GLKPDGV FV L ACSHGGLV++GK+ F SML +G+ P+ HYGCMVDLL R G
Sbjct: 563 IEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGL 622
Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
L+EA LI+ MP + N VIW +LLAACR+ N ++ A +K+ L P+ YVLLSN+
Sbjct: 623 LEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNV 682
Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
A RW + +VR M + G++KPPG S I+ G H F + +SHP+ IE ML ++
Sbjct: 683 YASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEV 742
Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
+ + G+VP+ V+ DVDE+EK ++S HSEKLA+A+GLI+S TIRI KNLR+C
Sbjct: 743 SQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVC 802
Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
DCH K S++Y REI++RD RFH ++G CSC DFW
Sbjct: 803 SDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/719 (37%), Positives = 428/719 (59%), Gaps = 47/719 (6%)
Query: 4 LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
L ++ + ++L++C+++ +IH + G + ++ LI ++ + +R
Sbjct: 149 LTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSR---YKAVGNAR 205
Query: 63 ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
ILF ++ ++ WN ++ GY +S + +EAL L S G+ + ++ T +L++C
Sbjct: 206 ILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEA 260
Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
F G IH + IK GLE +LF+ N LI Y+ FG + + KVF+ RDL+S+N++I
Sbjct: 261 GDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSII 320
Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
Y ++P A+ LF++M+ S IQPD T +++ S ++L D R + + G
Sbjct: 321 KAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK-GW 379
Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
++ + AV+ MYAK GL ++ AR +F
Sbjct: 380 FLEDITIGNAVVVMYAKLGL--------------------------------VDSARAVF 407
Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGAL 361
+ + D++SW +ISGY+Q G S+A+E++ ME G I ++ T V+VL AC GAL
Sbjct: 408 NWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGAL 467
Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
G +LH + ++N ++ ++F+ T++ DMY KCG ++ ALS+FY+IP+ + +V +N++I
Sbjct: 468 RQGMKLHGRLLKNGLY-LDVFVVTSLADMYGKCGRLEDALSLFYQIPR-VNSVP-WNTLI 524
Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
+ HG GE ++ +F+EM G+KPD +TFVT+L ACSH GLV+EG+ FE M +YGI
Sbjct: 525 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 584
Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
P ++HYGCMVD+ R G+L+ A I+SM ++ IW ALL+ACR+H N +G+IA +
Sbjct: 585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644
Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
L ++EP+H ++VLLSNM A +WE ++R + G++K PGWS +E + + F
Sbjct: 645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFY 704
Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
++HP +E+ L + KLK GYVP+ V+ DV+++EKE ++ HSE+LA+AF
Sbjct: 705 TGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFA 764
Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
LI + +K TIRI KNLR+CGDCH K +S+I REI+VRD+ RFH FK G CSC D+W
Sbjct: 765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 480 bits (1236), Expect = e-134, Method: Compositional matrix adjust.
Identities = 252/710 (35%), Positives = 416/710 (58%), Gaps = 44/710 (6%)
Query: 13 ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
+L++S Q QIH +++ GL S + S + +R +F + P
Sbjct: 26 SLIDSATHKAQLKQIHARLLVLGL--QFSGFLITKLIHASSSFGDITFARQVFDDLPRPQ 83
Query: 73 IFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
IF WN ++RGYSR++ Q+AL++Y++M L++ VSP++FTFP +L +C+ LS + G +
Sbjct: 84 IFPWNAIIRGYSRNNHFQDALLMYSNMQLAR--VSPDSFTFPHLLKACSGLSHLQMGRFV 141
Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVK 189
H + + G + D+F++N LI Y+ + +A VFEG R +VS+ +++ YAQ
Sbjct: 142 HAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNG 201
Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
EP AL +F +M+ ++PD V++ +A T L D + G+ HA V K + ++L+
Sbjct: 202 EPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI 261
Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
++ MYAKCG ++ A+ LFD+M +
Sbjct: 262 --SLNTMYAKCG--------------------------------QVATAKILFDKMKSPN 287
Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
L+ W AMISGY++ G +A+++F +M + + PD +++ + + AC +G+L+ + +++
Sbjct: 288 LILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE 347
Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
Y+ + ++F+++A+IDM+AKCGS++ A VF + + V +++++I G HG
Sbjct: 348 -YVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLD--RDVVVWSAMIVGYGLHGR 404
Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
+I+++R ME G+ P+ VTF+ +L AC+H G+V EG FF M ++ I PQ +HY C
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYAC 464
Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
++DLL R G LD+AY +I+ MP +W ALL+AC+ HR+ ++GE A Q+L ++P +
Sbjct: 465 VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524
Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
HYV LSN+ A W+ +VR M + G+ K G S++E G L F KSHP+
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584
Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
+EIE ++ + +LK G+V N + D+++EE E + HSE++A+A+GLI++
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTP 644
Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
+RITKNLR C +CH A KL+S++ REI+VRD RFH FK G CSC D+W
Sbjct: 645 LRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/609 (40%), Positives = 381/609 (62%), Gaps = 11/609 (1%)
Query: 8 HSSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFS 66
H+ LL+LLE CK L QI Q++ +GL +SS+LI+F ALS + + +IL
Sbjct: 53 HNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL-K 111
Query: 67 QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS--PNNFTFPFVLNSCARLSS 124
I+NPNIF WN +RG+S S++P+E+ +LY ML G P++FT+P + CA L
Sbjct: 112 GIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRL 171
Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
G I H++K LE + NA IH ++ G + NA KVF+ S RDLVS+N LING
Sbjct: 172 SSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLING 231
Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
Y ++ E A+++++ M+ ++PD T + + S+C+ L D GK+F+ V +N +
Sbjct: 232 YKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN--GLR 289
Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
+ L A+++M++KCG ++ A R+F + ++ +W++MISGY R G ++ +R+LFD
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLE-KRTIVSWTTMISGYARCGLLDVSRKLFDD 348
Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
M+++D+V W AMI G Q AL LF +M++ PDE+TM+ L AC LGALD G
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVG 408
Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
+H+ YIE N+ L T+++DMYAKCG+I ALSVF+ I + + +II GL
Sbjct: 409 IWIHR-YIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGI--QTRNSLTYTAIIGGL 465
Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
A HG T+I+ F EM G+ PD +TF+ +L AC HGG+++ G+ +F M + + + PQ
Sbjct: 466 ALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQ 525
Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
++HY MVDLL R G L+EA L++SMP +A++ +W ALL CR+H N ++GE A +KLL
Sbjct: 526 LKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLL 585
Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
+L+P YVLL M E WE+A++ R++M++ G++K PG S IE NG + F+
Sbjct: 586 ELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRD 645
Query: 604 KSHPQTKEI 612
KS P++++I
Sbjct: 646 KSRPESEKI 654
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/638 (36%), Positives = 405/638 (63%), Gaps = 11/638 (1%)
Query: 7 EHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFS 66
++S +++L CK+ Q Q+H Q + G+ + + + + F S + + LF
Sbjct: 33 DYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFV 92
Query: 67 QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS-SF 125
+I P++ +WN +++G+S+ D E + LY +ML +G V+P++ TFPF+LN R +
Sbjct: 93 KIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEG-VTPDSHTFPFLLNGLKRDGGAL 151
Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
G ++HCH++KFGL +L+++NAL+ YS+ G ++ A VF+ D+ S+N +I+GY
Sbjct: 152 ACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211
Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VG 244
++KE ++ L +M+ + + P + T + + SAC+++ D + K+ H V + C
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE---CKTE 268
Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
++ L+ A++N YA CG M++A R+F +M ++ +W+S++ GY G ++ AR FDQ
Sbjct: 269 PSLRLENALVNAYAACGEMDIAVRIFRSMK-ARDVISWTSIVKGYVERGNLKLARTYFDQ 327
Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
M RD +SWT MI GY + G F+++LE+F +M+S G+ PDE TMV+VL AC LG+L+ G
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387
Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
+ + + YI+ ++ + A+IDMY KCG + A VF+ + + K + +++ GL
Sbjct: 388 EWI-KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT--WTAMVVGL 444
Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
A +G G+ +I VF +M+ M ++PD +T++ VL AC+H G+V++ ++FF M ++ I+P
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504
Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
+ HYGCMVD+L R G + EAY +++ MP + NS++W ALL A RLH + + E+A +K+L
Sbjct: 505 LVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564
Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
+LEPD+GA Y LL N+ A RW++ R+VR+ + D I+K PG+S IE NG H F+A
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624
Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
KSH Q++EI + L+++ + A Y+P+T +++F+ +
Sbjct: 625 KSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGD 662
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 474 bits (1220), Expect = e-133, Method: Compositional matrix adjust.
Identities = 264/764 (34%), Positives = 432/764 (56%), Gaps = 79/764 (10%)
Query: 26 QIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
Q+H Q + G +S +S + ++ S K+G R +F ++ N+ W TL+ GY
Sbjct: 114 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDG----RKVFDEMKERNVVTWTTLISGY 169
Query: 84 SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
+R+ E L L+ M ++G PN+FTF L A G Q+H ++K GL+
Sbjct: 170 ARNSMNDEVLTLFMRMQNEG-TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT 228
Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
+ + N+LI+ Y G + A +F+ + + +V++N++I+GYA AL +F M+
Sbjct: 229 IPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 288
Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV--------------------------- 236
+ ++ +F ++ C L + R +Q H V
Sbjct: 289 NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLD 348
Query: 237 ----YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM------------------- 273
+K +GCVG N++ TA+I+ + + A +FS M
Sbjct: 349 ALRLFKEIGCVG-NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407
Query: 274 ---------------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
+S+ ++++ Y + GK+E A ++F +D +D+V+W+AM++
Sbjct: 408 PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467
Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA-LDFGKRLHQQYIENVVF 377
GY+Q G A+++FG++ GI P+E T ++L C A + GK+ H I++ +
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRL- 526
Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
++ +++A++ MYAK G+I++A VF + + K + +NS+ISG AQHG ++ VF
Sbjct: 527 DSSLCVSSALLTMYAKKGNIESAEEVFKR--QREKDLVSWNSMISGYAQHGQAMKALDVF 584
Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLAR 496
+EM+ +K DGVTF+ V AC+H GLVEEG+++F+ M+ + I P EH CMVDL +R
Sbjct: 585 KEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSR 644
Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
G+L++A +I++MP A S IWR +LAACR+H+ ++G +A +K++ ++P+ A YVLL
Sbjct: 645 AGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLL 704
Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
SNM AE+ W+E +VRKLM++ ++K PG+S+IE + FLA +SHP +I + L
Sbjct: 705 SNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKL 764
Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
+D++ +LK GY P+T V+ D+D+E KE V++ HSE+LA+AFGLI + + I KNL
Sbjct: 765 EDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNL 824
Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK-GNCSCMDFW 719
R+CGDCHL KL+++I REI+VRD+ RFH F G CSC DFW
Sbjct: 825 RVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | ||||||
| 225441187 | 722 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.994 | 0.693 | 0.0 | |
| 356545987 | 613 | PREDICTED: pentatricopeptide repeat-cont | 0.830 | 0.973 | 0.522 | 0.0 | |
| 357517181 | 633 | Pentatricopeptide repeat-containing prot | 0.855 | 0.971 | 0.512 | 0.0 | |
| 297739965 | 538 | unnamed protein product [Vitis vinifera] | 0.699 | 0.934 | 0.589 | 1e-179 | |
| 449436619 | 723 | PREDICTED: putative pentatricopeptide re | 0.976 | 0.970 | 0.445 | 1e-179 | |
| 449491161 | 744 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.976 | 0.943 | 0.445 | 1e-179 | |
| 225442904 | 724 | PREDICTED: putative pentatricopeptide re | 0.977 | 0.970 | 0.438 | 1e-178 | |
| 356528966 | 712 | PREDICTED: putative pentatricopeptide re | 0.977 | 0.987 | 0.431 | 1e-171 | |
| 225434622 | 743 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.942 | 0.426 | 1e-165 | |
| 225423499 | 738 | PREDICTED: pentatricopeptide repeat-cont | 0.940 | 0.915 | 0.418 | 1e-164 |
| >gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/720 (69%), Positives = 594/720 (82%), Gaps = 2/720 (0%)
Query: 2 KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFR 60
KR +LE+ S L LLESCKS KQ LQIH Q + +GL+H I S S+LISFF+L G K+GL
Sbjct: 3 KRFLLENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDH 62
Query: 61 SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
SR+LFSQID PN+F+WNT++RGYSRSD+P+EA+VLY SM++KGI PNNFTFPF+LNSCA
Sbjct: 63 SRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCA 122
Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
RLSS + G ++H HIIK G E DLF+RNALIH YS+FG +N A +F+ SL RDLVSYNT
Sbjct: 123 RLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNT 182
Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
+I GYA+V +P AL LF +MQ+S I PD FTFVA+FS C+ LN+P +GKQ HA VYKNL
Sbjct: 183 MIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNL 242
Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
+ SN+LLK+A+++MYAKCGL+N+AERVFSTMG SKS AAWSSM+ GY R G+I AR+
Sbjct: 243 RSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARK 302
Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
LF+ M +RD++SWTAMISGYSQ G S+ALELF +ME+LGI PDEVT+VAVL AC LGA
Sbjct: 303 LFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGA 362
Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
D GKRL+ QYIEN VF +N LT AV+DMYAKCGSID+AL +F ++ KN+KT +FNS+
Sbjct: 363 FDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSM 422
Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
I+GLAQHGLGET+I VFRE+ GLKPD VTFV VLCAC H GL+EEGK+ FESM N YG
Sbjct: 423 IAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG 482
Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
IKPQMEHYGCMVDLL R G L+EAY L+Q MP++ANSVIWRALL+ACR H N KIGEIAG
Sbjct: 483 IKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAG 542
Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
QKLL++E HGA YVLLSN+LA+ +WEEARQVRK+M+D GI+KPPGWSYIE G +HRF
Sbjct: 543 QKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRF 602
Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
+AS KSHPQ KEIELMLKDM M+LKSAGYVPNT QV+FD+DEEEKE+VVSYHSEKLALAF
Sbjct: 603 VASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAF 662
Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
GL+ +TIRI KNLRIC DCH AFKL+SEIY REI VRD +RFH F+ G+CSCMDFW
Sbjct: 663 GLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/601 (52%), Positives = 424/601 (70%), Gaps = 4/601 (0%)
Query: 43 SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
+ LISFFA + N L S +LF+QI NP++F++N ++R +S S +P AL LY MLS
Sbjct: 14 TPLISFFAAAN-SNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSS 72
Query: 103 GI-VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
+ P+ FTFPF+L SCA+LS + G Q+H H+ K G E ++F+ NAL+ Y +FG
Sbjct: 73 SPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDAR 132
Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
NA +VF+ S RD VSYNT+ING + ++ +F +M+ ++PD +TFVA+ SAC+
Sbjct: 133 NACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACS 192
Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
L D IG+ H +VY+ LGC G N LL A+++MYAKCG + +AERV AA
Sbjct: 193 LLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAA 252
Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
W+S++S Y G++E AR+LFDQM +RD+VSWTAMISGY G F +ALELF ++E LG+
Sbjct: 253 WTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGM 312
Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV-VFGRNIFLTTAVIDMYAKCGSIDTA 400
PDEV +VA L AC LGAL+ G+R+H +Y + G N T AV+DMYAKCGSI+ A
Sbjct: 313 EPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAA 372
Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
L VF K ++KT L+NSI+SGLA HG GE ++A+F EM L+GL+PD VT+V +LCAC
Sbjct: 373 LDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACG 432
Query: 461 HGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
H GLV+ GK+ FESML+ YG+ PQMEHYGCMVDLL R G L+EAY LIQ+MP+ AN+VIW
Sbjct: 433 HSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIW 492
Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
RALL+AC++ + ++ +A Q+LL +E DHGA YV+LSNML + +EA VR+ +D+
Sbjct: 493 RALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAASVRRAIDNV 552
Query: 580 GIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV 639
GIQKPPGWS++E NGTLH+FLA KSHP+ K E ML+D+ M LKS G+ + ++VFDV
Sbjct: 553 GIQKPPGWSHVEMNGTLHKFLAGDKSHPEAKATEFMLRDIDMGLKSIGHSISVSKMVFDV 612
Query: 640 D 640
D
Sbjct: 613 D 613
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/623 (51%), Positives = 444/623 (71%), Gaps = 8/623 (1%)
Query: 6 LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRIL 64
L + + +LL SCK+++QA QI+ I+ +G ++++ S+ L +F+A S L S L
Sbjct: 12 LSNERIKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTL 71
Query: 65 FSQIDNPNIFIWNTLMRGYSRSDSP-QEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR-- 121
F+QI NP+IF+WN +++ YS+ SP Q L+ +ML+ ++ P++FTFPF+L +CA
Sbjct: 72 FTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVL-PDSFTFPFLLKACANVL 130
Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
+S+ + G Q+HCH+++ G D+F+ NAL++FY FG + NA+KVF+ S RD VS+NT+
Sbjct: 131 ISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTM 190
Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
ING+A+ + +F +M+ C++PD +TFVA+ S C+ L D RIG+Q H +VY+ LG
Sbjct: 191 INGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELG 250
Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST-AAWSSMISGYTREGKIERARQ 300
C G N+LL +++MYAKCG + MAE V S + KS AAW+S++S Y G+++ AR+
Sbjct: 251 CFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARR 310
Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
LFDQM +RD+VSWTAMISGYS G F +ALELF K+E LG+ PDEV +VA L AC LGA
Sbjct: 311 LFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGA 370
Query: 361 LDFGKRLHQQYI-ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
L+ G+R+H+QY EN N T+AV+DMYAKCGSID AL VF K + KT L+NS
Sbjct: 371 LELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNS 430
Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
IISGLA HG GE + +F EM L+GLKPD +TFV VL AC H GLV+ GK+ FESM Y
Sbjct: 431 IISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVY 490
Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
G+ P+MEHYGCMVDLL R G LDEA+ LI MP+ AN+VIWRALL+AC++H + + +A
Sbjct: 491 GVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVA 550
Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
+L++L+ DHGA YV+LSNML++T + +EA +RK +D+ GIQKPPGWSY+E N +LH+
Sbjct: 551 SYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNRSLHK 610
Query: 599 FLASKKSHPQTKEIELMLKDMTM 621
FLA KSHP+ K ELML+D+ +
Sbjct: 611 FLAGDKSHPEAKTTELMLRDINI 633
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1641), Expect = e-179, Method: Compositional matrix adjust.
Identities = 320/543 (58%), Positives = 393/543 (72%), Gaps = 40/543 (7%)
Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQP-DAFTFVAMFSACTELNDPRIGKQFHAVV 236
+NT+I GY++ P A+ L+ M I P + FTF + ++C L+ G + H+ +
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
K+ S++ ++ A+I++Y+ G +N+A
Sbjct: 62 IKH--GFESDLFVRNALIHLYSVFGNLNLA------------------------------ 89
Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
R LFD+ RDLVS+ MI GY++V AL LFG+M++ DEVT+VAVL AC
Sbjct: 90 --RTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQN----SDEVTLVAVLSACA 143
Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
LGA D GKRL+ QYIEN VF +N LT AV+DMYAKCGSID+AL +F ++ KN+KT +
Sbjct: 144 RLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFV 203
Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
FNS+I+GLAQHGLGET+I VFRE+ GLKPD VTFV VLCAC H GL+EEGK+ FESM
Sbjct: 204 FNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMF 263
Query: 477 N-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
N YGIKPQMEHYGCMVDLL R G L+EAY L+Q MP++ANSVIWRALL+ACR H N KIG
Sbjct: 264 NAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIG 323
Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
EIAGQKLL++E HGA YVLLSN+LA+ +WEEARQVRK+M+D GI+KPPGWSYIE G
Sbjct: 324 EIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGA 383
Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
+HRF+AS KSHPQ KEIELMLKDM M+LKSAGYVPNT QV+FD+DEEEKE+VVSYHSEKL
Sbjct: 384 IHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKL 443
Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
ALAFGL+ +TIRI KNLRIC DCH AFKL+SEIY REI VRD +RFH F+ G+CSC
Sbjct: 444 ALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSC 503
Query: 716 MDF 718
MDF
Sbjct: 504 MDF 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 316/710 (44%), Positives = 468/710 (65%), Gaps = 8/710 (1%)
Query: 11 LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
L++LLE+C+S+ Q Q+H Q + GLN + + F + +R LF +I
Sbjct: 21 LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 80
Query: 71 PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
PN+FIWNT++RGYSR D PQ + LY ML +G V P+ +TFPF+ R + + G Q
Sbjct: 81 PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRG-VKPDRYTFPFLFKGFTRDIALEYGRQ 139
Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
+H H++K GL++++F+ AL+ Y + G ++ A VF+ D++++N +I+ Y +V +
Sbjct: 140 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 199
Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
+ LF M+D + P T V + SAC++L D R GK+ H+ V KN V SN++L+
Sbjct: 200 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNCK-VESNLVLE 257
Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
A+I+MYA CG M+ A +F +M ++ +W++++SG+T G+I+ AR FD+M ++D
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316
Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
VSWTAMI GY + F +ALELF M++ + PDE TMV+VL AC LGAL+ G+ + +
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI-RT 375
Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
YI+ ++F+ A+IDMY KCG +D A S+F ++ + K + ++I GLA +G G
Sbjct: 376 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFT--WTAMIVGLAVNGHG 433
Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
E ++ +F M + PD +T++ VL AC+H GLV++G+++F M + +GI+P + HYGC
Sbjct: 434 EKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGC 493
Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
+VDLLAR GRL EAY +I++MP ANS++W ALLA CR++R + + E+ +++L+LEPD+
Sbjct: 494 LVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDN 553
Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
GA YVLL N+ A RW + R++R++M D GI+K PG S IE NG +H F+A +SHPQT
Sbjct: 554 GAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQT 613
Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
K I+ L MT LK AGY P+ +V D+ EE+KE V HSEKLA+AFGLINS T
Sbjct: 614 KNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVT 673
Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
IRITKNLR+C DCH KL+S++Y RE++VRD RFH FK G CSC D+W
Sbjct: 674 IRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 316/710 (44%), Positives = 468/710 (65%), Gaps = 8/710 (1%)
Query: 11 LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
L++LLE+C+S+ Q Q+H Q + GLN + + F + +R LF +I
Sbjct: 42 LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 101
Query: 71 PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
PN+FIWNT++RGYSR D PQ + LY ML +G V P+ +TFPF+ R + + G Q
Sbjct: 102 PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRG-VKPDRYTFPFLFKGFTRDIALEYGRQ 160
Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
+H H++K GL++++F+ AL+ Y + G ++ A VF+ D++++N +I+ Y +V +
Sbjct: 161 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 220
Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
+ LF M+D + P T V + SAC++L D R GK+ H+ V KN V SN++L+
Sbjct: 221 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNCK-VESNLVLE 278
Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
A+I+MYA CG M+ A +F +M ++ +W++++SG+T G+I+ AR FD+M ++D
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337
Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
VSWTAMI GY + F +ALELF M++ + PDE TMV+VL AC LGAL+ G+ + +
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI-RT 396
Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
YI+ ++F+ A+IDMY KCG +D A S+F ++ + K + ++I GLA +G G
Sbjct: 397 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFT--WTAMIVGLAVNGHG 454
Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
E ++ +F M + PD +T++ VL AC+H GLV++G+++F M + +GI+P + HYGC
Sbjct: 455 EKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGC 514
Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
+VDLLAR GRL EAY +I++MP ANS++W ALLA CR++R + + E+ +++L+LEPD+
Sbjct: 515 LVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDN 574
Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
GA YVLL N+ A RW + R++R++M D GI+K PG S IE NG +H F+A +SHPQT
Sbjct: 575 GAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQT 634
Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
K I+ L MT LK AGY P+ +V D+ EE+KE V HSEKLA+AFGLINS T
Sbjct: 635 KNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVT 694
Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
IRITKNLR+C DCH KL+S++Y RE++VRD RFH FK G CSC D+W
Sbjct: 695 IRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 315/719 (43%), Positives = 480/719 (66%), Gaps = 16/719 (2%)
Query: 6 LEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFR---S 61
L + L+L+++CKS+ Q QIH Q + +GL ++ I +Q+I+F CK+ L +
Sbjct: 17 LPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFC----CKHELGDMEYA 72
Query: 62 RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
R++F + PN F+WN +++GYSR P A+ +Y ML +G++ P+ +T+PF+L R
Sbjct: 73 RMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVM-PDEYTYPFLLKRFTR 131
Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
++ K G ++H HI+K G ++F++NALIH YS+ G ++ A VF+ S D+V++N +
Sbjct: 132 DTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVM 191
Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
I+GY + K+ ++ LF +M+ + P + T V++ SAC++L D +GK+ H V K+L
Sbjct: 192 ISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV-KDLK 250
Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
+ +L+ A+I+MYA CG M+ A +F M S+ +W+++++G+T G++ AR
Sbjct: 251 -IEPVRVLENALIDMYAACGDMDTALGIFDNMK-SRDVISWTAIVTGFTNLGQVGLARNY 308
Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
FD+M +RD VSWTAMI GY QV F + L LF +M++ I PDE TMV++L AC LGAL
Sbjct: 309 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGAL 368
Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
+ G+ + + YI+ + F+ A+IDMY CG+++ A+ +F +P K + ++I
Sbjct: 369 ELGEWI-KAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKIS--WTAVI 425
Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
GLA +G GE ++ +F +M + PD VT + VLCAC+H G+V++GK+FF M +GI
Sbjct: 426 FGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGI 485
Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
+P + HYGCMVDLL R G L EA+ +I++MP NS++W +LL ACR+HR+ ++ E+A Q
Sbjct: 486 EPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQ 545
Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
++L+LEP++GA YVLL N+ A RWE+ +VRKLM D GI+K PG S IE NG++H F+
Sbjct: 546 QILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFV 605
Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
A + HPQ+KEI L +M++ LK AGY P+T +V D+ EEEKE+ V HSEKLA+AFG
Sbjct: 606 AGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFG 665
Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
LI+S TIRI KNLR+C DCH KL+S++Y RE++VRD RFH F+ G+CSC D+W
Sbjct: 666 LISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-171, Method: Compositional matrix adjust.
Identities = 307/711 (43%), Positives = 461/711 (64%), Gaps = 8/711 (1%)
Query: 10 SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
S ++LLE CKS+ Q QIH + GL+ + + F + + +R +F I
Sbjct: 9 SPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIP 68
Query: 70 NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
P +FIWNT+++GYSR + PQ + +Y ML+ I P+ FTFPF+L R + + G
Sbjct: 69 QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNI-KPDRFTFPFLLKGFTRNMALQYGK 127
Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
+ H +K G + +LF++ A IH +S+ ++ A KVF+ A ++V++N +++GY +VK
Sbjct: 128 VLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVK 187
Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
+ + LF +M+ + P++ T V M SAC++L D GK H Y N G V N++L
Sbjct: 188 QFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGK--HIYKYINGGIVERNLIL 245
Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
+ +I+M+A CG M+ A+ VF M ++ +W+S+++G+ G+I+ AR+ FDQ+ +RD
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTGFANIGQIDLARKYFDQIPERD 304
Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
VSWTAMI GY ++ F +AL LF +M+ + PDE TMV++L AC LGAL+ G+ + +
Sbjct: 305 YVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV-K 363
Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
YI+ + F+ A+IDMY KCG++ A VF ++ K + ++I GLA +G
Sbjct: 364 TYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFT--WTAMIVGLAINGH 421
Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
GE ++A+F M + PD +T++ VLCAC+H G+VE+G+ FF SM + +GIKP + HYG
Sbjct: 422 GEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYG 481
Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
CMVDLL R GRL+EA+ +I +MP NS++W +LL ACR+H+N ++ E+A +++L+LEP+
Sbjct: 482 CMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPE 541
Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
+GA YVLL N+ A RWE RQVRKLM + GI+K PG S +E NG ++ F+A +SHPQ
Sbjct: 542 NGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQ 601
Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
+KEI L++M L AGY P+T +V D+ EE+KET + HSEKLA+A+ LI+S
Sbjct: 602 SKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGI 661
Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
TIRI KNLR+C DCH KL+SE Y RE++VRD RFH F+ G+CSC +FW
Sbjct: 662 TIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 304/713 (42%), Positives = 460/713 (64%), Gaps = 13/713 (1%)
Query: 12 LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
L+L++ C KQ QIH Q++ +GL S+S+LI+ ALS + L ++ +F QI +
Sbjct: 39 LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPS-LDYAQQVFDQIPH 97
Query: 71 PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
PN++ WNTL+R Y+ S +P ++L+++ ML + P+ FTFPF++ + + L +G
Sbjct: 98 PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA 157
Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
H +IK L D+FI N+LIHFY+ G + ++VF RD+VS+N++I + Q
Sbjct: 158 FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGC 217
Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
P AL LF++M+ ++P+ T V + SAC + +D G+ H+ + +N +G ++ L
Sbjct: 218 PEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR--IGESLTLS 275
Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
A+++MY KCG + A+R+F M K +W++M+ GY + G+ + A+ +FD M +D+
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDI 334
Query: 311 VSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
+W A+IS Y Q G +ALELF +++ S PDEVT+V+ L AC LGA+D G +H
Sbjct: 335 AAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHV 394
Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
YI+ N LTT++IDMY KCG + AL VF+ + + K V +++++I+GLA HG
Sbjct: 395 -YIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER--KDVFVWSAMIAGLAMHGH 451
Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
G+ +IA+F +M+ +KP+ VTF +LCACSH GLVEEG+ FF M L YG+ P ++HY
Sbjct: 452 GKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYA 511
Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP- 547
CMVD+L R G L+EA LI+ MP + +W ALL AC +H N + E A +L++LEP
Sbjct: 512 CMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPG 571
Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
+HGA YVLLSN+ A+ +W+ +RKLM D G++K PG S IE +G +H FL SHP
Sbjct: 572 NHGA-YVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHP 630
Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLINSRS 666
K+I L ++ +L++ GYVPN ++ V+EE+ KE + HSEKLA+AFGLI++
Sbjct: 631 SAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQ 690
Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
+ IRI KNLR+CGDCH KL+S++Y REI++RD RFH F++G+CSCMD+W
Sbjct: 691 SQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 315/752 (41%), Positives = 460/752 (61%), Gaps = 76/752 (10%)
Query: 3 RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
+L+ H SL LL +CKS + QIH QI+ +GL N + S+LI F A+S N L +
Sbjct: 28 KLLQNHPSL-TLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGN-LSYA 85
Query: 62 RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
+LF I+ PN FIWNT++RG S S SP A+ Y ML G V PN++TFPF+L SCA+
Sbjct: 86 LLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSCAK 144
Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS-------------------------- 155
+ + + G QIH H++K GLE D F+ +LI+ Y+
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204
Query: 156 IFGY-----INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
I GY +++A ++FE RD VS+N +I GYAQ AL F++M+ + + P+
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264
Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
T V + SAC + +G + + + +GSN+ L A+I+MY+KCG
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDH--GLGSNLRLVNALIDMYSKCG--------- 313
Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
+++AR LF+ + ++D++SW MI GYS + + +AL
Sbjct: 314 -----------------------DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL 350
Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG-RNIFLTTAVID 389
LF KM+ + P++VT V++L AC LGALD GK +H YI+ G N L T++ID
Sbjct: 351 ALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHA-YIDKKFLGLTNTSLWTSLID 409
Query: 390 MYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
MYAKCG+I+ A VF + PK+L + +N++ISGLA HG ++ +FR+M G +PD
Sbjct: 410 MYAKCGNIEAAKQVFAGMKPKSLGS---WNAMISGLAMHGHANMALELFRQMRDEGFEPD 466
Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
+TFV VL ACSH GLVE G+Q F SM+ +Y I P+++HYGCM+DLL R G DEA L+
Sbjct: 467 DITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM 526
Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
++M + IW +LL ACR+H N ++GE A + L +LEP++ YVLLSN+ A RW+
Sbjct: 527 KNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWD 586
Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
+ ++R ++D G++K PG S IE + +H FL K H Q+++I ML ++ L+ AG
Sbjct: 587 DVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAG 646
Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
+VP+T +V++D+DEE KE +S+HSEKLA+AFGLI+++ + TIRI KNLR+CG+CH A K
Sbjct: 647 HVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIK 706
Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
L+S+I+ REI+ RD RFH FK G+CSCMD+W
Sbjct: 707 LISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | ||||||
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.965 | 0.940 | 0.396 | 1.6e-143 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.961 | 0.932 | 0.4 | 4.6e-137 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.963 | 0.959 | 0.387 | 1.8e-133 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.856 | 0.896 | 0.373 | 1.7e-121 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.827 | 0.959 | 0.410 | 2.8e-121 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.816 | 0.861 | 0.41 | 2.5e-120 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.831 | 0.925 | 0.411 | 3.2e-120 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.598 | 0.496 | 0.363 | 6.7e-119 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.917 | 0.776 | 0.365 | 1.1e-117 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.848 | 0.980 | 0.379 | 1.4e-117 |
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1403 (498.9 bits), Expect = 1.6e-143, P = 1.6e-143
Identities = 280/707 (39%), Positives = 442/707 (62%)
Query: 18 CKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
C SL+Q Q HG ++ +G + S+S+L + ALS + L +R +F +I PN F W
Sbjct: 40 CVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFAS-LEYARKVFDEIPKPNSFAW 98
Query: 77 NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
NTL+R Y+ P ++ + M+S+ PN +TFPF++ + A +SS G +H +
Sbjct: 99 NTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAV 158
Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
K + D+F+ N+LIH Y G +++A KVF +D+VS+N++ING+ Q P AL
Sbjct: 159 KSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALE 218
Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
LF+KM+ ++ T V + SAC ++ + G+Q + + +N V N+ L A+++M
Sbjct: 219 LFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR--VNVNLTLANAMLDM 276
Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
Y KCG + A+R+F M K W++M+ GY E AR++ + M Q+D+V+W A+
Sbjct: 277 YTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 317 ISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
IS Y Q G ++AL +F +++ + +++T+V+ L AC +GAL+ G+ +H YI+
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS-YIKKH 394
Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
N +T+A+I MY+KCG ++ + VF + K + V +++++I GLA HG G ++
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK--RDVFVWSAMIGGLAMHGCGNEAVD 452
Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLL 494
+F +M+ +KP+GVTF V CACSH GLV+E + F M NYGI P+ +HY C+VD+L
Sbjct: 453 MFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVL 512
Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP-DHGAHY 553
R G L++A I++MP ++ +W ALL AC++H N + E+A +LL+LEP + GAH
Sbjct: 513 GRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAH- 571
Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
VLLSN+ A+ +WE ++RK M +G++K PG S IE +G +H FL+ +HP ++++
Sbjct: 572 VLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVY 631
Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLINSRSKETIRI 672
L ++ KLKS GY P QV+ ++EEE KE ++ HSEKLA+ +GLI++ + + IR+
Sbjct: 632 GKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRV 691
Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
KNLR+CGDCH KL+S++Y REI+VRD RFH F+ G CSC DFW
Sbjct: 692 IKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
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| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1342 (477.5 bits), Expect = 4.6e-137, P = 4.6e-137
Identities = 284/710 (40%), Positives = 434/710 (61%)
Query: 18 CKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
CK+L+ IH Q++ GL N + + S+LI F LS GL + +F I PN+ IW
Sbjct: 43 CKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIW 102
Query: 77 NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
NT+ RG++ S P AL LY M+S G++ PN++TFPFVL SCA+ +FK G QIH H++
Sbjct: 103 NTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLKSCAKSKAFKEGQQIHGHVL 161
Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
K G + DL++ +LI Y G + +AHKVF+ S RD+VSY LI GYA A
Sbjct: 162 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQK 221
Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHAVVYKNLGCVGSNMLLKTAVIN 255
LF D D ++ AM S E + + + F ++ N+ S M+ V++
Sbjct: 222 LF----DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV---TVVS 274
Query: 256 MYAKCGLMNMAERV---FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
A+ G + + +V G + +++I Y++ G++E A LF+++ +D++S
Sbjct: 275 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 334
Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
W +I GY+ + + +AL LF +M G P++VTM+++L AC LGA+D G+ +H YI
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV-YI 393
Query: 373 ENVVFG-RNIF-LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
+ + G N L T++IDMYAKCG I+ A VF I K++S +N++I G A HG
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILH--KSLSSWNAMIFGFAMHGRA 451
Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGC 489
+ S +F M +G++PD +TFV +L ACSH G+++ G+ F +M +Y + P++EHYGC
Sbjct: 452 DASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGC 511
Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
M+DLL G EA +I M + + VIW +LL AC++H N ++GE + L+ +EP++
Sbjct: 512 MIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPEN 571
Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
YVLLSN+ A RW E + R L++D G++K PG S IE + +H F+ K HP+
Sbjct: 572 PGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 631
Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
+EI ML++M + L+ AG+VP+T +V+ +++EE KE + +HSEKLA+AFGLI+++
Sbjct: 632 REIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 691
Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
+ I KNLR+C +CH A KL+S+IY+REI+ RD RFH F+ G CSC D+W
Sbjct: 692 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
Identities = 275/710 (38%), Positives = 421/710 (59%)
Query: 18 CKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP-NIFIW 76
CKSL Q+H I+ + +NH ++S + ++S L + +FS I +P ++
Sbjct: 22 CKSLNHIKQLHAHILRTVINHKLNS--FLFNLSVSSSSINLSYALNVFSSIPSPPESIVF 79
Query: 77 NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
N +R SRS P+ ++ Y + G + F+F +L + +++S+ G ++H
Sbjct: 80 NPFLRDLSRSSEPRATILFYQRIRHVG-GRLDQFSFLPILKAVSKVSALFEGMELHGVAF 138
Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
K D F+ + Y+ G IN A VF+ RD+V++NT+I Y + A
Sbjct: 139 KIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFK 198
Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
LF +M+DS + PD + SAC + R + + + +N + +++L TA++ M
Sbjct: 199 LFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLL--TALVTM 256
Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
YA G M+MA F M + ++ ++M+SGY++ G+++ A+ +FDQ +++DLV WT M
Sbjct: 257 YAGAGCMDMAREFFRKMSV-RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTM 315
Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
IS Y + +AL +F +M GI PD V+M +V+ AC LG LD K +H N +
Sbjct: 316 ISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGL 375
Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
+ + A+I+MYAKCG +D VF K+P+ + V ++S+I+ L+ HG ++++
Sbjct: 376 ESE-LSINNALINMYAKCGGLDATRDVFEKMPR--RNVVSWSSMINALSMHGEASDALSL 432
Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
F M+ ++P+ VTFV VL CSH GLVEEGK+ F SM + Y I P++EHYGCMVDL
Sbjct: 433 FARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFG 492
Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
R L EA +I+SMP +N VIW +L++ACR+H ++G+ A +++L+LEPDH VL
Sbjct: 493 RANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVL 552
Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
+SN+ A RWE+ R +R++M++ + K G S I+ NG H FL K H Q+ EI
Sbjct: 553 MSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAK 612
Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE------T 669
L ++ KLK AGYVP+ V+ DV+EEEK+ +V +HSEKLAL FGL+N +E
Sbjct: 613 LDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV 672
Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
IRI KNLR+C DCHL FKL+S++Y REI+VRD RFH +K G CSC D+W
Sbjct: 673 IRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
Identities = 234/627 (37%), Positives = 398/627 (63%)
Query: 18 CKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
CK+ Q Q+H Q + G+ + + + + F S + + LF +I P++ +WN
Sbjct: 44 CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWN 103
Query: 78 TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS-SFKSGCQIHCHII 136
+++G+S+ D E + LY +ML +G V+P++ TFPF+LN R + G ++HCH++
Sbjct: 104 NMIKGWSKVDCDGEGVRLYLNMLKEG-VTPDSHTFPFLLNGLKRDGGALACGKKLHCHVV 162
Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
KFGL +L+++NAL+ YS+ G ++ A VF+ D+ S+N +I+GY ++KE ++
Sbjct: 163 KFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIE 222
Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVIN 255
L +M+ + + P + T + + SAC+++ D + K+ H V + C ++ L+ A++N
Sbjct: 223 LLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE---CKTEPSLRLENALVN 279
Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
YA CG M++A R+F +M ++ +W+S++ GY G ++ AR FDQM RD +SWT
Sbjct: 280 AYAACGEMDIAVRIFRSM-KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTI 338
Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
MI GY + G F+++LE+F +M+S G+ PDE TMV+VL AC LG+L+ G+ + + YI+
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWI-KTYIDKN 397
Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
++ + A+IDMY KCG + A VF+ + + K + +++ GLA +G G+ +I
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT--WTAMVVGLANNGQGQEAIK 455
Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLL 494
VF +M+ M ++PD +T++ VL AC+H G+V++ ++FF M + + I+P + HYGCMVD+L
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDML 515
Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
R G + EAY +++ MP + NS++W ALL A RLH + + E+A +K+L+LEPD+GA Y
Sbjct: 516 GRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYA 575
Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
LL N+ A RW++ R+VR+ + D I+K PG+S IE NG H F+A KSH Q++EI +
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYM 635
Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDE 641
L+++ + A Y+P+T +++F+ +
Sbjct: 636 KLEELAQESTFAAYLPDTSELLFEAGD 662
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 250/609 (41%), Positives = 369/609 (60%)
Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY---SIFGYINNAHKVFEGSLA 172
L C++ K QIH ++K GL D + + F + ++ A VF+G
Sbjct: 21 LQRCSKQEELK---QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77
Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
D +N +I G++ EP +L L+++M S +A+TF ++ AC+ L+ Q
Sbjct: 78 PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137
Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
HA + K LG +++ ++IN YA G +A +F + +W+S+I GY +
Sbjct: 138 HAQITK-LG-YENDVYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDVSWNSVIKGYVKA 194
Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
GK++ A LF +M +++ +SWT MISGY Q +AL+LF +M++ + PD V++ L
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254
Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
AC LGAL+ GK +H Y+ + L +IDMYAKCG ++ AL VF I K K
Sbjct: 255 SACAQLGALEQGKWIHS-YLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK--K 311
Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
+V + ++ISG A HG G +I+ F EM+ MG+KP+ +TF VL ACS+ GLVEEGK F
Sbjct: 312 SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIF 371
Query: 473 ESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
SM +Y +KP +EHYGC+VDLL R G LDEA IQ MP N+VIW ALL ACR+H+N
Sbjct: 372 YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKN 431
Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
++GE G+ L+ ++P HG YV +N+ A +W++A + R+LM + G+ K PG S I
Sbjct: 432 IELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD-VDEEEKETVVSY 650
GT H FLA +SHP+ ++I+ + M KL+ GYVP +++ D VD++E+E +V
Sbjct: 492 LEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQ 551
Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
HSEKLA+ +GLI ++ IRI KNLR+C DCH KL+S+IY+R+I++RD RFH F+
Sbjct: 552 HSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRD 611
Query: 711 GNCSCMDFW 719
G CSC D+W
Sbjct: 612 GKCSCGDYW 620
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
Identities = 246/600 (41%), Positives = 376/600 (62%)
Query: 18 CKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
CK L QI Q++ +GL +SS+LI+F ALS + + +IL I+NPNIF W
Sbjct: 63 CKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL-KGIENPNIFSW 121
Query: 77 NTLMRGYSRSDSPQEALVLYTSMLSKGIVS--PNNFTFPFVLNSCARLSSFKSGCQIHCH 134
N +RG+S S++P+E+ +LY ML G P++FT+P + CA L G I H
Sbjct: 122 NVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGH 181
Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
++K LE + NA IH ++ G + NA KVF+ S RDLVS+N LINGY ++ E A
Sbjct: 182 VLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKA 241
Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
+++++ M+ ++PD T + + S+C+ L D GK+F+ V +N G + + L A++
Sbjct: 242 IYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN-G-LRMTIPLVNALM 299
Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
+M++KCG ++ A R+F + ++ +W++MISGY R G ++ +R+LFD M+++D+V W
Sbjct: 300 DMFSKCGDIHEARRIFDNLE-KRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWN 358
Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
AMI G Q AL LF +M++ PDE+TM+ L AC LGALD G +H+ YIE
Sbjct: 359 AMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHR-YIEK 417
Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNLKTVSLFNSIISGLAQHGLGETS 433
N+ L T+++DMYAKCG+I ALSVF+ I +N T + +II GLA HG T+
Sbjct: 418 YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLT---YTAIIGGLALHGDASTA 474
Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVD 492
I+ F EM G+ PD +TF+ +L AC HGG+++ G+ +F M + + + PQ++HY MVD
Sbjct: 475 ISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVD 534
Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
LL R G L+EA L++SMP +A++ +W ALL CR+H N ++GE A +KLL+L+P
Sbjct: 535 LLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGI 594
Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
YVLL M E WE+A++ R++M++ G++K PG S IE NG + F+ KS P++++I
Sbjct: 595 YVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKI 654
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
Identities = 259/630 (41%), Positives = 376/630 (59%)
Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY----INNAHKVF 167
FP + N+C + QIH IK G D ++ F + ++ AHK+F
Sbjct: 27 FPQI-NNCRTIRDLS---QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIF 82
Query: 168 EGSLARDLVSYNTLINGYAQVKEPCP--ALWLFRKMQ-DSCIQPDAFTFVAMFSACTELN 224
R+ S+NT+I G+++ E A+ LF +M D ++P+ FTF ++ AC +
Sbjct: 83 NQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTG 142
Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA--- 281
+ GKQ H + K G G ++ ++ MY CG M A +F + K
Sbjct: 143 KIQEGKQIHGLALK-YGFGGDEFVMSN-LVRMYVMCGFMKDARVLFYKNIIEKDMVVMTD 200
Query: 282 ----------WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
W+ MI GY R G + AR LFD+M QR +VSW MISGYS G F A+E
Sbjct: 201 RRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE 260
Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
+F +M+ I P+ VT+V+VL A LG+L+ G+ LH Y E+ + L +A+IDMY
Sbjct: 261 VFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL-YAEDSGIRIDDVLGSALIDMY 319
Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
+KCG I+ A+ VF ++P+ + V ++++I+G A HG +I F +M G++P V
Sbjct: 320 SKCGIIEKAIHVFERLPR--ENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377
Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
++ +L ACSHGGLVEEG+++F M++ G++P++EHYGCMVDLL R G LDEA I +M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437
Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEA 569
P + VIW+ALL ACR+ N ++G+ L+D+ P D GA YV LSNM A W E
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGA-YVALSNMYASQGNWSEV 496
Query: 570 RQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYV 629
++R M + I+K PG S I+ +G LH F+ SHP+ KEI ML +++ KL+ AGY
Sbjct: 497 SEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYR 556
Query: 630 PNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLL 689
P T QV+ +++EE+KE V+ YHSEK+A AFGLI++ + IRI KNLRIC DCH + KL+
Sbjct: 557 PITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLI 616
Query: 690 SEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
S++Y+R+I VRD RFH F+ G+CSCMD+W
Sbjct: 617 SKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 158/435 (36%), Positives = 257/435 (59%)
Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
+++I+ Y++ I++A +F + +++++SWT++I+G +AL +F + + +
Sbjct: 437 NNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQ 495
Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
P+ +T+ A L AC +GAL GK +H + V G + FL A++DMY +CG ++TA S
Sbjct: 496 PNAITLTAALAACARIGALMCGKEIHAHVLRTGV-GLDDFLPNALLDMYVRCGRMNTAWS 554
Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
F K+ V+ +N +++G ++ G G + +F M ++PD +TF+++LC CS
Sbjct: 555 QFNSQKKD---VTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKS 611
Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
+V +G +F M +YG+ P ++HY C+VDLL R G L EA+ IQ MP + +W AL
Sbjct: 612 QMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGAL 671
Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
L ACR+H +GE++ Q + +L+ +Y+LL N+ A+ +W E +VR++M ++G+
Sbjct: 672 LNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLT 731
Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
G S++E G +H FL+ K HPQTKEI +L+ K+ G + D E
Sbjct: 732 VDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEI 791
Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
++ + HSE+ A+AFGLIN+ I +TKNL +C +CH K +S+ RREI VRDA
Sbjct: 792 SRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDA 851
Query: 703 IRFHLFKKGNCSCMD 717
FH FK G CSC D
Sbjct: 852 EHFHHFKDGECSCGD 866
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| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 251/686 (36%), Positives = 389/686 (56%)
Query: 52 SGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT 111
S C++ L +R +F ++ ++ WN+++ Y++ P+ AL +++ M ++ P+N T
Sbjct: 173 SRCRS-LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNIT 231
Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
VL CA L + G Q+HC + + ++F+ N L+ Y+ G ++ A+ VF
Sbjct: 232 LVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMS 291
Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
+D+VS+N ++ GY+Q+ A+ LF KMQ+ I+ D T+ A S + +G +
Sbjct: 292 VKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRG---LGYE 348
Query: 232 FHAVVYKNLGC-VGSNMLLKTAVINMYAKCG-LMNMAE-RVFSTM--------GMSKSTA 280
V + L + N + +V++ A G LM+ E ++ G
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408
Query: 281 AWSSMISGYTREGKIERARQLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKM-- 336
+ +I Y + K++ AR +FD + +RD+V+WT MI GYSQ G ++ALEL +M
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
E P+ T+ L AC L AL GK++H + N +F++ +IDMYAKCGS
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGS 528
Query: 397 IDTALSVFYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
I A VF + KN T + S+++G HG GE ++ +F EM +G K DGVT + V
Sbjct: 529 ISDARLVFDNMMAKNEVT---WTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVV 585
Query: 456 LCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
L ACSH G++++G ++F M +G+ P EHY C+VDLL R GRL+ A LI+ MP +
Sbjct: 586 LYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEP 645
Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
V+W A L+ CR+H ++GE A +K+ +L +H Y LLSN+ A RW++ ++R
Sbjct: 646 PPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRS 705
Query: 575 LMDDSGIQKPPGWSYIEH-NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTV 633
LM G++K PG S++E GT F K+HP KEI +L D ++K GYVP T
Sbjct: 706 LMRHKGVKKRPGCSWVEGIKGTT-TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETG 764
Query: 634 QVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIY 693
+ DVD+EEK+ ++ HSEKLALA+G++ + IRITKNLR+CGDCH AF +S I
Sbjct: 765 FALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRII 824
Query: 694 RREIMVRDAIRFHLFKKGNCSCMDFW 719
+I++RD+ RFH FK G+CSC +W
Sbjct: 825 DHDIILRDSSRFHHFKNGSCSCKGYW 850
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| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
Identities = 240/632 (37%), Positives = 386/632 (61%)
Query: 100 LSKGIVSPNNFTFP--FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY--- 154
+S +++ F P +L SC+ S K IH +++ L D+F+ + L+
Sbjct: 1 MSNIVLNTLRFKHPKLALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALCVDD 57
Query: 155 SIFGYINN----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
S F N A+ +F +L +N LI ++ EP A + +M S I PD
Sbjct: 58 STFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDN 117
Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
TF + A +E+ +G+Q H+ + + G +++ ++ ++++MYA CG + A R+F
Sbjct: 118 ITFPFLIKASSEMECVLVGEQTHSQIVR-FG-FQNDVYVENSLVHMYANCGFIAAAGRIF 175
Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
MG + +W+SM++GY + G +E AR++FD+M R+L +W+ MI+GY++ F +A+
Sbjct: 176 GQMGF-RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 234
Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
+LF M+ G+ +E MV+V+ +C LGAL+FG+R ++ Y+ N+ L TA++DM
Sbjct: 235 DLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYE-YVVKSHMTVNLILGTALVDM 293
Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSL-FNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
+ +CG I+ A+ VF +P+ T SL ++SII GLA HG ++ F +M +G P
Sbjct: 294 FWRCGDIEKAIHVFEGLPE---TDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRD 350
Query: 450 VTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
VTF VL ACSHGGLVE+G + +E+M ++GI+P++EHYGC+VD+L R G+L EA I
Sbjct: 351 VTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFIL 410
Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568
M N+ I ALL AC++++N ++ E G L+ ++P+H +YVLLSN+ A +W++
Sbjct: 411 KMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDK 470
Query: 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF-LASKKSHPQTKEIELMLKDMTMKLKSAG 627
+R +M + ++KPPGWS IE +G +++F + + HP+ +I +++ K++ G
Sbjct: 471 IESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIG 530
Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
Y NT FDVDEEEKE+ + HSEKLA+A+G++ ++ TIRI KNLR+C DCH K
Sbjct: 531 YKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTK 590
Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
L+SE+Y RE++VRD RFH F+ G CSC D+W
Sbjct: 591 LISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82380 | PP175_ARATH | No assigned EC number | 0.3919 | 0.9819 | 0.9566 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00000621001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (523 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 719 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-149 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-147 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-77 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-50 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-44 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-38 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-24 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-23 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 455 bits (1173), Expect = e-149
Identities = 237/711 (33%), Positives = 384/711 (54%), Gaps = 53/711 (7%)
Query: 14 LLESC---KSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQID 69
+L +C L + ++H +V G + + LI+ + G + +R++F ++
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG---DVVSARLVFDRMP 249
Query: 70 NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
+ WN ++ GY + E L L+ +M V P+ T V+++C L + G
Sbjct: 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGR 308
Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
++H +++K G D+ + N+LI Y G A KVF +D VS+ +I+GY +
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368
Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
P AL + M+ + PD T ++ SAC L D +G + H + + G + S +++
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA-ERKGLI-SYVVV 426
Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
A+I MY+KC I++A ++F + ++D
Sbjct: 427 ANALIEMYSKC--------------------------------KCIDKALEVFHNIPEKD 454
Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
++SWT++I+G +AL F +M L + P+ VT++A L AC +GAL GK +H
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHA 513
Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
+ + G + FL A++D+Y +CG ++ A + F + K V +N +++G HG
Sbjct: 514 HVLRTGI-GFDGFLPNALLDLYVRCGRMNYAWNQF---NSHEKDVVSWNILLTGYVAHGK 569
Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
G ++ +F M G+ PD VTF+++LCACS G+V +G ++F SM Y I P ++HY
Sbjct: 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629
Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
C+VDLL R G+L EAY I MP + +W ALL ACR+HR+ ++GE+A Q + +L+P+
Sbjct: 630 CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689
Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
+Y+LL N+ A+ +W+E +VRK M ++G+ PG S++E G +H FL +SHPQ
Sbjct: 690 SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749
Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE--KETVVSYHSEKLALAFGLINSRS 666
KEI +L+ K+K++G +DE E K+ + HSE+LA+AFGLIN+
Sbjct: 750 IKEINTVLEGFYEKMKASGL---AGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVP 806
Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
I +TKNL +C +CH K +S+I RREI VRD +FH FK G CSC D
Sbjct: 807 GMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 444 bits (1143), Expect = e-147
Identities = 209/610 (34%), Positives = 335/610 (54%), Gaps = 38/610 (6%)
Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
T+ ++ +C L S + ++ H+ G E D ++ N ++ + G + +A ++F+
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
R+L S+ T+I G A LFR+M + + TFV M A L R G+
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
Q H V K G VG + + A+I+MY+KCG
Sbjct: 245 QLHCCVLK-TGVVG-DTFVSCALIDMYSKCG----------------------------- 273
Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
IE AR +FD M ++ V+W +M++GY+ G +AL L+ +M G+ D+ T
Sbjct: 274 ---DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
++R L L+ K+ H I F +I TA++D+Y+K G ++ A +VF ++P+
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR- 388
Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
K + +N++I+G HG G ++ +F M G+ P+ VTF+ VL AC + GL E+G +
Sbjct: 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 471 FFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
F+SM N+ IKP+ HY CM++LL R+G LDEAY +I+ P+ +W ALL ACR+H
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507
Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
+N ++G +A +KL + P+ +YV+L N+ + R EA +V + + G+ P ++
Sbjct: 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
IE H F + + HPQ++EI L ++ ++ GYV +++ DVDE+E++
Sbjct: 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGR 627
Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
YHSEKLA+AFGLIN+ ++IT++ RIC DCH K ++ + +REI+VRDA RFH FK
Sbjct: 628 YHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFK 687
Query: 710 KGNCSCMDFW 719
G CSC D+W
Sbjct: 688 LGKCSCGDYW 697
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 2e-77
Identities = 159/461 (34%), Positives = 238/461 (51%), Gaps = 41/461 (8%)
Query: 64 LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
+F ++ ++F WN L+ GY+++ EAL LY ML G V P+ +TFP VL +C +
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIP 201
Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
G ++H H+++FG E D+ + NALI Y G + +A VF+ RD +S+N +I+
Sbjct: 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261
Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
GY + E L LF M++ + PD T ++ SAC L D R+G++ H V K G
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFA 320
Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
++ + ++I MY G AE+VFS
Sbjct: 321 V-DVSVCNSLIQMYLSLGSWGEAEKVFS-------------------------------- 347
Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
+M+ +D VSWTAMISGY + G +ALE + ME + PDE+T+ +VL AC LG LD
Sbjct: 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407
Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
G +LH + E + + A+I+MY+KC ID AL VF+ IP+ K V + SII+G
Sbjct: 408 GVKLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAG 464
Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
L + ++ FR+M L+ LKP+ VT + L AC+ G + GK+ +L GI
Sbjct: 465 LRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523
Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
++DL R GR++ A+ S D S W LL
Sbjct: 524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS--WNILLT 562
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 8e-50
Identities = 122/473 (25%), Positives = 221/473 (46%), Gaps = 40/473 (8%)
Query: 77 NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
N+ +R ++AL L SM + V + + + C + + G ++ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
+ + NA++ + FG + +A VF RDL S+N L+ GYA+ AL
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
L+ +M + ++PD +TF + C + D G++ HA V + G ++ + A+I M
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FG-FELDVDVVNALITM 231
Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
Y KC G + AR +FD+M +RD +SW AM
Sbjct: 232 YVKC--------------------------------GDVVSARLVFDRMPRRDCISWNAM 259
Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
ISGY + G + LELF M L + PD +T+ +V+ AC LG G+ +H Y+
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH-GYVVKTG 318
Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
F ++ + ++I MY GS A VF ++ K + ++ISG ++GL + ++
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM--ETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
+ ME + PD +T +VL AC+ G ++ G + E G+ + ++++ ++
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRL-HRNAKIGEIAGQKLLDLEPD 548
+D+A + ++P + + + W +++A RL +R + Q LL L+P+
Sbjct: 437 CKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 3e-44
Identities = 130/503 (25%), Positives = 228/503 (45%), Gaps = 81/503 (16%)
Query: 13 ALLESCKSLKQ---ALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRILFSQI 68
AL+E+C +LK ++ + SG +++ L K G L +R LF ++
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFE---PDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 69 DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
N+ W T++ G + + +EA L+ M G + TF +L + A L S ++G
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVMLRASAGLGSARAG 243
Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
Q+HC ++K G+ D F+ ALI YS G I +A VF+G + V++N+++ GYA
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
AL L+ +M+DS + D FTF M + L KQ HA + + +++
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT--GFPLDIV 361
Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
TA++++Y+K W G++E AR +FD+M ++
Sbjct: 362 ANTALVDLYSK----------------------W----------GRMEDARNVFDRMPRK 389
Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
+L+SW A+I+GY G ++A+E+F +M + G+ P+ VT +AVL AC G + G +
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449
Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
Q EN +I++ + G +D A ++ + P
Sbjct: 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-------------------- 489
Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHY 487
KP + +L AC +E G+ E + YG+ P+ + +Y
Sbjct: 490 ----------------FKPTVNMWAALLTACRIHKNLELGRLAAEKL--YGMGPEKLNNY 531
Query: 488 GCMVDLLARDGRLDEAYGLIQSM 510
+++L GR EA +++++
Sbjct: 532 VVLLNLYNSSGRQAEAAKVVETL 554
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-38
Identities = 100/337 (29%), Positives = 160/337 (47%), Gaps = 39/337 (11%)
Query: 194 ALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
AL LF ++ C A T+ A+ AC L R K + V + + +
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS--GFEPDQYMMNR 163
Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
V+ M+ KCG++ I+ AR+LFD+M +R+L S
Sbjct: 164 VLLMHVKCGML-------------------------------ID-ARRLFDEMPERNLAS 191
Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
W +I G G + +A LF +M G + T V +LRA GLG+ G++LH +
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
+ V G + F++ A+IDMY+KCG I+ A VF +P+ KT +NS+++G A HG E
Sbjct: 252 KTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEE 308
Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
++ ++ EM G+ D TF ++ S L+E KQ ++ G + +VD
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
L ++ GR+++A + MP N + W AL+A H
Sbjct: 369 LYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGNH 404
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-24
Identities = 68/281 (24%), Positives = 138/281 (49%), Gaps = 8/281 (2%)
Query: 9 SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
+S+L+ L +++H GL ++ + ++ LI ++ C + ++ +F
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID---KALEVFHN 449
Query: 68 IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
I ++ W +++ G ++ EAL+ + ML + PN+ T L++CAR+ +
Sbjct: 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMC 507
Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
G +IH H+++ G+ FD F+ NAL+ Y G +N A F S +D+VS+N L+ GY
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVA 566
Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
+ A+ LF +M +S + PD TF+++ AC+ G ++ + + N+
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT-PNL 625
Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
V+++ + G + A + M ++ A W ++++
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 7/288 (2%)
Query: 61 SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
+R +F + WN+++ GY+ +EAL LY M G VS + FTF ++ +
Sbjct: 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFS 336
Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
RL+ + Q H +I+ G D+ AL+ YS +G + +A VF+ ++L+S+N
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396
Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
LI GY A+ +F +M + P+ TF+A+ SAC G + + +N
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456
Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
M +I + + GL++ A + + W+++++ +E R
Sbjct: 457 RIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515
Query: 301 LFDQ---MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG--IHP 343
++ M L ++ +++ Y+ G ++A ++ ++ G +HP
Sbjct: 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-18
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 19/120 (15%)
Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE------KETVVSY 650
+ L+ SHP +KE ++ ++K G VP T ++ DVD EE K +++
Sbjct: 9 KKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLAS 62
Query: 651 HSEKLALAFGLINSRSKETIRITKNL-RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
H+EK ALA+GL+ T RI K L R+CGDCH F+ +++ REI+VRD RFH FK
Sbjct: 63 HAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 73/304 (24%), Positives = 145/304 (47%), Gaps = 21/304 (6%)
Query: 249 LKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
L T +I+ AK G ++ VF M G+ + + ++I G R G++ +A + M
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 306 DQR----DLVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLG 359
+ D V + A+IS Q G +A ++ +M E+ I PD +T+ A+++AC G
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFN 418
+D K ++Q E + G T AV + ++ G D ALS++ + K +K +F
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAV-NSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 419 SIISGLAQH-GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
S + +A H G + + + ++ G+K V++ +++ ACS+ ++ + +E + +
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM------PYDANSVIWRALLAACRLHRN 531
++P + ++ L +L +A ++ M P N++ + LL A +
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP---NTITYSILLVASERKDD 769
Query: 532 AKIG 535
A +G
Sbjct: 770 ADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 8e-14
Identities = 78/351 (22%), Positives = 151/351 (43%), Gaps = 32/351 (9%)
Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
V E L D Y TLI+ A+ + +F +M ++ ++ + TF A+ C
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG- 521
Query: 226 PRIGKQFHA---VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA-- 280
++ K F A + KN V + ++ A+I+ CG +R F + K+
Sbjct: 522 -QVAKAFGAYGIMRSKN---VKPDRVVFNALIS---ACGQSGAVDRAFDVLAEMKAETHP 574
Query: 281 ------AWSSMISGYTREGKIERARQLFDQMDQRDLVS----WTAMISGYSQVGGFSQAL 330
+++ G+++RA++++ + + ++ +T ++ SQ G + AL
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALD--FGKRLHQQYIENVVFGRNIFLTTAVI 388
++ M+ G+ PDEV A++ G LD F L + + G ++++
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI-LQDARKQGIKLG--TVSYSSLM 691
Query: 389 DMYAKCGSIDTALSVFYKIPKNLK---TVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
+ + AL ++ I K++K TVS N++I+ L + ++ V EM+ +GL
Sbjct: 692 GACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
P+ +T+ +L A + G GIKP + C+ L R
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 70/289 (24%), Positives = 129/289 (44%), Gaps = 54/289 (18%)
Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
F K+ +N T+S FN ++S A + ++ V R ++ GLK D + T++ C+ G
Sbjct: 428 FAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE---AYGLIQSMPYDANSVIWR 520
V+ + F M+N G++ + +G ++D AR G++ + AYG+++S + V++
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 521 ALLAACRLHRNAKIGEIAGQKLLD-----------LEPDH---GAHYVLLSNMLAETYRW 566
AL++AC + G A + D ++PDH GA L A +
Sbjct: 547 ALISAC-----GQSG--AVDRAFDVLAEMKAETHPIDPDHITVGA----LMKACANAGQV 595
Query: 567 EEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML---KDMTMKL 623
+ A++V +++ + I+ GT + + S Q + + L DM K
Sbjct: 596 DRAKEVYQMIHEYNIK-----------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK- 643
Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
G P+ V VD V+ H+ L AF ++ K+ I++
Sbjct: 644 ---GVKPDEVFFSALVD-------VAGHAGDLDKAFEILQDARKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
D+V++ +I GY + G +AL+LF +M+ GI P+ T ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 8e-09
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
D+V+YNTLI+GY + + AL LF +M+ I+P+ +T+ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 71 PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
P++ +NTL+ GY + +EAL L+ M +GI PN +T+ +++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-07
Identities = 13/50 (26%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQ 322
++++I GY ++GK+E A +LF++M +R ++ +++ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-06
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
V +N++I G + G E ++ +F EM+ G+KP+ T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGI 341
V++ ++ISGY + G +ALELF +M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 58/293 (19%), Positives = 121/293 (41%), Gaps = 32/293 (10%)
Query: 99 MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
M++ G V N TF +++ CAR + + ++ D + NALI G
Sbjct: 498 MVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556
Query: 159 YINNAHKVFEGSLAR------DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ--PDA 210
++ A V A D ++ L+ A + A +++ + + I+ P+
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNL---GCVGSNMLLKTAVINMYAKCGLMNMAE 267
+T ++C++ D F +Y ++ G + +A++++ G +
Sbjct: 617 YT--IAVNSCSQKGD----WDFALSIYDDMKKKGVKPDEVFF-SALVDV---AGHAGDLD 666
Query: 268 RVFSTM------GMSKSTAAWSSMISGYTREGKIERARQLFDQ---MDQRDLVS-WTAMI 317
+ F + G+ T ++SS++ + ++A +L++ + R VS A+I
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726
Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
+ + +ALE+ +M+ LG+ P+ +T +L A D G L Q
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDL 310
++S+ISGY + GK+E A +LF +M ++ +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLV 311
++++I G + G++E A +LF +M +R +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
V++ +I G + G +ALELF +M+ GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 7e-04
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 282 WSSMISGYTREGKIERARQLFDQM 305
++++I G R G+++ A +L D+M
Sbjct: 10 YNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 74 FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIV 105
+NTL+ G ++ +EAL L+ M +GI
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 74 FIWNTLMRGYSRSDSPQEALVLYTSMLSKGI 104
+N+L+ GY ++ +EAL L+ M KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
+N++I GL + G E ++ +F+EM+ G++PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
VT+ T++ G VEE + F+ M GI+P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
V+YN+LI+GY + + AL LF++M++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 719 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.23 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.22 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.15 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.15 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.03 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.99 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.98 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.92 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.88 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.87 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.87 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.83 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.83 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.64 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.64 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.63 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.56 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.45 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.35 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.34 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.32 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.27 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.2 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.18 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.14 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.13 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.02 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.86 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.81 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.81 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.65 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.65 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.63 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.6 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.55 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.48 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.46 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.43 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.35 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.34 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.29 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.27 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.25 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.24 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.21 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.2 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.19 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.16 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.14 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.1 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.09 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.05 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.02 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.98 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.92 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.9 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.87 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.82 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.8 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.7 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.68 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.63 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.6 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.56 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.47 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.39 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.39 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.34 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.28 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.26 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.11 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.09 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.08 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.06 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.96 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.76 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.71 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.57 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.52 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.43 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.29 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.27 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.21 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.19 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.19 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.08 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.94 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.86 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.81 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.32 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.27 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.9 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.76 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.67 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.44 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.38 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.36 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.32 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.12 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.09 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.02 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.83 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.72 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.56 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.28 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.07 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.77 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.62 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.42 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.26 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.13 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.94 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.46 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 90.41 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.41 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.28 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.8 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.71 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.99 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.59 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.58 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.42 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.39 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.89 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.66 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 86.36 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.78 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 84.61 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.4 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.08 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.74 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.65 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.61 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.39 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.97 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.55 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.45 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.08 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 80.19 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 80.12 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.02 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-132 Score=1149.36 Aligned_cols=703 Identities=36% Similarity=0.687 Sum_probs=678.2
Q ss_pred ccccccchHHHHHHhcc---ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHH
Q 047480 3 RLVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78 (719)
Q Consensus 3 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 78 (719)
|..|+..+|..++++|. .+..|.++|..+++.+..+ .+++|+|+++|++ + |+++.|+++|++|++||+++||+
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~--~-g~~~~A~~~f~~m~~~d~~~~n~ 157 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR--F-GELVHAWYVFGKMPERDLFSWNV 157 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh--C-CChHHHHHHHhcCCCCCeeEHHH
Confidence 45778888999999997 7899999999999999877 7899999999999 9 99999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047480 79 LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158 (719)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 158 (719)
+|.+|++.|++++|+++|++|...|+. ||.+||+.++++|+..++++.+.++|..+++.|+.||+.++|+|+.+|+++|
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~-Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVR-PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 047480 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238 (719)
Q Consensus 159 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 238 (719)
++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|+++|..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHHhcCChHHHHHHH-------------------------------HHc--------------
Q 047480 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVF-------------------------------STM-------------- 273 (719)
Q Consensus 239 ~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~-------------------------------~~~-------------- 273 (719)
. |+.||..+||+|+.+|+++|++++|.++| ++|
T Consensus 317 ~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 317 T--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred h--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 9 99999999999999998888855544443 333
Q ss_pred ------------------------CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047480 274 ------------------------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329 (719)
Q Consensus 274 ------------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 329 (719)
|+.|+..++|+||++|+++|++++|.++|++|.++|+++||++|.+|+++|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 34456667888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 330 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
+++|++|.. +++||..||++++.+|++.|+++.++++|. .+.+.|+.++..++|+||++|+|+|++++|.++|+.+ .
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~-~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA-HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH-HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 999999986 599999999999999999999999999999 8999999999999999999999999999999999999 5
Q ss_pred CCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHH
Q 047480 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYG 488 (719)
Q Consensus 410 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~ 488 (719)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|. ++|+.|+..+|+
T Consensus 552 --~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 552 --KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred --CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
+|+++|+|+|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+++++++++|+++..|+.|+++|+..|+|++
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccChhhhhHhh
Q 047480 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648 (719)
Q Consensus 569 A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~ 648 (719)
|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++|+.+|+++..+|++.||+||+..++ ++++++|+..+
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~ 788 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIF 788 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 55888999999
Q ss_pred hhhhHHHHHHHHhhcCCCCCcEEEeccccccCchhHHHHHHhhhcCceEEEecCCcccccCCCccCCCC
Q 047480 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717 (719)
Q Consensus 649 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 717 (719)
++||||||+|||||++|+|.||||+||||||+|||+++||||++++|+|||||.+|||||+||+|||+|
T Consensus 789 ~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 789 CGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-123 Score=1049.76 Aligned_cols=612 Identities=34% Similarity=0.602 Sum_probs=603.0
Q ss_pred CCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCC-CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHH
Q 047480 70 NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRN 148 (719)
Q Consensus 70 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 148 (719)
.++.++|+++|.+|.+.|++++|+++|+.|...+ .. ||..||+.++.+|.+.++++.|.++|..|.+.|+.||+.++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 3577899999999999999999999999999875 55 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH
Q 047480 149 ALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228 (719)
Q Consensus 149 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 228 (719)
.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 047480 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308 (719)
Q Consensus 229 a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 308 (719)
++++|..+.+. |+.+|..++|+||++|+++|++++|.++|++|.++
T Consensus 243 ~~~l~~~~~~~----------------------------------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 243 GQQLHCCVLKT----------------------------------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred HHHHHHHHHHh----------------------------------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 99999999999 99999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|. .+.+.|+.+|..++++||
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~-~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA-GLIRTGFPLDIVANTALV 367 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH-HHHHhCCCCCeeehHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
++|+++|++++|.++|++|.+ +|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 469 KQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 469 ~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
.++|+.|. ++|+.|+..+|++|+++|+++|++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 99999998 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcC
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g 627 (719)
++..+|..|+++|++.|+|++|.++++.|+++|+++.||+|||++++.+|.|.+||..||+.++|++++.++..+|++.|
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccChhhhhHhhhhhhHHHHHHHHhhcCCCCCcEEEeccccccCchhHHHHHHhhhcCceEEEecCCcccc
Q 047480 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707 (719)
Q Consensus 628 ~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~ 707 (719)
|+||+.+++||+++++|+..+++||||||+|||||++|+|.||||+||||||+|||+++||||++++|+|||||.+||||
T Consensus 606 y~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~ 685 (697)
T PLN03081 606 YVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHH 685 (697)
T ss_pred CCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCC
Q 047480 708 FKKGNCSCMDFW 719 (719)
Q Consensus 708 ~~~g~csc~~~~ 719 (719)
|+||+|||+|||
T Consensus 686 f~~g~csc~d~w 697 (697)
T PLN03081 686 FKLGKCSCGDYW 697 (697)
T ss_pred CCCCcccccccC
Confidence 999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-73 Score=656.91 Aligned_cols=668 Identities=22% Similarity=0.299 Sum_probs=580.9
Q ss_pred hHHHHHHhc---cChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccC----CCCCccHHHHHHH
Q 047480 10 SLLALLESC---KSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQI----DNPNIFIWNTLMR 81 (719)
Q Consensus 10 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~----~~~~~~~~~~li~ 81 (719)
.+..+++++ +.+++|..++..+.+.|+.+ ...++.++..+.+ . +.++.|.++++.+ +.++...+|++|.
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~--~-~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEW--K-RAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh--C-CCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 345555543 48999999999999999887 7889999999999 8 9999999999865 4578899999999
Q ss_pred HHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 047480 82 GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161 (719)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 161 (719)
+|++.|+.+.|+++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||.++|+.++..+++.++++
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999973 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCC----CCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 047480 162 NAHKVFEGSL----ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237 (719)
Q Consensus 162 ~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 237 (719)
.+.+++..|. .+|+.+||+||.+|++.|++++|.++|++|. .||..||++++.+|.+.|+.++|.+++..|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999988765 4799999999999999999999999999997 4899999999999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc---CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHH
Q 047480 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314 (719)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 314 (719)
+. |+.||..+|+.++.++++.|+.+.+.+++..+ |+.||..+||+|+++|+++|++++|.++|++|.++|+++||
T Consensus 281 ~~--g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 281 EL--SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred Hc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 98 99999999999999999999999999998888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+ .+.+.|+.++..++++||++|+++
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~-~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE-LAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH-HHHHhCCCcchHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
|++++|.++|++|.+ +|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.++.+.+++..
T Consensus 438 g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 438 KCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999 9999999999999999999999999999986 5999999999999999999999999999999
Q ss_pred HHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCchh
Q 047480 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LEPDHGAH 552 (719)
Q Consensus 475 m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~ 552 (719)
+.+.|+.++..++++|+++|+++|++++|.++|+++ +||.++|++++.+|.++|+.++|.++|++|.+ ..|+ ..+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T 591 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVT 591 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-ccc
Confidence 999999999999999999999999999999999999 78999999999999999999999999999987 5565 578
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHH-hCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccC
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMD-DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~ 631 (719)
|..++.+|++.|++++|.++|+.|. +.|+.|.... + ...+ ......+..+ +..+.++++++.||
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-y---~~lv----~~l~r~G~~~-------eA~~~~~~m~~~pd 656 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-Y---ACVV----DLLGRAGKLT-------EAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-H---HHHH----HHHHhCCCHH-------HHHHHHHHCCCCCC
Confidence 9999999999999999999999999 6788664421 0 0001 1111122333 33344455579999
Q ss_pred CCccccccChhhhhHhhhhhhHHHH-HHHHhhcCCCCCcEEEeccccccCchhHHHHHHhhhcCceEEE-------ecCC
Q 047480 632 TVQVVFDVDEEEKETVVSYHSEKLA-LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMV-------RDAI 703 (719)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-------~d~~ 703 (719)
...|..-+..+...+-+.. .|+.+ ..+.+.+..++.-+.+..-....|+..++.+....|..+.+.- --.+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 657 PAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 8877655555533222211 12222 2334444434433333333456788899988888776663221 1125
Q ss_pred cccccCCCccC
Q 047480 704 RFHLFKKGNCS 714 (719)
Q Consensus 704 ~~h~~~~g~cs 714 (719)
..|-|..|--|
T Consensus 736 ~~~~f~~~d~~ 746 (857)
T PLN03077 736 KVHAFLTDDES 746 (857)
T ss_pred EEEEEecCCCC
Confidence 67888766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=587.24 Aligned_cols=505 Identities=17% Similarity=0.246 Sum_probs=436.8
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCcc-----HHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIF-----IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~ 113 (719)
...+..+++.|++ + |++++|.++|+.|+.++.. .++.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 370 ~~~~~~~y~~l~r--~-G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 370 SPEYIDAYNRLLR--D-GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred chHHHHHHHHHHH--C-cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 3567777888888 8 8899999999988775544 445667778888888999988888863 8888999
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC----CCChhhHHHHHHHHHcCC
Q 047480 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL----ARDLVSYNTLINGYAQVK 189 (719)
Q Consensus 114 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 189 (719)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999988888999999999999999999999999998887 478889999999999999
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047480 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269 (719)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~ 269 (719)
++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+..
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~----------------------------- 572 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET----------------------------- 572 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-----------------------------
Confidence 999999999999888888998999999988888888888888888887620
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCCh
Q 047480 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345 (719)
Q Consensus 270 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 345 (719)
.|+.||..+|++||++|+++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 573 ---~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 573 ---HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred ---CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 06788999999999999999999999999999875 56689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHH
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISG 423 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~ 423 (719)
.||+.++.+|++.|++++|.++|. .+.+.|+.|+..+|++||++|+++|++++|.++|++|... .||+.+||+||.+
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~-eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQ-DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999 8888999999999999999999999999999999998643 5899999999999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH----hcC-
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA----RDG- 498 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g- 498 (719)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..+|++|++++. +++
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~ 808 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643 222
Q ss_pred ------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCchhHHHH
Q 047480 499 ------------------RLDEAYGLIQSM---PYDANSVIWRALLAACRLHRNAKIGEIAGQKLL-DLEPDHGAHYVLL 556 (719)
Q Consensus 499 ------------------~~~eA~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l 556 (719)
..++|..+|++| ++.||..+|++++.++...+..+.+..+++.+. .-.+.+..+|..|
T Consensus 809 l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~L 888 (1060)
T PLN03218 809 LGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTL 888 (1060)
T ss_pred hhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHH
Confidence 246799999999 688999999999977777788888888887654 2344556789999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCCc
Q 047480 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPG 586 (719)
Q Consensus 557 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 586 (719)
++.+.+. .++|..++++|.+.|+.|...
T Consensus 889 i~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 889 VDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9987332 368999999999999987654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-65 Score=572.79 Aligned_cols=439 Identities=28% Similarity=0.454 Sum_probs=417.6
Q ss_pred ccccccchHHHHHHhcc---ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHH
Q 047480 3 RLVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78 (719)
Q Consensus 3 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 78 (719)
+..|+..+|..++.+|. +++.+.++|..+.+.|+.+ .+++|.|+++|++ + |++++|+++|++|++||.++||+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k--~-g~~~~A~~lf~~m~~~~~~t~n~ 194 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK--C-GMLIDARRLFDEMPERNLASWGT 194 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc--C-CCHHHHHHHHhcCCCCCeeeHHH
Confidence 45678889999999997 7899999999999999988 8999999999999 9 99999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047480 79 LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158 (719)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 158 (719)
+|.+|++.|++++|+++|++|.+.|+. ||..||+.++.+|++.|..+.+.++|..+.+.|+.+|..++|+|+++|+++|
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 047480 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238 (719)
Q Consensus 159 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 238 (719)
++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|+++|..+.+
T Consensus 274 ~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 047480 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318 (719)
Q Consensus 239 ~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 318 (719)
. |+.||..++|+||++|+++|++++|.++|++|.++|+++||+||.
T Consensus 354 ~----------------------------------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 354 T----------------------------------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred h----------------------------------CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 9 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 047480 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398 (719)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 398 (719)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.+..+.++.|+..+|+.++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999955566899999999999999999999999
Q ss_pred HHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 399 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
+|.++|++++.. |+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+
T Consensus 480 eA~~~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 480 EAYAMIRRAPFK-PTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999998754 8888899999999999999999999888864 4565 45888888899999999999999999888
Q ss_pred cCCcc
Q 047480 478 YGIKP 482 (719)
Q Consensus 478 ~g~~p 482 (719)
.|+..
T Consensus 557 ~g~~k 561 (697)
T PLN03081 557 KGLSM 561 (697)
T ss_pred cCCcc
Confidence 88753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=561.86 Aligned_cols=494 Identities=15% Similarity=0.221 Sum_probs=404.4
Q ss_pred HHHHHHhc---cChHHHHHHHHHHHHhCCCh--hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHc
Q 047480 11 LLALLESC---KSLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85 (719)
Q Consensus 11 ~~~~l~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 85 (719)
+..++..| ++++.|.++++.|.+.|+.+ ...++.++..|.+ . |.+++|.++|+.|+.||..+||.+|.+|++
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~-g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--Q-RAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--C-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 44444444 69999999999999999654 5677889999999 8 999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHH
Q 047480 86 SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165 (719)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 165 (719)
.|++++|+++|++|.+.|+. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCC----CCChhhHHHHHHHHHcCCCcchHHHHHHHHHH--CCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 047480 166 VFEGSL----ARDLVSYNTLINGYAQVKEPCPALWLFRKMQD--SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239 (719)
Q Consensus 166 ~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 239 (719)
+|++|. .||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|+++.|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999985 47999999999999999999999999999986 689999999999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHH
Q 047480 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTA 315 (719)
Q Consensus 240 ~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~ 315 (719)
++.|+..+|+.+|.+|++.|++++|.++|++|.+ ||.++|++
T Consensus 609 ----------------------------------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 609 ----------------------------------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred ----------------------------------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 6666666666666666666666666666666653 56666666
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 395 (719)
+|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|+ .+.+.++.||..+||+||++|++.|
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~-eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE-DIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 666666666666666666666666666666666666666666666666666666 5555666666666666666666666
Q ss_pred ChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------------
Q 047480 396 SIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH------------ 461 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------------ 461 (719)
++++|.++|++|... .||..+|++++.+|++.|+.++|.++|.+|.+.|+.||..+|++++..|.+
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 666666666666543 566666777777777777777777777777766677776666666654331
Q ss_pred -----------cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHH
Q 047480 462 -----------GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP---YDANSVIWRALLAACR 527 (719)
Q Consensus 462 -----------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~---~~p~~~~~~~ll~~~~ 527 (719)
.+..++|..+|++|.+.|+.||..+|+.++.++.+.+..+.+..+++.|. ..|+..+|++|+.+|.
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 12346799999999999999999999999998889999999999998884 5567889999999984
Q ss_pred hcCChhHHHHHHHHHhcc
Q 047480 528 LHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~ 545 (719)
+. .++|..+++++.+.
T Consensus 894 ~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASL 909 (1060)
T ss_pred cC--hHHHHHHHHHHHHc
Confidence 32 36899999998763
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=321.18 Aligned_cols=551 Identities=13% Similarity=0.018 Sum_probs=425.1
Q ss_pred HHHhccChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCch
Q 047480 14 LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQ 90 (719)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 90 (719)
++...++++.|...+..+++........+..+...+.+ . |++++|...++.+.. .+...|+.+...+.+.|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR--L-GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--C-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH
Confidence 34445688999999998888776556667778888888 7 999999998887643 35567888888999999999
Q ss_pred HHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC
Q 047480 91 EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170 (719)
Q Consensus 91 ~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 170 (719)
+|.+.|+++.+.. |.+...+..+...+...|+++.|.+.+..+.+.. +........++..|.+.|++++|.++++.+
T Consensus 381 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 381 KAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999988765 2355567777777888889999999888888765 234455667778888888888888888876
Q ss_pred CC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCch
Q 047480 171 LA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247 (719)
Q Consensus 171 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 247 (719)
.. .+..+|+.+...|...|++++|...|+++.+.. +.+...+..+...+...|+++.|.+.+..+.+. .+.+.
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 533 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNL 533 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcH
Confidence 53 356788888888888888888888888887643 233445666777778888888888888888776 46677
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 047480 248 LLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQ 322 (719)
Q Consensus 248 ~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 322 (719)
.++..+...|.+.|+.++|...++++ ..+.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|..
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 78888888888888888888888887 3345566777888888888888888888887764 456678888888888
Q ss_pred cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047480 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402 (719)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 402 (719)
.|++++|+..|+++.+.. +.+...+..+..++...|+.++|..++. .+.+.. +.+...+..++..+.+.|++++|.+
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK-RALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887653 3355667777788888888888888888 444332 4556777888888888888888888
Q ss_pred HHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc
Q 047480 403 VFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481 (719)
Q Consensus 403 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 481 (719)
+++.+... +.+...|..+...+...|++++|++.|+++.+. .|+..++..+..++.+.|++++|.+.++.+.+.. +
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~ 767 (899)
T TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-P 767 (899)
T ss_pred HHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 88887665 456667777888888888888888888888774 4555667777778888888888888888887532 3
Q ss_pred cChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
.+...+..+...|.+.|++++|.+.|+++ . .+++..+++.+...+...|+ ++|+..+++++++.|+++..+..++.+
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 45777778888888888888888888876 2 23456677777777878887 778888888888888888888888888
Q ss_pred HhhcCChHHHHHHHHHHHhCCC
Q 047480 560 LAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
|...|++++|.++++++.+.+.
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=319.77 Aligned_cols=544 Identities=12% Similarity=0.026 Sum_probs=377.3
Q ss_pred cChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHH
Q 047480 19 KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVL 95 (719)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 95 (719)
++++.|...+..+++.+......+-.+...|.. . |+++.|...|+.... .+...+..+...+.+.|++++|+..
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~--~-g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQ--L-GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH--c-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777777777776664432222233445555 5 777777777776532 2344566677777777778888777
Q ss_pred HHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---
Q 047480 96 YTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA--- 172 (719)
Q Consensus 96 ~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--- 172 (719)
++++.... |.+...+..+...+...|++++|.+++..+.+.. +.+...+..+...|...|++++|.+.|+....
T Consensus 352 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 352 LSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 77777655 2455667777777777777777777777777654 34556667777777777777777777766443
Q ss_pred CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHH
Q 047480 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252 (719)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~ 252 (719)
.+...+..++..+.+.|++++|+.+++.+... .+++..++..+...+...|+.+.|.+.+..+.+. .+.+...+..
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~ 504 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI---EPDFFPAAAN 504 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCcHHHHHH
Confidence 23345566677777777777787777777653 3445566777777777777777777777777765 4555666777
Q ss_pred HHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 047480 253 VINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFS 327 (719)
Q Consensus 253 li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 327 (719)
+...+...|++++|...++++ ..+.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|...|+++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 777777777777777777776 3344566777777777777777777777777643 34456667777777777788
Q ss_pred HHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
+|+.+++++.... +.+..++..+..++...|++++|...+. .+.+.. +.+...+..+...|.+.|++++|...|+++
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFK-KLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887777776542 4456677777777777777777777777 333322 345566677777777777888887777776
Q ss_pred CCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhH
Q 047480 408 PKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486 (719)
Q Consensus 408 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 486 (719)
... +.+..+|..++..+...|++++|.++++.+.+.. +++...+..+...+...|++++|.+.|+.+... .|+...
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 738 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQN 738 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchH
Confidence 554 4556677777777777778888887777777653 344556666777777777788887777777753 345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (719)
+..+..++.+.|++++|.+.++++ . .+.+..++..+...|...|+.++|...++++++..|+++..+..++.++...|
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 667777777778877777777766 2 22355566666667777777788888887777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhC
Q 047480 565 RWEEARQVRKLMDDS 579 (719)
Q Consensus 565 ~~~~A~~~~~~m~~~ 579 (719)
+ ++|..+++++.+.
T Consensus 819 ~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 819 D-PRALEYAEKALKL 832 (899)
T ss_pred c-HHHHHHHHHHHhh
Confidence 7 7777777777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-32 Score=226.91 Aligned_cols=106 Identities=59% Similarity=1.003 Sum_probs=97.3
Q ss_pred cccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccChhhh--------hHhhhhhhHHHHH
Q 047480 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK--------ETVVSYHSEKLAL 657 (719)
Q Consensus 586 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 657 (719)
|+||+++ |.|.+|+.+||+. ++..++...||.|++....|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899876 9999999999998 455667788999999999998888766 5688999999999
Q ss_pred HHHhhcCCCCCcEEEeccc-cccCchhHHHHHHhhhcCceEEEecCCcccccC
Q 047480 658 AFGLINSRSKETIRITKNL-RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709 (719)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 709 (719)
|||++++ ||+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-23 Score=245.27 Aligned_cols=543 Identities=10% Similarity=0.017 Sum_probs=321.5
Q ss_pred ChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--CCccH-H----------------HHHH
Q 047480 20 SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFI-W----------------NTLM 80 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~-~----------------~~li 80 (719)
+.+.+++....++...+..+.+...+...+.+ . |+.++|.+.+++..+ |+... + ..+.
T Consensus 43 ~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~--~-g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 43 REDLVRQSLYRLELIDPNNPDVIAARFRLLLR--Q-GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--C-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 77888888888877776666667777888888 7 999999999998754 43322 1 2334
Q ss_pred HHHHcCCCchHHHHHHHHhHhCCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047480 81 RGYSRSDSPQEALVLYTSMLSKGIVSPNNFT-FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159 (719)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 159 (719)
..+.+.|++++|++.|+++.+.. ||+... ...........++.++|...++.+++.. +.+...+..|..++...|+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 46888999999999999998766 244321 1111222234688999999999999886 5567788899999999999
Q ss_pred hhHHHHHHccCCCCCh------hhH-----------------HHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHH
Q 047480 160 INNAHKVFEGSLARDL------VSY-----------------NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216 (719)
Q Consensus 160 ~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 216 (719)
.++|+..|+++..... ..| ...+..+-.....+.|...+.++......|+... ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHH
Confidence 9999999987643211 111 1111111112222334444444333222222211 111
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCch---HHH----------
Q 047480 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKST---AAW---------- 282 (719)
Q Consensus 217 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~---~~~---------- 282 (719)
-.++...|+++.|...++.+++. .|.+..++..|...|.+.|++++|...|++. ...|+. ..|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 23344566677777777666664 4455666666667777777777777666665 222221 111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH---
Q 047480 283 --SSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA--- 354 (719)
Q Consensus 283 --~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--- 354 (719)
..+...+.+.|++++|...|++..+ .+...+..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 1223345566677777777766653 234455566666667777777777776666542 1122333333333
Q ss_pred ---------------------------------------HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047480 355 ---------------------------------------CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 355 ---------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 395 (719)
+...|+.++|.+.++ ...+.. +.+..++..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-QRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 333444444444444 222211 123334444444455555
Q ss_pred ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCcH
Q 047480 396 SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV---------TFVTVLCACSHGGLV 465 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~ 465 (719)
++++|...|+++... +.+...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 555555555444332 2233333333333344444444444444432211111111 112233445556666
Q ss_pred HHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 466 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
++|.++++. .+++...+..+.+.|.+.|++++|++.+++. ...| +...+..+...+...|+.++|+..++++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666666551 2344556677788888888888888888876 3344 56677788888888888888888888888
Q ss_pred ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+..|+++..+..++.++...|++++|.++++.+....
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888888888888888887654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-21 Score=231.31 Aligned_cols=547 Identities=13% Similarity=0.042 Sum_probs=399.9
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCC--C-CccHHHHHHHHHHcCCCc
Q 047480 14 LLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDN--P-NIFIWNTLMRGYSRSDSP 89 (719)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 89 (719)
++..-++.++|.+.+..+++..... .....-+...... . |+.++|.+.|+++.. | +...+..+...+...|++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~--~-g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKL--P-AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhC--C-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 4445568999999999988775544 2211111222233 4 889999999998864 4 445678888999999999
Q ss_pred hHHHHHHHHhHhCCCC---------------CCCcc---cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 047480 90 QEALVLYTSMLSKGIV---------------SPNNF---TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151 (719)
Q Consensus 90 ~~A~~~~~~m~~~g~~---------------~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 151 (719)
++|+..++++.+.... +++.. .+...+..+........+...+....+....|+. ....+.
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~-~~~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF-RARAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch-HHHHHH
Confidence 9999999998764310 00000 1111122222222334455555544433323332 223445
Q ss_pred HHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC-ChhhHH------------H
Q 047480 152 HFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP-DAFTFV------------A 215 (719)
Q Consensus 152 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~------------~ 215 (719)
..+...|++++|+..|++... .+...+..|...|.+.|++++|+..|++..+..-.. +...+. .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 667789999999999987543 377889999999999999999999999988753221 111111 1
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcC
Q 047480 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREG 293 (719)
Q Consensus 216 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g 293 (719)
.-..+...|++++|...++.+++. .|.+...+..+...|...|++++|.+.+++. .. +.+...+..+...|. .+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQV---DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Confidence 233466889999999999999987 5667788889999999999999999999998 44 344567777888775 46
Q ss_pred CHHHHHHHHhhcCCCC------------hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC-ChhHHHHHHHHHHccCC
Q 047480 294 KIERARQLFDQMDQRD------------LVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVLRACVGLGA 360 (719)
Q Consensus 294 ~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~ 360 (719)
+.++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+...|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999998876421 123555677888999999999999999876 44 45567788889999999
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC--Chh---------cHHHHHHHHHhCCC
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK--TVS---------LFNSIISGLAQHGL 429 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--~~~---------~~~~li~~~~~~g~ 429 (719)
.++|...+++.+... +.+......+...+.+.|+.++|...++.++.... +.. .+..+...+...|+
T Consensus 511 ~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999544333 34455555566667889999999999999875311 111 12345667889999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
.++|+++++. .+++...+..+...+.+.|++++|...|+.+.+.. +.+...+..++.+|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999872 23445567778888999999999999999999643 33478889999999999999999999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch------hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 510 MP-YDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA------HYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 510 ~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.. ..| +...+..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|...++....
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 73 445 4556777777888999999999999999998776543 566779999999999999999998864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-19 Score=203.52 Aligned_cols=537 Identities=10% Similarity=0.015 Sum_probs=302.7
Q ss_pred cChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--CCccHHHHHHHHHHcCCCchHHHHHH
Q 047480 19 KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFIWNTLMRGYSRSDSPQEALVLY 96 (719)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 96 (719)
++..+|...+..+++..+....++..|...|.+ . |+.++|+..+++... |+-.-|..++..+ +++.+|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~--~-g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRH--F-GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--C-CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 488899999999999988778888999999999 8 999999999988754 4333333333333 7888888888
Q ss_pred HHhHhCCCCCCC-cccH---------------------------------------HHH-HHHHhccCCcHHHHHHHHHH
Q 047480 97 TSMLSKGIVSPN-NFTF---------------------------------------PFV-LNSCARLSSFKSGCQIHCHI 135 (719)
Q Consensus 97 ~~m~~~g~~~p~-~~~~---------------------------------------~~l-l~~~~~~~~~~~a~~~~~~~ 135 (719)
+++.... |+ ..++ ... .+.|...++++++..++..+
T Consensus 132 e~l~~~~---P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ---KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC---CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 8887765 32 2222 122 44455566667777777777
Q ss_pred HHhCCCCChhHHHHHHHHHHh-cCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCC-CChhhH
Q 047480 136 IKFGLEFDLFIRNALIHFYSI-FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ-PDAFTF 213 (719)
Q Consensus 136 ~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~ 213 (719)
.+.+ +.+......|..+|.. .++ ++|..+++...+.|...+..+...|.+.|+.++|.++++++...-.. |+..++
T Consensus 209 ~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 7766 3344445556566666 355 66766666544457778888899999999999999998887654222 444333
Q ss_pred HHHHH------------------------------HHhccCCcHHHHHHH-----------------------------H
Q 047480 214 VAMFS------------------------------ACTELNDPRIGKQFH-----------------------------A 234 (719)
Q Consensus 214 ~~ll~------------------------------a~~~~~~~~~a~~i~-----------------------------~ 234 (719)
.-.+. .+.+.++++.++++. .
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 32221 222222222222221 1
Q ss_pred HHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCC----CchHHHHHHHHHHHhcCCH---HHHHHHHh---
Q 047480 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMS----KSTAAWSSMISGYTREGKI---ERARQLFD--- 303 (719)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~----~~~~~~~~li~~y~~~g~~---~~A~~~f~--- 303 (719)
.+.+. .+.+....-.+.-...+.|+.++|.++++.. ... .+....+-|+..|.+.+.+ ..+..+-.
T Consensus 367 ~~y~~---~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 367 LLYQQ---EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHhc---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 11110 1112222233333344455566666666665 111 1233444566666665552 22222211
Q ss_pred ----------------------hcCC---C--ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH
Q 047480 304 ----------------------QMDQ---R--DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356 (719)
Q Consensus 304 ----------------------~m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 356 (719)
.... + +...|..+..++.. ++.++|+..|.+.... .|+......+..++.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH
Confidence 0000 1 33445555555544 5666666655555543 344433333344445
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHH
Q 047480 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 435 (719)
..|++++|...+. .+... +++...+..+...+.+.|+.++|...|++.... +.+...+..+.......|++++|+.
T Consensus 521 ~~Gr~eeAi~~~r-ka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQ-KISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHH-HHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 5666666666666 23222 222233444555566666666666666655442 1222222222223333466666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047480 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYD 513 (719)
Q Consensus 436 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 513 (719)
.|++..+ ..|+...+..+..++.+.|++++|...++..... .|+ ...+..+...+...|++++|++.+++. ...
T Consensus 598 ~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 598 DLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6666665 2455555666666666666666666666666643 233 455555666666666666666666654 333
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 514 A-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 514 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
| +...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-++..-..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 34456666666666666666666666666666666666666666666666666666655554433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-21 Score=191.76 Aligned_cols=467 Identities=13% Similarity=0.109 Sum_probs=329.1
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 047480 60 RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139 (719)
Q Consensus 60 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 139 (719)
...+-|+..++-+.. -..|..-..+.|++.+|.+.....-+.. |.+......+-..+.+..+++...+--...++..
T Consensus 36 ~v~qq~~~t~~~~~~-~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~ 112 (966)
T KOG4626|consen 36 SVLQQFNKTHEGSDD-RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN 112 (966)
T ss_pred HHHHHhccCCccchh-HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc
Confidence 344445554443322 4456666778899999999887766665 2344455555555666666666655444444443
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHH
Q 047480 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216 (719)
Q Consensus 140 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 216 (719)
+.-..+|..+.+.+-..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-
T Consensus 113 -~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 113 -PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred -chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcc
Confidence 44567888899999999999999999998665 3678899999999999999999999988876 46776655443
Q ss_pred HHH-HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 047480 217 FSA-CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295 (719)
Q Consensus 217 l~a-~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 295 (719)
+.- ....|.+.+|...+..+++. .+-= ..+|+.|...+...|++
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~---qp~f--------------------------------AiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIET---QPCF--------------------------------AIAWSNLGCVFNAQGEI 234 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhh---CCce--------------------------------eeeehhcchHHhhcchH
Confidence 332 34467888888888877775 1111 23455555555555555
Q ss_pred HHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC-ChhHHHHHHHHHHccCChHHHHHHHHHH
Q 047480 296 ERARQLFDQMDQRD---LVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVLRACVGLGALDFGKRLHQQY 371 (719)
Q Consensus 296 ~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 371 (719)
..|..-|++...-| ...|-.|...|...+.+++|+..|.+.... .| ..+.+..+...|...|.++.|...+++.
T Consensus 235 ~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykra 312 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRA 312 (966)
T ss_pred HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHH
Confidence 55555555554322 224555555555666666666666555543 33 2344555555556666666666666632
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-
Q 047480 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG- 449 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 449 (719)
+... +.-...|+.|..++-..|++.+|.+.|.+.... +.-..+.+.|...|...|..++|..+|....+ +.|.-
T Consensus 313 l~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~a 388 (966)
T KOG4626|consen 313 LELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFA 388 (966)
T ss_pred HhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhh
Confidence 2221 122445666777777777777777777766554 34456788888888889999999999888877 56765
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAAC 526 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~ 526 (719)
..++.|...|-+.|++++|...|++.++ +.|+ ...|+.|...|...|+.++|.+.+.+. .+.|. ....+.|...+
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 4788888889999999999999998886 7788 788999999999999999999999876 56664 45788899999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
...|++.+|+..++.+++++||.+.+|-.++..+.--..|.+-.+.+++
T Consensus 467 kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999998888777777764433333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-19 Score=201.85 Aligned_cols=500 Identities=13% Similarity=0.017 Sum_probs=351.8
Q ss_pred CChHHHHHHhccCCC--C-CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHH
Q 047480 56 NGLFRSRILFSQIDN--P-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132 (719)
Q Consensus 56 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 132 (719)
|++++|...|+...+ | +..++..+...|.+.|++++|+..+++..+.. |+...|..++... ++.++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhHHHHH
Confidence 999999999998754 3 45678899999999999999999999999887 7666666655333 8889999999
Q ss_pred HHHHHhCCCCChhHHHHHHHH--------HHhcCChhHHHHHHccCCCC--Chh-hHHHHHHHHHcCCCcchHHHHHHHH
Q 047480 133 CHIIKFGLEFDLFIRNALIHF--------YSIFGYINNAHKVFEGSLAR--DLV-SYNTLINGYAQVKEPCPALWLFRKM 201 (719)
Q Consensus 133 ~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m 201 (719)
+++++.. +.+..++..+... |.+.+...++++ .+...+ +.. ..-.+...|.+.|++++|++++.++
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999987 4556666666665 888877777777 333333 333 3444489999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHhc-cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCC----C
Q 047480 202 QDSCIQPDAFTFVAMFSACTE-LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM----S 276 (719)
Q Consensus 202 ~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~----~ 276 (719)
.+.+.. +..-...+-.++.. .++ +.+..++.. ....+..+..++++.|.+.|+.++|...++++.. .
T Consensus 209 ~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~------~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 209 RQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ------GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch------hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 987632 23334445556665 355 555555331 3446788888999999999987777766666510 0
Q ss_pred CchHH---------------------------------------------------------------------------
Q 047480 277 KSTAA--------------------------------------------------------------------------- 281 (719)
Q Consensus 277 ~~~~~--------------------------------------------------------------------------- 281 (719)
|+..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 11111
Q ss_pred ------------------HHHHHHHHHhcCCHHHHHHHHhhcCC--C----ChhhHHHHHHHHHhcCC---hhHHHHH--
Q 047480 282 ------------------WSSMISGYTREGKIERARQLFDQMDQ--R----DLVSWTAMISGYSQVGG---FSQALEL-- 332 (719)
Q Consensus 282 ------------------~~~li~~y~~~g~~~~A~~~f~~m~~--~----~~~~~~~li~~~~~~g~---~~~A~~~-- 332 (719)
.--+.-...+.|+.++|.++|++... + +...-+-++..|..++. ..+++.+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 11111112234455555555555433 1 11123345555555544 2333222
Q ss_pred --------------------HHHhHh-cCC-CC--ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 333 --------------------FGKMES-LGI-HP--DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 333 --------------------~~~m~~-~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
...... .+. ++ +...+..+..++.. +..++|...+.+..... |+......+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA 516 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVA 516 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHH
Confidence 111111 111 22 34444555544444 67778888776444443 4444344445
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEE 467 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 467 (719)
..+...|++++|...|+++...+++...+..+...+.+.|+.++|...|++..+.. |+.. .+..+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 55678999999999999877655556667788888999999999999999998753 5443 34444445566799999
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
|...+++.++ +.|+...|..+..++.+.|++++|++.+++. ...|+ ...+..+..++...|+.++|+..+++++++
T Consensus 595 Al~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 595 ALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999986 3577889999999999999999999999987 45664 556777777899999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+|+++..+..++.+|...|++++|...+++..+..
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-19 Score=176.31 Aligned_cols=361 Identities=11% Similarity=0.110 Sum_probs=293.0
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCchHH-HHHHHH
Q 047480 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAA-WSSMIS 287 (719)
Q Consensus 210 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~~~-~~~li~ 287 (719)
..+|..+.+.+...|+++.|...+..+++. -+..+..|..+..++...|+.+.|...+.+. .+.|+... .+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 345555666666666666666666666654 3445566666666777777777766666555 66777654 344556
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHH
Q 047480 288 GYTREGKIERARQLFDQMDQ--R-DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD-EVTMVAVLRACVGLGALDF 363 (719)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~ 363 (719)
.....|++++|..-+.+..+ | -.+.|+.|...+-.+|+...|+..|++.... .|+ ...|..+-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 66678999999998887664 3 3468999999999999999999999999874 454 3578888999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
|...+...+... +....++..+...|-..|.++-|...|++..+. +.-...||.|..++-..|+..+|++.|.+...
T Consensus 271 Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 998887333322 234566667778899999999999999998876 44466899999999999999999999999987
Q ss_pred cCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HH
Q 047480 443 MGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-VI 518 (719)
Q Consensus 443 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~ 518 (719)
+.|+. .+.+.|...+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|+.-+++. .++|+. ..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 46776 4889999999999999999999999886 5566 678899999999999999999999987 788864 58
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
++.+...|...|+++.|.+.+.++++.+|.-..++..|+.+|...|+..+|+.-++...+...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999999999886543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-17 Score=182.94 Aligned_cols=420 Identities=12% Similarity=-0.001 Sum_probs=277.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcc
Q 047480 147 RNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD-AFTFVAMFSACTEL 223 (719)
Q Consensus 147 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~ 223 (719)
+..+...|.+.|++++|.+.|++... |+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 34556666677777777777766332 45566667777777777777777777776653 343 33555566666777
Q ss_pred CCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 047480 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303 (719)
Q Consensus 224 ~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (719)
|+++.|..-+..+... ....+... ..++..+........+...++.. +++...+..+.. |......+.+..-++
T Consensus 208 g~~~eA~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 208 GKYADALLDLTASCII--DGFRNEQS-AQAVERLLKKFAESKAKEILETK--PENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCccHHH-HHHHHHHHHHHHHHHHHHHHhcC--CCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 7777776666554443 11111111 11111111111112222222221 122222222222 222111111111111
Q ss_pred hcCCCCh---hhHHHHHHH---HHhcCChhHHHHHHHHhHhcC-CCC-ChhHHHHHHHHHHccCChHHHHHHHHHHHHHc
Q 047480 304 QMDQRDL---VSWTAMISG---YSQVGGFSQALELFGKMESLG-IHP-DEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375 (719)
Q Consensus 304 ~m~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 375 (719)
...+.+. ..+..+... ....+++++|++.|++....+ ..| +...+..+...+...|++++|...+. .....
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~-kal~l 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS-KSIEL 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHc
Confidence 1111111 111111111 123468999999999998764 334 34567777777888999999999999 44443
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHH
Q 047480 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFV 453 (719)
Q Consensus 376 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 453 (719)
. +.....+..+...|...|++++|...|++.... +.+...|..+...+...|++++|+..|++..+. .|+ ...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 3 344667788889999999999999999987665 567889999999999999999999999999985 565 45777
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHH
Q 047480 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-V-------IWRALLA 524 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~-------~~~~ll~ 524 (719)
.+...+.+.|++++|...|+..++.. +.+...+..+..+|...|++++|++.|++. ...|+. . .++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 78888999999999999999998632 334788999999999999999999999885 344421 1 1222222
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.+...|++++|+..++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444699999999999999999999989999999999999999999999998754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=185.29 Aligned_cols=310 Identities=14% Similarity=0.118 Sum_probs=197.0
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh
Q 047480 80 MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD---LFIRNALIHFYSI 156 (719)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~ 156 (719)
...+...|++++|+..|+++.+.+ |.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 444567788888888888888876 23445677777778888888888888888776542221 2456777777788
Q ss_pred cCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHH
Q 047480 157 FGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233 (719)
Q Consensus 157 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 233 (719)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.|+.+...+..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 8888888888877654 3556777777777778888888777777765432111100
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 047480 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDL 310 (719)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~ 310 (719)
....+..+...|.+.|++++|.+.|+++.+ .+.
T Consensus 179 --------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 179 --------------------------------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred --------------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 011233444555566666666666665543 233
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
..+..+...|.+.|++++|++.|+++...+......++..+..++...|+.++|.+.+. .+.+.. |+...+..++..
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~-~~~~~~--p~~~~~~~la~~ 291 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR-RALEEY--PGADLLLALAQL 291 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC--CCchHHHHHHHH
Confidence 45666667777777777777777777654322223445566666666666666666666 333322 344444666777
Q ss_pred HHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 047480 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ---HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (719)
|.+.|++++|..+|+++....|+...++.++..+.. .|+.++++.++++|.+.+++|+.. ..|.+.|..
T Consensus 292 ~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 292 LEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 777777777777777655544666677776666553 457777777777777766666655 235555543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=182.60 Aligned_cols=294 Identities=11% Similarity=0.065 Sum_probs=203.2
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC---hhHHHHHHHHHHccCCh
Q 047480 288 GYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD---EVTMVAVLRACVGLGAL 361 (719)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 361 (719)
.+...|++++|...|.++.+ .+..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34555666666666666653 2333566666666666666666666666665321111 13455556666666677
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCC------hhcHHHHHHHHHhCCChhHHHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT------VSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~ 435 (719)
+.|..++. .+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+....++ ...|..+...+.+.|++++|+.
T Consensus 124 ~~A~~~~~-~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFL-QLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHH-HHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 77776666 333321 344556677777777777777777777776543111 1235566777888888889999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047480 436 VFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD 513 (719)
Q Consensus 436 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 513 (719)
.|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+.+.......+..++.+|.+.|++++|.+.++++ ...
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888874 344 44677777888888999999999988885432222456788888999999999999998887 456
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh---cCChHHHHHHHHHHHhCCCCCCCc
Q 047480 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE---TYRWEEARQVRKLMDDSGIQKPPG 586 (719)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 586 (719)
|+...+..+...+...|+.++|...++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7776777788888999999999999999999999875 44444444432 568999999999999988888885
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-16 Score=166.53 Aligned_cols=543 Identities=12% Similarity=0.069 Sum_probs=386.0
Q ss_pred ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCC--C----CCccHHHHHHHHHHcCCCchHH
Q 047480 20 SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQID--N----PNIFIWNTLMRGYSRSDSPQEA 92 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~--~----~~~~~~~~li~~~~~~g~~~~A 92 (719)
+++.|.+.|..+++..+.. +++...---+|.| +++..|...|.... . ||+. -.+..++.+.|+.+.|
T Consensus 145 ~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk----kdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPDNILALLGKARIAYNK----KDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKA 218 (1018)
T ss_pred cHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc----ccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhH
Confidence 4677888888888877665 5555544456676 89999999998842 1 3432 2333556688999999
Q ss_pred HHHHHHhHhCCCCCCCc-ccHHHHHHHH---hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHc
Q 047480 93 LVLYTSMLSKGIVSPNN-FTFPFVLNSC---ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168 (719)
Q Consensus 93 ~~~~~~m~~~g~~~p~~-~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 168 (719)
+..|.+.++.. |+. .++..|.-.- .....+..|.+++..+-+.. ..++.+.+.|.+.|.-.|+++.+..+.+
T Consensus 219 ~~a~~ralqLd---p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 219 LLAFERALQLD---PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred HHHHHHHHhcC---hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 99999999877 432 2322222111 12345667777777766655 6788899999999999999999998887
Q ss_pred cCCCCC------hhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhH--HHHHHHHhccCCcHHHHHHHHHHHHhh
Q 047480 169 GSLARD------LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF--VAMFSACTELNDPRIGKQFHAVVYKNL 240 (719)
Q Consensus 169 ~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a~~i~~~~~~~~ 240 (719)
.+...+ ..+|--+.++|-..|++++|...|.+-.. ..||.+++ .-+-+.+...|+++.+...|+.+.+.
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~- 371 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ- 371 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-
Confidence 765432 23577788999999999999999977665 34665444 44667788999999999999999987
Q ss_pred CCCCCchHHHHHHHHHHHhcC----ChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--------
Q 047480 241 GCVGSNMLLKTAVINMYAKCG----LMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMD-------- 306 (719)
Q Consensus 241 ~~~~~~~~~~~~li~~y~~~g----~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------- 306 (719)
.|.+..+...|...|...+ ..+.|..++.+. ..+.|...|-.+..+|-...-+. +..+|....
T Consensus 372 --~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 372 --LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGK 448 (1018)
T ss_pred --CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCC
Confidence 7777888888888888876 456677777665 44566777877777776544332 244443322
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc---CCCCCh-----h-HHHHHHHHHHccCChHHHHHHHHHHHHHcCC
Q 047480 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESL---GIHPDE-----V-TMVAVLRACVGLGALDFGKRLHQQYIENVVF 377 (719)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 377 (719)
.......|.+...+...|++++|...|.+.... ...+|. . +-..+.......++.+.|.+.+.+.+.+..
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp- 527 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP- 527 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-
Confidence 245567888888899999999999999988754 223333 2 223344555667789999999994444332
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHH
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTV 455 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l 455 (719)
.-+..|--+..+....+...+|...+..+... ..++..|+-+...|.....+..|.+-|+...+. ...+|..+..+|
T Consensus 528 -~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 528 -GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred -hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 11222222333333346777888888877654 567778888888888888888888877766543 234677777777
Q ss_pred HHHHhc------------cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 047480 456 LCACSH------------GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRA 521 (719)
Q Consensus 456 l~a~~~------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ 521 (719)
.+.|.. .+..++|+++|.+.++.. +.+...-+.+.-.++..|++.+|.++|.+.. ...+..+|-.
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 775543 245678888888888643 4457777888889999999999999998873 2235678889
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcc--CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDL--EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
+...|...|++-.|+++|+..+.. ..+++.....|+.++.+.|+|.+|.+.........+
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999988763 345667888999999999999999988887776443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-16 Score=164.06 Aligned_cols=559 Identities=13% Similarity=0.051 Sum_probs=405.3
Q ss_pred ccchHHHHHHhcc-----ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHH
Q 047480 7 EHSSLLALLESCK-----SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80 (719)
Q Consensus 7 ~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 80 (719)
+.+.++.+.++|. ++..+...+..++...+.. +-+.-.+-..+++ + |+.+.|...|....+-|...-++++
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k--l-~~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWK--L-GMSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh--c-cchhhHHHHHHHHHhcChhhHHHHH
Confidence 3445666778886 7889999999877665443 2221122245677 8 9999999999998775554444444
Q ss_pred HHHH---c---CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC--hhHHHHHHH
Q 047480 81 RGYS---R---SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD--LFIRNALIH 152 (719)
Q Consensus 81 ~~~~---~---~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~ 152 (719)
.... . ...+..++.++...-..+ +-|+...+.|.+-+.-.|++..+..+...++....... ...|--+..
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3221 1 234556777777766655 35778888899999999999999999999987753211 234566889
Q ss_pred HHHhcCChhHHHHHHccCCC--C-C-hhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChh-hHHHHHHHHhccC---
Q 047480 153 FYSIFGYINNAHKVFEGSLA--R-D-LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAF-TFVAMFSACTELN--- 224 (719)
Q Consensus 153 ~y~~~g~~~~A~~~f~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~--- 224 (719)
+|-..|++++|...|-+... + + +..+--|...|.+.|+.+.+...|+..... .||.. |...+-..|+..+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhh
Confidence 99999999999999976443 2 2 445667889999999999999999999874 45544 5555555555553
Q ss_pred -CcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCCh------HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 047480 225 -DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM------NMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297 (719)
Q Consensus 225 -~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~------~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 297 (719)
..+.|..+.....+. .+.|...|-.+..+|....-+ ..|...+...+-.+.+.+.|.+...+...|.++.
T Consensus 394 ~~~d~a~~~l~K~~~~---~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQ---TPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred HHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 456666666666665 688888999888888776664 4455556555666889999999999999999999
Q ss_pred HHHHHhhcCC-------CChh------hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhH-HHHHHHHHHccCChHH
Q 047480 298 ARQLFDQMDQ-------RDLV------SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT-MVAVLRACVGLGALDF 363 (719)
Q Consensus 298 A~~~f~~m~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~ 363 (719)
|...|+.... +|.. +-..+...+-..++++.|.+.|+...+. .|+-+. |..++...-..+...+
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHH
Confidence 9999987653 2221 2223455666778999999999999886 565543 3333322234467788
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHh------------CC
Q 047480 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQ------------HG 428 (719)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~------------~g 428 (719)
|...+. .+.... ..++.+++-+.+.|.+...+..|.+-|+.+... .+|+.+.-+|.+.|.+ .+
T Consensus 549 a~~~lk-~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 549 ASLLLK-DALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHH-HHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 888887 333332 466677777888999999999998877666543 2455555555554443 24
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
..++|+++|.+.++.. +-|...-+.+.-.++..|.+.+|..+|.+..+.. .....+|-.+..+|..+|++..|+++|+
T Consensus 627 ~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 5778999999888752 3355677788888899999999999999999654 2356678889999999999999999998
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh-------------------hcCC
Q 047480 509 SM----PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA-------------------ETYR 565 (719)
Q Consensus 509 ~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-------------------~~g~ 565 (719)
.. -.+.+..+...|..++...|.+.+|...+..++.+.|.++..-+.++-... ..+.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~ 784 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE 784 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 76 223477788889999999999999999999999999999876665554443 2356
Q ss_pred hHHHHHHHHHHHhCCC
Q 047480 566 WEEARQVRKLMDDSGI 581 (719)
Q Consensus 566 ~~~A~~~~~~m~~~~~ 581 (719)
.++|.++|..|...+-
T Consensus 785 le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 785 LEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7888999999987654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-16 Score=173.52 Aligned_cols=253 Identities=12% Similarity=0.035 Sum_probs=192.7
Q ss_pred cCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHHH
Q 047480 292 EGKIERARQLFDQMDQR------DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD-EVTMVAVLRACVGLGALDFG 364 (719)
Q Consensus 292 ~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 364 (719)
.+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46778888888776532 3446777778888888899999888888765 444 45677777788888889999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 047480 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443 (719)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 443 (719)
...+.+ +.+.. +.+..++..+...|...|++++|...|++.... +.+...|..+...+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~-al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDK-ALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHH-HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888884 44332 455678888888999999999999999887765 556778888888999999999999999998874
Q ss_pred CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChh------HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047480 444 GLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME------HYGCMVDLLARDGRLDEAYGLIQSM-PYDAN 515 (719)
Q Consensus 444 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~ 515 (719)
.|+ ...+..+...+...|++++|...|+......-..+.. .++.....+...|++++|.+++++. ...|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455 4678888888999999999999999988532111111 1222223344579999999999885 55564
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 516 -SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 516 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
...+..+...+...|++++|...++++.++.+...
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 45788888889999999999999999999887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-15 Score=173.49 Aligned_cols=403 Identities=8% Similarity=-0.003 Sum_probs=241.9
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC-hhhHHHHH
Q 047480 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD-AFTFVAMF 217 (719)
Q Consensus 142 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll 217 (719)
.+.....-.+.+....|+.++|++++.+... .+...+..+...+...|++++|..+|++..+. .|+ ...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444444555666677888888887776543 23445777777788888888888888877653 333 34445555
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCC-chHHHHHHHHHHHhcCCH
Q 047480 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSK-STAAWSSMISGYTREGKI 295 (719)
Q Consensus 218 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~-~~~~~~~li~~y~~~g~~ 295 (719)
..+...|+.++|...++.+++. .|.+.. +..+...+...|+.++|...+++. ...| +...+..+...+.+.|..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 5666777777777777777665 344444 555555556666666666665555 2222 333444455555555555
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH-----ccCCh---HHHHHH
Q 047480 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV-----GLGAL---DFGKRL 367 (719)
Q Consensus 296 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~~~~---~~a~~~ 367 (719)
+.|.+.++.... +...... + . .......+.... ..+.+ +.|.+.
T Consensus 167 e~Al~~l~~~~~-~p~~~~~-l------------------------~--~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRD-L------------------------E--ADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHH-H------------------------H--HHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 555555555443 1100000 0 0 000000111110 11112 444555
Q ss_pred HHHHHHHcCCCCChh--HHHHH---HHHHHhcCChHHHHHHHhcCCCCCCChh--cHHHHHHHHHhCCChhHHHHHHHHH
Q 047480 368 HQQYIENVVFGRNIF--LTTAV---IDMYAKCGSIDTALSVFYKIPKNLKTVS--LFNSIISGLAQHGLGETSIAVFREM 440 (719)
Q Consensus 368 ~~~~~~~~~~~~~~~--~~~~l---i~~y~k~g~~~~A~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 440 (719)
++.++......|+.. ...+. +-++...|++++|.+.|+.+....++.. .-..+...|...|++++|+..|+++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 542322212122211 11111 1233455788888888888766421111 1122456778888888888888887
Q ss_pred HHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-----------CccC---hhHHHHHHHHHHhcCCHH
Q 047480 441 ELMGLKPD-----GVTFVTVLCACSHGGLVEEGKQFFESMLNYG-----------IKPQ---MEHYGCMVDLLARDGRLD 501 (719)
Q Consensus 441 ~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-----------~~p~---~~~~~~li~~~~~~g~~~ 501 (719)
.+. .|. ......+..++...|++++|.++++.+.... -.|+ ...+..+..++...|+++
T Consensus 299 l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 299 FYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred hhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 653 222 2345555667778888888888888777431 0122 234556777888889999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|++.++++ ...| +...+..+...+...|+.++|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999988886 2334 56678888888888899999999999999999998888888888888999999999998888765
Q ss_pred C
Q 047480 580 G 580 (719)
Q Consensus 580 ~ 580 (719)
.
T Consensus 457 ~ 457 (765)
T PRK10049 457 E 457 (765)
T ss_pred C
Confidence 3
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-16 Score=173.11 Aligned_cols=352 Identities=11% Similarity=-0.003 Sum_probs=214.8
Q ss_pred hcCChhHHHHHHccCCCC------ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH
Q 047480 156 IFGYINNAHKVFEGSLAR------DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229 (719)
Q Consensus 156 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 229 (719)
+..+++.---+|..-++. +..-..-++..+.+.|++++|+.+++........+.. .+..+..+....|+.+.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 556666666666655542 2233444566677777777777777777665333222 233333444456777777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 047480 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-- 307 (719)
Q Consensus 230 ~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-- 307 (719)
...++.+.+. .|. +...+..+...+.+.|++++|...|++..+
T Consensus 96 ~~~l~~~l~~---~P~--------------------------------~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~ 140 (656)
T PRK15174 96 LQVVNKLLAV---NVC--------------------------------QPEDVLLVASVLLKSKQYATVADLAEQAWLAF 140 (656)
T ss_pred HHHHHHHHHh---CCC--------------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777776665 222 334455555555555666666665555543
Q ss_pred -CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHH
Q 047480 308 -RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386 (719)
Q Consensus 308 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 386 (719)
.+...|..+...+.+.|++++|...++++.... |+.......+..+...|++++|...+. .+.+....++......
T Consensus 141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~-~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLAR-ALLPFFALERQESAGL 217 (656)
T ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCcchhHHHH
Confidence 233455555566666666666666666554432 222111111223455566666666665 3322221122233344
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHh
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGET----SIAVFREMELMGLKPDG-VTFVTVLCACS 460 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 460 (719)
+...+.+.|+.++|...|++.... +.+...+..+...|.+.|++++ |+..|++..+. .|+. ..+..+...+.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 455666777777777777776554 4556677777777888887775 77888887763 4554 47777777888
Q ss_pred ccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCChhHHHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRA-LLAACRLHRNAKIGEI 537 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~-ll~~~~~~g~~~~a~~ 537 (719)
..|++++|...+++..+. .|+ ...+..+..+|.+.|++++|.+.++++ ...|+...+.. +..++...|+.++|..
T Consensus 296 ~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888887753 344 556667778888888888888888776 34565544333 4455778888888888
Q ss_pred HHHHHhccCCCCc
Q 047480 538 AGQKLLDLEPDHG 550 (719)
Q Consensus 538 ~~~~~~~~~p~~~ 550 (719)
.++++++..|++.
T Consensus 374 ~l~~al~~~P~~~ 386 (656)
T PRK15174 374 VFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHhChhhc
Confidence 8888888888753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-15 Score=167.81 Aligned_cols=407 Identities=10% Similarity=-0.031 Sum_probs=233.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC---CCCChhhHHHHHHHHHcC
Q 047480 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS---LARDLVSYNTLINGYAQV 188 (719)
Q Consensus 112 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~ 188 (719)
..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++. ...+...+..++..+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3334444445555555555555554422 233334555555555555555555555552 222344455555556666
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHH
Q 047480 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268 (719)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~ 268 (719)
|++++|+..+++..+. .|+...+..+..++...|+.+.|...++.+.+. .|.+..++..+...+...+..+.|..
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 6666666666665543 232222444455555666666666666666654 44455555666777777777888887
Q ss_pred HHHHcCCCCchH------HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHhHhc
Q 047480 269 VFSTMGMSKSTA------AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF---SQALELFGKMESL 339 (719)
Q Consensus 269 ~~~~~~~~~~~~------~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~ 339 (719)
.+++....|+.. ....++..+...+ ....+++ ++|++.++.+.+.
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~--------------------------~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPT--------------------------RSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccc--------------------------cChhHHHHHHHHHHHHHHHHHhh
Confidence 777664344310 1111111111000 0111112 4555555555532
Q ss_pred -CCCCChh-HHHH----HHHHHHccCChHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 047480 340 -GIHPDEV-TMVA----VLRACVGLGALDFGKRLHQQYIENVVFG-RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412 (719)
Q Consensus 340 -g~~p~~~-t~~~----ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~ 412 (719)
...|+.. .+.. .+.++...++.++|...++ .+.+.+.+ |+. ....+...|...|++++|...|+++....|
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~-~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ-RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH-HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 1122111 1110 1223344456666666666 33333211 111 112245566677777777777766544312
Q ss_pred C-----hhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHHH
Q 047480 413 T-----VSLFNSIISGLAQHGLGETSIAVFREMELMG-----------LKPDG---VTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 413 ~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
. ...+..+..++.+.|++++|.++++++.+.. -.|+. ..+..+...+...|++++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2234455556777778888887777777541 12342 234556667888999999999999
Q ss_pred HHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 474 SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 474 ~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
++.... +.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+..++++++..|+++.
T Consensus 384 ~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 384 ELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 998532 334778888999999999999999999987 45675 456666666788889999999999999999999875
Q ss_pred hH
Q 047480 552 HY 553 (719)
Q Consensus 552 ~~ 553 (719)
+.
T Consensus 463 ~~ 464 (765)
T PRK10049 463 VQ 464 (765)
T ss_pred HH
Confidence 43
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-15 Score=167.92 Aligned_cols=315 Identities=10% Similarity=0.021 Sum_probs=170.6
Q ss_pred HHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccC
Q 047480 149 ALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA-FTFVAMFSACTELN 224 (719)
Q Consensus 149 ~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 224 (719)
.++....+.|++++|..+++.... .+...+..++.+....|++++|+..|+++... .|+. ..+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 345566788999999999987643 35566777778888899999999999999874 4544 45666667778889
Q ss_pred CcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCc-hHHHHHHHHHHHhcCCHHHHHHHH
Q 047480 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKS-TAAWSSMISGYTREGKIERARQLF 302 (719)
Q Consensus 225 ~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~-~~~~~~li~~y~~~g~~~~A~~~f 302 (719)
+.+.|...+..+.+. .|.+...+..+...|...|+.++|...++++ ...|+ ...+..+ ..+.+.|++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l---~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLA---FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999998888876 3444555555555555555555555555544 22222 1222222 2244455555555555
Q ss_pred hhcCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCC
Q 047480 303 DQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378 (719)
Q Consensus 303 ~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 378 (719)
+.+.+. +...+..+...+.+.|++++|+..|+++.... +
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-------------------------------------p 243 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-------------------------------------L 243 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------------------------C
Confidence 544331 11122233344445555555555555554432 2
Q ss_pred CChhHHHHHHHHHHhcCChHH----HHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDT----ALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTF 452 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~----A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 452 (719)
.+..++..+..+|...|++++ |...|++.... +.+...+..+...+...|++++|+..+++..+. .|+. ...
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 233334444444444454443 44444444333 233444555555555555555555555554442 2332 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
..+..++...|++++|...|+.+... .|+. ..+..+..++...|+.++|.+.+++.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444445555555555555554432 2222 12222334445555555555555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-14 Score=161.65 Aligned_cols=435 Identities=11% Similarity=-0.000 Sum_probs=213.7
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhh-HHHH--HHHHHcCCCcchHH
Q 047480 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS-YNTL--INGYAQVKEPCPAL 195 (719)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~l--i~~~~~~g~~~~A~ 195 (719)
..+.|+++.|...+.++++........++ .++..+...|+.++|+..+++...++... +..+ ...|...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 35677888888888888776522212344 77777777788888888887766553333 3333 44666678888888
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-
Q 047480 196 WLFRKMQDSCIQPD-AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM- 273 (719)
Q Consensus 196 ~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~- 273 (719)
++|+++.+.. |+ ...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|+..++++
T Consensus 123 ely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 123 ALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER----DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888887643 33 344445556666777777777777766654 233333344444444445554566666666
Q ss_pred CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHH
Q 047480 274 GM-SKSTAAWSSMISGYTREGKIERARQLFDQMDQR-DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351 (719)
Q Consensus 274 ~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 351 (719)
.. +.+...+..++....+.|-...|.++..+-+.- +...+.-+ . .+.|.+..+. +..|+..-
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~vr~----a~~~~~~~---- 260 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQVRM----AVLPTRSE---- 260 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHHHhh----cccccccc----
Confidence 33 334556666666666666666666666654420 00000000 0 0000000000 00000000
Q ss_pred HHHHHccCChHHHHHHHHHHHHHcCCCCC-hhH-HHHH---HHHHHhcCChHHHHHHHhcCCCCCC--ChhcHHHHHHHH
Q 047480 352 LRACVGLGALDFGKRLHQQYIENVVFGRN-IFL-TTAV---IDMYAKCGSIDTALSVFYKIPKNLK--TVSLFNSIISGL 424 (719)
Q Consensus 352 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-~~~l---i~~y~k~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~ 424 (719)
-.+..-.+.+..-++.++...+-.|. ... ..+. +-++.+.|+..++.+.|+.+..... ...+--++.++|
T Consensus 261 ---~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 ---TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ---hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 00000112222222211221111111 111 1122 2233445555555555555553211 112333445555
Q ss_pred HhCCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-----------ccC---hh
Q 047480 425 AQHGLGETSIAVFREMELMG-----LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-----------KPQ---ME 485 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-----------~p~---~~ 485 (719)
...+++++|+.+|++..... ..++......|.-++...+++++|..+++.+.+... .|+ ..
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 55555555555555554321 011112234455555555555555555555553100 011 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
.+..++..+.-.|++.+|++.++++ ..-| |...+..+...++..|+..+|+..++.+..++|++..+...++..+...
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 2333445555556666666665555 1222 4455555555555566666666666555555666555555666666666
Q ss_pred CChHHHHHHHHHHHhC
Q 047480 564 YRWEEARQVRKLMDDS 579 (719)
Q Consensus 564 g~~~~A~~~~~~m~~~ 579 (719)
|+|++|..+.+.+.+.
T Consensus 498 ~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 498 QEWHQMELLTDDVISR 513 (822)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 6666665555555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-13 Score=152.18 Aligned_cols=451 Identities=8% Similarity=-0.019 Sum_probs=307.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 047480 76 WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF-TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154 (719)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 154 (719)
|...| ...+.|++..|++.|++..+.. |+.. ....++..+...|+.++|...++..+... .........+...|
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG---PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC---ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 44444 3568999999999999999887 6642 33378888888899999999999988111 22233344446688
Q ss_pred HhcCChhHHHHHHccCCCC---ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 047480 155 SIFGYINNAHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231 (719)
Q Consensus 155 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (719)
...|++++|.++|+++.+. |...+..++..|...++.++|++.+++.... .|+...+..++..+...++...|.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 8999999999999987653 5667778889999999999999999999874 5676666555444545566666999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 047480 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311 (719)
Q Consensus 232 i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~ 311 (719)
.++.+.+. .|.+...+..++....+.|-...|.++..+. |+.++-...... +.+.|.+..+.-..++..
T Consensus 191 ~~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 191 ASSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKEN---PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC---ccccCHHHHHHH-----HHHHHHHHHhhccccccc
Confidence 99999987 6788899999999999999999999998875 222211111110 011222222111100000
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhc-CCCCCh-hH----HHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESL-GIHPDE-VT----MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (719)
.-. +---.+.|+.-++.+... +-.|.. .- ..-.+-++...++..++...++ .+...+.+.-..+-.
T Consensus 260 ----~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~-~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 260 ----ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE-AMEAEGYKMPDYARR 331 (822)
T ss_pred ----chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH-HhhhcCCCCCHHHHH
Confidence 000 000124445555554431 111221 11 1123445566677777777776 566555444445666
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-------------C
Q 047480 386 AVIDMYAKCGSIDTALSVFYKIPKN-------LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-------------L 445 (719)
Q Consensus 386 ~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~ 445 (719)
++.++|...++.++|..+|..+... +++......|.-+|...+++++|..+++++.+.- .
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 7777777777777777777766432 1123334667778888888888888888887631 1
Q ss_pred CCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 047480 446 KPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRAL 522 (719)
Q Consensus 446 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l 522 (719)
.||-. .+..+...+...|++.+|++.++.+.... +-|......+.+++...|.+.+|++.++.. ...|+ ..+....
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 22333 34445667888999999999999998543 456888999999999999999999999876 35665 4456666
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
..+....+++++|..+.+.+.+..|+++.+-
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 7778888999999999999999999987443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-12 Score=129.25 Aligned_cols=497 Identities=12% Similarity=0.115 Sum_probs=395.0
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 151 (719)
++..|-.. +.....+.|.-++.+..+-- |.+ .-|.-++++...++.|+.++..+.+. ++.+..+|.+-.
T Consensus 379 sv~LWKaA----VelE~~~darilL~rAvecc---p~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 379 SVRLWKAA----VELEEPEDARILLERAVECC---PQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred hHHHHHHH----HhccChHHHHHHHHHHHHhc---cch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 34446543 34456666887887777644 322 23455667777788888888877654 466777777666
Q ss_pred HHHHhcCChhHHHHHHccCC--------CCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC--hhhHHHHHHHHh
Q 047480 152 HFYSIFGYINNAHKVFEGSL--------ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD--AFTFVAMFSACT 221 (719)
Q Consensus 152 ~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~ 221 (719)
..=-..|..+...++.++.. .-|...|-.=...+-..|..-.+..+....+..|+.-. ..||..--..|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 66667788888887776522 12455676666777777777777777777777666543 358888888999
Q ss_pred ccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHH
Q 047480 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERAR 299 (719)
Q Consensus 222 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~ 299 (719)
+.+.++-++.+|..+++. ++.+..+|...+..--..|..+....+|++. ..+.....|-....-+-..|++..|+
T Consensus 528 k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999986 8899999999999999999999999999998 56667778888888888999999999
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcC
Q 047480 300 QLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376 (719)
Q Consensus 300 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 376 (719)
.++.+.-+ .+...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..--.++..++|.+++++.+...
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f- 681 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF- 681 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-
Confidence 99988765 35567888888899999999999999998874 6777777766666667889999999998555443
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047480 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455 (719)
Q Consensus 377 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 455 (719)
+.-...|..+.+.|-+.++++.|.+.|..-... |..+..|-.+...--+.|+.-.|..+|++.+-.+ +-|...|...
T Consensus 682 -p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~ 759 (913)
T KOG0495|consen 682 -PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLES 759 (913)
T ss_pred -CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHH
Confidence 345567888899999999999999999887766 5566689888888888999999999999988763 3456789999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 535 (719)
+..=.+.|..++|..+..++++. ++.+...|.--|.+..+.++-..+.+.+++... |+.+.-++...+....+++.|
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988842 456678899899999999988888888888754 555555666667778899999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEE
Q 047480 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 592 (719)
...|+++++.+|++..+|..+-..+...|.-++-.++++...... |..|-.|+.+
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 999999999999999999999999999999999999999887643 5667777654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-12 Score=124.52 Aligned_cols=244 Identities=16% Similarity=0.191 Sum_probs=145.6
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 151 (719)
+..++..||.++++--..+.|.++|++-.....+ .+..+|+.++.+-. +..++.+..+|+.....||.+++|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 4445666666666666666666666666655554 56666666665543 222355666666666666666666666
Q ss_pred HHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH-HH
Q 047480 152 HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI-GK 230 (719)
Q Consensus 152 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~-a~ 230 (719)
+..++.|+++.|++ .|++++.+|++-|+.|...+|..+|..+.+.++... +.
T Consensus 281 ~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 66666666666553 457788999999999999999999998888877644 44
Q ss_pred HHHHHHHHhhCC--CCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 047480 231 QFHAVVYKNLGC--VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ- 307 (719)
Q Consensus 231 ~i~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~- 307 (719)
.+...+.....| +.| .-+.|...+..-++.+....+.+-|.++-.-...
T Consensus 334 ~~i~dI~N~ltGK~fkp----------------------------~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKP----------------------------ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred HHHHHHHHhhccCcccC----------------------------CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 444444433222 111 1112233344444444444555555444433321
Q ss_pred -------C---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcC
Q 047480 308 -------R---DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376 (719)
Q Consensus 308 -------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 376 (719)
+ ...-|..+....++....+.-+.+|+.|...-+-|+..+...++++....+.++-..+++. .....|
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~-D~~~~g 463 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWK-DSKEYG 463 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHH-HHHHhh
Confidence 1 1123444555566666677777777777766666677777777777777777766666666 444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=134.59 Aligned_cols=469 Identities=13% Similarity=0.120 Sum_probs=303.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHH-HHHHHHhccCCcHHHHHHHHHHHHhCCCCC----hhHHHHHHH
Q 047480 78 TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP-FVLNSCARLSSFKSGCQIHCHIIKFGLEFD----LFIRNALIH 152 (719)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~ 152 (719)
.|.+-|..+....+|+..|+-+.+.... ||.-.+- .+.+.+.+.+.+..|..+++.++..-...+ ..+.+.+.-
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 4556677778889999999998888777 7765432 344556778889999999988876542222 234455555
Q ss_pred HHHhcCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHH--------HHHHHHhc
Q 047480 153 FYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV--------AMFSACTE 222 (719)
Q Consensus 153 ~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--------~ll~a~~~ 222 (719)
.+.+.|++++|..-|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||...|. .++.-..+
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 67788999999999987543 566554445555666788899999999998755444444331 11111111
Q ss_pred cC--------CcHHHHHHHHHHHHh-hCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCC-CCchHHHHHHHHHHHhc
Q 047480 223 LN--------DPRIGKQFHAVVYKN-LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM-SKSTAAWSSMISGYTRE 292 (719)
Q Consensus 223 ~~--------~~~~a~~i~~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~-~~~~~~~~~li~~y~~~ 292 (719)
.. +-..|++..-...+. .+-+.||-.. | .+-.++.++.... +.-...-..-..-|.+.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 10 011111111111111 0001111100 0 0111111111100 00000011112347889
Q ss_pred CCHHHHHHHHhhcCCCChhhHH----HHH-HHHHhcC-ChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHH
Q 047480 293 GKIERARQLFDQMDQRDLVSWT----AMI-SGYSQVG-GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366 (719)
Q Consensus 293 g~~~~A~~~f~~m~~~~~~~~~----~li-~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 366 (719)
|+++.|.+++.-...+|..+-. .+- --|.+-| ++.+|.+.-+...... +-|....+.--+.....|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 9999999988887765544322 222 2233333 4666666655554322 2233333333333445789999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 047480 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445 (719)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 445 (719)
.+. ......-.-...+|| +.-.+-+.|++++|++.|-++... ..++...-.+.+.|-...++..|++++.+... +
T Consensus 512 ~yk-eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--l 587 (840)
T KOG2003|consen 512 FYK-EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--L 587 (840)
T ss_pred HHH-HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--c
Confidence 998 444333222222233 334577899999999999876544 36777777888889999999999999977665 4
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 047480 446 KPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALL 523 (719)
Q Consensus 446 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll 523 (719)
.|+ ...+.-|...|-+.|+-.+|.+.+-.--++ ++-+.++...|...|....-+++|+.+|++. -++|+.+-|..++
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 554 567888888999999999999987654433 4556889999999999999999999999998 4789999999999
Q ss_pred HHH-HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 524 AAC-RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 524 ~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
..| ++.|++++|+..++......|.+....-.|..++...|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 886 677999999999999999999999989999999988885
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-11 Score=126.85 Aligned_cols=543 Identities=12% Similarity=0.111 Sum_probs=362.3
Q ss_pred HHHhccChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccC---CCCCccHHHHHHHHHHcCCCch
Q 047480 14 LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI---DNPNIFIWNTLMRGYSRSDSPQ 90 (719)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~ 90 (719)
.+-+-++++.|..+...+++..+..+..|-.|...|-. . |+.+++...+-.. ...|..-|-.+-....+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq--r-Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ--R-GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--c-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 34444689999999999998876667778888888888 7 9998888766433 3345577888888888899999
Q ss_pred HHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHH----HHHHHhcCChhHHHHH
Q 047480 91 EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL----IHFYSIFGYINNAHKV 166 (719)
Q Consensus 91 ~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L----i~~y~~~g~~~~A~~~ 166 (719)
+|.-.|.+.++.. |++-..+---...|-+.|+...|..-+.++.....+.|..-.-.+ +..|...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998877 355445555566677889999999988888877643333323333 4455566777888888
Q ss_pred HccCCC--C---ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhH----------------------H----H
Q 047480 167 FEGSLA--R---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF----------------------V----A 215 (719)
Q Consensus 167 f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~----------------------~----~ 215 (719)
++.-.. . +...+|.++..|.+...++.|......+......+|..-+ . -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 876543 2 4456889999999999999999998888762222222211 1 1
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc---CCCCchHHHHHHHHHHHhc
Q 047480 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTRE 292 (719)
Q Consensus 216 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~---~~~~~~~~~~~li~~y~~~ 292 (719)
+.-++.+....+....+.....+.......+...+.-+.++|...|++..|+.++..+ ....+..+|--+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223445666777777777777762224556778999999999999999999999998 2233477999999999999
Q ss_pred CCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhHh--------cCCCCChhHHHHHHHHHHccCCh
Q 047480 293 GKIERARQLFDQMDQRDL---VSWTAMISGYSQVGGFSQALELFGKMES--------LGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 293 g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
|..+.|...|+.+..-+. ..--+|-+.+.+.|+.++|++.+..+.. .+..|+..........+.+.|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999998876333 3344566778999999999999998642 23445555555566667777776
Q ss_pred HHHHHHHH----HHHHHcCCCC-----------------ChhHHHHHHHHHHhcCChHHHHHHHhcC------CCCCCCh
Q 047480 362 DFGKRLHQ----QYIENVVFGR-----------------NIFLTTAVIDMYAKCGSIDTALSVFYKI------PKNLKTV 414 (719)
Q Consensus 362 ~~a~~~~~----~~~~~~~~~~-----------------~~~~~~~li~~y~k~g~~~~A~~~~~~~------~~~~~~~ 414 (719)
++=..+-. ....+.-+.| .......++.+-.+.++.....+-...- ....-+.
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 65333332 1111111111 1122223344444444432222211111 0000122
Q ss_pred hcH----HHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHH--HH-HHHHHHHhccCcHHHHHHHHHHHH-HcCCccC-
Q 047480 415 SLF----NSIISGLAQHGLGETSIAVFREMELMGL--KPDGV--TF-VTVLCACSHGGLVEEGKQFFESML-NYGIKPQ- 483 (719)
Q Consensus 415 ~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~- 483 (719)
.-| .-++..+++.++.++|+.+...+.+... .++.. .+ ...+.++...+++..|..+++.|. ..+...+
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 223 4567788999999999999988887532 22221 22 344566778999999999999998 4333323
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 484 --MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAA--CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 484 --~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
...|++..+...+.|+-.--.+++... ..+|+..-...++.| ....+.+.-|...+-++....|++|-+-.+++-
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 456776667777777655555555544 333443223333333 455678888999999999999999988777777
Q ss_pred HHh
Q 047480 559 MLA 561 (719)
Q Consensus 559 ~~~ 561 (719)
++.
T Consensus 783 afi 785 (895)
T KOG2076|consen 783 AFI 785 (895)
T ss_pred HHH
Confidence 664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-12 Score=121.03 Aligned_cols=416 Identities=15% Similarity=0.181 Sum_probs=250.7
Q ss_pred cHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHH--HhccCCcHHH-HHHHHHHHHhCCCCChhHHHHH
Q 047480 74 FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS--CARLSSFKSG-CQIHCHIIKFGLEFDLFIRNAL 150 (719)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~L 150 (719)
++=|+|+.. ...|...++.-+|+.|.+.|+. .+...-..+++. |-...++--+ .+-|-.|.+.| +.+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 344555553 4567888888888888888864 554444444332 2222332221 22333333333 2222222
Q ss_pred HHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHH
Q 047480 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230 (719)
Q Consensus 151 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 230 (719)
+.|.+.+ ++-+...+...++..||.|.++.-..+.|.+++++-.....+.+..+||.+|.+.+ +..++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 3344433 44444555778999999999999999999999999999889999999999998754 33448
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHH----HHHHc---CCCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 047480 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER----VFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFD 303 (719)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~----~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (719)
.+..+|+.. ...||..++|++++...+.|+++.|.+ ++.+| |+.|...+|..+|..+++.++..+
T Consensus 259 ~Lv~EMisq--km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k------ 330 (625)
T KOG4422|consen 259 KLVAEMISQ--KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK------ 330 (625)
T ss_pred HHHHHHHHh--hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh------
Confidence 889999988 677777777777777777776655332 22222 677777776666666655555433
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHh----HhcCCC---C-ChhHHHHHHHHHHccCChHHHHHHHHHHHHHc
Q 047480 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKM----ESLGIH---P-DEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375 (719)
Q Consensus 304 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~---p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 375 (719)
-|..++.+. ..+..+ | |..-|.+.+..|.++.+.+.|.++++ .....
T Consensus 331 ------------------------~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~-ll~tg 385 (625)
T KOG4422|consen 331 ------------------------VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHG-LLKTG 385 (625)
T ss_pred ------------------------hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHH-HHHcC
Confidence 122222222 112222 3 45567888899999999999999998 44432
Q ss_pred -C---CCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 047480 376 -V---FGRN---IFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446 (719)
Q Consensus 376 -~---~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (719)
+ +.++ .+.|..+.++.+....++.-...|+.|... .|+..+-.-++.+..-.|.++-.-+++..|+..|-.
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 1 1222 345667888888888899999999988765 566666777777888888888887888887776633
Q ss_pred CCHHHHHHHHHHHhccC--------------------cHHHHH-HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHH
Q 047480 447 PDGVTFVTVLCACSHGG--------------------LVEEGK-QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505 (719)
Q Consensus 447 p~~~t~~~ll~a~~~~g--------------------~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 505 (719)
-+...-.-++.-.++.. ++.++. .--.++.+ ........++..-++.|.|+.++|.+
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHH
Confidence 33332222222222221 001110 01111221 23445566677777777777777777
Q ss_pred HHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047480 506 LIQSM-------PYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542 (719)
Q Consensus 506 ~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (719)
++.-. +..|......-+..+..+.++.-.|..+++-+
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 76543 22232222233344444444444444444444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-10 Score=113.57 Aligned_cols=496 Identities=12% Similarity=0.097 Sum_probs=315.2
Q ss_pred ccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 73 IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
...|-....--...+++..|.++|++.+.... .+...|..-+..=.+...+..|+.+++.++..-...| ..|-.-+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 33444444444455666677777777665432 2333444444444456666777777777665532222 23333444
Q ss_pred HHHhcCChhHHHHHHccCC--CCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHH
Q 047480 153 FYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230 (719)
Q Consensus 153 ~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 230 (719)
|=-..|++..|+++|++-. +|+...|++.|..-.+.+.++.|..++++..- +.|+..+|.--.+.=.+.|....++
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 4445577777777777632 46777777777777777777777777777665 3477777766666666677777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCc--hHHHHHHHHHHHhcCCHHHHHHHH----
Q 047480 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKS--TAAWSSMISGYTREGKIERARQLF---- 302 (719)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~--~~~~~~li~~y~~~g~~~~A~~~f---- 302 (719)
+++..+++..+.-..+...+++....-..+..++.|..+++-. .++.+ ...|..+...=.+.|+...-....
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 7777777664333334455666666666666666666665544 22332 455666666656666654443332
Q ss_pred ----hhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCCh--h-----HHHHHHHHH---HccCChHHHH
Q 047480 303 ----DQMDQR---DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE--V-----TMVAVLRAC---VGLGALDFGK 365 (719)
Q Consensus 303 ----~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~-----t~~~ll~a~---~~~~~~~~a~ 365 (719)
+.+... |-.+|-..+..-...|+.+...++|++.... ++|-. . .|.-+=-+| ....+.+.++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 222222 4457777777777788999999999988865 45522 1 121111122 3567888899
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHH----hcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHH
Q 047480 366 RLHQQYIENVVFGRNIFLTTAVIDMYA----KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441 (719)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 441 (719)
++++ ...+ -++...+++.-+=-+|+ ++.++..|.+++.......|-..++...|..-.+.++++....++++.+
T Consensus 387 ~vyq-~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQ-ACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHH-HHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998 4444 34455566655544554 6789999999998776655777788888888889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH-cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH
Q 047480 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIW 519 (719)
Q Consensus 442 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~ 519 (719)
+.+ +-|..+|......=...|+.+.|+.+|.-++. ..+......|.+.|+-=...|.++.|..++++. ...+...+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 853 33456777777667778999999999998884 333444567777888888899999999999887 334556678
Q ss_pred HHHHHHHH-----hcC-----------ChhHHHHHHHHHhc----cCCCCch--hHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 520 RALLAACR-----LHR-----------NAKIGEIAGQKLLD----LEPDHGA--HYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 520 ~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
-++..--. +.+ ++..|..+|+++.. ..|.... .....-++-...|...+...+-..|.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 77764422 233 56678888888764 3342211 22233344455666666666666664
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-09 Score=111.80 Aligned_cols=512 Identities=10% Similarity=0.035 Sum_probs=352.3
Q ss_pred ChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--C-CccHHHHHHHHHHcCCCchHHHHHH
Q 047480 20 SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--P-NIFIWNTLMRGYSRSDSPQEALVLY 96 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 96 (719)
+...-+++.+..+..-+.+..+|-.-+ . . ...++|+.++.+..+ | +...|. +|++..-|+.|..++
T Consensus 361 ~~~~K~RVlRKALe~iP~sv~LWKaAV----e--l-E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvL 429 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHIPRSVRLWKAAV----E--L-EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHH----h--c-cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHH
Confidence 334444444444444433345554333 2 3 445557666665543 2 223333 444555566777777
Q ss_pred HHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC-
Q 047480 97 TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII----KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL- 171 (719)
Q Consensus 97 ~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~- 171 (719)
+..++.= |.+...|.+....=-..|+.+....+.+..+ ..|+..+...|-.=...+-+.|..-.+..+.....
T Consensus 430 NkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig 507 (913)
T KOG0495|consen 430 NKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG 507 (913)
T ss_pred HHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Confidence 7766543 2556666665555556666666666654433 34655555555555555555555555554444322
Q ss_pred ----CC-ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCc
Q 047480 172 ----AR-DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246 (719)
Q Consensus 172 ----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~ 246 (719)
+- --.+|+.-...|.+.+.++-|..+|...++. ..-+...|..+...--..|..+.-..+++.++.. .|..
T Consensus 508 igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pka 583 (913)
T KOG0495|consen 508 IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKA 583 (913)
T ss_pred hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcc
Confidence 11 2356777777777777777777777776653 2334445555555555567777777777777765 5555
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHh
Q 047480 247 MLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQ 322 (719)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~ 322 (719)
...+-....-+-..|+...|..++.+. -.+.+...|-+-+..-.....++.|+.+|.+... +....|..-+..---
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY 663 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH
Confidence 666666677777778887777777776 3344667888888888899999999999988764 566677766666677
Q ss_pred cCChhHHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 047480 323 VGGFSQALELFGKMESLGIHPDE-VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401 (719)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 401 (719)
.++.++|++++++.++. -|+- ..|..+-+.+.+.++++.|+..|. .-.+ ..+..+..|-.|.+.=-+.|.+-.|+
T Consensus 664 ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~-~G~k-~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYL-QGTK-KCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred hhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHH-hccc-cCCCCchHHHHHHHHHHHhcchhhHH
Confidence 78899999999888875 4554 456677788888899999998887 2222 23566778888999999999999999
Q ss_pred HHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 402 SVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 402 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
.+|++..-. |.|...|-..|..-.+.|+.+.|..+..+.++. ++-+...|..-|...-+.+.-......+ .+ .
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---kk--c 813 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KK--C 813 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---Hh--c
Confidence 999987654 788999999999999999999999999988875 4445567777777666666643333333 23 4
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
+-|....-.+..++-...+++.|.+.|.+. ...|| ..+|.-+..-+.+||.-+.-..++.+...-+|.....|...+.
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 567777777888899999999999999987 45554 5689999999999999999999999999999988766665543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-11 Score=131.96 Aligned_cols=352 Identities=15% Similarity=0.103 Sum_probs=244.8
Q ss_pred hccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHH
Q 047480 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERA 298 (719)
Q Consensus 221 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A 298 (719)
...|+++.|..++.++++. .|.+...|..|...|-..|+.+++...+-.. -.+.|...|..+.+...+.|.++.|
T Consensus 150 farg~~eeA~~i~~EvIkq---dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQ---DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3349999999999999987 6778888999999999999999888776655 4456678999999999999999999
Q ss_pred HHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCCh----hHHHHHHHHHHccCChHHHHHHHHHH
Q 047480 299 RQLFDQMDQR---DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE----VTMVAVLRACVGLGALDFGKRLHQQY 371 (719)
Q Consensus 299 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~ 371 (719)
.-.|.+..+. +....---+..|-+.|+...|++.|.++.....+.|. .+...+++.+-..++-+.|.+.+...
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999988763 3333344567788999999999999999876421122 22333445555566667777766655
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHH------HHHHHhCCChhHHHHHHHHHHHc
Q 047480 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSI------ISGLAQHGLGETSIAVFREMELM 443 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~ 443 (719)
..+.+-..+....+.++.+|.+...++.|.......... .+|..-|-+- ...++.. ..
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~--------------~~ 372 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV--------------GK 372 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC--------------CC
Confidence 554444445555666667777666666666555443321 1222222100 0000000 01
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHH
Q 047480 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI--KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD---ANSVI 518 (719)
Q Consensus 444 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~---p~~~~ 518 (719)
++.++...+.. .-++.+....+....+.....+..+ .-+...|.-+.++|.+.|++.+|++++..+... .+..+
T Consensus 373 ~~s~~l~v~rl-~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVIRL-MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhHhH-hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 12333333122 2233344444444444444555553 344778999999999999999999999998322 25679
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEE
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 590 (719)
|--+...+...|..++|.+.+++++.+.|++..+-+.|+.+|.++|+.|+|.+++..+..-+-...+++.|-
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999875444444566653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-12 Score=125.82 Aligned_cols=278 Identities=12% Similarity=0.156 Sum_probs=184.6
Q ss_pred HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHh--cCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCH
Q 047480 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK--CGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKI 295 (719)
Q Consensus 220 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~ 295 (719)
+.+.|+++.|.+++....+. ....-....|.|-..+.- -.++.+|..+.+.. .+ .-++...+.-.+.-...|++
T Consensus 429 ~lk~~d~~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 34566666666666666554 222222222323222222 22345555554443 11 12222222222334457889
Q ss_pred HHHHHHHhhcCCCChhhHHHHH---HHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHH
Q 047480 296 ERARQLFDQMDQRDLVSWTAMI---SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372 (719)
Q Consensus 296 ~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 372 (719)
++|.+.+.+....|...-.++. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.+++. .
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~-q- 583 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM-Q- 583 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH-H-
Confidence 9999999888877665433332 2456778899999998877542 23456677788888888888888888876 2
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 047480 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451 (719)
Q Consensus 373 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 451 (719)
...-++.|+.+.+-|.+.|-+.|+-..|.+.+-.--.. +-|..+..-|..-|....-+++|+.+|++..- ++|+..-
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 23345678888899999999999988888776543333 56777777777888888888999999988765 6899998
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHH
Q 047480 452 FVTVLCACS-HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGL 506 (719)
Q Consensus 452 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~ 506 (719)
|..++..|. +.|++.+|..+|+..-+ .++.|.....-|+...+..|.- +|.++
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~-d~key 715 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLK-DAKEY 715 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccch-hHHHH
Confidence 888877654 68999999999988873 2567788888888888887743 34443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-14 Score=143.91 Aligned_cols=256 Identities=17% Similarity=0.134 Sum_probs=113.1
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHH-HHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047480 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA-VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 395 (719)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++ .+...+ +.++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~-~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYE-KLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc-ccccccccccccc-cccc
Confidence 4445566666666666654433322333333333 3334445666667776666 333333 1244455666666 6788
Q ss_pred ChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
++++|.+++...-+..++...|..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887765544677788888999999999999999999987543 344566788888889999999999999999
Q ss_pred HHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 475 MLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 475 m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.++. .|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9974 465 7788899999999999999888877662 2346678899999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
....+++++...|+.++|.+++++.-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-11 Score=116.66 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=134.4
Q ss_pred HHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVE 466 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 466 (719)
.+|....+.++-+..|+...+. +.|..+|.--...+.-.+++++|..=|++.++ +.|+. ..|..+..+..+.+.++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544433 34455555555555556667777777777776 45654 47777777777888899
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChhHHH
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN---------SVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~a~ 536 (719)
++...|++.++. ++.-++.|+.....+...++++.|.+.|+.. ..+|+ +.+-.+++-. +-.+++..|+
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~ 523 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHH
Confidence 999999988842 4445888888899999999999999998875 34443 2233333322 2238999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.+++++++++|....+|..|+.+-...|+.++|+++|++-.
T Consensus 524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=127.13 Aligned_cols=278 Identities=12% Similarity=0.048 Sum_probs=215.6
Q ss_pred CHHHHHHHHhhcCC--CChh-hHHHHHHHHHhcCChhHHHHHHHHhHhcC-C-CCChhHHHHHHHHHHccCChHHHHHHH
Q 047480 294 KIERARQLFDQMDQ--RDLV-SWTAMISGYSQVGGFSQALELFGKMESLG-I-HPDEVTMVAVLRACVGLGALDFGKRLH 368 (719)
Q Consensus 294 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 368 (719)
+..+|...|...+. +|.. ....+..+|...+++++|.++|+...+.. . .-+...|++++.-+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46788888888654 3433 33456788999999999999999988742 1 1255678887766532 2233333
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 047480 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447 (719)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 447 (719)
.+.+.+.. +..+.+|.++.+.|.-+++.+.|++.|++..+. +....+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 32333332 466789999999999999999999999998875 44667888888888999999999999998875 456
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047480 448 DGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALL 523 (719)
Q Consensus 448 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll 523 (719)
... .|-.+...|.+.++++.|.-.|+.+++ +.|. .....++...+.+.|+.|+|+++++++ ..+| |+..----.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 553 777888899999999999999999987 4455 667777888999999999999999997 3444 333333333
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..+...+++++|+..+|++.++-|++...|..++.+|.+.|+.+.|..-|.-|.+-.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 445667899999999999999999999999999999999999999999888887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-09 Score=104.64 Aligned_cols=405 Identities=14% Similarity=0.118 Sum_probs=225.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047480 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219 (719)
Q Consensus 143 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 219 (719)
+...|-.-...=...+++..|+.+|++... ++...|--.+..-.++.++..|..++++....=...|..=|- -+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHH
Confidence 333443333333445677889999987543 677888888998899999999999999887632222332222 2222
Q ss_pred HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 047480 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299 (719)
Q Consensus 220 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 299 (719)
=-.+|++..|+++|..-.+ ..|+...|++.|+.=.+-..++.|.
T Consensus 151 EE~LgNi~gaRqiferW~~------------------------------------w~P~eqaW~sfI~fElRykeieraR 194 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME------------------------------------WEPDEQAWLSFIKFELRYKEIERAR 194 (677)
T ss_pred HHHhcccHHHHHHHHHHHc------------------------------------CCCcHHHHHHHHHHHHHhhHHHHHH
Confidence 2346777777777776654 3555555555555555555555555
Q ss_pred HHHhhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc-CC-CCChhHHHHHHHHHHccCChHHHHHHHHHHHHHc
Q 047480 300 QLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKMESL-GI-HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375 (719)
Q Consensus 300 ~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 375 (719)
.++++.. .|++.+|--....-.++|+...|..+|....+. |- ..+...|.+...--.+...++.|..++. +....
T Consensus 195 ~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk-yAld~ 273 (677)
T KOG1915|consen 195 SIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK-YALDH 273 (677)
T ss_pred HHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 5555433 355555555555555555555555555554432 10 0011122222222223344555555555 44332
Q ss_pred CCC-CChhHHHHHHHHHHhcCChHHHHHH--------HhcC-CCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 047480 376 VFG-RNIFLTTAVIDMYAKCGSIDTALSV--------FYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445 (719)
Q Consensus 376 ~~~-~~~~~~~~li~~y~k~g~~~~A~~~--------~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 445 (719)
-.. ....++..++..=-+-|+.....++ ++.+ ..++-|-.+|--.+..-...|+.+...++|++.+.. +
T Consensus 274 ~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-v 352 (677)
T KOG1915|consen 274 IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-V 352 (677)
T ss_pred cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-C
Confidence 211 1123333333333333433322222 1222 222456666766666666667777777777777754 4
Q ss_pred CCCHH--HHHHHH-----HH---HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH----hcCCHHHHHHHHHhC-
Q 047480 446 KPDGV--TFVTVL-----CA---CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA----RDGRLDEAYGLIQSM- 510 (719)
Q Consensus 446 ~p~~~--t~~~ll-----~a---~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~eA~~~~~~~- 510 (719)
+|-.. .|...| -+ =....+++.+.++|+..++. ++....++.-+--+|+ |+.++..|.+++-..
T Consensus 353 pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 353 PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 55221 111111 11 12356677777777776651 2333455555444443 566777777777554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcc
Q 047480 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587 (719)
Q Consensus 511 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 587 (719)
+.-|-.-++...|..-.+.++++....++++.++..|.+..++...+..-...|+++.|+.+|+...+....-.|..
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 55566677777777767777777777777777777777777777777777777777777777777766554333433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-10 Score=118.06 Aligned_cols=247 Identities=12% Similarity=0.087 Sum_probs=131.0
Q ss_pred HhcCChhHHHHHHHHhHhcCCCCChhHHH--HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 047480 321 SQVGGFSQALELFGKMESLGIHPDEVTMV--AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 398 (719)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|.+.++ ...+.. +.++.+...+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~-~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVD-KLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 4555555555555555442 33332221 22334445555555555555 333222 334455555555555556666
Q ss_pred HHHHHHhcCCCC-CCChh--------cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 047480 399 TALSVFYKIPKN-LKTVS--------LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469 (719)
Q Consensus 399 ~A~~~~~~~~~~-~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (719)
+|.+++..+.+. ..+.. .|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666555555443 11111 2222333333333444455555544332 2334455666666666777777777
Q ss_pred HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 470 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
+.+++..+. .|+.... ++......++.+++.+.+++. ...|+ .....++...|...+++++|...++++++..|
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 777666652 3333221 122222346677777666665 33443 33455556667777777777777777777777
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 456677777777777777777777654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-08 Score=107.16 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=63.4
Q ss_pred CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHH
Q 047480 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252 (719)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~ 252 (719)
++..+|.+++..-..+|+.+.|..++.+|.+.|+..+..-|-.+|-+ .++....+.+...|... |+.|+..++..
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~ad 276 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQAD 276 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHH
Confidence 57778888888888889999999999999999888888777766654 67777777888888777 78888777765
Q ss_pred HHHHHHh
Q 047480 253 VINMYAK 259 (719)
Q Consensus 253 li~~y~~ 259 (719)
-+-...+
T Consensus 277 yvip~l~ 283 (1088)
T KOG4318|consen 277 YVIPQLS 283 (1088)
T ss_pred HHHhhhc
Confidence 4444444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-10 Score=120.68 Aligned_cols=281 Identities=10% Similarity=0.010 Sum_probs=215.5
Q ss_pred hcCChHHHHHHHHHc-CCCCchHHHHHH-HHHHHhcCCHHHHHHHHhhcCC--CChhhHH--HHHHHHHhcCChhHHHHH
Q 047480 259 KCGLMNMAERVFSTM-GMSKSTAAWSSM-ISGYTREGKIERARQLFDQMDQ--RDLVSWT--AMISGYSQVGGFSQALEL 332 (719)
Q Consensus 259 ~~g~~~~a~~~~~~~-~~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~~ 332 (719)
-.|+++.|.+.+.+. ...+++..+..+ .....+.|+++.|...|.++.+ |+....- .....+...|++++|.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 369999999998876 222333444333 3444789999999999999876 3332222 335678899999999999
Q ss_pred HHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHh
Q 047480 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI-------FLTTAVIDMYAKCGSIDTALSVFY 405 (719)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~y~k~g~~~~A~~~~~ 405 (719)
++++.+.. +-+...+..+...+...|+++.+.+++. .+.+....+.. ..+..++....+..+.+...++++
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~-~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILP-SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998864 3356677788899999999999999999 66666543322 123344544555666778888888
Q ss_pred cCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh
Q 047480 406 KIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484 (719)
Q Consensus 406 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 484 (719)
.++.. +.++.....+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.. +-|.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 88766 568888999999999999999999999999873 555522 13334445699999999999988543 3446
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
..+.++..++.+.|++++|.+.|+.+ ...|+...+..+...+...|+.++|...+++.+.+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 67889999999999999999999987 677999998999999999999999999999998754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-11 Score=124.99 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=193.1
Q ss_pred ChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCChH-HHH
Q 047480 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV-F-GRNIFLTTAVIDMYAKCGSID-TAL 401 (719)
Q Consensus 325 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~li~~y~k~g~~~-~A~ 401 (719)
+..+|+..|.....+ +.-+......+..+|..++++++++.+|+ .+.+.. . ..+..+|++.+--+-+.-.+. -|.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~-~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFS-LVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 568999999995444 34455777788999999999999999999 555432 2 245667777664333222111 122
Q ss_pred HHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
.+.+.. +..+.+|-++...|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+
T Consensus 412 ~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 412 DLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 232222 35788999999999999999999999999998 567 55788888888888999999999999886
Q ss_pred ccChhHHHHH---HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 047480 481 KPQMEHYGCM---VDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555 (719)
Q Consensus 481 ~p~~~~~~~l---i~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (719)
..|..+|+++ .-.|.+.++++.|+-.|+++ .+.|. .+....+...+-+.|+.|+|+.++++++-++|.++-.-+.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 4566677654 56789999999999999988 67774 4555555666888999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 047480 556 LSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 556 l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.+.++...+++++|...++++++.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999999863
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.4e-13 Score=132.94 Aligned_cols=251 Identities=13% Similarity=0.175 Sum_probs=84.3
Q ss_pred HHHHHhcCCHHHHHHHHhhc-CC----CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 286 ISGYTREGKIERARQLFDQM-DQ----RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
...+.+.|++++|.++++.. .. .|...|..+.......++.++|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34444445555555555321 11 12333333333444445555555555555443211 22233333333 34455
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhHHHHHH
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGETSIAVF 437 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 437 (719)
+++|.++......+ .++...+...+..|.+.++++++.++++.+... +.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555544422211 123344445555566666666666666553321 245566777777777777777777777
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 047480 438 REMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA- 514 (719)
Q Consensus 438 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p- 514 (719)
++..+. .|+ ......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|+..+++. ...|
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 777764 554 4456667777777777777777777766432 445566677777777777777777777776 2234
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
|+.+...+..++...|+.++|..+.+++++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 555666666777777777777777776654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-09 Score=106.15 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=66.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 047480 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396 (719)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 396 (719)
.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++ .+.+.+ +.|-..|-.|.++|.-.+.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR-rAvdi~-p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR-RAVDIN-PRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH-HHHhcC-chhHHHHhhhhHHHHHhcc
Confidence 333444444444444444444332 1112233333334444444444444444 333222 2333444444444444444
Q ss_pred hHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 047480 397 IDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475 (719)
Q Consensus 397 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (719)
..-|+-.|++...- |.|...|.+|..+|.+.++.++|+..|.+....| ..+...+..|...+-+.++.++|.++|+.-
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444443333 3344444444444444444555555444444433 223344444444444444444444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-09 Score=115.49 Aligned_cols=252 Identities=11% Similarity=0.023 Sum_probs=121.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CCh--hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCCh
Q 047480 286 ISGYTREGKIERARQLFDQMDQ--RDL--VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
..++.+.|+.+.|.+.+.+..+ |+. ...-.....+.+.|++++|.+.++++.+.. +-+...+..+...+...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 3444455555555555555322 221 112222444455555555555555555542 11333444555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCChhH-------HHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFL-------TTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETS 433 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~-------~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 433 (719)
+.+.+.+. ...+.+..+.... +..+++.-......+...+.+...+.. +.++..+..+...+...|+.++|
T Consensus 204 ~~a~~~l~-~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIID-NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 55555555 3443332211111 111111111122233444444444432 34666777777777777777778
Q ss_pred HHHHHHHHHcCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHcCCccC-h--hHHHHHHHHHHhcCCHHHHHHHH
Q 047480 434 IAVFREMELMGLKPDGVTF---VTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-M--EHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 434 ~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~--~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
.+++++..+. .||.... ..........++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777777764 3444321 11111122335555666666555532 222 2 33445556666666666666666
Q ss_pred Hh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 508 QS---MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 508 ~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
+. ....|+...+..+...+.+.|+.++|.+++++.+
T Consensus 359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 62 2344555555555555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-09 Score=102.50 Aligned_cols=342 Identities=12% Similarity=0.062 Sum_probs=231.1
Q ss_pred HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCCHHH
Q 047480 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA--AWSSMISGYTREGKIER 297 (719)
Q Consensus 220 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~ 297 (719)
..+.|..+.|...+...+.. .|-.-..|..|.... .+.+.+..+.. +.+.|.. .---+..+|-...+.++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~---~P~~W~AWleL~~li---t~~e~~~~l~~--~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR---YPWFWSAWLELSELI---TDIEILSILVV--GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc---CCcchHHHHHHHHhh---chHHHHHHHHh--cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 34556666777666666553 333333333333222 22222222111 2222211 11123344444445555
Q ss_pred HHHHHhhcCC---CC-hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-C-CChhHHHHHHHHHHccCChHH-HHHHHHH
Q 047480 298 ARQLFDQMDQ---RD-LVSWTAMISGYSQVGGFSQALELFGKMESLGI-H-PDEVTMVAVLRACVGLGALDF-GKRLHQQ 370 (719)
Q Consensus 298 A~~~f~~m~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~~~t~~~ll~a~~~~~~~~~-a~~~~~~ 370 (719)
+..-.+.... ++ ...-+....+.-.+.++++|+.+|++..+... . -|..+|+.++-+-.....+.- |..++
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-- 323 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-- 323 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH--
Confidence 5544444332 12 22222233344566789999999999987631 1 156788877765443222221 22221
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 047480 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449 (719)
Q Consensus 371 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 449 (719)
.+. .-.+.+...+.+-|+-.++-++|...|++..+. +.....|+.|..-|....+...|++-+++.++-. +.|-
T Consensus 324 ~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~Dy 398 (559)
T KOG1155|consen 324 NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDY 398 (559)
T ss_pred Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhH
Confidence 122 233455667788899999999999999998775 5667789999999999999999999999999842 4466
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 527 (719)
..|-.|.++|.-.+.+.-|+-+|++..... +-|...|.+|.+.|.+.++.++|++-|++.- .+.+...+..|...+.
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 799999999999999999999999998743 4458899999999999999999999999872 2335588899999999
Q ss_pred hcCChhHHHHHHHHHhc-------cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 528 LHRNAKIGEIAGQKLLD-------LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
+.++.++|...+++-++ .+|....+...|+.-+.+.++|++|..+.....
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99999999999999887 345445566678899999999999998766654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-10 Score=118.16 Aligned_cols=284 Identities=14% Similarity=0.067 Sum_probs=186.5
Q ss_pred cCCCcchHHHHHHHHHHCCCCCChhh-HHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHH
Q 047480 187 QVKEPCPALWLFRKMQDSCIQPDAFT-FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265 (719)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 265 (719)
..|+++.|.+.+.+..+. .|+... +.....+..+.|+.+.+.+.+..+.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------------------------- 147 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-------------------------- 147 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------
Confidence 467777777777665543 343322 223334455556666666666665544
Q ss_pred HHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcC
Q 047480 266 AERVFSTMGMSKST--AAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340 (719)
Q Consensus 266 a~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 340 (719)
.|+. .+.-.....+...|+++.|...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.+
T Consensus 148 ----------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 148 ----------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred ----------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 2333 3444457777778888888888887765 355567777888888888888888888888776
Q ss_pred CCCChhHHHHHHHHH---HccCChHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChh
Q 047480 341 IHPDEVTMVAVLRAC---VGLGALDFGKRLHQQYIENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415 (719)
Q Consensus 341 ~~p~~~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~ 415 (719)
+.+.......-..+. ...+..+.+.+.+........ .+.+...+..+...+...|+.+.|.+++++..+..||..
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 433222111111111 111222222233332232221 124788888999999999999999999999877533333
Q ss_pred c---HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHH
Q 047480 416 L---FNSIISGLAQHGLGETSIAVFREMELMGLKPDGV---TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489 (719)
Q Consensus 416 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 489 (719)
. +..........++.+.+.+.+++..+. .|+.. ...++...|.+.|++++|.++|+........|+...+..
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 1 122222334467888899999888874 56655 455788889999999999999996554446799888999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 047480 490 MVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~ 510 (719)
+...+.+.|+.++|.+++++.
T Consensus 376 La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-09 Score=111.42 Aligned_cols=473 Identities=11% Similarity=0.061 Sum_probs=274.3
Q ss_pred HHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC
Q 047480 94 VLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173 (719)
Q Consensus 94 ~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 173 (719)
.++-.+...|+. ||..||..++.-|+..|+.+.|- +|..|.....+....+++.++......++.+.+. +|
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 355567778887 88888888888888888888777 8888777777777778888888777777776665 56
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhccC-C------cHHHHHHHHHHHH
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRK-MQ-------DSCIQPDAFTFVAMFSACTELN-D------PRIGKQFHAVVYK 238 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~pd~~t~~~ll~a~~~~~-~------~~~a~~i~~~~~~ 238 (719)
...+|..|..+|.+.|+... ++..++ |. ..|+.--..-+-..+.+|...- + ...-+.+.+...+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887644 222222 21 1232222222222222221110 0 0011122233333
Q ss_pred hhCCCCCchHHHHHH--HH-HHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----h
Q 047480 239 NLGCVGSNMLLKTAV--IN-MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----V 311 (719)
Q Consensus 239 ~~~~~~~~~~~~~~l--i~-~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~----~ 311 (719)
.....|......... ++ .-.....+++.....+...-.+++.++.++++.-...|+++.|..+...|.++.. .
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 311122111111111 11 1112223455555555542279999999999999999999999999999987532 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHH----------HHHH-------
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ----------YIEN------- 374 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~----------~~~~------- 374 (719)
-+-.++-+ .++...+..+++-|.+.|+.|+..|+...+-.+...|....+.+.... .+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 23344433 788888899999999999999999999988888886665543322110 0000
Q ss_pred ------------------cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CCChhcHHHHHHHHHhCC---
Q 047480 375 ------------------VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-----LKTVSLFNSIISGLAQHG--- 428 (719)
Q Consensus 375 ------------------~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g--- 428 (719)
.|+.....+|.-.+. ....|.-+..+++-..+..- +.++..+..++.-|.+.-
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 011111111111111 11134444444444443321 123334444333332211
Q ss_pred -------------------ChhHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHHHhc
Q 047480 429 -------------------LGETSIAVFREMELMGLKPDGV----------------------------TFVTVLCACSH 461 (719)
Q Consensus 429 -------------------~~~~A~~~~~~m~~~g~~p~~~----------------------------t~~~ll~a~~~ 461 (719)
...+..++... ..||.. .-+.++..|..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 01111111111 122221 12334444444
Q ss_pred cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHH
Q 047480 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-----YDANSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
.-+..+++..-+.....-+ ...|..|++.+....++++|..+.++.. ..-|..-+..+.+...+++....+.
T Consensus 472 e~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 4444444433333332111 1568899999999999999999999873 2235566778888888899888888
Q ss_pred HHHHHHhc---cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccE
Q 047480 537 IAGQKLLD---LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589 (719)
Q Consensus 537 ~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 589 (719)
.+.+++.+ ..|.-......+.+..+..|+.+.-.++++-+...|+.. .|--|
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 88887765 344445567778888889999999999999999988865 34444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-08 Score=101.02 Aligned_cols=509 Identities=14% Similarity=0.157 Sum_probs=300.6
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCC-----CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDN-----PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~ 113 (719)
+.+|-..+....+ . |++..-++.|+.... .....|.-.+.-..+.+-++-++.+|++.++.. |.. -.
T Consensus 102 pRIwl~Ylq~l~~--Q-~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~~--~e 173 (835)
T KOG2047|consen 102 PRIWLDYLQFLIK--Q-GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PEA--RE 173 (835)
T ss_pred CHHHHHHHHHHHh--c-chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HHH--HH
Confidence 5677777888888 7 999999999987532 345579999999999999999999999998865 333 45
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---hHHHHHHccCCCC--C--hhhHHH
Q 047480 114 FVLNSCARLSSFKSGCQIHCHIIKFG------LEFDLFIRNALIHFYSIFGYI---NNAHKVFEGSLAR--D--LVSYNT 180 (719)
Q Consensus 114 ~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~~--~--~~~~~~ 180 (719)
--+.-++..+++++|.+.+..++... -+.+...|..+.+..++.-+. -....++..+..+ | ...|++
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 55666778899999999888876432 145666777777777665332 2344556665553 3 357999
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH----------------------HHHHHHHHHH
Q 047480 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI----------------------GKQFHAVVYK 238 (719)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~----------------------a~~i~~~~~~ 238 (719)
|..-|.+.|.++.|.++|++-... ..+..-|..+.++|++...... ...-++.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999999987764 2344455666666554322111 1111222211
Q ss_pred hhC---------CCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCC------chHHHHHHHHHHHhcCCHHHHHHH
Q 047480 239 NLG---------CVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSK------STAAWSSMISGYTREGKIERARQL 301 (719)
Q Consensus 239 ~~~---------~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~------~~~~~~~li~~y~~~g~~~~A~~~ 301 (719)
..+ ..+.++..|..-+.. ..|+..+....+.+. .+.| -...|..+.+.|-..|+++.|+.+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 100 011111111111111 122233333334333 2222 124677888888888888888888
Q ss_pred HhhcCCCChh-------hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 047480 302 FDQMDQRDLV-------SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374 (719)
Q Consensus 302 f~~m~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 374 (719)
|++..+-+-. +|-.-...=.++.+++.|+++.++... .|.... + .+...+..-++ .+|
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~-rlh------ 474 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA-RLH------ 474 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH-HHH------
Confidence 8887653222 344444455566777777777666543 232211 1 11111111111 111
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HH
Q 047480 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TF 452 (719)
Q Consensus 375 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 452 (719)
.+..+|+-.++.--..|-++....+++++.+. ..++..--....-+-.+.-++++.++|++-+..--.|+.. .|
T Consensus 475 ----rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 475 ----RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred ----HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 23455666677777778888888888877663 1121111111222344566777887777655543345543 44
Q ss_pred HHHHHHHh---ccCcHHHHHHHHHHHHHcCCccChh--HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHH
Q 047480 453 VTVLCACS---HGGLVEEGKQFFESMLNYGIKPQME--HYGCMVDLLARDGRLDEAYGLIQSMP--YDAN--SVIWRALL 523 (719)
Q Consensus 453 ~~ll~a~~---~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~--~~~~~~ll 523 (719)
+..|.-+. ..-.++.|+.+|++.++ |.+|.-. .|-.....=-+-|....|++++++.. .++. ...|+..|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444332 23467888888888887 5555421 22222233335577777888888873 3332 24677777
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCch--hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGA--HYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.-....=-+..-..+++++++.=|++-. .....+++=.+.|..+.|+.++.--.+.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 5543333344556778888887776432 3445566777888888888887765543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-08 Score=103.42 Aligned_cols=264 Identities=13% Similarity=-0.002 Sum_probs=202.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
++.....-..-+...+++.+.++++....+.. ++....+..-|..+...|+..+-..+-.+++.. .+....+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 33444445566777899999999999988763 455555555566677777665554444323333 356677888999
Q ss_pred HHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
--|.-.|+.++|++.|.+.... +.=...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 8899999999999999987663 233457999999999999999999998877663 12222334444456888999999
Q ss_pred HHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChhHHHH
Q 047480 468 GKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP--------YDA-NSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
|.++|.+... +-|+ +..++-+.-+....+.+.+|..+|+..- .++ -..+|+.|..+|++.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999998874 4444 6677777777778889999999987751 112 34578889999999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.+++++.+.|.++.+|..++-+|...|+++.|.+.|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-10 Score=110.02 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=165.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
....+..+...|.+.|++++|.+.|++.... +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3556677888999999999999999887654 4567788889999999999999999999998753 3345677778888
Q ss_pred HhccCcHHHHHHHHHHHHHcCC-ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGI-KPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 535 (719)
+...|++++|.+.++.+.+... ......+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+.++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999985322 223556777889999999999999999887 3334 456788888889999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=86.00 Aligned_cols=50 Identities=30% Similarity=0.549 Sum_probs=46.4
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (719)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-08 Score=97.42 Aligned_cols=294 Identities=14% Similarity=0.096 Sum_probs=165.4
Q ss_pred HHHHHHHc--CCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 047480 180 TLINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257 (719)
Q Consensus 180 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y 257 (719)
.+..+..+ .|++..|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-+....+.+.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~------------------ 147 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAEL------------------ 147 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhcc------------------
Confidence 34444443 678888888888776665444 234555566677778888888887777765
Q ss_pred HhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047480 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD---QRDLVSWTAMISGYSQVGGFSQALELFG 334 (719)
Q Consensus 258 ~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (719)
.-.++..+.-+........|+.+.|..-.++.. .++..........|.+.|++.+...+..
T Consensus 148 ----------------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 148 ----------------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred ----------------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 335556666677777777777777777666554 3566677778888888888888888888
Q ss_pred HhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCC
Q 047480 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKT 413 (719)
Q Consensus 335 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~ 413 (719)
+|.+.|+--|... .++ ...+++.+++-....+..+.-...++..+.. ..+
T Consensus 212 ~L~ka~~l~~~e~-----------------~~l------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~ 262 (400)
T COG3071 212 KLRKAGLLSDEEA-----------------ARL------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND 262 (400)
T ss_pred HHHHccCCChHHH-----------------HHH------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence 8888775444321 000 0112233333333333333333344444443 233
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHH
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~ 492 (719)
+..-.+++.-+.+.|+.++|.++.++..+.+..|+-. .+-.+.+.++.+.-.+..+.-. .++-. +..+.+|..
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~ 336 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGR 336 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHH
Confidence 4444555555566666666666666666555555411 1223445555554444444444 22222 244445555
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 493 LLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
.|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.++|....++.+
T Consensus 337 L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 337 LALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 555555555555555543 444555555555555555555555555554444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-07 Score=96.72 Aligned_cols=278 Identities=14% Similarity=0.080 Sum_probs=173.0
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 047480 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMI 317 (719)
Q Consensus 243 ~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 317 (719)
...+..+.....+-+...+++++..++.+.. ..++....+..-|..+...|+..+-..+=.++.+ ...++|-++.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3444444455555555666666666555555 3344444555555566666654443333333332 2455676666
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC
Q 047480 318 SGYSQVGGFSQALELFGKMESLGIHPD-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVF-GRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g 395 (719)
.-|...|..++|.+.|.+...- .|. ...|.....+++..+.-++|...+. .+.+.-. ..-+..| +.--|.+.+
T Consensus 320 ~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~-tAarl~~G~hlP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYF-TAARLMPGCHLPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHH-HHHHhccCCcchHHH--HHHHHHHhc
Confidence 6666667777777777665432 221 2345566666666666666666665 3333210 1112222 223467778
Q ss_pred ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc--CC---CC-CHHHHHHHHHHHhccCcHHHH
Q 047480 396 SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM--GL---KP-DGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p-~~~t~~~ll~a~~~~g~~~~a 468 (719)
+++.|.+.|.+.... |.|+...+-+.-..-..+.+.+|...|+..+.. .+ ++ -..+++.|..+|.+.+..++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 888888888876665 567778888877777788888888888876631 01 11 234677888888888888888
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAAC 526 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~ 526 (719)
+..|++.+... +.+..++.++.-.|...|+++.|.+.|.+. ..+||..+-..+++.+
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 88888887532 456778888888888888888888888776 5677777767666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=85.99 Aligned_cols=50 Identities=36% Similarity=0.652 Sum_probs=48.2
Q ss_pred CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 047480 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222 (719)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 222 (719)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999864
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-08 Score=94.13 Aligned_cols=271 Identities=11% Similarity=0.017 Sum_probs=195.5
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH---HHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHH
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM---ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 350 (719)
-++.|+....++.+.|...|+.++|...|++..--|..+...| .-.+.+.|++++...+...+.... .-....|..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 5677888889999999999999999999998776554443332 233567888888888888776542 112222322
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC
Q 047480 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 351 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 429 (719)
-+...-...+.+.|..+-+ ...+.. +.++..+-.-..++...|+.++|.-.|+..... |-+..+|.-|+..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~e-K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVE-KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHH-HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 3333445567777776666 333322 223333333345667789999999999887655 4678899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-cCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVL-CACSH-GGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGL 506 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~ 506 (719)
..+|.-+-+..... +..+..+...+. ..|.- ...-++|..++++..+ +.|+ ....+.+...+.+.|+.++++.+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99998887766553 233444554442 23332 2335789999888775 4677 67788889999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 507 IQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 507 ~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+++. ...||....+.|....+-.+.+++|...|..++.++|++.
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 9886 5678999999999999999999999999999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-07 Score=98.07 Aligned_cols=427 Identities=12% Similarity=0.036 Sum_probs=252.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCh-hhHH
Q 047480 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA-FTFV 214 (719)
Q Consensus 139 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~ 214 (719)
.+..|..+|..|.-....+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+. ..+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567889999999999999999999999998543 34567999999999999999999998876544323443 3344
Q ss_pred HHHHHHh-ccCCcHHHHHHHHHHHHhhCCCCCc--hHHHHHHHHHHHhcCC-----------hHHHHHHHHHc-CC-CCc
Q 047480 215 AMFSACT-ELNDPRIGKQFHAVVYKNLGCVGSN--MLLKTAVINMYAKCGL-----------MNMAERVFSTM-GM-SKS 278 (719)
Q Consensus 215 ~ll~a~~-~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~-----------~~~a~~~~~~~-~~-~~~ 278 (719)
.+-+.|. +.+..+++..+-..++...++.... ...+-.+.-+|...-. -.++...+++. .+ +.|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444454 4466667766666666532222221 2223333333332211 22344455554 12 222
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH
Q 047480 279 TAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354 (719)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 354 (719)
+.+.-.+.--|+..++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+.....- .-|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 23333333446666777777776665443 466678777777777888888888877665431 1111111111222
Q ss_pred HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCCChh-cHHHHHHHHHhCCCh
Q 047480 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP---KNLKTVS-LFNSIISGLAQHGLG 430 (719)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~-~~~~li~~~~~~g~~ 430 (719)
-...++.+++.........-..-.+. ....|+-....+.+..+. ..+.+.. ++..+. +..+ -+.
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~ 624 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQL 624 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhh
Confidence 22234444444333311000000000 001111222333333322 1122222 222222 2222 111
Q ss_pred hHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH
Q 047480 431 ETSIAVFREMELMGLKPDGV--------TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 502 (719)
..+..-.. |...-+.|+.. .|......+...+..++|...+.++.+. .......|......+...|+++|
T Consensus 625 ~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 625 KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHH
Confidence 11100000 22222233221 2344555677888899998887777642 12335667777788899999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 503 AYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEI--AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 503 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
|.+.|... ...|+ +.+..++...+.+.|+...|.. +...+++++|.++.+|..|+.++.+.|+.++|.+.|....+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99998876 56775 4578888888999998888888 99999999999999999999999999999999999998876
Q ss_pred CC
Q 047480 579 SG 580 (719)
Q Consensus 579 ~~ 580 (719)
-.
T Consensus 783 Le 784 (799)
T KOG4162|consen 783 LE 784 (799)
T ss_pred hc
Confidence 43
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-08 Score=94.25 Aligned_cols=439 Identities=14% Similarity=0.079 Sum_probs=247.1
Q ss_pred CChHHHHHHhccCCC------CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHH
Q 047480 56 NGLFRSRILFSQIDN------PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129 (719)
Q Consensus 56 g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~ 129 (719)
.+++.|+.+++.-.. .++..| +..++-+.|++++|+..|..+.+..- |+...+..+..+..-.|.+.+|+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHH
Confidence 566666666543321 122233 44566678888899888888776542 66666666666666677777777
Q ss_pred HHHHHHHHhCCCCChhHHHHHH-HHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC
Q 047480 130 QIHCHIIKFGLEFDLFIRNALI-HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208 (719)
Q Consensus 130 ~~~~~~~~~g~~~~~~~~~~Li-~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 208 (719)
++-... |+....+.|+ +.-.+.++-++-..+-+++. ....---+|.+.....-++.+|++++.+.+.. .|
T Consensus 112 ~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~Lq-D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 112 SIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ-DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred HHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 765442 4444444444 44444455444433333332 22222334444444455678899999888764 35
Q ss_pred ChhhHHHHHHH-HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHH
Q 047480 209 DAFTFVAMFSA-CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSM 285 (719)
Q Consensus 209 d~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~l 285 (719)
+-...+.-+.. +.+..-++.+..++..-.+. +|.+....|..+....+.-....|..-.+++ .....- ..
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~----~f 255 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY----PF 255 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc----hh
Confidence 55555554444 45667777777777776665 5666666666655555544444444333333 111110 01
Q ss_pred HHHHHhc-----CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 286 ISGYTRE-----GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 286 i~~y~~~-----g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
+.-.++. ..-+.|.+++-.+...=...--.++--|.++++..+|..+.+++.. ..|-......+..+- .|
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa--lG- 330 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA--LG- 330 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH--hh-
Confidence 1111221 1224444444333221111222344456777777777777666532 123333322222221 11
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhHHHHHH
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGETSIAVF 437 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 437 (719)
.-......+.-|...|+-+.+. ..++..-.+|.+.+.-..++++.+-.+
T Consensus 331 ----------------------------Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 331 ----------------------------QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred ----------------------------hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 1111111233344444333322 234445566777777777788888777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 047480 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517 (719)
Q Consensus 438 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~ 517 (719)
......- .-|...-..+..|.+..|.+.+|.++|-.+....++-+..-...|...|.++++.+-|++++-++....+..
T Consensus 383 nSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~f 461 (557)
T KOG3785|consen 383 NSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERF 461 (557)
T ss_pred HHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHH
Confidence 7776653 333343345677888899999999999776643333333334456688999999999999998886555666
Q ss_pred HHHHHHHH-HHhcCChhHHHHHHHHHhccCCC
Q 047480 518 IWRALLAA-CRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 518 ~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
+.-.+|.- |.+.+.+--|-++|..+-.++|.
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 66666654 88888888888888888888885
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-08 Score=96.75 Aligned_cols=302 Identities=13% Similarity=0.097 Sum_probs=207.3
Q ss_pred HHHHHHHHc--CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 047480 77 NTLMRGYSR--SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154 (719)
Q Consensus 77 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 154 (719)
..+..++.+ .|+|.+|.++..+-.+.+-. ....|.....+.-+.|+.+.+-.+..++.+..-.++..+.-+.....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 345555544 68999999999987777632 23345566666778899999999999998874467777888888888
Q ss_pred HhcCChhHHHHHHcc---CCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 047480 155 SIFGYINNAHKVFEG---SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231 (719)
Q Consensus 155 ~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (719)
...|+.+.|+.-.++ |..++..........|.+.|++.+...++..|.+.|+--|... .+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~ 226 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR 226 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH
Confidence 899999999887765 5567888899999999999999999999999998886544321 11
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 047480 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---R 308 (719)
Q Consensus 232 i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~ 308 (719)
+- ..+|+.+++-....+..+.-...++..+. .
T Consensus 227 le---------------------------------------------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~ 261 (400)
T COG3071 227 LE---------------------------------------------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN 261 (400)
T ss_pred HH---------------------------------------------HHHHHHHHHHHhccccchHHHHHHHhccHHhhc
Confidence 00 11222233322223333333344444442 3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ..+-.+.+.++.+.-.+..++.....+..| ..+.+|.
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG 335 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLG 335 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHH
Confidence 3444455666677777888888887777777665552 222345566666666666665666665444 6778888
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 448 (719)
..|.+.+.+.+|...|+...+..++...|+-+..+|.+.|+..+|.+++++....-..|+
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 888888888888888887666567788888888888888888888888777664433443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-08 Score=95.07 Aligned_cols=251 Identities=11% Similarity=0.098 Sum_probs=167.9
Q ss_pred cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChHHH
Q 047480 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN--IFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A 400 (719)
+++.++|.++|-+|.+.. +-+..+-.++-+.+-+.|..+.|..+|...+...++..+ ....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887642 223344456667777788888888888844444333222 22334566778888888888
Q ss_pred HHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHH
Q 047480 401 LSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV----TFVTVLCACSHGGLVEEGKQFFESM 475 (719)
Q Consensus 401 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m 475 (719)
+.+|..+.+. ..-.....-|+..|-+..++++|+++-+++.+.+-.+..+ .|.-+........+++.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888887763 2233456677888888888888888888888776565553 4556666666777888888888888
Q ss_pred HHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 476 LNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS--VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 476 ~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.+.. |+ +..--.+.+.+...|+++.|.+.++.. ...|+. .+...|..+|.+.|+.+++...+.++.+..++. .
T Consensus 207 lqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~ 283 (389)
T COG2956 207 LQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-D 283 (389)
T ss_pred HhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-c
Confidence 7533 33 334445667888888888888888877 334443 356777788888888888888888888877764 3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.-..+...-....-.++|..+..+-.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 44445544444444455555444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-09 Score=115.34 Aligned_cols=246 Identities=12% Similarity=0.022 Sum_probs=176.8
Q ss_pred ChhHHHHHHHHhHhcCCCCCh-hHHHHHHHHHH---------ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 325 GFSQALELFGKMESLGIHPDE-VTMVAVLRACV---------GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 325 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
..++|+++|++..+. .|+. ..+..+..++. ..++.++|...++ ...+.. +.+...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~-~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI-KATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH-HHHhcC-CCCHHHHHHHHHHHHHc
Confidence 357888888888865 4543 34444433332 2244788888888 455443 45677788888889999
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFF 472 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 472 (719)
|++++|...|++..+. |.+...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999997765 556778999999999999999999999999985 56543 3333444566789999999999
Q ss_pred HHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 473 ESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSV-IWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 473 ~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
+++.+.. .|+ ...+..+..+|...|++++|.+.++++ +..|+.. .++.+...+...| +.|...++++++..-..
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 9987543 343 556777889999999999999999987 4455544 4455555566666 47777777777643333
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+.....+...|+-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33334477788888888888877 7777654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-08 Score=102.94 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHHHH----cCC-CCCh-hHHHHHHHHHHhcCChHHHHHHHhcCCCC--------
Q 047480 345 EVTMVAVLRACVGLGALDFGKRLHQQYIEN----VVF-GRNI-FLTTAVIDMYAKCGSIDTALSVFYKIPKN-------- 410 (719)
Q Consensus 345 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------- 410 (719)
..|...+...|...|+++.|.+++...+.. .|. .+.+ ...+.+..+|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666778888888888888888743332 121 1121 12234667888899999998888775432
Q ss_pred -CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHH-c--C
Q 047480 411 -LKTVSLFNSIISGLAQHGLGETSIAVFREMEL-----MGLKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLN-Y--G 479 (719)
Q Consensus 411 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~-~--g 479 (719)
+.-..+++.|...|...|++++|..++++..+ .|..+..+ -++.+...|...+.+++|..+++...+ + -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12234688888899999999999888877654 22222222 566677779999999999999988762 1 1
Q ss_pred CccC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------C--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc-
Q 047480 480 IKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSMP-------Y--DA-NSVIWRALLAACRLHRNAKIGEIAGQKLLD- 544 (719)
Q Consensus 480 ~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~-------~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 544 (719)
+.++ ..+++.|...|...|+++||+++++++- . .+ .....+.|..+|.+.++.++|.++|++...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4689999999999999999999998861 1 22 245677788889999999999999988765
Q ss_pred ---cCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 545 ---LEPDH---GAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 545 ---~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
..|+. ..+|..|+.+|.+.|++|+|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444 4578899999999999999999988876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-08 Score=94.21 Aligned_cols=280 Identities=13% Similarity=0.130 Sum_probs=175.9
Q ss_pred CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC-CCC--ChhHHHHHHHHHHhcCChhH
Q 047480 86 SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG-LEF--DLFIRNALIHFYSIFGYINN 162 (719)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~~~g~~~~ 162 (719)
+.+.++|.++|-+|.+.. |-+..+-.++.+.+.+.|..+.|..+|..+.++. ... -......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467899999999999865 1344466677888889999999999999888652 111 12345567788899999999
Q ss_pred HHHHHccCCCC---ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhh----HHHHHHHHhccCCcHHHHHHHHH
Q 047480 163 AHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT----FVAMFSACTELNDPRIGKQFHAV 235 (719)
Q Consensus 163 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~ 235 (719)
|+.+|..+... -......|+..|-+..+|++|+++-+++...+-++..+- |.-+........+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999987663 345677789999999999999999999987664444332 22233333444556666666666
Q ss_pred HHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----
Q 047480 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV---- 311 (719)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~---- 311 (719)
+.+. .+..+.+--.+.+.+...|+++.|.+.++.+.+.|..
T Consensus 206 Alqa-----------------------------------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 206 ALQA-----------------------------------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred HHhh-----------------------------------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 5554 2333444555566666677777777777666654432
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 391 (719)
+...+..+|.+.|+.++.+..+.++.+.. ++...-..+........-.+.|.....+.+.+ .|+...+..||+.-
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~ 325 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhh
Confidence 34556667777777777777777666542 22222223333333334445555554433333 46666667777655
Q ss_pred Hhc---CChHHHHHHHhcC
Q 047480 392 AKC---GSIDTALSVFYKI 407 (719)
Q Consensus 392 ~k~---g~~~~A~~~~~~~ 407 (719)
... |...+....++.|
T Consensus 326 l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 326 LADAEEGRAKESLDLLRDM 344 (389)
T ss_pred hccccccchhhhHHHHHHH
Confidence 432 2333444444444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-07 Score=92.99 Aligned_cols=438 Identities=13% Similarity=0.109 Sum_probs=247.4
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--
Q 047480 80 MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA--LIHFYS-- 155 (719)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~-- 155 (719)
++-+..+|++++|.....++...+ |-|...+..-+-+..+.+.++.|..+.. +.+. ..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHH
Confidence 455667788888988888888776 2445566666667778888888874432 2221 111222 234444
Q ss_pred hcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhH-HHHHHHHhccCCcHHHHHHHH
Q 047480 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF-VAMFSACTELNDPRIGKQFHA 234 (719)
Q Consensus 156 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~ 234 (719)
+.+..|+|...++.....+..+...-...+.+.|++++|+++|+.+.+++..--..-. ..++.+-. ..-.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQV 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhH
Confidence 5688899998888555555556666667788889999999999988776532211111 11111110 0000
Q ss_pred HHHHhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc--------
Q 047480 235 VVYKNLGCVGS-NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-------- 305 (719)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m-------- 305 (719)
...+..+..+. +-..+....-. +...|++.+|+++++..
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~--------------------------------~i~~gky~qA~elL~kA~~~~~e~l 209 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACI--------------------------------LIENGKYNQAIELLEKALRICREKL 209 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHH--------------------------------HHhcccHHHHHHHHHHHHHHHHHhh
Confidence 01111001111 11112222233 34445555555555444
Q ss_pred CCCC-----h-----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHH---HHHHHccCChHH--HHHHHHH
Q 047480 306 DQRD-----L-----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV---LRACVGLGALDF--GKRLHQQ 370 (719)
Q Consensus 306 ~~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~--a~~~~~~ 370 (719)
.+.| . ..--.|.-.+...|+.++|..++...++.. .+|....... |.+...-.++-. ....++.
T Consensus 210 ~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~ 288 (652)
T KOG2376|consen 210 EDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKS 288 (652)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHH
Confidence 1100 0 011234445667788888888888887764 4444322222 122222111111 1111110
Q ss_pred -----------HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHH-HhCCChhHHHHHHH
Q 047480 371 -----------YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL-AQHGLGETSIAVFR 438 (719)
Q Consensus 371 -----------~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~ 438 (719)
.+.+. -......-+.++.+|. +..+.+.++-..++...|....=+.+..++ .+...+.+|.+++.
T Consensus 289 ~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 289 QVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 00000 0112233356666664 455677777777766433333333333333 22335778888888
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHH--------HHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 439 EMELMGLKPDG--VTFVTVLCACSHGGLVEEGKQFFE--------SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 439 ~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
..-+. .|.. +.....+.-....|+++.|.+++. .+.+.+.. +.+...++.+|.+.+.-+-|.+++.
T Consensus 366 ~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 366 QFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred HHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHH
Confidence 77664 4444 345555666778999999999998 55554433 4566678889988887766666665
Q ss_pred hC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 509 SM--------PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 509 ~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
+. +.++. ..+|.-+..--.++|+.++|...++++++.+|++......+..+|++. +.+.|..+-+.
T Consensus 442 ~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 442 SAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 54 22222 234444444456779999999999999999999999999999999876 45666655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-06 Score=87.25 Aligned_cols=507 Identities=12% Similarity=0.129 Sum_probs=300.1
Q ss_pred ChHHHHHHHHHHHHhC-CCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHH
Q 047480 20 SLKQALQIHGQIVHSG-LNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 97 (719)
++..-+..++..+..- +.. ..+|.-.+..... . |-++-+.+++++-.+-+...-+..|..+++.+++++|-+.+.
T Consensus 117 ~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~--~-~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 117 LITRTRRTFDRALRALPVTQHDRIWDLYLKFVES--H-GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHh--C-CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455566677666553 233 6788888887777 6 888999999998777666668889999999999999999998
Q ss_pred HhHhCCC-----CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhcCChhHHHHHHc
Q 047480 98 SMLSKGI-----VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL--EFD--LFIRNALIHFYSIFGYINNAHKVFE 168 (719)
Q Consensus 98 ~m~~~g~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~g~~~~A~~~f~ 168 (719)
....... .+.+...|.-+-....+..+.-...++ +.+++.|+ -+| ...|++|.+-|.+.|.++.|+.+|+
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8764221 113334455554444444433332222 33344443 234 3689999999999999999999998
Q ss_pred cCCCC--ChhhHHHHHHHHHc----------------CCCc------chHHHHHHHHHHCC-C----------CCChhhH
Q 047480 169 GSLAR--DLVSYNTLINGYAQ----------------VKEP------CPALWLFRKMQDSC-I----------QPDAFTF 213 (719)
Q Consensus 169 ~~~~~--~~~~~~~li~~~~~----------------~g~~------~~A~~~~~~m~~~g-~----------~pd~~t~ 213 (719)
+.... .+.-++.+-++|++ .|+. +-.+.-|+.+...+ + .-+..+|
T Consensus 273 eai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 273 EAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 74432 22223333333322 2222 22233344433321 0 1112222
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHHHhcCChHHHHHHHHHc-CC-----CCchHHHHH
Q 047480 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVG---SNMLLKTAVINMYAKCGLMNMAERVFSTM-GM-----SKSTAAWSS 284 (719)
Q Consensus 214 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-----~~~~~~~~~ 284 (719)
..-.. ...|+..+-...+..+++...... .--..|..+.+.|-..|+.+.|..+|++. .+ ..=..+|..
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA 430 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 22211 123455666677777777621111 12356889999999999999999999998 11 112457777
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---------------------CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC
Q 047480 285 MISGYTREGKIERARQLFDQMDQ---------------------RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343 (719)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~---------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 343 (719)
-..+=.+..+++.|.++.+.... ++...|.-.+..--..|-++....+|+++.+..+..
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT 510 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 77888888899999998887542 123345555555556677777777888887654332
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---cCChHHHHHHHhcCCCCCC-Chh-c-H
Q 047480 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK---CGSIDTALSVFYKIPKNLK-TVS-L-F 417 (719)
Q Consensus 344 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k---~g~~~~A~~~~~~~~~~~~-~~~-~-~ 417 (719)
..... ....-+....-++++.+++++-+.-...+.-..+|+.-+.-+.+ .-.++.|+.+|++..+..| ... + |
T Consensus 511 Pqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy 589 (835)
T KOG2047|consen 511 PQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY 589 (835)
T ss_pred HHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22211 11112233344566666665222222222223455655544443 2367888888888776623 211 1 1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChh---HHHHHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME---HYGCMVD 492 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~ 492 (719)
-.....=-..|-...|+.++++.... ++|.. ..|+..|.--...=-+...+.+|++.++. -|+.. ..--..+
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHH
Confidence 11111223467778888888886543 55544 36777766444443455667777777752 34432 2333456
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChhHHH
Q 047480 493 LLARDGRLDEAYGLIQSMP--YDA--NSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~~--~~p--~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
+=.+.|..+.|..++.-.. .+| +...|.+.=.--.+|||-+.-.
T Consensus 667 lEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 667 LETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYK 714 (835)
T ss_pred HhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHH
Confidence 6678899999998887652 233 5667888777778899944333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-08 Score=97.08 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 047480 75 IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN-NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD-LFIRNALIH 152 (719)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~ 152 (719)
.+-...+-+-++|++++|++.|.+.+... || +.-|.....+|...|+++.+.+.-...++.. |+ +-.+..-.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHH
Confidence 34556677888888888888888888776 77 6667777777778888888887777666554 33 345566667
Q ss_pred HHHhcCChhHHHH
Q 047480 153 FYSIFGYINNAHK 165 (719)
Q Consensus 153 ~y~~~g~~~~A~~ 165 (719)
++-..|++++|+.
T Consensus 192 A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 192 AHEQLGKFDEALF 204 (606)
T ss_pred HHHhhccHHHHHH
Confidence 7777788877653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.9e-09 Score=103.97 Aligned_cols=214 Identities=14% Similarity=0.046 Sum_probs=153.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHH
Q 047480 360 ALDFGKRLHQQYIENVVFGRN--IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAV 436 (719)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 436 (719)
..+.+..-+.+.+......++ ...+..+...|.+.|+.++|...|++..+. +.+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445555555534433333332 355777788899999999999999987765 66788999999999999999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CC
Q 047480 437 FREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YD 513 (719)
Q Consensus 437 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~ 513 (719)
|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.+++. . ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999997 46764 57888888899999999999999999863 455332222233455678899999999664 2 23
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLL-------DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
|+...|. ......|+...+ ..++.+. ++.|+.+.+|..++.+|...|++++|...+++..+.++
T Consensus 197 ~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWGWN---IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccHHH---HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332221 222335555444 2334443 45566778999999999999999999999999987543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-08 Score=98.48 Aligned_cols=192 Identities=13% Similarity=0.163 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH
Q 047480 279 TAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355 (719)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 355 (719)
...+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~------- 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL------- 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH-------
Confidence 34444455555555555555555554432 223344445555555555555555555554432 1122233
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 432 (719)
..+...|...|++++|.+.|++.... +.....|..+...+...|++++
T Consensus 103 -----------------------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 103 -----------------------------NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -----------------------------HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 33344444444444444444443321 1223344555555666666666
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 433 SIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 433 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
|...|++..+. .|+ ...+..+...+...|++++|..++++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 154 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 154 AEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666665553 222 334555555566666666666666666543 2233445555556666666666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-07 Score=98.80 Aligned_cols=201 Identities=14% Similarity=0.183 Sum_probs=130.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhc-----C-CCCC-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHH
Q 047480 315 AMISGYSQVGGFSQALELFGKMESL-----G-IHPD-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 387 (719)
.+...|...+++.+|..+|+++..- | ..|. ..++..+..+|.+.|++++|...++
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e------------------ 307 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE------------------ 307 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH------------------
Confidence 4556777788888888888877641 1 1111 1234444445555555555555444
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-CCChh-cHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKN-LKTVS-LFNSIISGLAQHGLGETSIAVFREMELM---GLKPDG----VTFVTVLCA 458 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a 458 (719)
.|.++++..... .+.+. .++.++..+...+++++|..++++..+. -+.++. -+++.|...
T Consensus 308 -----------~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 308 -----------RALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred -----------HHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 122222221111 13333 3566667777888888888888765541 133333 378888888
Q ss_pred HhccCcHHHHHHHHHHHH-Hc---CC--ccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHH
Q 047480 459 CSHGGLVEEGKQFFESML-NY---GI--KPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM--------PYDANS-VIWRAL 522 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~-~~---g~--~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~~~l 522 (719)
|.+.|++++|.++|++++ .. +- .+. ...++.|...|.+.+++++|.++|.+. +..|+. .+|..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 999999999999998887 21 11 122 456778888899999999888888775 234544 578999
Q ss_pred HHHHHhcCChhHHHHHHHHHhc
Q 047480 523 LAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~ 544 (719)
...|...|+++.|+++.+++..
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999888763
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.6e-09 Score=96.98 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACS 460 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 460 (719)
++--|-..|.+..+...|+.+|.+-.+. |-|+....-+...+-..++.++|.++|++..+. .| |.....++...|.
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYF 335 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccc
Confidence 3334444455555555555555554443 334444444555555566666666666666653 33 3335555555666
Q ss_pred ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM---PYDAN--SVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a 535 (719)
-.++++.|..++++++..|+ .+.+.|+.+.-++.-.+++|-++.-|++. ...|+ ..+|-.+.......||+..|
T Consensus 336 Y~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred cCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence 66667777777777666664 35566666666666666666666666654 12233 35677777667778999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.+.|+-++..+|++..+++.|+-.-.+.|+.++|+.++...++..
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999999999999999999987654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.6e-06 Score=88.60 Aligned_cols=511 Identities=13% Similarity=0.143 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--CCccHHHHH-----HHHHHcCCCchHHHHH
Q 047480 23 QALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFIWNTL-----MRGYSRSDSPQEALVL 95 (719)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~~ 95 (719)
.|.++-+.++..+.-..+-+..+.+.+.| . |-+..|.+-|..+.. +.++ .+.+ +-.|.-.-.++++++.
T Consensus 590 ~aPqVADAILgN~mFtHyDra~IAqLCEK--A-GL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~ec 665 (1666)
T KOG0985|consen 590 HAPQVADAILGNDMFTHYDRAEIAQLCEK--A-GLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLEC 665 (1666)
T ss_pred cchHHHHHHHhccccccccHHHHHHHHHh--c-chHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHH
Confidence 34444445554443332337778888888 8 888999988887753 2221 1111 2234444568889999
Q ss_pred HHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhcCChhHHH
Q 047480 96 YTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF-----------GLEFDLFIRNALIHFYSIFGYINNAH 164 (719)
Q Consensus 96 ~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~ 164 (719)
++.|+..+++ .|..+...+..-|...-..+...++|+..... ++..|+.+.-.-|.+-++.|++.+.+
T Consensus 666 lkaml~~Nir-qNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvE 744 (1666)
T KOG0985|consen 666 LKAMLSANIR-QNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVE 744 (1666)
T ss_pred HHHHHHHHHH-hhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHH
Confidence 9999998887 77776666666665544445555555544321 24567777778899999999999988
Q ss_pred HHHccCCC-------------------------------CChhhH------HHHHHHHHcCCCcchHHHHHHHHHHCCCC
Q 047480 165 KVFEGSLA-------------------------------RDLVSY------NTLINGYAQVKEPCPALWLFRKMQDSCIQ 207 (719)
Q Consensus 165 ~~f~~~~~-------------------------------~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 207 (719)
++-++-.- +|.+.| -..|..|++.=++...-.+...++.. .
T Consensus 745 Ricresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--d 822 (1666)
T KOG0985|consen 745 RICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--D 822 (1666)
T ss_pred HHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--C
Confidence 87754220 122221 12355565554444444444333322 2
Q ss_pred CChhhHHHHH-------------HHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHH---------
Q 047480 208 PDAFTFVAMF-------------SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM--------- 265 (719)
Q Consensus 208 pd~~t~~~ll-------------~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~--------- 265 (719)
-+......+| .-+-+.+++..-...++..+.. -..|..++|+|...|...++-.+
T Consensus 823 C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~e---G~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yY 899 (1666)
T KOG0985|consen 823 CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQE---GSQDPATHNALAKIYIDSNNNPERFLKENPYY 899 (1666)
T ss_pred CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhc---cCcchHHHhhhhheeecCCCChHHhcccCCcc
Confidence 2222222222 2222333333333344444443 35678899999998887776222
Q ss_pred ----HHHHHHHc-------------------CCCCchHHHHHHHHHHHhcCCHHHHHHHHhh-----------cC-----
Q 047480 266 ----AERVFSTM-------------------GMSKSTAAWSSMISGYTREGKIERARQLFDQ-----------MD----- 306 (719)
Q Consensus 266 ----a~~~~~~~-------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-----------m~----- 306 (719)
.-++.++- .+......|..+.+...+..+.+-=.+++.+ ..
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 11111111 1111122344444444555554443333321 11
Q ss_pred C-CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC-ChhHHHHHH----------------------------HHHH
Q 047480 307 Q-RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVL----------------------------RACV 356 (719)
Q Consensus 307 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll----------------------------~a~~ 356 (719)
+ .|...-..-..++...+-+.+-++++++..-..-.. ....+..++ ..+.
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai 1059 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAI 1059 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHh
Confidence 1 344445556778888888899999988876432111 111111111 1122
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHH
Q 047480 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436 (719)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 436 (719)
..+-+++|..+|.. +..+....+.||+ .-++++.|.+.-++..+ +..|..+..+-.+.|...+|++-
T Consensus 1060 ~~~LyEEAF~ifkk------f~~n~~A~~VLie---~i~~ldRA~efAe~~n~----p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKK------FDMNVSAIQVLIE---NIGSLDRAYEFAERCNE----PAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhhHHHHHHHHHHH------hcccHHHHHHHHH---HhhhHHHHHHHHHhhCC----hHHHHHHHHHHHhcCchHHHHHH
Confidence 22333444444431 1122233333332 23556666666555533 55799999999999999999987
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 047480 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516 (719)
Q Consensus 437 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~ 516 (719)
|-+ .-|...|..++..+++.|.+++-.+++...++..-+|.+. +.|+-+|++.+++.|-++++. .||.
T Consensus 1127 yik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~ 1194 (1666)
T KOG0985|consen 1127 YIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNV 1194 (1666)
T ss_pred HHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCc
Confidence 753 2366789999999999999999999999888766677766 468999999999999888775 3677
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
.-...+.+-|...|.++.|.-++.. .+.|..|+..+...|.+.-|...-++.
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7778888889999999988877654 467888888888888888887665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-08 Score=109.74 Aligned_cols=212 Identities=14% Similarity=0.025 Sum_probs=161.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC
Q 047480 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA---------KCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 429 (719)
++++|.+.++ ...+.. +.+...+..+..+|. ..+++++|...+++..+. +.+...|..+...+...|+
T Consensus 276 ~~~~A~~~~~-~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLT-QCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHH-HHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4578888888 444333 234455555555544 234578999999988776 6678889999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
+++|+..|++..+. .|+. ..+..+...+...|++++|...++++.+. .|+. ..+..+...+...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999985 5664 47777888899999999999999999874 4542 23334455677789999999999
Q ss_pred HhCC--CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 508 QSMP--YDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 508 ~~~~--~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.- ..|+. ..+..+..++...|+.++|...++++....|++......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8862 23544 446666666888999999999999998888888778888888888888 5888877777653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-06 Score=81.21 Aligned_cols=190 Identities=13% Similarity=0.097 Sum_probs=126.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCC-------hhHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 047480 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL-------GETSIAVFREMELMGLKPDGV-TFVTVLC 457 (719)
Q Consensus 386 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 457 (719)
.|+-.|.+.+++++|..+...+.. .++.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+ ---++.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 466678999999999999988876 333333322223444443 334555554443455444433 2233444
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHH-HhcCChhH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY-D-ANSVIWRALLAAC-RLHRNAKI 534 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~-~-p~~~~~~~ll~~~-~~~g~~~~ 534 (719)
++.-..++++.+-++..+..+-...|...+| +..+++..|++.+|+++|-.+.. + .|..+|.+++.-| .+.+..+.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 4455567889999998888765555666665 78899999999999999988742 1 4778888887765 56677877
Q ss_pred HHHHHHHHhccC-CCC-chhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 535 GEIAGQKLLDLE-PDH-GAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 535 a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
|..++ ++.+ |.+ ......+++-|.++|.+--|.+.|+.+.....
T Consensus 447 AW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 447 AWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 76544 4433 322 23455778899999999999999999886543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-05 Score=83.30 Aligned_cols=254 Identities=11% Similarity=0.088 Sum_probs=140.5
Q ss_pred HHHHHHhcc--ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHH
Q 047480 11 LLALLESCK--SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYS 84 (719)
Q Consensus 11 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 84 (719)
|..+++.-- .+..+......|++.-... +.+.-.=+..++- |+-++|......... .+.++|..+.-.+.
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l----g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL----GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcc----cchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 444454332 5667777777777755544 5555555555554 888888777665443 56678888888888
Q ss_pred cCCCchHHHHHHHHhHhCCCCCCCc-ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 047480 85 RSDSPQEALVLYTSMLSKGIVSPNN-FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163 (719)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~g~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 163 (719)
...++++|++.|...+..+ ||. ..+--+.-.-++.|+++.......+..+.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~---~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql------------------------- 138 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE---KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL------------------------- 138 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-------------------------
Confidence 8889999999999888876 443 33332222222333333332222222211
Q ss_pred HHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCC-CCCChhhHHHHHH------HHhccCCcHHHHHHHHHH
Q 047480 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFS------ACTELNDPRIGKQFHAVV 236 (719)
Q Consensus 164 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~i~~~~ 236 (719)
....-..|..+..++--.|+...|..++++..+.. -.|+...|.-... .....|.++.+.+.....
T Consensus 139 -------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 139 -------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred -------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 11234567777777777777777777777776543 2455554433221 123445555555444433
Q ss_pred HHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCchHHH-HHHHHHHHhcCCHHHHH-HHHhhcC
Q 047480 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAW-SSMISGYTREGKIERAR-QLFDQMD 306 (719)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~~~~-~~li~~y~~~g~~~~A~-~~f~~m~ 306 (719)
... +......--.-...+.+.++.++|..++... ...||..-| -.+..++.+-.+.-++. .+|....
T Consensus 212 e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 212 EKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred hhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 322 2233333444556677777777777777766 334444433 33444444333333333 5555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=96.30 Aligned_cols=234 Identities=12% Similarity=0.084 Sum_probs=175.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047480 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393 (719)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 393 (719)
+.|..+|.+.|.+.+|..-|+..... .|-..||..+-++|.+..+.+.|..++.+-+.+ ++.++.....+...+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 44556666666666666666666554 445556666666677777777776666633332 23444444555666777
Q ss_pred cCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 047480 394 CGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (719)
.++.++|.++|+...+. +.++.+..++..+|.-.++++-|+..|+++.+.|+. +...|+.+.-.|...+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 78888888888887665 567778888888999999999999999999999864 5667777777888999999999999
Q ss_pred HHHHHcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 473 ESMLNYGIKPQ--MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 473 ~~m~~~g~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
++....--.|+ ...|-.+.......|++.-|.+-|+-. ...| +...++.|.-.-.+.|+++.|..++..+..+.|+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99885444455 567888888888999999999999876 3334 4567888887788999999999999999999987
Q ss_pred Cchh
Q 047480 549 HGAH 552 (719)
Q Consensus 549 ~~~~ 552 (719)
-.+.
T Consensus 462 m~E~ 465 (478)
T KOG1129|consen 462 MAEV 465 (478)
T ss_pred cccc
Confidence 5443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-06 Score=91.09 Aligned_cols=399 Identities=15% Similarity=0.167 Sum_probs=204.5
Q ss_pred HHhccCCcHHHHHHHHHHH-------HhC-CCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCC
Q 047480 118 SCARLSSFKSGCQIHCHII-------KFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189 (719)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~-------~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 189 (719)
+++..|++..++.+|+... +.| -..+-+-..+++.+.. .++.+|..+|-+-. + -...|..|....
T Consensus 499 cfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lh 571 (1636)
T KOG3616|consen 499 CFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELH 571 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHH
Confidence 3444556666666655432 112 1122222333333332 45667777663311 1 122345555555
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047480 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269 (719)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~ 269 (719)
++++|+.+-+. .|.+.-...-.+-++++...|+-+.|-++ ..+..-..+-|+.|.+.|....|.+.
T Consensus 572 kwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el-----------k~sdgd~laaiqlyika~~p~~a~~~ 637 (1636)
T KOG3616|consen 572 KWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL-----------KESDGDGLAAIQLYIKAGKPAKAARA 637 (1636)
T ss_pred hHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh-----------ccccCccHHHHHHHHHcCCchHHHHh
Confidence 66666655332 12111111122334444455544444322 11122224556777777776666554
Q ss_pred HHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--------------------------hhH-HHHHHHHH
Q 047480 270 FSTM-GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL--------------------------VSW-TAMISGYS 321 (719)
Q Consensus 270 ~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~--------------------------~~~-~~li~~~~ 321 (719)
...- .+..|......+..++.+..-++.|-.+|+.+..++- +.. ......+.
T Consensus 638 a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~ 717 (1636)
T KOG3616|consen 638 ALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE 717 (1636)
T ss_pred hcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH
Confidence 3221 2333444444444444444444555555554443211 100 01112233
Q ss_pred hcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 047480 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401 (719)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 401 (719)
+.|+++.|+..|-+... ..-.+.+......+.+|..+++ -+.... ...-.|.-+.+-|+..|+++.|+
T Consensus 718 ~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ild-niqdqk--~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILD-NIQDQK--TASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHH-Hhhhhc--cccccchHHHHHhccchhHHHHH
Confidence 44445555444433221 1122334445566667777766 444332 22234556677788888888888
Q ss_pred HHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc
Q 047480 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481 (719)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 481 (719)
++|.+... ++-.|..|.+.|++++|.++-.+.. |.......|..-..-.-..|.+.+|.++|-.+- .
T Consensus 786 ~lf~e~~~-------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~ 852 (1636)
T KOG3616|consen 786 ELFTEADL-------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----E 852 (1636)
T ss_pred HHHHhcch-------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----C
Confidence 88765443 5667777888888888877765543 222223345544445566677777776663221 3
Q ss_pred cChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
|+. -|.+|-+.|..++.+++..+-.-+.-..+-..+..-+...|++..|+.-|-++ .-+-.-.++|.
T Consensus 853 p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk 919 (1636)
T KOG3616|consen 853 PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYK 919 (1636)
T ss_pred chH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhh
Confidence 442 35677788888887777776532222234455555566777777777765543 33556677888
Q ss_pred hcCChHHHHHHHHH
Q 047480 562 ETYRWEEARQVRKL 575 (719)
Q Consensus 562 ~~g~~~~A~~~~~~ 575 (719)
..+.|++|.++-+.
T Consensus 920 ~s~lw~dayriakt 933 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKT 933 (1636)
T ss_pred hhhhHHHHHHHHhc
Confidence 88888888776554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.2e-08 Score=88.76 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=140.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDL 493 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 493 (719)
+...+.-+|.+.|+...|..-+++.++. .|+.. ++..+...|.+.|..+.|.+.|+...+. .|+ ..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3555677899999999999999999984 67664 8888999999999999999999999863 444 7788899999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 047480 494 LARDGRLDEAYGLIQSMPYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (719)
++..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|+..+++.++++|+.+.+...+.....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999844443 457888877778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 047480 570 RQVRKLMDDSGI 581 (719)
Q Consensus 570 ~~~~~~m~~~~~ 581 (719)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-06 Score=91.18 Aligned_cols=544 Identities=12% Similarity=0.010 Sum_probs=302.3
Q ss_pred HHHHHHHHHHhCCCh--hchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHHHH
Q 047480 24 ALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTS 98 (719)
Q Consensus 24 ~~~~~~~~~~~~~~~--~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 98 (719)
+..+|..+....+++ ...|..|-.-|.. . .+...|.+.|++.-+ -+..+|......|++..+++.|..+.-.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd--~-~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRD--S-DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHH--H-HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 344444444444443 4667778788887 6 677889999988755 4566788999999999999999988433
Q ss_pred hHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhH
Q 047480 99 MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178 (719)
Q Consensus 99 m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 178 (719)
.-+......-...|..+.-.+...++...+..-|+...+.. +-|...|..|..+|.++|++..|.++|++...-++.+|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 32222100011223333334556778888888888887766 56788999999999999999999999987665444433
Q ss_pred HH---HHHHHHcCCCcchHHHHHHHHHHC------CCCCChhhHHHHHHHHhccCCc-------HHHHHHHHHHHHhhCC
Q 047480 179 NT---LINGYAQVKEPCPALWLFRKMQDS------CIQPDAFTFVAMFSACTELNDP-------RIGKQFHAVVYKNLGC 242 (719)
Q Consensus 179 ~~---li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~-------~~a~~i~~~~~~~~~~ 242 (719)
-. .....+..|.+.+|++.+...... +..--..++......+...|-. +...+.+...... .
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h--~ 708 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH--S 708 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--h
Confidence 22 122345678888888888776532 1111112222222222222222 2222222222222 1
Q ss_pred CCCchHHHH-------------------HHHHHHHh----cCCh---HH---HHHHH-HHcCCCCchHHHHHHHHHHHh-
Q 047480 243 VGSNMLLKT-------------------AVINMYAK----CGLM---NM---AERVF-STMGMSKSTAAWSSMISGYTR- 291 (719)
Q Consensus 243 ~~~~~~~~~-------------------~li~~y~~----~g~~---~~---a~~~~-~~~~~~~~~~~~~~li~~y~~- 291 (719)
...+...|- .++..+.+ .+.. +- +.+.+ ....+..+..+|..|+..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 111111111 11111111 1111 00 00000 000222234445555444443
Q ss_pred ---cC----CHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCCh
Q 047480 292 ---EG----KIERARQLFDQMD---QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 292 ---~g----~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
+| +...|...+.... ..+...||.|.-. ...|++.-|...|-+-.... +-...+|..+--.|....++
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccH
Confidence 12 2234444454433 2566677766544 44456666666665554432 33455666666666777778
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc-----CCCC-CCChhcHHHHHHHHHhCCChhHHHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-----IPKN-LKTVSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~-----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 435 (719)
+.|.+.+. ...... +.+...|-...-.-...|+.-++..+|.. +.+. .++..-|-....-..++|+.++-+.
T Consensus 867 E~A~~af~-~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 867 EHAEPAFS-SVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHhhHHHH-hhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 88888777 444332 23333333332333456777777777765 1221 3455556666666677777666555
Q ss_pred HHHHHHHc---------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHH----HHHHHHhcCCHH
Q 047480 436 VFREMELM---------GLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGC----MVDLLARDGRLD 501 (719)
Q Consensus 436 ~~~~m~~~---------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~----li~~~~~~g~~~ 501 (719)
.-++.... |.+-+...|.......-+.+....+.+...+++ =...+-+...|+. +...+...|.++
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 54443321 223334677777777777788877777766654 1112344555553 334555678888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA---HYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 502 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.|..-+...+..-|..+-.+-++. .-.++++.+...|++++.+..++.. ....++.....+|.-+.|...+-+...
T Consensus 1025 ~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1025 SAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 887777666655555555555544 3457899999999999986554433 233444455667777778776665554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.4e-06 Score=85.27 Aligned_cols=218 Identities=17% Similarity=0.136 Sum_probs=161.2
Q ss_pred HHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHH
Q 047480 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233 (719)
Q Consensus 154 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 233 (719)
+...|+++.|..-|-+.. ..-..|.+-.....+.+|+.+++.++... .-..-|..+..-|+..|+++.|+++|
T Consensus 716 l~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHH
Confidence 344566666665553211 11123455567788999999999887653 23345777888899999999999998
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 047480 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312 (719)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 312 (719)
-..-. ++--|.+|.+.|++++|+++-.+. |.+.....|-+-..-.-+.|++.+|++++-.+..|+.
T Consensus 789 ~e~~~-----------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-- 855 (1636)
T KOG3616|consen 789 TEADL-----------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-- 855 (1636)
T ss_pred Hhcch-----------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH--
Confidence 76533 366799999999999999999887 7777777888888888899999999999998888875
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
-|..|-+.|..+..+++..+-....+ ..|-..+..-+...|++..|..-|- . ..-+.+-++||-
T Consensus 856 ---aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~fl-e---------a~d~kaavnmyk 919 (1636)
T KOG3616|consen 856 ---AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFL-E---------AGDFKAAVNMYK 919 (1636)
T ss_pred ---HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHH-h---------hhhHHHHHHHhh
Confidence 47789999999999988876532211 2345556677778899988887654 1 123567889999
Q ss_pred hcCChHHHHHHHhcC
Q 047480 393 KCGSIDTALSVFYKI 407 (719)
Q Consensus 393 k~g~~~~A~~~~~~~ 407 (719)
..+-+++|.++-+.-
T Consensus 920 ~s~lw~dayriakte 934 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTE 934 (1636)
T ss_pred hhhhHHHHHHHHhcc
Confidence 999999999887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-06 Score=86.66 Aligned_cols=83 Identities=14% Similarity=0.032 Sum_probs=56.3
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHH
Q 047480 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWL 197 (719)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 197 (719)
..+++..+....+.+++ +++....+.....-.+...|+.++|......... ++.+.|+.+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45566667776666666 3333334444333344556888888877765444 4567899888888888899999999
Q ss_pred HHHHHHC
Q 047480 198 FRKMQDS 204 (719)
Q Consensus 198 ~~~m~~~ 204 (719)
|+.....
T Consensus 98 y~nAl~~ 104 (700)
T KOG1156|consen 98 YRNALKI 104 (700)
T ss_pred HHHHHhc
Confidence 9888764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-05 Score=86.56 Aligned_cols=348 Identities=14% Similarity=0.138 Sum_probs=204.5
Q ss_pred HHHHHHHCCCC--CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCC------------
Q 047480 197 LFRKMQDSCIQ--PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL------------ 262 (719)
Q Consensus 197 ~~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~------------ 262 (719)
+.++....++. -|+...+...+++...+-+.+-.++++.++-..+.+..+....|.|+-...|...
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn 1048 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN 1048 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc
Confidence 44444443332 3445555666777777777777777777665544555555566655554444433
Q ss_pred ---------------hHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 047480 263 ---------------MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327 (719)
Q Consensus 263 ---------------~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 327 (719)
+++|..+|++. ..+....+.||+- -+.++.|.+.-++..+| ..|..+..+-.+.|...
T Consensus 1049 yDa~~ia~iai~~~LyEEAF~ifkkf--~~n~~A~~VLie~---i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1049 YDAPDIAEIAIENQLYEEAFAIFKKF--DMNVSAIQVLIEN---IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHh--cccHHHHHHHHHH---hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchH
Confidence 45555555543 2233333333332 24455555555554443 46888888888889888
Q ss_pred HHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
+|++-|-+. -|+..|..++.++.+.|.++.-..++. +..+..-.|. +-+.||-+|++.+++.+-++.+..-
T Consensus 1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~-MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gp 1192 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL-MARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGP 1192 (1666)
T ss_pred HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH-HHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCC
Confidence 888877543 256778889999999999998888887 7777664444 4467888899988888776655321
Q ss_pred CCC---------------------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 408 PKN---------------------LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 408 ~~~---------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
... ..++.-|..+...+...|+++.|.+.-++. -+..||..+-.+|...+.+.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 000 112334566666666666666666554432 23457777777777665543
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
-| +|.-.++.....-..-|+..|-..|.++|-+.+++.. +.+ ..-..++-|.-.|.+.. .++-.+.++-...
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWS 1340 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 32 2333334445566677888888888888888888765 332 23344554444444432 3333322222221
Q ss_pred cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
....--++.++..+.-|.|..-++.+-.
T Consensus 1341 -----RvNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1341 -----RVNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred -----hcchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0112235666667777777766655543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-07 Score=89.55 Aligned_cols=229 Identities=8% Similarity=-0.072 Sum_probs=150.2
Q ss_pred CChhHHHHHHHHhHhcC-CCCC--hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 047480 324 GGFSQALELFGKMESLG-IHPD--EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 324 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 400 (719)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+. ...+.. +.+...++.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~-~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFS-QALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666432 2222 2345555666777788888887777 444433 35577888888889999999999
Q ss_pred HHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 047480 401 LSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479 (719)
Q Consensus 401 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 479 (719)
...|++..+. +.+...|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 9999887665 456778888888999999999999999998874 565542222222344567899999999776532
Q ss_pred CccChhHHHHHHHHHHhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-c
Q 047480 480 IKPQMEHYGCMVDLLARDGRLD--EAYGLIQSM-PY----DA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH-G 550 (719)
Q Consensus 480 ~~p~~~~~~~li~~~~~~g~~~--eA~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~ 550 (719)
..|+...+ .++..+ .|+.. ++.+.+.+. .. .| ....|..+...+...|+.++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23332222 333333 44443 333333321 11 12 23578888889999999999999999999999744 4
Q ss_pred hhHHHHHHHH
Q 047480 551 AHYVLLSNML 560 (719)
Q Consensus 551 ~~~~~l~~~~ 560 (719)
.+-..++...
T Consensus 272 e~~~~~~e~~ 281 (296)
T PRK11189 272 EHRYALLELA 281 (296)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00019 Score=76.66 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 531 NAKIGEIAGQKLLDLEPDHG------AHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+..+++.-.+-+++ +|..+ ..|..|+..|....+|..|.+.+++|..+
T Consensus 1306 D~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred hHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 44444444444443 34332 46889999999999999999999999875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.4e-05 Score=74.07 Aligned_cols=298 Identities=12% Similarity=0.030 Sum_probs=190.5
Q ss_pred CCCCchHHHHHHHHHHHh--cCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChh
Q 047480 274 GMSKSTAAWSSMISGYTR--EGKIERARQLFDQMD-----QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~--~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 346 (719)
..+|.......-+.+|+. .++-..|...|-... ..|+.....+...+...|+..+|+..|++.+.. .|+..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i 266 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNV 266 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhh
Confidence 334444444444444444 344444444443222 357778889999999999999999999988754 44433
Q ss_pred HHH-HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHH
Q 047480 347 TMV-AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGL 424 (719)
Q Consensus 347 t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~ 424 (719)
+-. ...-.+...|+.+....+.............. |-.-........+++.|..+-++..+. ++++..+-.-...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~--wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH--WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh--hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 211 11222345666666665555233322111111 111122233456777887777765553 45566666556778
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHH-HHHHh-cCCHH
Q 047480 425 AQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV-DLLAR-DGRLD 501 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~-~g~~~ 501 (719)
.+.|++++|.=.|+..+. +.|.. ..|..|+..|...|...+|.-.-+...+. +..+..+...+. +.+.- ..--+
T Consensus 345 ~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 888999999988988876 46544 58999999999999998888776665532 233444444442 22222 22346
Q ss_pred HHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 502 EAYGLIQSM-PYDANSV-IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 502 eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|.+++++. ..+|+-. ..+.+...|...|..+.+..++++.+...||+ ..+..|++.+...+.+++|.+.|......
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 788888775 6677654 44555566888899999999999999888875 67888999999999999998888877643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-06 Score=86.44 Aligned_cols=442 Identities=15% Similarity=0.064 Sum_probs=213.5
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~l 115 (719)
..+|-.|.=+..+ | |+++.+-+.|++... -....|+.+-..|+..|.-..|+.+.+.-......|+|...+-..
T Consensus 323 ~ai~d~Lt~al~~--~-g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 323 AAIFDHLTFALSR--C-GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred HHHHHHHHHHHHH--H-HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 6788888888888 8 999999999988643 344569999999999999999999988866555443455555555
Q ss_pred HHHHh-ccCCcHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCC
Q 047480 116 LNSCA-RLSSFKSGCQIHCHIIKFG--L--EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190 (719)
Q Consensus 116 l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 190 (719)
-+.|. +.+.++++..+-.+++... . ......+-.+.-+|...-. ...+|.- +...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~se------R~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSE------RDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHH------HHHH
Confidence 56665 4567777777666666521 1 1222333333333332110 0000000 0001
Q ss_pred cchHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047480 191 PCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269 (719)
Q Consensus 191 ~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~ 269 (719)
..++++.+++..+.+ -.|+..-|.++ -++..++++.|.+...+..+. +-..+...|..|.-.+...+++.+|+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l--~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALAL--NRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 123444444443321 12222222222 123344455555555555544 3344444555555555555555555554
Q ss_pred HHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC--Ch
Q 047480 270 FSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP--DE 345 (719)
Q Consensus 270 ~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~ 345 (719)
.+.. ....|......-+..-...++.++|......+.. .|-.. .+..+.++-...+++...+.-.--.| ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 4443 1111111111112222234555555555444321 11110 11122222333344443332110011 11
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCC------hhcHHH
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT------VSLFNS 419 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~------~~~~~~ 419 (719)
.|+..+..-... .....+.+ .....+...+. ++ ...|..
T Consensus 611 s~sr~ls~l~a~-------------~~~~~~se--------------------~~Lp~s~~~~~--~~~~~~~~~~lwll 655 (799)
T KOG4162|consen 611 STSRYLSSLVAS-------------QLKSAGSE--------------------LKLPSSTVLPG--PDSLWYLLQKLWLL 655 (799)
T ss_pred hhhHHHHHHHHh-------------hhhhcccc--------------------cccCcccccCC--CCchHHHHHHHHHH
Confidence 222222221110 00000000 00000111111 11 123444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhc
Q 047480 420 IISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARD 497 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 497 (719)
....+...++.++|...+.+.... .|- ...|......+...|..++|.+.|..... +.|+ +....++..++.+.
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHh
Confidence 445555555555555554444432 222 22344343445556666666666666554 3444 55666666777777
Q ss_pred CCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 498 GRLDEAYG--LIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 498 g~~~eA~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
|+..-|.. ++..+ ...| +...|-.+.....+.|+.+.|-..|..+.++++.+|.
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 76555555 66555 4444 5567777777777778888777777777777776653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=79.86 Aligned_cols=169 Identities=14% Similarity=0.076 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 047480 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCA 458 (719)
Q Consensus 381 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 458 (719)
..++..+...|.+.|+.+.|.+.|++.... +.+-...|....-+|..|++++|...|++....-.-|.. .||..+.-+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C 148 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC 148 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence 334455556666667777777777665544 466667777777788888888888888887764322322 467777766
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a 535 (719)
..+.|+.+.|..+|++.++. .|+ ....-.+.......|++-.|..+++.. ...+...+.-..|..-...||.+.+
T Consensus 149 al~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 67788888888888888763 344 556667778888888888888888776 2335555555555666777888888
Q ss_pred HHHHHHHhccCCCCch
Q 047480 536 EIAGQKLLDLEPDHGA 551 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~ 551 (719)
-+.-.++....|....
T Consensus 227 ~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 227 QRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhCCCcHH
Confidence 8877777788887643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-05 Score=82.11 Aligned_cols=280 Identities=12% Similarity=0.106 Sum_probs=184.7
Q ss_pred HhhccCCCCChHHHHHHhccCCC--CCccHH-HHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHh----
Q 047480 48 FFALSGCKNGLFRSRILFSQIDN--PNIFIW-NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA---- 120 (719)
Q Consensus 48 ~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~---- 120 (719)
.+.. . |+++.|...++.... .|..+| ......+.+.|+.++|..+|..++..+ |+...|-..+..|.
T Consensus 13 il~e--~-g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 13 ILEE--A-GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHH--C-CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhc
Confidence 3455 6 999999999877654 555444 567788889999999999999999998 88887777766665
Q ss_pred c--cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH-HHHHHccCCCCCh-hhHHHHHHHHHcCCCcchHHH
Q 047480 121 R--LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN-AHKVFEGSLARDL-VSYNTLINGYAQVKEPCPALW 196 (719)
Q Consensus 121 ~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~-A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~ 196 (719)
. ..+.+.-.++++.+...- |.......+.-.+..-..+.. +......+..+.+ ..++.|-..|.......-..+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 2 224566777787776543 221111111111111112222 2223333444444 456666666665555555555
Q ss_pred HHHHHHHC----C----------CCCCh--hhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhc
Q 047480 197 LFRKMQDS----C----------IQPDA--FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260 (719)
Q Consensus 197 ~~~~m~~~----g----------~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~ 260 (719)
++...... + -.|+. .++..+...+...|+.+.|....+.+++. .|..+..|..-...|-+.
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHC
Confidence 55555432 1 12333 24455566677899999999999999887 466688899999999999
Q ss_pred CChHHHHHHHHHc-CCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------hH--HHHHHHHHhcCCh
Q 047480 261 GLMNMAERVFSTM-GMSK-STAAWSSMISGYTREGKIERARQLFDQMDQRDLV----------SW--TAMISGYSQVGGF 326 (719)
Q Consensus 261 g~~~~a~~~~~~~-~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----------~~--~~li~~~~~~g~~ 326 (719)
|++++|.+.++.. .+++ |-..-+-.+..+.++|++++|.+++....+++.. .| ..-..+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999887 4444 4455566677788999999999998887765421 33 3345778899999
Q ss_pred hHHHHHHHHhHh
Q 047480 327 SQALELFGKMES 338 (719)
Q Consensus 327 ~~A~~~~~~m~~ 338 (719)
..|+.-|....+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888877766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00021 Score=73.88 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHH--HcCCCchHHHHHH
Q 047480 20 SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY--SRSDSPQEALVLY 96 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~ 96 (719)
+++++.+.-..++..+.++ +.+...++.. .+ . +.+++|..+.+.-+...+...-.+=.+| .+.+..++|+..+
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvVal-Iq--~-~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVAL-IQ--L-DKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhh-hh--h-hHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 6788888888888887666 4555555554 44 4 7888888776654431111111123333 4577888888887
Q ss_pred HHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHccCCCCCh
Q 047480 97 TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE-FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175 (719)
Q Consensus 97 ~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~ 175 (719)
+ |..+.|..+...-...|-+.+++++|..+|..+.+.+.+ .+...-..++.+-. .-.+. +.+..+....
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPE 172 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCc
Confidence 7 322133445555566677888888888888888877642 22233333332211 11121 3444444433
Q ss_pred hhHHHH---HHHHHcCCCcchHHHHHHHH
Q 047480 176 VSYNTL---INGYAQVKEPCPALWLFRKM 201 (719)
Q Consensus 176 ~~~~~l---i~~~~~~g~~~~A~~~~~~m 201 (719)
.+|..+ .-.+...|++.+|+++++..
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344333 33455678888888888776
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=96.01 Aligned_cols=220 Identities=11% Similarity=0.008 Sum_probs=169.1
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSI 434 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 434 (719)
.+.|++..|.-.|+ ...+.. +.+...|.-|.......++-..|+..+++..+. +.|....-+|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafE-AAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFE-AAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHH-HHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 45666777776776 343333 356667777777777777777888888777665 567778888888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHHHHHhcCCHHHHHH
Q 047480 435 AVFREMELMGLK--------PDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYG 505 (719)
Q Consensus 435 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 505 (719)
..++.-+....+ ++..+-.. ..+.....+....++|-++. ..+..+|.....+|.-+|.-.|.++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887664211 01110000 12233334556667777776 66667889999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 506 LIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 506 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
-|+.+ ..+| |...||-|....+...+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-.....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99987 5677 67899999999999999999999999999999999999999999999999999999998877653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.8e-06 Score=86.76 Aligned_cols=281 Identities=12% Similarity=0.080 Sum_probs=179.7
Q ss_pred HHHHhcCChHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHH-HHHHHHHh-----cC
Q 047480 255 NMYAKCGLMNMAERVFSTM-G-MSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWT-AMISGYSQ-----VG 324 (719)
Q Consensus 255 ~~y~~~g~~~~a~~~~~~~-~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~-~li~~~~~-----~g 324 (719)
..+...|++++|+..+.+. . +.....+.......|.+.|+.++|..+|..+.+ |+-..|. .+..+... ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 4456677888888877776 3 334455667777888888888888888888875 4444443 33333311 12
Q ss_pred ChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChH-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047480 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD-FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403 (719)
Q Consensus 325 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 403 (719)
+.+...++|+++... -|.......+.-.+.....+. .+..+.. ...+.|++ .+++.|-..|......+-..++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~-~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLR-PQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHH-HHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 456677778877654 243333322222222211222 2223333 34445543 3455666666644444444444
Q ss_pred HhcCC----------------CCCCChhcH--HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCc
Q 047480 404 FYKIP----------------KNLKTVSLF--NSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGL 464 (719)
Q Consensus 404 ~~~~~----------------~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 464 (719)
+.... ..+|....| .-+...|-..|++++|+++.++.++. .|..+ .|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 43321 113444455 44566788999999999999999985 67754 77788888999999
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CC--C----HHHHHHH--HHHHHhcCChh
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY---DA--N----SVIWRAL--LAACRLHRNAK 533 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~---~p--~----~~~~~~l--l~~~~~~g~~~ 533 (719)
+++|.+..+...... .-|...-+-.+..+.|+|++++|.+++..... .| | ...|--+ ..+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999998654 34566777778889999999999998877632 22 1 1245433 45588999999
Q ss_pred HHHHHHHHHhc
Q 047480 534 IGEIAGQKLLD 544 (719)
Q Consensus 534 ~a~~~~~~~~~ 544 (719)
.|++.+..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99998877764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-07 Score=89.84 Aligned_cols=244 Identities=10% Similarity=0.063 Sum_probs=135.0
Q ss_pred HhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 047480 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 400 (719)
.-.|++..++.-.+ .....-..+..+...+.+++...|+.+.+.. .+.+.. .|.......+...+...++-+.+
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~----ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS----EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH----HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH----HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 34456666654444 2111111122333444555555565443221 121222 34444333333333332344455
Q ss_pred HHHHhcCCCC--C-CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 401 LSVFYKIPKN--L-KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 401 ~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
..-++..... . .+....-.....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5545443322 1 12211112223455567788877776532 2445556666777788888888888888875
Q ss_pred cCCccChhHHHHHHH----HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 478 YGIKPQMEHYGCMVD----LLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 478 ~g~~p~~~~~~~li~----~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
. ..| .+...|.. .+.-...+.+|..+|+++. ..+++.+.+.+..+....|++++|+..++++++.+|+++.
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 3 233 22222333 3322346888888888873 3467777788888888889999999999999888998888
Q ss_pred hHHHHHHHHhhcCCh-HHHHHHHHHHHhC
Q 047480 552 HYVLLSNMLAETYRW-EEARQVRKLMDDS 579 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 579 (719)
+...++-+....|+. +.+.+++.+++..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888888888888888 6677788887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-05 Score=85.10 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=118.0
Q ss_pred HHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 399 TALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 399 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
.|...+.+..+. ..+...||+|.-. ...|++.-|...|-+-... .+-+..+|..+.-.|....+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 455555554332 3677788887665 6667777777777665553 234556888888788889999999999988875
Q ss_pred cCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHH----------HH
Q 047480 478 YGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-------PYDANSVIWRALLAACRLHRNAKIGEI----------AG 539 (719)
Q Consensus 478 ~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~~ 539 (719)
+.|+ ...|-...-.....|+.-++..+|..- +.-|+...|-....-...+|+.++-+. +.
T Consensus 879 --LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 --LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred --cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 3344 566655555566778888888887652 123555566555555566666655444 34
Q ss_pred HHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
++.+.-.|+...+|...+...-+.+.+++|.+.....
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556678998889999999998888888887776554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-05 Score=82.79 Aligned_cols=296 Identities=9% Similarity=-0.081 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhh---HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHH---
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ---RDLVS---WTAMISGYSQVGGFSQALELFGKMESLGIHPD-EVTMVA--- 350 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~--- 350 (719)
.+..+...|...|+.+++.+.+....+ ++... .......+...|++++|.+.+++..+. .|+ ...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 344444455555555554444443321 11111 122233456677788888887777665 333 223221
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC
Q 047480 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 351 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 429 (719)
........+....+.+... . .....+........+...+...|++++|...+++.... +.+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLP-L-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHh-c-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 1111112344444444444 2 11111222333445556777888888888888877665 4556677777778888888
Q ss_pred hhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-ccChhHH-H--HHHHHHHhcCCHHH
Q 047480 430 GETSIAVFREMELMGL-KPDG--VTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQMEHY-G--CMVDLLARDGRLDE 502 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~e 502 (719)
+++|+..+++...... .|+. ..+..+...+...|++++|..++++...... .+..... + .+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 8888888887776421 1222 2344566677788888888888888753221 1111111 1 23333444443322
Q ss_pred HHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---------CCchhHHHHHHHHhhcCCh
Q 047480 503 AYGL---IQSM-PYDAN---SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP---------DHGAHYVLLSNMLAETYRW 566 (719)
Q Consensus 503 A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~ 566 (719)
+.+. .... +..|+ .........++...|+.+.|...++.+....- .........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 11011 12222344456777888888888877654211 1234566778888999999
Q ss_pred HHHHHHHHHHHhCC
Q 047480 567 EEARQVRKLMDDSG 580 (719)
Q Consensus 567 ~~A~~~~~~m~~~~ 580 (719)
++|.+.+.......
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9e-06 Score=82.86 Aligned_cols=437 Identities=13% Similarity=0.085 Sum_probs=225.4
Q ss_pred CChHHHHHHhccC---CCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCC-cccHHHHHHHHhccCCcHHHHHH
Q 047480 56 NGLFRSRILFSQI---DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN-NFTFPFVLNSCARLSSFKSGCQI 131 (719)
Q Consensus 56 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 131 (719)
|+++.|.+.|-.. ..+|.+.|+.-..+|++.|++.+|++=-.+-++.. |+ ...|+....+....|++++|..-
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccHHHHHHH
Confidence 8888888888664 23677888888888888888888888777766665 43 55788888888888888888888
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHH-HHHHccCCCCChhhHHHHH-----HHHHcCCCcchHHHHHHHHHHCC
Q 047480 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNA-HKVFEGSLARDLVSYNTLI-----NGYAQVKEPCPALWLFRKMQDSC 205 (719)
Q Consensus 132 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g 205 (719)
|..-++.. +.+...++.|..++. .+.+ .+.|. ++..|..+. +.+...-.+..-+..+..
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~----- 157 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK----- 157 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc-----
Confidence 88777665 566777777877771 1111 11221 111121111 111111111111111100
Q ss_pred CCCChh-h---HHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChH-HHHHHHHHcCCCCchH
Q 047480 206 IQPDAF-T---FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN-MAERVFSTMGMSKSTA 280 (719)
Q Consensus 206 ~~pd~~-t---~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~a~~~~~~~~~~~~~~ 280 (719)
.|+.. . ...++.+.......+.....-....-..++..|. .+..+.. ...+..++.....-..
T Consensus 158 -~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~~~~~~~~d~~ee~~~k~~a~ 225 (539)
T KOG0548|consen 158 -NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEHNGFPIIEDNTEERRVKEKAH 225 (539)
T ss_pred -CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccCCCCCccchhHHHHHHHHhhh
Confidence 01000 0 0011111111100000000000000000000000 0000000 0000000000000011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHcc
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (719)
-...+.++.-+..+++.|.+-++...+ .++.-++....+|...|.+.++...-....+.|-. ...-|+.+..+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~---- 300 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA---- 300 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH----
Confidence 123344555555555555555554433 22223445555666666666665555544333210 00111111110
Q ss_pred CChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHH
Q 047480 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438 (719)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 438 (719)
...+..+|.+.++++.|...|.+.....++... ..+....++++...+
T Consensus 301 -------------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 301 -------------------------LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAE 348 (539)
T ss_pred -------------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHH
Confidence 111344667778888888888775543222111 122233444444444
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 047480 439 EMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS 516 (719)
Q Consensus 439 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~ 516 (719)
...- +.|+.. -...-.+.+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+.+|++=.+.. ...|+.
T Consensus 349 ~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 349 RKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred HHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 4333 344432 22233566778899999999999998654 445888999999999999999888766654 344543
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047480 517 -VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562 (719)
Q Consensus 517 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (719)
..|..-..++....+++.|...|++.++++|++......+...+..
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 3455555556667889999999999999999987766666665554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0014 Score=77.79 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=44.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----CCh----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCC---CC--ChhHHHHHHH
Q 047480 287 SGYTREGKIERARQLFDQMDQ----RDL----VSWTAMISGYSQVGGFSQALELFGKMESLGI---HP--DEVTMVAVLR 353 (719)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~ 353 (719)
..+...|++++|...+++..+ .+. ..++.+...+...|++++|...+.+.....- .+ ...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345567777777777665432 111 2334455556667777777777776653210 11 1123333444
Q ss_pred HHHccCChHHHHHHHH
Q 047480 354 ACVGLGALDFGKRLHQ 369 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~ 369 (719)
.+...|+++.|.+.+.
T Consensus 540 ~~~~~G~~~~A~~~~~ 555 (903)
T PRK04841 540 ILFAQGFLQAAYETQE 555 (903)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 5556666666666655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00011 Score=69.33 Aligned_cols=384 Identities=10% Similarity=0.036 Sum_probs=193.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCCC---ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHH-HHHHhc
Q 047480 147 RNALIHFYSIFGYINNAHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM-FSACTE 222 (719)
Q Consensus 147 ~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~ 222 (719)
+++.+..+.+..++++|++++..-.++ +......|..+|....++..|-+.++++-.. -|...-|..- ...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 445555556777888888877654443 4456667777777888888888888877653 3444444211 112223
Q ss_pred cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHH--HhcCCHHHHHH
Q 047480 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY--TREGKIERARQ 300 (719)
Q Consensus 223 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y--~~~g~~~~A~~ 300 (719)
.+.+..|. +++..++-.++...-..-+.+- -..+++..++.
T Consensus 91 A~i~ADAL-------------------------------------rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rs 133 (459)
T KOG4340|consen 91 ACIYADAL-------------------------------------RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRS 133 (459)
T ss_pred hcccHHHH-------------------------------------HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHH
Confidence 33444444 4444443332222221111111 12445555555
Q ss_pred HHhhcC-CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc-CCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCC
Q 047480 301 LFDQMD-QRDLVSWTAMISGYSQVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378 (719)
Q Consensus 301 ~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 378 (719)
+.++.+ +.+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+. ..+.++.+.|....+ .+...|+.
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iS-EIieRG~r 210 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHIS-EIIERGIR 210 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHH-HHHHhhhh
Confidence 555554 233333333333344555555555555555442 2222 233333322 223444555554444 33333222
Q ss_pred CC---------------------hhHHHHHH-------HHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhC
Q 047480 379 RN---------------------IFLTTAVI-------DMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQH 427 (719)
Q Consensus 379 ~~---------------------~~~~~~li-------~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~ 427 (719)
.. ...-++++ ..+.+.|+.+.|.+.+-.|+.. ..|+++...+.-.- ..
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-cc
Confidence 11 01112333 3456789999999999999875 45677766554322 24
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-ccChhHHHHHHHHHH-hcCCHHHHH
Q 047480 428 GLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQMEHYGCMVDLLA-RDGRLDEAY 504 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~-~~g~~~eA~ 504 (719)
+++.+..+-+.-+.+. .| ...||..++-.|++..-++-|-.++.+-...-+ -.+...|+. ++++. -.-..++|.
T Consensus 290 ~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~ 366 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAF 366 (459)
T ss_pred CCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHH
Confidence 4555555555555553 44 346999999999999888888887754321111 122333443 33333 344566666
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhcCChhHH----HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 505 GLIQSMPYDANSVIWRALLAA-CRLHRNAKIG----EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 505 ~~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~a----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+-+..+...--...-..-+.. -.++.+-+.+ .+-+++.+++-- ......++.|.+..++.-+.++|+.-.+.
T Consensus 367 KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 367 KKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 655543100000000000111 1122222222 223333333221 24556778888889999999988876543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8e-05 Score=71.57 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=30.2
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++..+++.+|++...++++.+|++..++..-+.+|.-..++++|+.-++...+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 34455555566656666666665555555555555555555555555555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-05 Score=82.48 Aligned_cols=432 Identities=12% Similarity=0.060 Sum_probs=227.7
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 047480 80 MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFG 158 (719)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g 158 (719)
..+....|+++.|+.+|.+..... |+|...|+.-..+++..|+++.|.+--...++.. |+ .--|+.+..+..-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcc
Confidence 345667899999999999988776 5788889999999999999998887666665543 44 346777777777789
Q ss_pred ChhHHHHHHccCCCC---ChhhHHHHHHHHHcCCCcchHHHHHHHH-HHCCCCCChhhHHHHHHHHhccCCcHHHHHHHH
Q 047480 159 YINNAHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234 (719)
Q Consensus 159 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 234 (719)
++++|...|.+-.+. |...++-+..++... . .+.+.|..- .-.++.-++.|=..+-+. .-..+..
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~--------~~~~~l~ 153 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDP--------AYVKILE 153 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccH--------HHHHHHH
Confidence 999999999876553 455666666665111 0 011111100 000111111111100000 0001111
Q ss_pred HHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHH
Q 047480 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314 (719)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 314 (719)
.+.+. |.+ +..|........++..+...+. . .....|... .-.+..|...
T Consensus 154 ~~~~~----p~~-------l~~~l~d~r~m~a~~~l~~~~~--~---------~~~~~~~~~-----~~~~~~p~~~--- 203 (539)
T KOG0548|consen 154 IIQKN----PTS-------LKLYLNDPRLMKADGQLKGVDE--L---------LFYASGIEI-----LASMAEPCKQ--- 203 (539)
T ss_pred HhhcC----cHh-------hhcccccHHHHHHHHHHhcCcc--c---------ccccccccc-----CCCCCCcccc---
Confidence 11110 000 0111111111111111111100 0 000000000 0000000000
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
.....-..++..+-.+ ..--..-...+.++..+..+++.+.+-+. ...... .++..++.....|...
T Consensus 204 -~~~~~~~~~d~~ee~~---------~k~~a~~ek~lgnaaykkk~f~~a~q~y~-~a~el~--~~it~~~n~aA~~~e~ 270 (539)
T KOG0548|consen 204 -EHNGFPIIEDNTEERR---------VKEKAHKEKELGNAAYKKKDFETAIQHYA-KALELA--TDITYLNNIAAVYLER 270 (539)
T ss_pred -cCCCCCccchhHHHHH---------HHHhhhHHHHHHHHHHHhhhHHHHHHHHH-HHHhHh--hhhHHHHHHHHHHHhc
Confidence 0000000000000000 00001112333444444445555555554 222222 3344444455555555
Q ss_pred CChHHHHHHHhcCCCCCCCh-h-------cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 395 GSIDTALSVFYKIPKNLKTV-S-------LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
|.+......-+...+..... . +...+..+|...++++.|+..|.+.......||..+ +....+
T Consensus 271 ~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~E 341 (539)
T KOG0548|consen 271 GKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAE 341 (539)
T ss_pred cHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHH
Confidence 55544443333322210111 1 122244466777889999999998776544544322 223445
Q ss_pred HHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 467 EGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
++........- +.|.. .--..=...+.+.|++.+|++.+.++ ...| |...|..-..+|.+.|++..|+.-++..+
T Consensus 342 k~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 342 KALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555544443 23442 11222266788999999999999987 3445 67788888888999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+++|+....|..=+-++....+|+.|.+.+.+..+..
T Consensus 420 eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 420 ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999987654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00071 Score=69.33 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=36.9
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 139 (719)
|+.+|+.||+-+... ..+++.+.|+++...- |-....|..-+..-.+..+++....+|.+.+..-
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455666666655444 6666666666665433 2234455555555556666666666666655543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.3e-05 Score=79.22 Aligned_cols=236 Identities=14% Similarity=0.141 Sum_probs=144.7
Q ss_pred CChhHHHHHHH--HHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHC-C--------CCCCh
Q 047480 142 FDLFIRNALIH--FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS-C--------IQPDA 210 (719)
Q Consensus 142 ~~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~pd~ 210 (719)
-|..+..++++ .|..-|++|.|.+-.+-+. +-..|..|.+.+.+..+.+-|.-.+..|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666664 3666789998887766554 4567999999999988888877776666432 1 1232
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 047480 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290 (719)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~ 290 (719)
.+=.-+.-.....|.+++|+.++....+. ..|=..|...|.+++|.++.+.-...-=-.||.....-+-
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 22222222345778899999999888775 5566788899999999988876522222234444455555
Q ss_pred hcCCHHHHHHHHhhcCCC-----------------------ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhH
Q 047480 291 REGKIERARQLFDQMDQR-----------------------DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347 (719)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 347 (719)
..++.+.|.+.|+....+ |...|.=...-.-..|+.+.|+.+|.....
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 567788888887765421 111121122222344555566655554432
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 348 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
|-++++..+-.|+.++|.++-++ ..|......|..+|-..|++.+|...|.+.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444555556666666665542 234555556677777777777777766554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00025 Score=74.08 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=43.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAK 393 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~y~k 393 (719)
+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+.+.+......++. ..+..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3345556666666666666665542 2223344444555555555555555555222211111111 122334455555
Q ss_pred cCChHHHHHHHhcC
Q 047480 394 CGSIDTALSVFYKI 407 (719)
Q Consensus 394 ~g~~~~A~~~~~~~ 407 (719)
.|++++|..+|++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-05 Score=72.37 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=152.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-CCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHH-HHHHHHhcCC
Q 047480 251 TAVINMYAKCGLMNMAERVFSTM-GMSK-STAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTA-MISGYSQVGG 325 (719)
Q Consensus 251 ~~li~~y~~~g~~~~a~~~~~~~-~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~ 325 (719)
++.+..+.+..++++|.+++... .-.| +....+.|...|-...++..|...++++.. |...-|.. -...+-+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 44444555556666666655544 1122 444455555555566666666666655543 22221211 1233445555
Q ss_pred hhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 047480 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405 (719)
Q Consensus 326 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 405 (719)
+.+|+++...|... |+...-..-+.+. ..-..+++..+..+.+
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaA----------------------------------IkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAA----------------------------------IKYSEGDLPGSRSLVE 136 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHH----------------------------------HhcccccCcchHHHHH
Confidence 55566555555431 1111100001100 0112344445555555
Q ss_pred cCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc----
Q 047480 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK---- 481 (719)
Q Consensus 406 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~---- 481 (719)
+.+.. .+..+.+......-+.|++++|++-|+...+-+---....|+..+ +..+.|+.+.|.++..++++.|+.
T Consensus 137 Qlp~e-n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 137 QLPSE-NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred hccCC-CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 55421 233333333344445555555555555555432122233444433 233445555555555555544432
Q ss_pred ---------cC--------h-------hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChh
Q 047480 482 ---------PQ--------M-------EHYGCMVDLLARDGRLDEAYGLIQSMP----YDANSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 482 ---------p~--------~-------~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~ 533 (719)
|| . ..+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcc
Confidence 11 1 122333345678999999999999996 23577777665322 2345677
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.+.+-+.-+++++|-.+.++..+.-+|++..-++-|..++.+
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 777777888899998889999999999999999999888765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.3e-06 Score=82.33 Aligned_cols=224 Identities=12% Similarity=0.129 Sum_probs=135.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
-+.++|...|+++.++. +..... .|....+..+...+....+-+.+..-+.+.+.......+..+......+|...
T Consensus 40 ~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 34456666666554432 222222 44444444443333332333333332221221211112333333344567778
Q ss_pred CChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHH
Q 047480 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH----GGLVEEGKQ 470 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~ 470 (719)
|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+|..
T Consensus 116 ~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 116 GDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHH
Confidence 8888888877664 34555666778888999999999999999863 344 344444444332 346889999
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHHhccCC
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNA-KIGEIAGQKLLDLEP 547 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p 547 (719)
+|+++.+. +.+++.+.+.+.-+....|++++|.+++++. ...| |+.++..++..+...|+. +.+.+...++....|
T Consensus 189 ~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 189 IFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 99998742 4578888899999999999999999998875 3344 455777777777777877 677888899888899
Q ss_pred CCc
Q 047480 548 DHG 550 (719)
Q Consensus 548 ~~~ 550 (719)
+.+
T Consensus 268 ~h~ 270 (290)
T PF04733_consen 268 NHP 270 (290)
T ss_dssp TSH
T ss_pred CCh
Confidence 865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-05 Score=88.21 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=159.5
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHc--CC-----CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhhHH
Q 047480 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTM--GM-----SKSTAAWSSMISGYTREGKIERARQLFDQMDQR-D-LVSWT 314 (719)
Q Consensus 244 ~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~ 314 (719)
|.+...|-.-|......++.+.|.++.++. .+ +.-..+|.+++++-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 444555555666666666666666665555 12 122457888888777778778888888887762 3 34577
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
.|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.+.+....-...+.+..-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888888865 234556777788888888888888888885444443334566667777888899
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHGGLV 465 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 465 (719)
|+.+.++.+|+..... |+-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..=.+.|+-
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 9999999999987765 667889999999999999999999999999998888765 3555555443344443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-07 Score=58.16 Aligned_cols=33 Identities=30% Similarity=0.763 Sum_probs=28.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (719)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-05 Score=84.32 Aligned_cols=219 Identities=10% Similarity=0.060 Sum_probs=179.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHH
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 353 (719)
+++|-...-..+...+.+.|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.++ +||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 45566666778889999999999999999985 57888999999999999999999888873 889999998888
Q ss_pred HHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhH
Q 047480 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 432 (719)
+.-...-+++|.++......+ .-..+.....+.++++++.+.|+.-.+. +--..+|-....+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777788998888833322 1122222234478999999999875553 4567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 433 SIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 433 A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
|.+.|..-.. ..||.. .|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++
T Consensus 538 av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 538 AVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999998887 578874 89999999999999999999999999877 456677777888889999999999999887
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.7e-06 Score=79.08 Aligned_cols=182 Identities=9% Similarity=-0.031 Sum_probs=114.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCCh---hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTV---SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV---- 450 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 450 (719)
.....+..+...|.+.|++++|...|+++... +.+. ..|..+...|.+.|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34455666667777777777777777766543 2222 35566677777777777777777777763 33322
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHHHHcCCccChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 047480 451 TFVTVLCACSHG--------GLVEEGKQFFESMLNYGIKPQME-HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521 (719)
Q Consensus 451 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ 521 (719)
++..+..++.+. |+.++|.+.|+.+.+. .|+.. .+..+... +....... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHHH-----------HHHHH
Confidence 333334444433 5667777777777642 23321 22211111 00000000 01123
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDLEPDH---GAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+...+...|+.+.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455788899999999999999987765 468899999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-05 Score=75.01 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=111.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 500 (719)
+..|...|+++.+..-.+.+. .|. ..+...++.+++...++..++.. +.+...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 345778888777544332221 111 12223667778888888777543 45588899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 501 DEAYGLIQSM-PYDA-NSVIWRALLAA-CRLHRN--AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 501 ~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
++|...+++. ...| +...+..+..+ +...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 4555 56677777766 466676 59999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 047480 576 MDDSG 580 (719)
Q Consensus 576 m~~~~ 580 (719)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 98754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0062 Score=72.41 Aligned_cols=324 Identities=13% Similarity=0.010 Sum_probs=181.0
Q ss_pred HHhcCChHHHHHHHHHcC---CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CC---h---h--hHHHHHHHHH
Q 047480 257 YAKCGLMNMAERVFSTMG---MSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RD---L---V--SWTAMISGYS 321 (719)
Q Consensus 257 y~~~g~~~~a~~~~~~~~---~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~---~---~--~~~~li~~~~ 321 (719)
....|+.+.+...+..+. ...++.........+...|++++|...+....+ .+ . . ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344555666666655541 111222333444555667788887777765421 11 1 1 1112233455
Q ss_pred hcCChhHHHHHHHHhHhcCCCCCh----hHHHHHHHHHHccCChHHHHHHHHHHHHH---cCC-CCChhHHHHHHHHHHh
Q 047480 322 QVGGFSQALELFGKMESLGIHPDE----VTMVAVLRACVGLGALDFGKRLHQQYIEN---VVF-GRNIFLTTAVIDMYAK 393 (719)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~li~~y~k 393 (719)
..|++++|...+++....-...+. .....+...+...|+++.|...+.+.... .+. .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 778888888888877653111121 22334445556778888888877743321 111 0112334455667777
Q ss_pred cCChHHHHHHHhcCCCC-----CC----ChhcHHHHHHHHHhCCChhHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHh
Q 047480 394 CGSIDTALSVFYKIPKN-----LK----TVSLFNSIISGLAQHGLGETSIAVFREMELM--GLKPD--GVTFVTVLCACS 460 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~ 460 (719)
.|+++.|...+++.... .+ ....+..+...+...|++++|...+++.... ...|. ..++..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888777654321 01 1223444455566678888888888776542 11122 123444555666
Q ss_pred ccCcHHHHHHHHHHHHHcCC-ccChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHh
Q 047480 461 HGGLVEEGKQFFESMLNYGI-KPQMEHY-----GCMVDLLARDGRLDEAYGLIQSMPYD--ANS----VIWRALLAACRL 528 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~-~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~~~~~--p~~----~~~~~ll~~~~~ 528 (719)
..|+.++|.+.++.+....- ......+ ......+...|+.+.|.+.+...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 77888888888877753110 1111111 11224445578888888887665311 111 113344455677
Q ss_pred cCChhHHHHHHHHHhccCCCCchh------HHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAH------YVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.|+.++|...++++++........ +..++.+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 788888888888888764433222 2355677788888888888888888754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-07 Score=57.81 Aligned_cols=32 Identities=34% Similarity=0.728 Sum_probs=21.0
Q ss_pred CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 479 g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-06 Score=73.81 Aligned_cols=122 Identities=8% Similarity=-0.032 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047480 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD 513 (719)
Q Consensus 435 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 513 (719)
.+|++..+ +.|+. +.....++...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++. ...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555554 34553 3345566677788888888888777533 234667777777888888888888888776 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 514 A-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 514 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 55677777777777888888888888888888888777766666553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00022 Score=68.59 Aligned_cols=335 Identities=16% Similarity=0.091 Sum_probs=181.0
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHH---HHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 047480 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS---ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254 (719)
Q Consensus 178 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li 254 (719)
.-.+...+...|++..|+.-|....+ .|+..|.++.+ .|...|.-..|.+=+..+++
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---------------- 100 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---------------- 100 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----------------
Confidence 34566677777788888777777654 33344444432 23344444444444444443
Q ss_pred HHHHhcCChHHHHHHHHHcCCCCchHH-HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 047480 255 NMYAKCGLMNMAERVFSTMGMSKSTAA-WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333 (719)
Q Consensus 255 ~~y~~~g~~~~a~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (719)
+.||-.. .-.-...+.+.|.++.|..-|+.+.+.+.. -+....++.+.-..++
T Consensus 101 --------------------lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e----- 154 (504)
T KOG0624|consen 101 --------------------LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQE----- 154 (504)
T ss_pred --------------------cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHH-----
Confidence 3455322 222334566777777777777776542221 0000011110000000
Q ss_pred HHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CC
Q 047480 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LK 412 (719)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~ 412 (719)
+ ......+..+...|+...+..... .+.+.. +.+...+..-.++|...|++..|..-+....+. ..
T Consensus 155 --~---------~~l~~ql~s~~~~GD~~~ai~~i~-~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 155 --H---------WVLVQQLKSASGSGDCQNAIEMIT-HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred --H---------HHHHHHHHHHhcCCchhhHHHHHH-HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence 0 111222223334445555555444 222222 244455555555666666666665554443332 24
Q ss_pred ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-H---HHHH-------H--HHHhccCcHHHHHHHHHHHHHcC
Q 047480 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-T---FVTV-------L--CACSHGGLVEEGKQFFESMLNYG 479 (719)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t---~~~l-------l--~a~~~~g~~~~a~~~~~~m~~~g 479 (719)
++...--+-..+-..|+.+.++...++-++ +.||.. . |..| - ......+.+.++.+-.+...+..
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 444555555555566666666666665554 355542 1 1111 1 11334566777777777776543
Q ss_pred CccC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 480 IKPQ---MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 480 ~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
.+.. ...+..+-.+|...|++.+|++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|++..+-.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 2211 233445567778889999999988876 56665 667777778888888999999999999999998854432
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCC
Q 047480 555 LLSNMLAETYRWEEARQVRKLMDDSGIQK 583 (719)
Q Consensus 555 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 583 (719)
. .+.|.++.++..++..-|
T Consensus 380 G----------le~Akrlkkqs~kRDYYK 398 (504)
T KOG0624|consen 380 G----------LERAKRLKKQSGKRDYYK 398 (504)
T ss_pred H----------HHHHHHHHHHhccchHHH
Confidence 2 356666666655554433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=82.99 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=133.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCC-----C---C
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-----P---D 344 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p---~ 344 (719)
+.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+..++.-+....+ + +
T Consensus 316 P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~ 395 (579)
T KOG1125|consen 316 PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGEN 395 (579)
T ss_pred hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcc
Confidence 44566777777777777777777777776654 34555666667777777777888887776543210 0 0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHH
Q 047480 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISG 423 (719)
Q Consensus 345 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~ 423 (719)
..+-.. ........+....++|-+.....+...|+.+...|.-.|--.|++++|.+.|+..... |.|...||.|...
T Consensus 396 ~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 396 EDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGAT 473 (579)
T ss_pred ccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHH
Confidence 000000 1112222344455555546666776677778888888888888899999988887665 6677889999888
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-.++
T Consensus 474 LAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888888899999888887 578765 33345557888888888888877665
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.3e-05 Score=75.73 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=106.3
Q ss_pred ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCCh--hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 047480 396 SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLG--ETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
++++++..++++... +++..+|+-....+.+.|+. ++++++++++.+. .| |..+|.....++.+.|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 356666666555443 45555666555445555542 5667777777764 33 345666666667777777777777
Q ss_pred HHHHHHcCCccChhHHHHHHHHHHhc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChhHHHHH
Q 047480 472 FESMLNYGIKPQMEHYGCMVDLLARD---GR----LDEAYGLIQS-MPYDA-NSVIWRALLAACRLH----RNAKIGEIA 538 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~eA~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 538 (719)
++++++.+ .-+...|+....++.+. |. .++++++..+ +...| |...|+.+.+.+... ++..+|...
T Consensus 165 ~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 165 CHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 77777543 22345555555444443 22 2456666644 34455 667898888888773 345678888
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhc
Q 047480 539 GQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
+.++.+.+|+++.+...|+++|+..
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 9999999999999999999999864
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-05 Score=84.74 Aligned_cols=212 Identities=12% Similarity=0.022 Sum_probs=129.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCC
Q 047480 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 350 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (719)
.+...+.+.|-...|..+++ . ...+.-+|..|...|+..+|..+..+-.+.+||...|..+.+......-
T Consensus 403 ~laell~slGitksAl~I~E-r---------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFE-R---------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHcchHHHHHHHHH-h---------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34444555566666666665 1 2334456666666666666666665554444566666666666555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
+++|.++++.-... .-..+..-....++++++.+.|+.-.+.+ +....+|-.+.-+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 66666666543321 00011111122466666666666555322 22355666666666777777777777766
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 510 M-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 510 ~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
. ...|| ...||++-.+|.+.++..+|...+.++++-+-++...+....-...+.|.|++|.+.+..+.+.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5 45664 4578888888888888888888888888777666666666666667788888888887777654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-05 Score=87.05 Aligned_cols=140 Identities=13% Similarity=0.056 Sum_probs=118.8
Q ss_pred CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHH
Q 047480 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYG 488 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~ 488 (719)
+.++..+-.|.....+.|++++|..+++...+ +.||.. ....+...+.+.+.+++|....++.... .|+ .....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 35688888999999999999999999999998 588875 7778888999999999999999999864 455 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 489 CMVDLLARDGRLDEAYGLIQSMP-YDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
.+..++.+.|++++|.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88899999999999999999983 3444 678999999999999999999999999987765444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-06 Score=73.13 Aligned_cols=107 Identities=11% Similarity=-0.041 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 470 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
.+++..++ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++|
T Consensus 14 ~~~~~al~--~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34555543 3344 4556788999999999999999987 4455 677899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+++.++..++.++...|++++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988754
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.5e-06 Score=70.43 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
....-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..+.++..++|++|.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455556677788999999999999987 3455 56788889888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 047480 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 624 (719)
..|+.+.|++-|+...... ..+|+..++.+..+.+...+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999987531 135676777666666555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.2e-05 Score=86.05 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=165.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-H
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN------LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-V 450 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 450 (719)
+.+...|-..+......+++++|++++++.... ..-...|.++++.-...|.-+...++|++..+. -|. .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 345667777788888899999999999886543 122347999999888889888899999999884 244 4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA---NSVIWRALLAA 525 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~ 525 (719)
.|..|+..|.+.+..++|-++++.|. +.| -....|..+++.+.+..+-++|..++.++ ..-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 78888999999999999999999999 555 56889999999999999999999999876 2222 33344455555
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 582 (719)
-.++|+.+++..+|+-.+.-.|.-...|..++++-.+.|..+.++.+|+.....++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 678999999999999999999998899999999999999999999999999987663
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.1e-05 Score=74.68 Aligned_cols=184 Identities=9% Similarity=0.013 Sum_probs=126.1
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChh---cHH
Q 047480 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN-IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVS---LFN 418 (719)
Q Consensus 344 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~---~~~ 418 (719)
....+......+...|+++.|...+++.+....-.+. ...+..+...|.+.|++++|...|+++.+. +.+.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777788889999999999999954444332222 246677889999999999999999998664 22332 466
Q ss_pred HHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHH
Q 047480 419 SIISGLAQH--------GLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489 (719)
Q Consensus 419 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 489 (719)
.+..++.+. |+.++|.+.|+++... .|+.. ....+.... . .. ... ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHH--------HHHHHH
Confidence 666666654 7889999999999875 56553 222211110 0 00 000 011225
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 490 MVDLLARDGRLDEAYGLIQSM----PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|+.++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788999999999888876 2233 346788888889999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.9e-05 Score=69.21 Aligned_cols=149 Identities=17% Similarity=0.138 Sum_probs=63.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
-..|.-.|+-+.+..+....... +.|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 33344444444444444443222 233334444444444555555555555544432 1333344444444455555555
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHH
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD--ANSVIWRALLAACRLHRNAKIGEIA 538 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~ 538 (719)
+|..-|.+..+.- .-+...++.|.-.|.-.|+++.|..++.+.... .|..+-..|.-.....|++++|+.+
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555444444321 111333444444444444444444444443211 1333333343344444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-05 Score=69.47 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047480 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALL 523 (719)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll 523 (719)
.|+......+-.++...|+-+....+....... ...|......++....+.|++.+|...+++. +.+||...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 454433344555666677777777666665421 1334555556778888888888888888887 3445777888888
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.+|-+.|+.+.|...+.+++++.|+++..+..|+-.|.-.|+++.|..++......+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888888888888888888888776543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00016 Score=67.63 Aligned_cols=154 Identities=10% Similarity=0.102 Sum_probs=108.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
+-.|.+.|+++......+.+.. +. ..+...++.++++..+++..+.. +.|...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3457777777665544433222 11 01223566677777777777642 3455688888888889999999
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDL-LARDGR--LDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKL 542 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (719)
|...|+...+.. +.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888643 2347777778876 467777 48999999887 4555 5567777777889999999999999999
Q ss_pred hccCCCCchhH
Q 047480 543 LDLEPDHGAHY 553 (719)
Q Consensus 543 ~~~~p~~~~~~ 553 (719)
+++.|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99988765444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00042 Score=77.83 Aligned_cols=234 Identities=8% Similarity=0.055 Sum_probs=133.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh-hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ--RDLV-SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 354 (719)
+...+..|+..|...+++++|.++.+...+ |+.. .|-.+...+.+.++..++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 455677777777777777777777765443 3322 333333355566665555444 2221 1
Q ss_pred HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHH
Q 047480 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETS 433 (719)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 433 (719)
.....++.....++. .+...+ .+......|..+|-+.|+.++|..+++++.+. +.|+...|.+.-.|+.. +.++|
T Consensus 93 ~~~~~~~~~ve~~~~-~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICD-KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHH-HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 122222211222222 333322 33345566777777888888888888777665 56777777777777777 77788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 047480 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPY 512 (719)
Q Consensus 434 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 512 (719)
++++.+.... +....++..+.++|.++.... |+ ...+-.+....... ...
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~------------~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGH------------REF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhh------------hcc
Confidence 7777776653 445556777777777776532 22 22222221111111 111
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 513 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
.--..+|--+-.-|...++++++..+++.+++.+|+|..+..-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1223344444555667777888888888888888877777666666664
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00032 Score=77.97 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=118.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHH
Q 047480 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVT 454 (719)
Q Consensus 377 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 454 (719)
+..++..+-.|.+.....|.+++|..+++...+. |.+...+..++..+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 4456778888999999999999999999998887 566778899999999999999999999999984 67765 5566
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALL 523 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll 523 (719)
+..++.+.|.+++|..+|+++...+ .-+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6677889999999999999999732 233788899999999999999999999987 2334445555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00019 Score=72.35 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=138.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG-LGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGG 463 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 463 (719)
+-..+.+.+..++|..+..++... +.+..+|+.....+...| ++++++..++++.+. .|+. .+|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 334455677888888888887664 456677887777777777 679999999999985 4443 35554444455556
Q ss_pred c--HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh----
Q 047480 464 L--VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH---RNA---- 532 (719)
Q Consensus 464 ~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~---- 532 (719)
. .+++..+++.+++.. +-+...|+....++.+.|++++|++.++++ ...| |..+|+.......+. |..
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 5 367888888888533 234778888888999999999999999998 3333 677888776665544 222
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHHhhc----CChHHHHHHHHHHHh
Q 047480 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAET----YRWEEARQVRKLMDD 578 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~ 578 (719)
+.......++++.+|++..+|..+..++... ++..+|.+...+..+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677788899999999999999999999773 445667777666544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.016 Score=59.81 Aligned_cols=177 Identities=12% Similarity=0.088 Sum_probs=127.2
Q ss_pred HHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 398 DTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 398 ~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
+.....++++... ..-..+|-..+..-.+..-...|..+|.+..+.+..+.. ...++++.- -..++.+-|.++|+.
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy-~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY-YCSKDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH-HhcCChhHHHHHHHH
Confidence 3344444444332 123346888888888888899999999999999888844 466666654 456889999999998
Q ss_pred HH-HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 475 ML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP---YDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 475 m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
=. ++| -+..-..+.++-+..-++-..|..+|++.- ..|| ..+|..+|.--..-|+...+.++-++.....|.
T Consensus 427 GLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 427 GLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 76 543 445566788899999999999999999872 3343 468999999999999999999998888776662
Q ss_pred C----chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 549 H----GAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 549 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
+ ...-..+.+.|.=.+.+..-..-++.|-
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l~ 537 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDELKFLG 537 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHHHhhh
Confidence 2 1234456677777777666555555553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-06 Score=53.86 Aligned_cols=35 Identities=43% Similarity=0.669 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCh
Q 047480 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210 (719)
Q Consensus 176 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 210 (719)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.8e-06 Score=52.85 Aligned_cols=35 Identities=34% Similarity=0.642 Sum_probs=31.0
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 449 (719)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.4e-05 Score=66.44 Aligned_cols=97 Identities=27% Similarity=0.301 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455666777788888888888888776 3334 55677777777888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 047480 562 ETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~~ 580 (719)
..|++++|...++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8899999988888877643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0002 Score=73.49 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=103.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
-..+|+..+...+.++.|.++|+++.+.. |+ ....|+..+...++-.+|.+++++. ...| +...+......|..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34566777788899999999999998543 54 4455888888889999999999887 3334 55566655666889
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.++.+.|+.+++++.++.|++..+|..|+.+|...|++++|...++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999885
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.039 Score=60.55 Aligned_cols=486 Identities=13% Similarity=0.091 Sum_probs=245.2
Q ss_pred ChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHH
Q 047480 20 SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLY 96 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 96 (719)
....|.+..+.+++..+ ...+...+.++..... |+.++|..+++.... .|..+...+-..|.+.++.++|..+|
T Consensus 24 qfkkal~~~~kllkk~P--n~~~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHP--NALYAKVLKALSLFRL-GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHh-cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45566666666666643 3445555555544337 899999988887643 46678888999999999999999999
Q ss_pred HHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hhHHHHH
Q 047480 97 TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY----------INNAHKV 166 (719)
Q Consensus 97 ~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~----------~~~A~~~ 166 (719)
++..+.. |+..-...+..++.+.+++.+-.++--++.+ .++.+.+.+=++++.+...-. +.-|.+.
T Consensus 101 e~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 101 ERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9998877 8888888888999988887665555444444 234555655556666554321 1234445
Q ss_pred HccCCCCC-----hhhHHHHHHHHHcCCCcchHHHHHHH-HHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhh
Q 047480 167 FEGSLARD-----LVSYNTLINGYAQVKEPCPALWLFRK-MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240 (719)
Q Consensus 167 f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 240 (719)
++.+.+.+ ..-...-...+...|++++|++++.. ..+.-...+...-+--+..+...+.+.+..++-..+...
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k- 255 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK- 255 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh-
Confidence 55444332 11111112233445667777777632 222212222222223333344444444444444444443
Q ss_pred CCCCC--------------------------------------------chHHHHHHH---HHHHhcCChHHHH-HHHHH
Q 047480 241 GCVGS--------------------------------------------NMLLKTAVI---NMYAKCGLMNMAE-RVFST 272 (719)
Q Consensus 241 ~~~~~--------------------------------------------~~~~~~~li---~~y~~~g~~~~a~-~~~~~ 272 (719)
+... ....+-+-+ ..+-.-|+.+++. .++++
T Consensus 256 -~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 256 -GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred -CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 1110 000011111 1111223333322 22233
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhh--------HHHHHHHHHhcCC-----hhHHHHHHHHhH-
Q 047480 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-RDLVS--------WTAMISGYSQVGG-----FSQALELFGKME- 337 (719)
Q Consensus 273 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~--------~~~li~~~~~~g~-----~~~A~~~~~~m~- 337 (719)
.|..|- |..=+..|..+=..+.-..+.+.... .+..+ +...+..-...|. .+....++++..
T Consensus 335 fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 335 FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 332221 11111111111122222333333221 11111 1111211122221 233344443332
Q ss_pred --h------cCCCCChhH---------HHHHHHHHHccCChH---HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 047480 338 --S------LGIHPDEVT---------MVAVLRACVGLGALD---FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397 (719)
Q Consensus 338 --~------~g~~p~~~t---------~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 397 (719)
+ .++-|+..+ .+.++..|-+.++.. +|.-+++..+... +.|..+--.||..|.-.|-+
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~ 489 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAF 489 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCC
Confidence 1 233445443 335566777777765 3444444222222 35556667889999999999
Q ss_pred HHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHH---H
Q 047480 398 DTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQ---F 471 (719)
Q Consensus 398 ~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~---~ 471 (719)
..|.++|..+.-. ..|...|- +..-+...|++..+...+.....- ..-+. .|-..+..||. .|.+.+..+ +
T Consensus 490 p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~f 566 (932)
T KOG2053|consen 490 PDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAF 566 (932)
T ss_pred hhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHH
Confidence 9999999988653 23333332 234455567777777777665542 11111 12233333443 344444333 2
Q ss_pred HHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHH
Q 047480 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA--NSVIWRAL 522 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p--~~~~~~~l 522 (719)
=+++....-.....+-+..++.+...++.++-...+..|..+| |.+-|.+|
T Consensus 567 r~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 567 RDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhcccccc
Confidence 2333311111223445667788889999999999998886444 34455444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0022 Score=65.43 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV-LCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLL 494 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 494 (719)
+--..-.+...|++++|+..++.++.. .||.+.|..+ ...+...++.++|.+.++.++. ..|+ ....-.+.++|
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHH
Confidence 333344455678888888888888774 6766655544 4567788889999999988886 3466 55566677888
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 047480 495 ARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (719)
.+.|++.+|+..+++.. .+.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|...
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIF 447 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHH
Confidence 99999999998888762 334778899999999998887766543 45567788999999998
Q ss_pred HHHHHhCC
Q 047480 573 RKLMDDSG 580 (719)
Q Consensus 573 ~~~m~~~~ 580 (719)
....+++.
T Consensus 448 l~~A~~~~ 455 (484)
T COG4783 448 LMRASQQV 455 (484)
T ss_pred HHHHHHhc
Confidence 88887764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00079 Score=68.49 Aligned_cols=179 Identities=13% Similarity=0.046 Sum_probs=128.0
Q ss_pred ChHHHHHHHhcCCCC----CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 047480 396 SIDTALSVFYKIPKN----LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
++.+++..-+.++.. .++.......+.+.........+-.++.+-.+. .-...-|..-+ .....|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 344555555555543 345555556665543333222332222222221 11223344444 35567999999999
Q ss_pred HHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
++.++.. .+-|........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+..+.+...-+|++
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 9998853 2334666777789999999999999999998 56676 6778888889999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 550 GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+..|..|+.+|..+|+..+|...+.++..
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999988887754
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=50.93 Aligned_cols=34 Identities=32% Similarity=0.641 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC
Q 047480 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208 (719)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 208 (719)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0055 Score=57.50 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 499 RLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 499 ~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
.+.+|.-+|++|. ..|+..+.+-...+|...|++++|+.+++.++..+|++|.+...++-.--..|+-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 3445555555552 334444555555555555555555555555555555555555555555455555433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.7e-05 Score=50.24 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=25.8
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 447 (719)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888777776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00039 Score=71.45 Aligned_cols=127 Identities=12% Similarity=0.120 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACS 460 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 460 (719)
....+|+..+...++++.|..+|+++.+ .++..+..++..+...++..+|++++++..+. .| +...+..-...|.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~--~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRE--RDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHh--cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445677777788999999999999988 55555666888888889999999999999864 44 4445555556688
Q ss_pred ccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 514 (719)
+.++.+.|.++.+++.+ ..|+ -.+|..|+.+|.+.|++++|+..++.+|+.|
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999999997 3466 6699999999999999999999999998554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00041 Score=60.80 Aligned_cols=113 Identities=8% Similarity=0.036 Sum_probs=83.7
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047480 436 VFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD 513 (719)
Q Consensus 436 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 513 (719)
+|++..+ ..|+. .....+...+...|++++|.+.|+.+...+ +.+...+..+...|.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444 35544 345566667778888888888888887643 335777788888888889999988888876 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 514 A-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 514 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
| +...|..+...+...|+.+.|...+++++++.|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 4567777777788889999999999999999998754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0081 Score=56.41 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=97.7
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cC
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH----GG 463 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g 463 (719)
...|...|+.++|.+....... -+....| ...+.+..+.+-|.+.+++|.+- -+..|.+.|.+++.+ .+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~--lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGEN--LEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhccch--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 3456777777777777776332 2222222 23344556677788888888762 355566666665543 34
Q ss_pred cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 047480 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNA-KIGEIAGQ 540 (719)
Q Consensus 464 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~ 540 (719)
.+.+|.-+|++|.+. ..|+..+.+.+..+....|++++|..++++. ....++.+...++..-...|.. +--.+...
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 577788888888732 4577777777777777888888888888776 2223555555555555555543 44555677
Q ss_pred HHhccCCCCc
Q 047480 541 KLLDLEPDHG 550 (719)
Q Consensus 541 ~~~~~~p~~~ 550 (719)
++....|..+
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 7777777654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0035 Score=58.31 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=109.0
Q ss_pred HHHhcCChHHHHHHHhcCCCCC-CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKNL-KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
+..-+|+.+.|...++++.... .+...--.-..-+-..|++++|+++++...+.. +.|.+++..=+...-..|..-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 3445677777777776665531 111111111122445788888999988888764 44556776666666666776777
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhc--CChhHHHHHHHHHh
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAA-CRLH--RNAKIGEIAGQKLL 543 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~--g~~~~a~~~~~~~~ 543 (719)
++-+....+. +..|.+.|.-+.++|...|++++|.--++++ -..| ++..+..+... |... .|.+.+.+++++++
T Consensus 140 Ik~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 140 IKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777666642 5678899999999999999999999888887 3455 44455555555 3333 37889999999999
Q ss_pred ccCCCCchhHH
Q 047480 544 DLEPDHGAHYV 554 (719)
Q Consensus 544 ~~~p~~~~~~~ 554 (719)
++.|.+...+.
T Consensus 219 kl~~~~~ral~ 229 (289)
T KOG3060|consen 219 KLNPKNLRALF 229 (289)
T ss_pred HhChHhHHHHH
Confidence 99996544433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0045 Score=69.79 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhH-HHHHHHH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT-MVAVLRA 354 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a 354 (719)
+.|+.+.|.+...|+.. ++++|..++.+. +..|...+++.++.+++.++... .|+.+. |..+++.
T Consensus 147 ~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~k 212 (906)
T PRK14720 147 RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERK 212 (906)
T ss_pred cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHH
Confidence 44566777777777777 777777776653 23366677888888888888765 333332 2222222
Q ss_pred HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHH
Q 047480 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLA 425 (719)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~ 425 (719)
. ....+...-+.++-.|-+.|-+.++++++..+|..+.+. +.|.....-++..|.
T Consensus 213 i----------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 V----------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred H----------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1 111223333444555667777888888888888887765 556666677777665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0003 Score=56.76 Aligned_cols=93 Identities=22% Similarity=0.165 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (719)
+..+...+.+.|++++|.+.+++. ...| +...|..+...+...++.+.|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788889999999888876 3334 34667777777888899999999999999999988888899999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 047480 565 RWEEARQVRKLMDDS 579 (719)
Q Consensus 565 ~~~~A~~~~~~m~~~ 579 (719)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0014 Score=58.12 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh--hHHHHHHHHHHhcCCH
Q 047480 427 HGLGETSIAVFREMELMGLKPDG----VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM--EHYGCMVDLLARDGRL 500 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~ 500 (719)
.++...+...++.+.+. .|+. .....+...+...|++++|...|+........|+. ...-.|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555555555555543 2222 12222334455555666666666555543312211 1222344555555555
Q ss_pred HHHHHHHHhC
Q 047480 501 DEAYGLIQSM 510 (719)
Q Consensus 501 ~eA~~~~~~~ 510 (719)
++|+..++..
T Consensus 102 d~Al~~L~~~ 111 (145)
T PF09976_consen 102 DEALATLQQI 111 (145)
T ss_pred HHHHHHHHhc
Confidence 5555555543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.8e-05 Score=47.39 Aligned_cols=31 Identities=39% Similarity=0.649 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHcCCCcchHHHHHHHHHHCCC
Q 047480 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206 (719)
Q Consensus 176 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 206 (719)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0031 Score=58.60 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=121.5
Q ss_pred cCChHHHHHHHhcCCCC------CCChh-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCcH
Q 047480 394 CGSIDTALSVFYKIPKN------LKTVS-LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL-CACSHGGLV 465 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 465 (719)
..+.++..+++..+... .++.. .|..++-+....|+.+.|...++++... + |++.-...+= .-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 34566777777665432 12222 2444455566677888888888887765 2 5543221111 114456788
Q ss_pred HHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 466 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
++|.++++.++... +.|..+|---+.+.-..|+--+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 88888888887443 344566666666666677766777666554 345578888888888888888888888888888
Q ss_pred ccCCCCchhHHHHHHHHhhcC---ChHHHHHHHHHHHhCCC
Q 047480 544 DLEPDHGAHYVLLSNMLAETY---RWEEARQVRKLMDDSGI 581 (719)
Q Consensus 544 ~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 581 (719)
-..|.++..+..++..+.-.| +.+-|++++....+...
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 888888888888888777666 34457777777666443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.8e-05 Score=46.54 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=24.3
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGL 445 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 445 (719)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.1e-05 Score=59.66 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 047480 497 DGRLDEAYGLIQSM-PYDA---NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572 (719)
Q Consensus 497 ~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (719)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555565555554 1112 334444455556666666666666666 555565555666667777777777777777
Q ss_pred HHH
Q 047480 573 RKL 575 (719)
Q Consensus 573 ~~~ 575 (719)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.13 Score=54.95 Aligned_cols=292 Identities=14% Similarity=0.177 Sum_probs=140.1
Q ss_pred cCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCcHHHHHH
Q 047480 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD----AFTFVAMFSACTELNDPRIGKQF 232 (719)
Q Consensus 157 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~i 232 (719)
.|++++|++++-.+..+|.. |..+.+.|++-...++++. -|-..| ...++.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888877777776642 4555566666655555432 111111 12344444444444444444444
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 047480 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312 (719)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 312 (719)
+..--.. ...+..|.+..++++.+.+.+ .++.+....-.+.+++...|.-++|.+.|-+-..|..
T Consensus 819 Y~~~~~~-----------e~~~ecly~le~f~~LE~la~--~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-- 883 (1189)
T KOG2041|consen 819 YSYCGDT-----------ENQIECLYRLELFGELEVLAR--TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-- 883 (1189)
T ss_pred HHhccch-----------HhHHHHHHHHHhhhhHHHHHH--hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH--
Confidence 4333221 223444444444444444443 3455566666777777777777777776665544422
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
-+..|...+++.+|.++-++.. -|...|+ +. ..+.+++ .+.. ..--|.++-
T Consensus 884 ---Av~tCv~LnQW~~avelaq~~~----l~qv~tl---ia--------k~aaqll----~~~~-------~~eaIe~~R 934 (1189)
T KOG2041|consen 884 ---AVHTCVELNQWGEAVELAQRFQ----LPQVQTL---IA--------KQAAQLL----ADAN-------HMEAIEKDR 934 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcc----chhHHHH---HH--------HHHHHHH----hhcc-------hHHHHHHhh
Confidence 2344566666777766655432 2222222 11 1111111 1111 012456777
Q ss_pred hcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHH----hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 393 KCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLA----QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
+.|+.-+|-+++.+|.+. ...-+.|-.+-..|. -..+..+++.-.++....|...+... +...|...+
T Consensus 935 ka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~ 1007 (1189)
T KOG2041|consen 935 KAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAE 1007 (1189)
T ss_pred hcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhh
Confidence 888877777777777653 111112222211111 11223334444444444443322221 112233333
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
+-++.+..-. -....|+-.|..--...|..+.|++.--.+
T Consensus 1008 ~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L 1047 (1189)
T KOG2041|consen 1008 QSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALIL 1047 (1189)
T ss_pred HHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhh
Confidence 3333332221 123556666666677788888887764333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=55.35 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-ChHHHHHHHHHHHh
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY-RWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 578 (719)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788888889999999999999999999999999999999999999999 79999999988765
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00065 Score=70.16 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=41.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 494 LARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
+...|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444555555444443 2222 233444444444555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 047480 572 VRKLMDD 578 (719)
Q Consensus 572 ~~~~m~~ 578 (719)
.++...+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00034 Score=66.70 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=62.3
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-VIWRALLAACRLHRNAKI 534 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 534 (719)
-..+.+++.+|...|.+++. +.|+ ...|..=..+|.+.|.++.|++=.+.. .+.|.. -+|..|.-+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35567777777777777776 3444 445555567777777777777666654 455543 467777777777777777
Q ss_pred HHHHHHHHhccCCCCchh
Q 047480 535 GEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~ 552 (719)
|++.|+++++++|++...
T Consensus 168 A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHhhhccCCCcHHH
Confidence 777777777777776533
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00075 Score=57.50 Aligned_cols=93 Identities=15% Similarity=0.002 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH---GAHYVLLSN 558 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 558 (719)
+..++..+.+.|++++|.+.++.+ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334455555555666665555554 11222 1233444455555666666666666666655553 334556666
Q ss_pred HHhhcCChHHHHHHHHHHHhC
Q 047480 559 MLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 559 ~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0025 Score=56.58 Aligned_cols=123 Identities=13% Similarity=0.027 Sum_probs=90.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ---MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDANS----VIWRAL 522 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~----~~~~~l 522 (719)
.|..++.+. ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+... ..||. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344445455 4788899999999998432 122 2334446688899999999999999873 22443 345556
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
...+...|++++|+..++.. .-.+..+..+..++++|.+.|++++|+..++..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67788999999999998763 334445678889999999999999999998864
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.21 Score=55.10 Aligned_cols=495 Identities=12% Similarity=0.045 Sum_probs=258.4
Q ss_pred CChHHHHHHhccCCC--CCccHHHHHHHHH--HcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 047480 56 NGLFRSRILFSQIDN--PNIFIWNTLMRGY--SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131 (719)
Q Consensus 56 g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 131 (719)
+++..|....++... ||.. |...+.++ .+.|+.++|..+++.....+. .|..|+..+-..|...+..+++..+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHH
Confidence 566666666666533 5543 44555554 578999999988888776653 5788999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChh----HHHHHHccCCCCChhhHHHHHHHHHcC-CCcc---------hHHHH
Q 047480 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYIN----NAHKVFEGSLARDLVSYNTLINGYAQV-KEPC---------PALWL 197 (719)
Q Consensus 132 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~---------~A~~~ 197 (719)
++++.... |+......+..+|.+.+++. .|.+++...+++--..|+. ++.+.+. ...+ -|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHH
Confidence 99998764 66778888888888888764 4778888777665555654 4444432 2222 24445
Q ss_pred HHHHHHCC-CCCChhhHHHHHHHHhccCCcHHHHHHHH-HHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-C
Q 047480 198 FRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-G 274 (719)
Q Consensus 198 ~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~-~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~ 274 (719)
++.+.+.+ -.-+..-...-+......|..++|..++. ..... -.+.+...-+--++.+.+.+++.+..++..+. .
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 55555443 11122222222334456788899988883 33333 24455666678889999999998877776666 1
Q ss_pred CCCchHHHHHHHHHHHh----------------cCCHHHHHHHHhhcCC-CChhhHHHHHHHHH---hcCChhHHHHHHH
Q 047480 275 MSKSTAAWSSMISGYTR----------------EGKIERARQLFDQMDQ-RDLVSWTAMISGYS---QVGGFSQALELFG 334 (719)
Q Consensus 275 ~~~~~~~~~~li~~y~~----------------~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~---~~g~~~~A~~~~~ 334 (719)
-.+|. |...++.+.+ .+.++...+...+... +.--.|-+-+..+. .-|+.++++-.|-
T Consensus 255 k~~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 255 KGNDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred hCCcc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 12222 3333332221 2222222222222111 11122333333333 3466666554443
Q ss_pred HhHhcCCCC----ChhH---------HHHHHHHHHccC-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh---
Q 047480 335 KMESLGIHP----DEVT---------MVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI--- 397 (719)
Q Consensus 335 ~m~~~g~~p----~~~t---------~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~--- 397 (719)
+-. |-+| |... ...++..+.... +.........+ ....+..-.-+|.+
T Consensus 333 ~kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~-------------h~c~l~~~rl~G~~~~l 397 (932)
T KOG2053|consen 333 KKF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ-------------HLCVLLLLRLLGLYEKL 397 (932)
T ss_pred HHh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH-------------HHHHHHHHHHhhccccC
Confidence 221 1111 1111 122222222111 11111111110 01111111111210
Q ss_pred --HHHHHHH----hcCCC------C-CCCh---------hcHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCHHHH
Q 047480 398 --DTALSVF----YKIPK------N-LKTV---------SLFNSIISGLAQHGLGE---TSIAVFREMELMGLKPDGVTF 452 (719)
Q Consensus 398 --~~A~~~~----~~~~~------~-~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~ 452 (719)
+.-..++ -.... . -|+. -+-|.|+..+-+.++.. +|+-+++.-... -+-|..+=
T Consensus 398 ~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~K 476 (932)
T KOG2053|consen 398 PADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTK 476 (932)
T ss_pred ChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHH
Confidence 0111111 11100 0 0111 13466777777777655 344444444432 12344466
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHR 530 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g 530 (719)
..+|..|+-.|-...|.+.|..+--..|..|..-|- +...+...|++..+...++..- ...+..--.-+|.-..++|
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g 555 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRG 555 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcC
Confidence 677888888888888888888887555666644332 3355556677776666665531 0101111111222233556
Q ss_pred ChhHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 531 NAKIGEIAGQKLLDLEPD----HGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.+....++..---.+.-. -..+-..........++.++-...+..|+
T Consensus 556 ~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 556 AYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 665554432211112111 11223356667778888888888888877
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00028 Score=52.59 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=49.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++.+.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3457788999999999999999999999999999999999999999999999887643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.16 Score=51.74 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 504 YGLIQSMPYDA----NSVIWRALLAA--CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 504 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
..++++.++.| +...-|.|.+| ...+|++.++.-...-+.++.| ++.+|..++-.+....+++||..++..+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44555555444 34466777777 5788999999999999999999 78999999999999999999999998754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0027 Score=63.16 Aligned_cols=161 Identities=11% Similarity=0.027 Sum_probs=112.2
Q ss_pred hcHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHcCCccChhHH----
Q 047480 415 SLFNSI-ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC--ACSHGGLVEEGKQFFESMLNYGIKPQMEHY---- 487 (719)
Q Consensus 415 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---- 487 (719)
.+|..+ ..++...|++++|...--...+. .++. .+..+++ ++-..++.+.+...|++.+.. .|+-..-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHh
Confidence 344444 23566778888887766555543 2211 2222222 234567788888888877653 3442211
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 488 ---------GCMVDLLARDGRLDEAYGLIQSM-PYDA-----NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 488 ---------~~li~~~~~~g~~~eA~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
.-=.+-..+.|++.+|.+.+.+. .+.| +...|........+.|+.++|+.-.+++++++|.-...
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 11123456889999999999886 4444 44556666666788999999999999999999998889
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
|..-++.+...++|++|.+-+++..+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999987643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0021 Score=54.70 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=60.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCC-cc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGI-KP-QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAA 525 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~ 525 (719)
..+...+...|++++|.+.|..+....- .+ ....+..+..++.+.|++++|.+.++++ ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444455556666666666666653210 01 1234455666777777777777777665 22232 3455666666
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhH
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
+...|+.+.|...++++++..|+++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 7777788888888888888888765433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=63.22 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=80.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCC
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGR 499 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 499 (719)
.-+.+.+++++|+..|.+.++. .| |.+-|..=..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 3467889999999999999984 55 556777778899999999999998888876 4455 7789999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047480 500 LDEAYGLIQSM-PYDANSVIWRALLA 524 (719)
Q Consensus 500 ~~eA~~~~~~~-~~~p~~~~~~~ll~ 524 (719)
+++|++.|++. .+.|+..+|..=|.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999887 67887766655443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0036 Score=67.60 Aligned_cols=62 Identities=19% Similarity=0.092 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..+.++.-.....|+.++|...++++++++|+ ..+|..++.+|...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444433334445555555555555555552 445555555555555555555555555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0032 Score=57.74 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=89.7
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD--GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 489 (719)
.....+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+.. +-+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3445677777788888999999999988886543332 2467777778888899999999888888532 223556667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
+..+|...|+...+..-++.. ...+++|...++++++++|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777766655433321 123677888999999999976 5455555544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0023 Score=58.66 Aligned_cols=81 Identities=12% Similarity=0.006 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
..+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666666777777777777665 11221 34677777778888888888888888888888888888888888
Q ss_pred HhhcCC
Q 047480 560 LAETYR 565 (719)
Q Consensus 560 ~~~~g~ 565 (719)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 877776
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.2 Score=49.89 Aligned_cols=274 Identities=16% Similarity=0.146 Sum_probs=167.3
Q ss_pred cCCHHHHHHHHhhcC---CCChhhHHHHHH--HHHhcCChhHHHHHHHHhHhcCCCCCh--hHHHHHHHHHHccCChHHH
Q 047480 292 EGKIERARQLFDQMD---QRDLVSWTAMIS--GYSQVGGFSQALELFGKMESLGIHPDE--VTMVAVLRACVGLGALDFG 364 (719)
Q Consensus 292 ~g~~~~A~~~f~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a 364 (719)
.|+-..|.+.-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |.. .-+..+.-.--+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555555444332 123333333332 223457777777777777642 221 2233344444567777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChh--cHHHHHHHHH---hCCChhHHHHH
Q 047480 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVS--LFNSIISGLA---QHGLGETSIAV 436 (719)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~--~~~~li~~~~---~~g~~~~A~~~ 436 (719)
+++-+....+. +.-...+.++++..+..|+++.|+++.+.-... .+++. .--.|+.+-+ -.-+...|...
T Consensus 174 r~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 174 RHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 77766333332 233566778888888888888888888764432 24433 2223333222 12345556655
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 047480 437 FREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----P 511 (719)
Q Consensus 437 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~ 511 (719)
-.+..+ +.||-+ .-..-..++.+.|++.++-.+++.+-+.. |.+..+.. -.+.|.|+. +++-+++. .
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCc--HHHHHHHHHHHHh
Confidence 555444 678765 44455668899999999999999998754 54444332 234455643 32222222 2
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhC
Q 047480 512 YDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET-YRWEEARQVRKLMDDS 579 (719)
Q Consensus 512 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 579 (719)
++|| ..+..++..+....|++..|..-.+.+....|.. +.|..|+++-... |+-.+++..+-+....
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4554 4566667777888999999999999999999975 6888999987655 9988888887776654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0038 Score=64.52 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=61.2
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
+...|++++|.+.|+++++.. +.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344566666666666666422 122455556666666666666666666665 3334 3445666666667777777777
Q ss_pred HHHHHHhccCCCCchhHHHHHHHH
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
..++++++++|+++.....+..+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777777766655554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0023 Score=58.47 Aligned_cols=93 Identities=12% Similarity=-0.112 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777788888999998888876 22222 3478888888999999999999999999999998888888888
Q ss_pred HHh-------hcCChHHHHHHHHHH
Q 047480 559 MLA-------ETYRWEEARQVRKLM 576 (719)
Q Consensus 559 ~~~-------~~g~~~~A~~~~~~m 576 (719)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=56.33 Aligned_cols=89 Identities=20% Similarity=0.162 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 047480 490 MVDLLARDGRLDEAYGLIQSMP-YDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (719)
..--+...|++++|..+|+-+- ..| |..-|..|...|...++++.|...+..+..++++||..+...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567899999999998762 233 56678888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047480 568 EARQVRKLMDD 578 (719)
Q Consensus 568 ~A~~~~~~m~~ 578 (719)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0041 Score=59.90 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=86.5
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcC--ChhHHHHHHHHHhccCCCCchhHHH
Q 047480 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAAC-RLHR--NAKIGEIAGQKLLDLEPDHGAHYVL 555 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (719)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++ .+.| ...++..++++++.++|++..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 345889999999999999999999999887 3444 556677766663 3333 5678899999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCC
Q 047480 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPP 585 (719)
Q Consensus 556 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 585 (719)
|+..+...|++.+|...++.|.+.....+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0072 Score=60.16 Aligned_cols=134 Identities=11% Similarity=0.112 Sum_probs=97.5
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHH
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA-CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 493 (719)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357778888888888888888998887542 2223334333333 44457777799999998843 45667888899999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 494 LARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+.+.|+.+.|..+|++. ..-|. ...|...+.--...|+.+...++.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987 22233 35899999999999999999999999999888753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.019 Score=60.25 Aligned_cols=241 Identities=12% Similarity=0.091 Sum_probs=130.5
Q ss_pred ccHHHHHHHHHHcCCCchHHHHHH---------HHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHH--HHHHHHhCCC
Q 047480 73 IFIWNTLMRGYSRSDSPQEALVLY---------TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI--HCHIIKFGLE 141 (719)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~ 141 (719)
.+.+.+-+-.|..+|.+.+|.++- +.+.... .+.-.++..=++|.+.++..--+-+ ++.+.+.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A---LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA---LEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHH---HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334455555677778887776532 2222221 2344456666777776665544333 4556667766
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 047480 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221 (719)
Q Consensus 142 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 221 (719)
|+.... ...++-.|++.+|.++|.+ +|....|+++|.+|+--+ ..+-+.
T Consensus 633 P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~~ 681 (1081)
T KOG1538|consen 633 PNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEFL 681 (1081)
T ss_pred chHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHHh
Confidence 766543 3455667899999888854 567778888888776311 111222
Q ss_pred ccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 047480 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301 (719)
Q Consensus 222 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (719)
..|+.++-+.+...-..- ..++.--.+...++...|+.++|..+
T Consensus 682 ~~g~~~eKKmL~RKRA~W------------------------------------Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADW------------------------------------ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred hcCChHHHHHHHHHHHHH------------------------------------hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 233333222222111110 00111111223444555666665544
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCCh
Q 047480 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381 (719)
Q Consensus 302 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (719)
. ..+|-.+-++++-+++-. .+..++..+..-+-+...+..|.++|. .+..
T Consensus 726 ~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~-k~gD------- 775 (1081)
T KOG1538|consen 726 C------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFL-KMGD------- 775 (1081)
T ss_pred h------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHH-Hhcc-------
Confidence 3 233444444444444322 233444444444556666777777777 3321
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChh
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~ 415 (719)
..+++++....+++++|..+-++.++..+|+.
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 14678888899999999999999888645543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.28 Score=49.53 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (719)
+..|.-+...|+...|.++-.+..- |+..-|-..+.+++..+++++-.++... +-.++-|..++.+|...|.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKV--PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3345556678888999998888877 8888999999999999999876664321 2234788888889999999
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~ 526 (719)
..+|..+...+ .+.--+.+|.++|++.+|.+.--+.. |...+..+..-|
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 99988887652 22456788899999999887755543 444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0035 Score=50.21 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 495 (719)
|..+...+...|++++|+..+++..+. .|+ ...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 344455555555666666665555543 222 2334444444444555555555555444322 112233334444444
Q ss_pred hcCCHHHHHHHHH
Q 047480 496 RDGRLDEAYGLIQ 508 (719)
Q Consensus 496 ~~g~~~eA~~~~~ 508 (719)
..|++++|...++
T Consensus 80 ~~~~~~~a~~~~~ 92 (100)
T cd00189 80 KLGKYEEALEAYE 92 (100)
T ss_pred HHHhHHHHHHHHH
Confidence 4444444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0005 Score=51.78 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=45.0
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35688899999999999999999889999999999999999999988887764
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00093 Score=51.12 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=50.8
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..+.+.++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999999999999999999999999999999988654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.24 Score=49.41 Aligned_cols=255 Identities=12% Similarity=0.118 Sum_probs=168.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH--HccCChHHHHHHHHHHHHHcCCCCChhH--HHH
Q 047480 313 WTAMISGYS--QVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC--VGLGALDFGKRLHQQYIENVVFGRNIFL--TTA 386 (719)
Q Consensus 313 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ 386 (719)
|.+|-.++. -.|+...|.++-.+..+. +..|...+..++.+- .-.|+.+.+++-|+ .|... |.... ...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe-AMl~d---PEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE-AMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH-HHhcC---hHHHHHhHHH
Confidence 444444443 456777777666554432 345666666666554 45699999999999 55432 22221 122
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhc-
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGV--TFVTVLCACSH- 461 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~- 461 (719)
|.-.-.+.|+.+.|...-+..... +.-.-.|.+.+...+..|+++.|+++.+.-++.. +.+|.. .-..||.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333335678888888887776654 3344578999999999999999999998876543 556653 33344443221
Q ss_pred --cCcHHHHHHHHHHHHHcCCccChhH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHH-H
Q 047480 462 --GGLVEEGKQFFESMLNYGIKPQMEH-YGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIG-E 536 (719)
Q Consensus 462 --~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a-~ 536 (719)
..+...|+..-.+..+ +.||..- --.-..+|.+.|++.++-.+++.+ +.+|.+.+|..... .+.|+.-.. .
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHHHH
Confidence 2346666666655554 5677433 333457899999999999999998 67788888876553 355554322 2
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
+-.+++..+.|++......+..+-...|.+..|+.--+..
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3456667799999999999998888888888776544443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00089 Score=49.84 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 490 MVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888999999888887 4456 455777788888889999999999999999999864
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0003 Score=44.14 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.9
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.019 Score=52.35 Aligned_cols=109 Identities=10% Similarity=0.074 Sum_probs=70.6
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHH
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD--GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCM 490 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 490 (719)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++..... .|+ ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 44567777777788888888888888876432222 236777777788888888888888887753 233 4455555
Q ss_pred HHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 491 VDLLA-------RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 491 i~~~~-------~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
...|. +.|++++|.. .+++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc
Confidence 66665 3333333332 2345667777888888864
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.016 Score=62.72 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=103.2
Q ss_pred CCChhcHHHHHHHHHh--CC---ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHHH
Q 047480 411 LKTVSLFNSIISGLAQ--HG---LGETSIAVFREMELMGLKPDGV-TFVTVLCACSHG--------GLVEEGKQFFESML 476 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 476 (719)
+.|...|...+.+... .+ ....|.++|++..+. .|+-. .+..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3788899999988544 33 367899999999984 78764 555544433221 12334444444433
Q ss_pred Hc-CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 477 NY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 477 ~~-g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
.. ....+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 32 12334577888877777889999999999998 577888889999999999999999999999999999998753
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.42 Score=48.80 Aligned_cols=456 Identities=14% Similarity=0.107 Sum_probs=224.5
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCh------hchHHHHHHHhhccCCCCChHHHHHHhccCCCCC-ccHHHHHHHHH--H
Q 047480 14 LLESCKSLKQALQIHGQIVHSGLNH------HISSSQLISFFALSGCKNGLFRSRILFSQIDNPN-IFIWNTLMRGY--S 84 (719)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~ 84 (719)
+|+.-++..++..++..+.+.--.. ..+.+.++++|.. .+++.-........+.. ...|-.+..++ -
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQFGKSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3444447889999999887654322 3678899999997 78887777666654411 33466665554 3
Q ss_pred cCCCchHHHHHHHHhHhC--CCCCC----------CcccH-HHHHHHHhccCCcHHHHHHHHHHHHhCC----CCChhHH
Q 047480 85 RSDSPQEALVLYTSMLSK--GIVSP----------NNFTF-PFVLNSCARLSSFKSGCQIHCHIIKFGL----EFDLFIR 147 (719)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~--g~~~p----------~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~ 147 (719)
+.+.+++|++.+..-... +..+| +.+.+ ...+.++...|++.+|+.++.+++..=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 578899998887766544 32211 11111 2334555678888888888777765543 3677777
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CC
Q 047480 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL--ND 225 (719)
Q Consensus 148 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~--~~ 225 (719)
|.++-++++.=-++- -+.+...=..-|--||..|.+.=+. ++.-.=..+.|...-+..++....-. ..
T Consensus 171 d~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 171 DRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred HHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 777777765421111 1112221122344455555432111 11100011233333333333322111 11
Q ss_pred cHHHHHHHHHHHHhhCCCCCch-HHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH--
Q 047480 226 PRIGKQFHAVVYKNLGCVGSNM-LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF-- 302 (719)
Q Consensus 226 ~~~a~~i~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f-- 302 (719)
+.--.+++..-.+. -+.|+- -+...|..-+.+ +.+++..+.+.. .-+
T Consensus 241 l~~~mq~l~~We~~--yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i--------------------------a~~~i 290 (549)
T PF07079_consen 241 LPPLMQILENWENF--YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI--------------------------ASSKI 290 (549)
T ss_pred ccHHHHHHHHHHhh--ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH--------------------------HHHhH
Confidence 11222222222222 122221 112222222222 222222211111 111
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHH-------HHHHHHHH-ccCChHHH---HHHHHHH
Q 047480 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM-------VAVLRACV-GLGALDFG---KRLHQQY 371 (719)
Q Consensus 303 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~a~~-~~~~~~~a---~~~~~~~ 371 (719)
+.+.+.=+.++..+++..++.++..+|-+.+.-+... .|+...- ..+-+..+ .-.+...- ..++. .
T Consensus 291 ~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe-~ 367 (549)
T PF07079_consen 291 EKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWE-E 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHH-H
Confidence 0011122335556666666777766666666554432 2222100 00111111 11111111 12222 2
Q ss_pred HHHcCCCCChhHHHHH---HHHHHhcCC-hHHHHHHHhcCCCC-CCChhcHHHHHH----HHHhC---CChhHHHHHHHH
Q 047480 372 IENVVFGRNIFLTTAV---IDMYAKCGS-IDTALSVFYKIPKN-LKTVSLFNSIIS----GLAQH---GLGETSIAVFRE 439 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~l---i~~y~k~g~-~~~A~~~~~~~~~~-~~~~~~~~~li~----~~~~~---g~~~~A~~~~~~ 439 (719)
+....+.. .....-| ..-+-+.|. -++|.++++.+..- +-|..+-|.... +|.+. ....+-+.+-+-
T Consensus 368 ~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22222111 1111112 122444454 77888888877654 345544444322 23321 123333444444
Q ss_pred HHHcCCCCCHH----HHHHHHHH--HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 047480 440 MELMGLKPDGV----TFVTVLCA--CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513 (719)
Q Consensus 440 m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~ 513 (719)
..+.|+.|-.+ .-+.|-.| +...|++.++.-+-..+.+ +.|++.+|..+.-.+....+++||.+++.++|
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-- 522 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-- 522 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--
Confidence 45678877443 33444433 4456888888776666655 78999999999999999999999999999986
Q ss_pred CCHHHHHH
Q 047480 514 ANSVIWRA 521 (719)
Q Consensus 514 p~~~~~~~ 521 (719)
|+..+|++
T Consensus 523 ~n~~~~ds 530 (549)
T PF07079_consen 523 PNERMRDS 530 (549)
T ss_pred CchhhHHH
Confidence 56666665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.16 Score=50.69 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCcHHHHHHHHHHHHH--cCCccC--hh
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKP-----DGV-TFVTVLCACSHGGLVEEGKQFFESMLN--YGIKPQ--ME 485 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~--~~ 485 (719)
.+..+...+.+.|++++|+++|++....-... +.. .|...+-.+...|++..|.+.++.... .++..+ -.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 35556677888899999999998887643221 221 233333355667888899999888772 344333 33
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 047480 486 HYGCMVDLLAR--DGRLDEAYGLIQSMP 511 (719)
Q Consensus 486 ~~~~li~~~~~--~g~~~eA~~~~~~~~ 511 (719)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45556666643 345777777777774
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0041 Score=61.65 Aligned_cols=259 Identities=12% Similarity=0.062 Sum_probs=151.7
Q ss_pred HHHhcCChhHHHHHHHHhHhcCCCCCh----hHHHHHHHHHHccCChHHHHHHHHHHHHHc---CCC-CChhHHHHHHHH
Q 047480 319 GYSQVGGFSQALELFGKMESLGIHPDE----VTMVAVLRACVGLGALDFGKRLHQQYIENV---VFG-RNIFLTTAVIDM 390 (719)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~li~~ 390 (719)
-+++.|+....+.+|+..++.|. -|. ..|+.+-++|..++++++|.++|...+.-. |-. ........|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35677777777777777777662 233 335555667777778888887776221100 000 000111122333
Q ss_pred HHhcCChHHHHHHHhcC-------CCCCCChhcHHHHHHHHHhCCC--------------------hhHHHHHHHHHHH-
Q 047480 391 YAKCGSIDTALSVFYKI-------PKNLKTVSLFNSIISGLAQHGL--------------------GETSIAVFREMEL- 442 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 442 (719)
+--.|.+++|...-.+- .........+-.+...|...|+ .+.|.+.|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554332211 1100112234444455544332 2334444443222
Q ss_pred ---cCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH----HcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 047480 443 ---MGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESML----NYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM--- 510 (719)
Q Consensus 443 ---~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~--- 510 (719)
.|-.. -...|..|.+.|.-.|+++.|+..++.-+ ++|-... ...++.+..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 22110 11356666666777889999998887543 4443222 457788889999999999999988764
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 511 ----PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDL----E--PDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 511 ----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+.+ -...+.-+|..+|....+++.|+.++.+-+.+ + -....++..|+++|...|..+.|..+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 23456677888888888899999988776542 2 23356899999999999999999888776653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.077 Score=47.15 Aligned_cols=131 Identities=12% Similarity=0.028 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCHHH
Q 047480 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP------YDANSVI 518 (719)
Q Consensus 445 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~------~~p~~~~ 518 (719)
..|....-..|..+....|+..+|...|++...--+.-|....-.+..+....+++.+|...+++.. -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 4566666667778888888888888888888754445667777777888888888888888888762 22333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
--.+...+.-.|..+.|+..|+.++...|+ +..-...+.++.++|+.++|..-+....+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 233445577789999999999999998886 56777788899999999988776655544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.024 Score=49.55 Aligned_cols=91 Identities=7% Similarity=-0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHG 462 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 462 (719)
-++...+...|++++|.++|+.+... +.+..-|-.|..++-..|++++|+..|...... .|| ...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHc
Confidence 34455566778888888888876654 456677888888888888888888888888774 344 45666777778888
Q ss_pred CcHHHHHHHHHHHHH
Q 047480 463 GLVEEGKQFFESMLN 477 (719)
Q Consensus 463 g~~~~a~~~~~~m~~ 477 (719)
|+.+.|++.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887773
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.09 Score=52.57 Aligned_cols=123 Identities=11% Similarity=0.296 Sum_probs=63.7
Q ss_pred HHHHhc-CCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC-----Chh-HHHH
Q 047480 287 SGYTRE-GKIERARQLFDQMDQ-----RD----LVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-----DEV-TMVA 350 (719)
Q Consensus 287 ~~y~~~-g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ 350 (719)
..|-+. |+++.|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +.. .+..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344444 555555555554432 11 1234556677888888888888888876543221 111 2223
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHc-CCCCC--hhHHHHHHHHHHh--cCChHHHHHHHhcCCC
Q 047480 351 VLRACVGLGALDFGKRLHQQYIENV-VFGRN--IFLTTAVIDMYAK--CGSIDTALSVFYKIPK 409 (719)
Q Consensus 351 ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~li~~y~k--~g~~~~A~~~~~~~~~ 409 (719)
.+-.+...|+...|...++++.... ++..+ ..+...|+++|-. ...+++|..-|+.+..
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 3334455677777777777444332 23222 3445566666654 2346666666766665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.07 Score=56.26 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 047480 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405 (719)
Q Consensus 326 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 405 (719)
+-+.+.-+++|++.|-.|+.... ...|+-.|++.+|..+|. +.|.+ |..++||.....++.|.++..
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk----~~G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK----RSGHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH----HcCch------hhHHHHHHHHHHHHHHHHHhh
Confidence 34455567888888888888654 455677888888888876 23322 334566666666666666654
Q ss_pred cC
Q 047480 406 KI 407 (719)
Q Consensus 406 ~~ 407 (719)
.-
T Consensus 683 ~g 684 (1081)
T KOG1538|consen 683 SG 684 (1081)
T ss_pred cC
Confidence 43
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0069 Score=55.45 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=76.7
Q ss_pred HHHHhcCCCCCCChhcHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 047480 401 LSVFYKIPKNLKTVSLFNSIISGLAQ-----HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG------------- 462 (719)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 462 (719)
...|+......+|-.+|..++..|.+ +|..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 34455543223677777777777764 366677777888999999999999999999887652
Q ss_pred ---CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCC
Q 047480 463 ---GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR 499 (719)
Q Consensus 463 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 499 (719)
.+.+-|++++++|..+|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346789999999999999999999999999988775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.022 Score=56.67 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH-HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA-CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..+.. ++.+...+..-++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56666666666666777777777776432 2233333333333 22345566677777743433 34667777888888
Q ss_pred HHhcCChHHHHHHHhcCCCCCCCh----hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047480 391 YAKCGSIDTALSVFYKIPKNLKTV----SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 455 (719)
+.+.|+.+.|+.+|++.....+.. ..|...+.-=.+.|+.+.+..+.+++.+. -|+...+..+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f 146 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELF 146 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHH
Confidence 888888888888888876652222 36888887777788888888888777763 4443333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.015 Score=47.09 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHcCCccChhHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMGL-KPDGVTFVTVLCACSHGG--------LVEEGKQFFESMLNYGIKPQMEHYG 488 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~ 488 (719)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566667999999999999999999 899999999999877643 3456788899999888999999999
Q ss_pred HHHHHHHh
Q 047480 489 CMVDLLAR 496 (719)
Q Consensus 489 ~li~~~~~ 496 (719)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0015 Score=51.55 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHH
Q 047480 427 HGLGETSIAVFREMELMGL-KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~ 504 (719)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..|+ ....-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666665421 11233333455566666666666666655 21 1122 222223355566666666666
Q ss_pred HHHHh
Q 047480 505 GLIQS 509 (719)
Q Consensus 505 ~~~~~ 509 (719)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0015 Score=49.17 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=33.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRAL 522 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l 522 (719)
..|++++|.++|+.+.... +-+...+..++.+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3566666666666666422 123555555666666666666666666665 234454444333
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.61 Score=47.07 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
+.+..|.-+...|+...|.++-.+..-||-.-|...+.+++..++|++-.++... +-.+.-|-.++.+|...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667788999999999998889999999999999999999887765432 2245788889999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
..+|..+.. . ..+..-+.+|.++|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~-k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIP-K----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHH-h----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888887666 2 11266889999999999987765444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.19 Score=48.73 Aligned_cols=170 Identities=9% Similarity=0.019 Sum_probs=103.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCC-ChhcH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLK-TVSLF---NSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSH 461 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~-~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~ 461 (719)
...+.+.|++++|.+.|+.+....| +...- -.++.+|.+.+++++|...|++..+. .|+. .-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3445567888888888888766522 22222 34456677888888888888888874 3433 344444444332
Q ss_pred --cC---------------cH---HHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-
Q 047480 462 --GG---------------LV---EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR- 520 (719)
Q Consensus 462 --~g---------------~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~- 520 (719)
.+ +. .+|.+.|+.++ +-|-.+....+|...+..+. +...-.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~---~~la~~e 178 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLK---DRLAKYE 178 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHH---HHHHHHH
Confidence 10 11 22333343333 33333333445544444332 111111
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 521 -ALLAACRLHRNAKIGEIAGQKLLDLEPDHG---AHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 521 -~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.+..-|.+.|.+.-|..-++.+++--|+.+ .+...+..+|.+.|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 222337788999999999999999888764 457788899999999999999887664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.011 Score=61.32 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.+++..|...|..++++++++.=...|+-||..||+.|+..+.+.|++..|.++...|.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555555555555555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.019 Score=52.73 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=80.9
Q ss_pred CCcccHHHHHHHHh-----ccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHH
Q 047480 107 PNNFTFPFVLNSCA-----RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181 (719)
Q Consensus 107 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 181 (719)
.|..+|..++..+. +.|.++-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+ ++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~~ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------AE 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------HH
Confidence 56667777777765 346777777788889999999999999999987754 3322 111111 11
Q ss_pred HHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc-HHHHHHHHHHHH
Q 047480 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYK 238 (719)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~ 238 (719)
---| -.+-+-|++++++|...|+.||..|+..+++.+++.+.. ...+++.-++.+
T Consensus 112 F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 224467899999999999999999999999999877653 334444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0038 Score=47.03 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHR-NAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 547 (719)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777777788888888888887776 3344 4557777777788888 68888888888888877
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.079 Score=49.77 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCC-----ChhHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR-----NIFLTTA 386 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 386 (719)
.-+.++..+.-.|.+.-.+.++++.++...+.++...+.+.+.-.+.|+.+.|...++ .+++..-.. +..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~-~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ-DVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHHhhhhccchhHHHHhh
Confidence 3456666667777888888888888887656677778888888888999999988888 555533222 3333334
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 454 (719)
....|.-.+++..|...|.+++.. +.|++.-|.-.-+..-.|+..+|++..+.|.+. .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 444566678888888889888765 566677776666666778899999999999874 555544443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.034 Score=57.76 Aligned_cols=121 Identities=13% Similarity=0.041 Sum_probs=76.6
Q ss_pred CCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhc
Q 047480 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV--VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSL 416 (719)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~ 416 (719)
.+.+...+..+++.+....+++.+..++- ..... ....-..+..++|..|.+.|..+.+..++..=... -||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~-k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLY-KFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHH-HHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456666666777766666666666555 22222 12222344457777777777777777777654333 567777
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (719)
+|.++..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666666666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.008 Score=61.65 Aligned_cols=64 Identities=13% Similarity=-0.078 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh---HHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH---YVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+...|+.+..++...|++++|+..++++++++|++..+ |..++.+|..+|+.++|.+.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666665532 56666666666666666666666555
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.028 Score=47.30 Aligned_cols=56 Identities=21% Similarity=0.013 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCC---CchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 520 RALLAACRLHRNAKIGEIAGQKLLDLEPD---HGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
-.+.+.++..|++++|..++++..+..|+ +......++.++...|+.+||.+.+-.
T Consensus 42 i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 42 IQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555566666666666666555555 444455555566666666666655443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.016 Score=56.66 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDANS----VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG---AHYVLLSN 558 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 558 (719)
|..-+..+.+.|++++|...|+.. ...|+. ..+--+...+...|+++.|...|+++++..|+++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444445555555555544 112221 2333344445556666666666666665555532 33444555
Q ss_pred HHhhcCChHHHHHHHHHHHh
Q 047480 559 MLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 559 ~~~~~g~~~~A~~~~~~m~~ 578 (719)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.6 Score=47.57 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=77.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
-+.-+...|+..+|.++-.+..- ||-..|---+.+++..+++++-+++-+.+. .++-|.....+|.+.|+.+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fki--pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKI--PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCC--cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 34445667888888888888877 888888888888888888877665544332 2566777888888999999
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
+|.+++-+... +.-.+.+|.+.|++.+|.++--+
T Consensus 762 EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 762 EAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 98888754321 11467888888888888776443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.029 Score=45.56 Aligned_cols=80 Identities=16% Similarity=0.080 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCC-CCCCcccHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCChhH
Q 047480 76 WNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARLS--------SFKSGCQIHCHIIKFGLEFDLFI 146 (719)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 146 (719)
-...|..+...+++.....+|+.+++.|+ . |+..+|+.++.+.++.. .+.....+++.++..++.|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~l-Psv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITL-PSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34556667777999999999999999999 6 99999999999987543 24456778899999999999999
Q ss_pred HHHHHHHHHh
Q 047480 147 RNALIHFYSI 156 (719)
Q Consensus 147 ~~~Li~~y~~ 156 (719)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0057 Score=41.12 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
.+|..+..++...|+.++|++.++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778888999999999999999999999999888877764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.01 Score=45.19 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=49.3
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 491 VDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
-.+|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35678888888888888887 4445 4556666777788889999999999999999998765443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.61 Score=45.25 Aligned_cols=66 Identities=5% Similarity=-0.103 Sum_probs=46.4
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCccc----HHHHHHHHhccCCcHHHHHHHHHHHHhCC
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT----FPFVLNSCARLSSFKSGCQIHCHIIKFGL 140 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 140 (719)
+...+-.....+.+.|++++|++.|+++.... |+... .-.+..++.+.++++.|...++..++.-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 33334445556677899999999999998866 44322 13455667788888888888888887753
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.21 Score=47.02 Aligned_cols=168 Identities=11% Similarity=0.010 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCCCh--------hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTV--------SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 455 (719)
+++|+..|.-..-+++-...|+.-......+ ..-+.++..+.-+|.+.-.+.++.+.++...+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 3556666655555555555554432210222 23456666677778888888888888886545566677777
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHH-----HHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV-----DLLARDGRLDEAYGLIQSMPY-DA-NSVIWRALLAACRL 528 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~ 528 (719)
.+.-.+.|+.+.|..+|+...+..-..+....+.++ ..|.-+.++.+|...+.+++. +| |++.-|.-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777888899999988888776332233433333333 345556677777777777742 22 33333333223344
Q ss_pred cCChhHHHHHHHHHhccCCCCch
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.|+...|.+..+.+.+..|....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccch
Confidence 57777888888888887776443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.11 Score=43.80 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=53.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCC--hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHH
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPD--EVTMVAVLRACVGLGALDFGKRLHQQYIENVVF-GRNIFLTTAVIDMYA 392 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~ 392 (719)
...++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..++++.+...+- +.+..+...+.-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778888888888888888776544 234555566667777777777777744433221 011122222223444
Q ss_pred hcCChHHHHHHHhcC
Q 047480 393 KCGSIDTALSVFYKI 407 (719)
Q Consensus 393 k~g~~~~A~~~~~~~ 407 (719)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666665555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.76 Score=41.09 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG---LKPDGVTFV 453 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~ 453 (719)
|++..--.|.......|+..+|...|++.... ..|....-.+..+....+++..|..+++.+.+.. -.|| +-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444445555555666666666666554433 3455555555566666667777777776666532 1222 333
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
.+...+...|...+|..-|+....+ -|+..........+.++|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4455666777777777777777753 355555445566677777776665443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.1 Score=46.26 Aligned_cols=60 Identities=25% Similarity=0.138 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455667778889999999999999999999999999999999999999999999999885
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.048 Score=54.83 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.++..|...+.+.+++..|+....++++++|+|.-+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 455666677888999999999999999999999999999999999999999999999999874
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.58 Score=47.76 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=99.8
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCC-CCh----hcHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 386 AVIDMYAKCGSIDTALSVFYKIPKNL-KTV----SLFNSIISGLAQ---HGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 386 ~li~~y~k~g~~~~A~~~~~~~~~~~-~~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
.++-.|-...+++...++.+.+...+ .++ ..---..-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777777888888887776641 111 111123334555 7888889998888666556777777776665
Q ss_pred HHhc---------cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHH----HHHHHH---Hh-C----CCC--C
Q 047480 458 ACSH---------GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD----EAYGLI---QS-M----PYD--A 514 (719)
Q Consensus 458 a~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~----eA~~~~---~~-~----~~~--p 514 (719)
.|-. ....++|...|.+.-+ +.|+..+--.++-++...|... +..++- .. . ... .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5431 2346777877776654 3455444334444455555322 222222 11 1 122 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
|--.+.+++.++.-.|+.+.|.+++++++.+.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 44556788999999999999999999999998864
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=3 Score=45.66 Aligned_cols=322 Identities=8% Similarity=0.022 Sum_probs=159.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCC---cHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047480 77 NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS---FKSGCQIHCHIIKFGLEFDLFIRNALIHF 153 (719)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 153 (719)
..+|+-++..+.+..|+++-..+...-.+ +...|.....-+.+..+ .+.+..+-+++... . .+...|.....-
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARR 516 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHH
Confidence 34677888888899999888777543222 14555555555554432 22222332222211 1 334456666666
Q ss_pred HHhcCChhHHHHHHccCCCC--------ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 047480 154 YSIFGYINNAHKVFEGSLAR--------DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225 (719)
Q Consensus 154 y~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 225 (719)
-..+|+.+-|+++.+.=+.. +..-+..-+.-..+.|+.+-...++-.|... -+...|...+ .+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hh
Confidence 67789999999988754321 3334556666677788887777777666542 1112222111 12
Q ss_pred cHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-----CCCCchHHHHHHHHHHHhcCCHH----
Q 047480 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-----GMSKSTAAWSSMISGYTREGKIE---- 296 (719)
Q Consensus 226 ~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~---- 296 (719)
...|..++....+.. -...|-+.|-...+.+.+-.+..+. .+.+-........+.+.+.....
T Consensus 588 ~p~a~~lY~~~~r~~--------~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ--------DRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred chhhhHHHHHHHHhh--------chhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHH
Confidence 223333333333320 0011222233333322222211111 01111112222233333332211
Q ss_pred ------HHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHH
Q 047480 297 ------RARQLFDQMDQR-----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365 (719)
Q Consensus 297 ------~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 365 (719)
.-.++++.+... .-.|.+--+.-+..-|+..+|.++-++.+ -||...|-.-+.+++..+++++-.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 111111111110 11234444555566677777776665554 566666666666777777666555
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHH
Q 047480 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437 (719)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 437 (719)
++-+ + ...+.-|.-.+..+.+.|+.++|.+.+.++... .-...+|.+.|++.+|.++-
T Consensus 736 kfAk----s---kksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 736 KFAK----S---KKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHh----c---cCCCCCchhHHHHHHhcccHHHHhhhhhccCCh-------HHHHHHHHHhccHHHHHHHH
Confidence 5433 1 111334455666677777777777777776652 13556666666666666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.5 Score=41.61 Aligned_cols=196 Identities=20% Similarity=0.156 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPK---NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 381 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
..........+...+.+..+...+..... .......+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555566667777777777776666542 124455666666677777778888888887776433331 12222222
Q ss_pred -HHhccCcHHHHHHHHHHHHHcCCcc----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 047480 458 -ACSHGGLVEEGKQFFESMLNYGIKP----QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN--SVIWRALLAACRLH 529 (719)
Q Consensus 458 -a~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~~~~ll~~~~~~ 529 (719)
.+...|+.+.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 67778888888888888754 223 2334444445566778888888888776 23333 56677777778888
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.+.+...+.++.+..|.....+..++..+...|.++++...+......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888875566777777777777788888887777654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=3.1 Score=45.01 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=27.8
Q ss_pred HHHHHHHH--HHhcCChhHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHH
Q 047480 518 IWRALLAA--CRLHRNAKIGEIAGQKLLDLE---PDHGAHYVLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 518 ~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (719)
.|.-+|-+ -...|.++.|.+..-.+...+ |. ...|..|+-+-+....+---.+.|
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP-~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP-AEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH-HHHHHHHHHHHhhhhhhhhhHHHH
Confidence 34444444 344577777777655444321 21 356776666555444444333333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.5 Score=42.88 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=25.0
Q ss_pred HHhCCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 424 LAQHGLGETSIAVFREMELM---GLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+..+|+.--+...
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 34455555555555555431 122333334444444455555555555544444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.14 Score=50.18 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDAN----SVIWRA 521 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~----~~~~~~ 521 (719)
.|...+....+.|++++|...|+.+++. .|+ ...+-.+...|...|++++|...|+.+- ..|+ ...|-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4444444344557777777777777642 233 2355567777778888888887777761 1222 234444
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+...+...|+.+.|...++++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 45556778899999999999998888764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.15 Score=49.47 Aligned_cols=110 Identities=10% Similarity=0.079 Sum_probs=57.9
Q ss_pred CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcCCccChhH
Q 047480 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSH---GGLVEEGKQFFESMLNYGIKPQMEH 486 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~g~~p~~~~ 486 (719)
|.|...|-.|...|...|+++.|..-|.+..+. .|| ...+..+..++.. .....++..+|++++... .-++..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 456666777777777777777777777766652 222 2233333333222 223456666666666421 122444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALL 523 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll 523 (719)
...|...+...|++.+|...++.| ..-|....|..++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 555555566666666666666655 2233333444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.018 Score=44.55 Aligned_cols=61 Identities=18% Similarity=0.042 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDL----EPD---HGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555556666666666555542 111 234677888888888888888888877643
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.57 E-value=3.3 Score=42.48 Aligned_cols=445 Identities=14% Similarity=0.128 Sum_probs=223.4
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCc---cHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI---FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~l 115 (719)
...|=.||.-|.. . |..+.-++++++|..|-. .+|.--+++-....+++....+|.+.+... .+...|..-
T Consensus 42 I~S~fqLiq~~~t--q-~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~---l~ldLW~lY 115 (660)
T COG5107 42 ILSYFQLIQYLET--Q-ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS---LNLDLWMLY 115 (660)
T ss_pred HHHHHHHHHHHhh--h-hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh---ccHhHHHHH
Confidence 4678889999988 7 999999999999987654 469888988888889999999999888765 344445554
Q ss_pred HHHHhccCCcH--H----HHHHHHHHHHh-CCCC-ChhHHHHHHHHHH---------hcCChhHHHHHHccCCC-C--C-
Q 047480 116 LNSCARLSSFK--S----GCQIHCHIIKF-GLEF-DLFIRNALIHFYS---------IFGYINNAHKVFEGSLA-R--D- 174 (719)
Q Consensus 116 l~~~~~~~~~~--~----a~~~~~~~~~~-g~~~-~~~~~~~Li~~y~---------~~g~~~~A~~~f~~~~~-~--~- 174 (719)
+.--.+....- + -.+.++.++.. +++| ....|+..+...- ...++|..++.+.++.. | |
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 54433333211 1 12334444432 3433 3345665554432 12334556666665543 1 1
Q ss_pred ------hhhHHHHHHHHHc---CC----CcchHHHHHHHHH--HCCCCC----ChhhHHHHHHHHhccCCcHHHHHHHHH
Q 047480 175 ------LVSYNTLINGYAQ---VK----EPCPALWLFRKMQ--DSCIQP----DAFTFVAMFSACTELNDPRIGKQFHAV 235 (719)
Q Consensus 175 ------~~~~~~li~~~~~---~g----~~~~A~~~~~~m~--~~g~~p----d~~t~~~ll~a~~~~~~~~~a~~i~~~ 235 (719)
-..|..=+..... .| -+-.|.+.+++.. -.|++. +..|++-+-+. .+.. -....+.
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~----s~S~-WlNwIkw 270 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART----SDSN-WLNWIKW 270 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc----ccch-hhhHhhH
Confidence 1122211211111 11 2345566666653 234432 22333332110 0000 0000000
Q ss_pred HHHhhCCCCCch--------HHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 047480 236 VYKNLGCVGSNM--------LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307 (719)
Q Consensus 236 ~~~~~~~~~~~~--------~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 307 (719)
-.+. ++...- .+++..+. -+.-...+|----..+...++-+.|.....+-.+
T Consensus 271 E~en--~l~L~~~~~~qRi~y~~~q~~~------------------y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~ 330 (660)
T COG5107 271 EMEN--GLKLGGRPHEQRIHYIHNQILD------------------YFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE 330 (660)
T ss_pred hhcC--CcccCCCcHHHHHHHHHHHHHH------------------HhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc
Confidence 0011 111000 11111111 1122223333333333444555555555444322
Q ss_pred CChhhHHH-HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH---HccCChHHHHHHHHHHHHHcCCCCChhH
Q 047480 308 RDLVSWTA-MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC---VGLGALDFGKRLHQQYIENVVFGRNIFL 383 (719)
Q Consensus 308 ~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 383 (719)
-.. +.+. +-..|-..++.+.....|+...+.= ..-|. .+.+= ..-|+.+.-.+++-.... .-..+
T Consensus 331 ~sp-sL~~~lse~yel~nd~e~v~~~fdk~~q~L----~r~ys-~~~s~~~s~~D~N~e~~~Ell~kr~~-----k~t~v 399 (660)
T COG5107 331 MSP-SLTMFLSEYYELVNDEEAVYGCFDKCTQDL----KRKYS-MGESESASKVDNNFEYSKELLLKRIN-----KLTFV 399 (660)
T ss_pred CCC-chheeHHHHHhhcccHHHHhhhHHHHHHHH----HHHHh-hhhhhhhccccCCccccHHHHHHHHh-----hhhhH
Confidence 111 1111 1122222333333333333322100 00000 00000 011223323332221221 23456
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF-VTVLCAC 459 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~ 459 (719)
+...++.-.+..-++.|+.+|-+..+. .+++..++++|.-++. |+..-|..+|+--... -||...| .-.+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 777777777777788888888776654 4677788888887764 6677788888765442 4555433 3455566
Q ss_pred hccCcHHHHHHHHHHHHHcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQ--MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDANSVIWRALLAACRLH 529 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~ 529 (719)
...++-+.|+.+|+..+.. +..+ ...|..+++-=..-|++..+..+=+++. .-|...+-....+-|...
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 6778888999999866621 2333 5688888888888999988887777662 334444444444445443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.39 Score=40.25 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 582 (719)
....-+++....|+-+.-.+++..+.+-+..+|.....++++|.+.|...++.+++++.-++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445667778888888888888888666567889999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.12 Score=43.01 Aligned_cols=90 Identities=20% Similarity=0.113 Sum_probs=69.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc----hhHHHHHHHHhhcCC
Q 047480 492 DLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG----AHYVLLSNMLAETYR 565 (719)
Q Consensus 492 ~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 565 (719)
-++...|++++|++.|.+. ..- .....||.-..+++-+|+.++|+.-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566788888888888765 222 3677888888888889999999998888888754433 257788888999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 047480 566 WEEARQVRKLMDDSGI 581 (719)
Q Consensus 566 ~~~A~~~~~~m~~~~~ 581 (719)
-+.|+.-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888877664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.71 Score=43.48 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=86.5
Q ss_pred HHHhcCChHHHHHHHhcCCCCCC----ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcc-
Q 047480 390 MYAKCGSIDTALSVFYKIPKNLK----TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHG- 462 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~- 462 (719)
.+...|++++|.+.|+.+....| -....-.++.++-+.|++++|...++++++. -|+. ..+...+.+.+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34556777777777766654311 1224455666777777788888777777764 3333 2222222222211
Q ss_pred ------------CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH--HHHHHHh
Q 047480 463 ------------GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA--LLAACRL 528 (719)
Q Consensus 463 ------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~--ll~~~~~ 528 (719)
+...+|...|+ .++.-|=.+....+|...+..+. +...-.. +..-|.+
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHC
T ss_pred hCccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 11222333333 33334444444445544444332 1111111 2334788
Q ss_pred cCChhHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCChHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGA---HYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 570 (719)
.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999998654 4667888999999888544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.24 Score=51.21 Aligned_cols=63 Identities=17% Similarity=0.040 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
|+.....+..+....++.+.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.++...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444444444445556666666666666666666666666666666666666666665543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.29 E-value=5.9 Score=43.72 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=95.2
Q ss_pred HHHHHhcCChHHHHHHHHHc-CCCC---chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047480 254 INMYAKCGLMNMAERVFSTM-GMSK---STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329 (719)
Q Consensus 254 i~~y~~~g~~~~a~~~~~~~-~~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 329 (719)
++-+.+.+.+++|+...+.. |..+ -..++..+|+.+.-.|++++|....-.|...+..-|---+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45566778889999888887 6666 4568889999999999999999999999888888887777777777665543
Q ss_pred HHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcC-------------------CCCChhHHHHHHHH
Q 047480 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV-------------------FGRNIFLTTAVIDM 390 (719)
Q Consensus 330 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~li~~ 390 (719)
..+ +.....+.++..|-.++..+.. .+. ..+++ ++.... ..-+..+...|+..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e-~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLE-LIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH-HHH---HHHHH-HHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 322 1111111234445555555544 111 11111 111100 01222344568899
Q ss_pred HHhcCChHHHHHHHhcCCC
Q 047480 391 YAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~ 409 (719)
|...+++.+|..++-...+
T Consensus 515 Yl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHccChHHHHHHHHhccC
Confidence 9999999999998877765
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.15 Score=48.46 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=86.6
Q ss_pred HHHHHHhcCCCCCCChhcHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc---------
Q 047480 399 TALSVFYKIPKNLKTVSLFNSIISGLAQH-----GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL--------- 464 (719)
Q Consensus 399 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--------- 464 (719)
..++.|..+....+|-.+|-+++..+..+ +..+=....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 34566777764448888899988888654 4566667778999999999999999999988766432
Q ss_pred -------HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 047480 465 -------VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL-DEAYGLIQSM 510 (719)
Q Consensus 465 -------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~eA~~~~~~~ 510 (719)
-+=+..++++|..+|+.||.++-..|+.+++|.|.. .+..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 244788999999999999999999999999999864 3344444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.025 Score=43.73 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-------P-YDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|+.++|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555554444433 1 0111 23444555556666666666666665543
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.13 Score=51.38 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHcCCCchHHHHHHHHhHhCCCCCCCcc----cHHHHHHHHhccCCcHHHHHHHH
Q 047480 82 GYSRSDSPQEALVLYTSMLSKGIVSPNNF----TFPFVLNSCARLSSFKSGCQIHC 133 (719)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~ 133 (719)
-+++.|+.+..+.+|+..++.|. -|.. .|+.+.++|.-.+++++|.++|.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 46777777777777777777763 2333 34445555555666666666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.71 Score=48.02 Aligned_cols=151 Identities=16% Similarity=0.137 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
.+++.-+++-++..+ +.||..+.-.++ +--.+..+.++.++|++..+.|- ..+..- ......|. ..+.+
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~---~~e~~ 250 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH---FWEAW 250 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc---hhhhh
Confidence 344444555555554 467665444333 33345567888888888775431 000000 00001111 11111
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCC
Q 047480 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD--HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585 (719)
Q Consensus 508 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 585 (719)
.+-..+|-..+=..|...+++.|+.++|.+.++.+++..|. +-.....|+..|...+++.++..++.+-.+....+..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 11112222333345666678889999999999999887764 3456778888899999999999888887655554444
Q ss_pred cccE
Q 047480 586 GWSY 589 (719)
Q Consensus 586 ~~s~ 589 (719)
.++|
T Consensus 331 ti~Y 334 (539)
T PF04184_consen 331 TICY 334 (539)
T ss_pred HHHH
Confidence 4444
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.2 Score=41.89 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCCCCCCc----ccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 047480 78 TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN----FTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139 (719)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 139 (719)
.....+.+.|++.+|++.|+.+.... |+. ...-.+..++-+.|+++.|...++..++.-
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~---P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY---PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445566777777777777777654 322 234455666667777777777777776654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.41 Score=41.24 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh---HHHHHHHHhh
Q 047480 491 VDLLARDGRLDEAYGLIQSM----PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH---YVLLSNMLAE 562 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 562 (719)
.....+.|++++|.+.|+.+ |..| ..-.--.|+.++...+++++|...+++.+++.|.++.+ +...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34445778888888888877 3333 23345567778888888999999999999988877643 3333333444
Q ss_pred cCC---------------hHHHHHHHHHHHhC
Q 047480 563 TYR---------------WEEARQVRKLMDDS 579 (719)
Q Consensus 563 ~g~---------------~~~A~~~~~~m~~~ 579 (719)
+.. ..+|..-|+.+.++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 333 55666666666553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.22 Score=42.43 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHH---------------HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 047480 449 GVTFVTVLCACSHGGLVEEGKQFFESML---------------NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--- 510 (719)
Q Consensus 449 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~---------------~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--- 510 (719)
..++..++.++++.|+++....+.+..- ...+.|+.....+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444455555555555555444443321 2234577777777888888888888887777654
Q ss_pred -CCCCCHHHHHHHHHHHHh
Q 047480 511 -PYDANSVIWRALLAACRL 528 (719)
Q Consensus 511 -~~~p~~~~~~~ll~~~~~ 528 (719)
+++-+...|..|+.-+..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 444456777777766543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.9 Score=39.93 Aligned_cols=173 Identities=12% Similarity=0.069 Sum_probs=95.2
Q ss_pred HhcCChHHHHHHHhcCCCC-CCChh---cHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHhcc--
Q 047480 392 AKCGSIDTALSVFYKIPKN-LKTVS---LFNSIISGLAQHGLGETSIAVFREMELM-GLKPDG--VTFVTVLCACSHG-- 462 (719)
Q Consensus 392 ~k~g~~~~A~~~~~~~~~~-~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~a~~~~-- 462 (719)
.+.|++++|.+.|+.+... +-+.. +--.++-++-+.+++++|+..+++.... +-.||. +.|...++-+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4568888888888887754 22332 3334455677788888888888887763 223332 2333333322221
Q ss_pred --CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHH
Q 047480 463 --GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW--RALLAACRLHRNAKIGEIA 538 (719)
Q Consensus 463 --g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~ 538 (719)
.+...+.+.|..+.+ ++.-|=.+.-..+|..-+..+. |.... .++..-|.+.|.+..|..-
T Consensus 125 ~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 125 VTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred cccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 222223333322221 1111111111112222211111 11111 1223447888999999999
Q ss_pred HHHHhccCCCCch---hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 539 GQKLLDLEPDHGA---HYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 539 ~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.+++--|+.+. .+..+..+|...|..++|.+.-+-+...
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 9999987766543 4667788999999999999987776643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.7 Score=40.84 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-----CC--CCH-HHHHHHHHHHHhcCChhHHHHHHHHHhc----cCCCCchhH
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSMP-----YD--ANS-VIWRALLAACRLHRNAKIGEIAGQKLLD----LEPDHGAHY 553 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~~-----~~--p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 553 (719)
.|......|.|..+++||-..|.+-. .. |+. -.+-+.|-.+....++..|++.++.--+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34455566777777777666555431 11 121 1233333334555677777777777544 356666677
Q ss_pred HHHHHHHhhcCChHHHHHHH
Q 047480 554 VLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 554 ~~l~~~~~~~g~~~~A~~~~ 573 (719)
..|+.+| ..|+.|++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777776 567777766553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.76 E-value=7.1 Score=41.85 Aligned_cols=128 Identities=12% Similarity=0.150 Sum_probs=78.5
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHH
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT-FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 150 (719)
+...|+.+|..--+....+.+...|..++..- |..+- |.....-=.+.|..+.+..+|+..+. |++.++..|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 44557777765555555566666777776544 44432 22222223466777777777777664 445666666666
Q ss_pred HHHHHh-cCChhHHHHHHccCCC------CChhhHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047480 151 IHFYSI-FGYINNAHKVFEGSLA------RDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203 (719)
Q Consensus 151 i~~y~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (719)
+..... .|+.+..+..|+.... .....|...|.--...+++.....+|++.++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 555443 3666666667765332 2445677777777777777888888877775
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.16 Score=52.49 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS----VIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
...++.+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444555555555555555442 334432 23455555555555555555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.27 Score=43.45 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=30.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HcCCccChhH
Q 047480 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-----NYGIKPQMEH 486 (719)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~ 486 (719)
.++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. +.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34444445555555555555555431 2234455555555555555555555555442 3455555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.9 Score=44.88 Aligned_cols=144 Identities=8% Similarity=0.008 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC
Q 047480 430 GETSIAVFREMEL-MGLKPDGV-TFVTVLCACS---------HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG 498 (719)
Q Consensus 430 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 498 (719)
.+.|+.+|.+... +.+.|+-. .|..+...+. ......+|.+.-+..++.+ .-|......+..++.-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4567888888872 23566653 3333322211 1334567777777777654 445777777888888888
Q ss_pred CHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH--HHHHHHHhhcCChHHHHHHHH
Q 047480 499 RLDEAYGLIQSM-PYDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY--VLLSNMLAETYRWEEARQVRK 574 (719)
Q Consensus 499 ~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~ 574 (719)
+++.|..+|++. ...||. .+|......+...|+.++|.+..+++++++|....+- -..+++|...+ .++|.+++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 999999999998 466754 4565555567788999999999999999999865443 34445676654 566666654
Q ss_pred H
Q 047480 575 L 575 (719)
Q Consensus 575 ~ 575 (719)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.1 Score=43.85 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=85.4
Q ss_pred hcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH--H--HHHhccCcHHH
Q 047480 393 KCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV--L--CACSHGGLVEE 467 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l--~a~~~~g~~~~ 467 (719)
-.|+..+|-..++++.+. |.|..+|+--=.+|..+|+.+.-...+++..-. ..||...|.-+ + -++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356666666666666555 667777777777777777777777777766543 34554322211 1 23345677777
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHHH
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN-------SVIWRALLAACRLHRNAKIGEIAGQ 540 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (719)
|.+.-++..+.+ +.|.-.-.++...+.-.|++.|+.++..+-...-+ ..-|..-+ .+...+.++.|+.+|.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHHHH
Confidence 777666665432 22334445566666677777777777766531111 01122111 1233456677776665
Q ss_pred HHh--ccCCCCc
Q 047480 541 KLL--DLEPDHG 550 (719)
Q Consensus 541 ~~~--~~~p~~~ 550 (719)
+-+ +++.+|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 432 3455554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.7 Score=42.23 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=88.6
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChhH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL---LAACRLHRNAKI 534 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~~ 534 (719)
.....|+..++...|+...... .-+...--.|..+|...|+.++|..++..+|.+-...-|..+ +....+..+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4667899999999999988532 223566677889999999999999999999865444444442 222333333332
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.. .+++-+..+|+|...-..|+..|...|+.++|.+.+=.+..+.
T Consensus 222 ~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 222 IQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22 3445567799999999999999999999999999887777653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.19 E-value=7.8 Score=39.92 Aligned_cols=442 Identities=12% Similarity=0.073 Sum_probs=237.8
Q ss_pred HHHHHHhccCCC-C-CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHH
Q 047480 59 FRSRILFSQIDN-P-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136 (719)
Q Consensus 59 ~~A~~~f~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 136 (719)
.+-.++=+++.. | |..+|-.||.-|...+.+++..+++++|...- |--...|..-+++=....++.....+|.+.+
T Consensus 26 ~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf--p~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 26 GDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF--PIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred chHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC--ccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 344466666654 4 67789999999999999999999999997643 1234567777777667789999999999998
Q ss_pred HhCCCCChhHHHHHHHHHHhcCC---------hhHHHHHHcc--CCC-CChhhHHHHHHHHH---cCCCcc------hHH
Q 047480 137 KFGLEFDLFIRNALIHFYSIFGY---------INNAHKVFEG--SLA-RDLVSYNTLINGYA---QVKEPC------PAL 195 (719)
Q Consensus 137 ~~g~~~~~~~~~~Li~~y~~~g~---------~~~A~~~f~~--~~~-~~~~~~~~li~~~~---~~g~~~------~A~ 195 (719)
+..+. +..|..-++---+... +-+|-++.-. +.+ ....-|+..+.-+- ..|.++ ...
T Consensus 104 ~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 87654 5555555544333321 1122221111 111 23445665544322 233333 333
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhC-----C-CCCchHHHHHHHHHHHhcCChHHHHHH
Q 047480 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG-----C-VGSNMLLKTAVINMYAKCGLMNMAERV 269 (719)
Q Consensus 196 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-----~-~~~~~~~~~~li~~y~~~g~~~~a~~~ 269 (719)
+.+.+|+.. -.|++++...-++....... . +.....+| ..|...
T Consensus 182 ~~Y~ral~t-----------------P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~y-------------m~ar~~ 231 (660)
T COG5107 182 NGYMRALQT-----------------PMGNLEKLWKDYENFELELNKITARKFVGETSPIY-------------MSARQR 231 (660)
T ss_pred HHHHHHHcC-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHH-------------HHHHHH
Confidence 444444432 11222222211111110000 0 00000011 111111
Q ss_pred HHHc-----CC----CCchHH-----------HHHHHHHHHh-----cCCH--HHHHHHHhhcCC---CChhhHHHHHHH
Q 047480 270 FSTM-----GM----SKSTAA-----------WSSMISGYTR-----EGKI--ERARQLFDQMDQ---RDLVSWTAMISG 319 (719)
Q Consensus 270 ~~~~-----~~----~~~~~~-----------~~~li~~y~~-----~g~~--~~A~~~f~~m~~---~~~~~~~~li~~ 319 (719)
+++. |+ +.+..+ |-..|.-=.. .|+. ..-.-+|++... -....|----.-
T Consensus 232 yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y 311 (660)
T COG5107 232 YQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEY 311 (660)
T ss_pred HHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1111 11 001111 2222221111 1111 111112222221 122334443444
Q ss_pred HHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccC-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---hcC
Q 047480 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA---KCG 395 (719)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~---k~g 395 (719)
+...++-+.|+....+-... .|. +...+.-|..+. +-+.....|+....... ---+.++.=+ ..|
T Consensus 312 ~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~------r~ys~~~s~~~s~~D~ 380 (660)
T COG5107 312 LIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK------RKYSMGESESASKVDN 380 (660)
T ss_pred HhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH------HHHhhhhhhhhccccC
Confidence 55677778888776654322 233 333344443332 33333333332111000 0000000000 123
Q ss_pred ChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
+.+...+++-+-.. .-...|...+..-.+..-.+.|..+|-+..+.| +.|+...+++++.-+ ..|+..-|..+|+.
T Consensus 381 N~e~~~Ell~kr~~--k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifel 457 (660)
T COG5107 381 NFEYSKELLLKRIN--KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFEL 457 (660)
T ss_pred CccccHHHHHHHHh--hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHH
Confidence 44433333322222 445678888988888888999999999999998 567777888888655 45888999999987
Q ss_pred HHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 475 MLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP--YDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 475 m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
-..+ -|| ...-+-.++-+.+-++-..|..+|+... +..+ ..+|..+|.--..-|+...+..+-+++.++.|+.
T Consensus 458 Gl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 458 GLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6632 244 3344566778889999999999999651 2223 5689999999899999999999999999999986
Q ss_pred c
Q 047480 550 G 550 (719)
Q Consensus 550 ~ 550 (719)
.
T Consensus 536 n 536 (660)
T COG5107 536 N 536 (660)
T ss_pred h
Confidence 3
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.66 Score=39.54 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHcc
Q 047480 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358 (719)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (719)
..++.++|-++++.|+++....+.+..=.-|+. +-...+. --......|+..++.+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445566666666666666666665543211110 0000000 111233566777777777777777
Q ss_pred CChHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047480 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391 (719)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 391 (719)
+++..|.++.+......+++.+..+|..|++-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777776666666666666666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=5.8 Score=37.42 Aligned_cols=199 Identities=16% Similarity=0.087 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CChhcHHHHHH-
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENV-VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL-KTVSLFNSIIS- 422 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-~~~~~~~~li~- 422 (719)
.........+...+....+...+. ..... ........+..+...+...++...+...+....... .+...+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLE-KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHH-HHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344444444555555555555544 22211 222334444555556666666777777777665431 22222333333
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHHhc
Q 047480 423 GLAQHGLGETSIAVFREMELMGLKP----DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARD 497 (719)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 497 (719)
.+...|+.+.|...|.+... ..| ....+......+...++.+.+...+....... .. ....+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence 67888888899888888855 333 22344444444667888999999998888532 22 367777888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 498 GRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 498 g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
+++++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999888876 33444 445555555555667799999999999998886
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.80 E-value=14 Score=41.53 Aligned_cols=123 Identities=11% Similarity=-0.074 Sum_probs=57.5
Q ss_pred chHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHH-cCCCchHHHHHHHHhHhCCCCCCCcc-----cHH
Q 047480 40 ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS-RSDSPQEALVLYTSMLSKGIVSPNNF-----TFP 113 (719)
Q Consensus 40 ~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~p~~~-----~~~ 113 (719)
.-|-.||.+-.+ | ++.+.+-|.--|..+..++-.+...|. .+.++++|...+++.....-. ++.. .-.
T Consensus 31 ~~Y~kLI~~ai~--C---L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ 104 (608)
T PF10345_consen 31 KQYYKLIATAIK--C---LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQF 104 (608)
T ss_pred HHHHHHHHHHHH--H---HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHH
Confidence 446666666666 5 333333222222234455566666666 567788888877766443321 2211 112
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCC----CChhHHHHH-HHHHHhcCChhHHHHHHcc
Q 047480 114 FVLNSCARLSSFKSGCQIHCHIIKFGLE----FDLFIRNAL-IHFYSIFGYINNAHKVFEG 169 (719)
Q Consensus 114 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~L-i~~y~~~g~~~~A~~~f~~ 169 (719)
.++..+.+.+. ..|....+..++.--. +-.+.+.-+ +..+...++...|.+.++.
T Consensus 105 ll~~i~~~~~~-~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~ 164 (608)
T PF10345_consen 105 LLARIYFKTNP-KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQS 164 (608)
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 23333333333 3366666665543211 112222222 2222223566666666654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.76 E-value=7.9 Score=38.50 Aligned_cols=17 Identities=6% Similarity=-0.349 Sum_probs=10.9
Q ss_pred HHhcCChhHHHHHHHHH
Q 047480 526 CRLHRNAKIGEIAGQKL 542 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~ 542 (719)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45666777777766644
|
It is also involved in sporulation []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.83 Score=46.26 Aligned_cols=138 Identities=16% Similarity=0.010 Sum_probs=94.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 500 (719)
.+.|.+.|++..|..-|++.... |. +...-+.++..... ..-...+..|.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 35677777888887777776542 00 11111112222111 12234566778888999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH-HHHHHHHH
Q 047480 501 DEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA-RQVRKLMD 577 (719)
Q Consensus 501 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 577 (719)
.+|++..++. ..+| |.-..-.=..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+....++. .+++..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888776 3444 5555556667888999999999999999999999988888888777666655554 77888886
Q ss_pred hC
Q 047480 578 DS 579 (719)
Q Consensus 578 ~~ 579 (719)
.+
T Consensus 354 ~k 355 (397)
T KOG0543|consen 354 AK 355 (397)
T ss_pred hc
Confidence 54
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.67 E-value=2.7 Score=36.69 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=9.6
Q ss_pred HHHHHHhccCcHHHHHHHHHH
Q 047480 454 TVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~ 474 (719)
.++..|.+.+.++++.-++..
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHh
Confidence 344444444444444444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.47 E-value=1.9 Score=45.83 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=87.1
Q ss_pred HHhcCChhHHHHHHH--HhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 047480 320 YSQVGGFSQALELFG--KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397 (719)
Q Consensus 320 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 397 (719)
..-+++++++.+..+ ++.. .++ ..-...++.-+.+.|..+.|.++-.. | ..-.+...++|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D--------~-----~~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD--------P-----DHRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS---------H-----HHHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC--------h-----HHHhHHHHhcCCH
Confidence 345666666665554 1111 111 23355566666666777766665541 1 2334556678888
Q ss_pred HHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 398 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
+.|.++-++. .+...|..|.......|+.+-|.+.|.+... |..|+-.|.-.|+.+.-.++-+....
T Consensus 335 ~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888877666 3556788888888888888888888876542 34455556667777666666655554
Q ss_pred cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047480 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511 (719)
Q Consensus 478 ~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~ 511 (719)
.| -++....++.-.|+.++..+++.+.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44 13334444455566666666666653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.53 Score=45.18 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=33.0
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDH---GAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.++...|+++.|...|..+.+-.|++ |.++.-|+....+.|+.++|..++++..++
T Consensus 186 e~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 186 ESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34445555555555555555544433 345666666666777777777776666654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.44 E-value=13 Score=40.05 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=98.8
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHHHHh----cCChHHHHHHHHHc-CCCCchHHH
Q 047480 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM-----LLKTAVINMYAK----CGLMNMAERVFSTM-GMSKSTAAW 282 (719)
Q Consensus 213 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~-----~~~~~li~~y~~----~g~~~~a~~~~~~~-~~~~~~~~~ 282 (719)
+..++...+=.||.+.|.+.+....+. .++.... ..|...+..+.. ....+.+.+++..+ ..-|+...|
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 455666666778888888888887664 2333222 233333433333 44567788888888 444554444
Q ss_pred H-HHHHHHHhcCCHHHHHHHHhhcCC-------CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH
Q 047480 283 S-SMISGYTREGKIERARQLFDQMDQ-------RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354 (719)
Q Consensus 283 ~-~li~~y~~~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 354 (719)
. .-.+.+...|++++|.+.|+.... -....+--+.-.+.-..++++|.+.|.++.+.. ..+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3 345667788999999999997553 122334455666778899999999999998753 3455555555554
Q ss_pred H-HccCCh-------HHHHHHHH
Q 047480 355 C-VGLGAL-------DFGKRLHQ 369 (719)
Q Consensus 355 ~-~~~~~~-------~~a~~~~~ 369 (719)
| ...++. ++|.+++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHH
Confidence 4 345556 66666666
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.38 E-value=5 Score=34.99 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=80.6
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHH
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 493 (719)
......++..+.+.+.......+++.+...+ ..+....+.++..|++.. .++..++++. .++.......+..
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 3445567777777788888888888888765 355567777777777653 3444455442 1233344456777
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH-RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
+.+.+.++++.-++.+++.. ...+..+..+ ++.+.|.+.+.+ ++++..|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77788888888888877532 2222233334 778888887775 234556666665543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=5.1 Score=41.92 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=145.8
Q ss_pred chHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHH
Q 047480 40 ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119 (719)
Q Consensus 40 ~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~ 119 (719)
.+-|+++..|.. |-+.-.++.++.| ..-+++..+..+-.+.-...+..+|+.-| .+...|..++++|
T Consensus 43 ~~k~si~~lyis----g~~~~s~~~l~d~------~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y 109 (711)
T COG1747 43 HSKNSIIALYIS----GIISLSKQLLDDS------CLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCY 109 (711)
T ss_pred HhhhhhHHHHHH----HHHHhhhccccch------HHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHH
Confidence 567888888886 7777777766654 35678889999988888899999999988 7888999999999
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC-----C-Ch---hhHHHHHHHHHcCCC
Q 047480 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-----R-DL---VSYNTLINGYAQVKE 190 (719)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~-~~---~~~~~li~~~~~~g~ 190 (719)
... .-+.-..+++++++..+ .|++....|...|-+ ++.+.+..+|.+... + +. ..|.-|+..- ..+
T Consensus 110 ~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD 184 (711)
T COG1747 110 KEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDD 184 (711)
T ss_pred Hhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--ccc
Confidence 988 45777889999988875 466677777777776 888899888876432 2 11 2577666522 345
Q ss_pred cchHHHHHHHHHH-CCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 047480 191 PCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257 (719)
Q Consensus 191 ~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y 257 (719)
.+..+++..+... .|..--...+-.+-.-|....+++++.++...+.+. ...|+.....++..+
T Consensus 185 ~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~---d~k~~~ar~~~i~~l 249 (711)
T COG1747 185 KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH---DEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh---cchhhhHHHHHHHHH
Confidence 6666666666643 355555566666777788899999999999988887 455666665555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.32 E-value=4.4 Score=34.21 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=50.9
Q ss_pred cCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 047480 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
||++......+-.+. .+.......+.....+|+-+.-.+++.++.+. -.|++.....+.+||.+.|+..++.+++.
T Consensus 69 C~NlKrVi~C~~~~n---~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN---KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -S-THHHHHHHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hcchHHHHHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 444444444443332 23334556677788888888888888887653 37777888888888888898888888888
Q ss_pred HHHHcCCc
Q 047480 474 SMLNYGIK 481 (719)
Q Consensus 474 ~m~~~g~~ 481 (719)
++-+.|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 88887753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.3 Score=37.50 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=107.7
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHH
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 468 (719)
|-..|-..-|+--|.+.... |.-+..||-+.--+...|+++.|.+.|+...+. .|.- .++..-.-++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhh
Confidence 33445555555555554443 344557888888889999999999999988874 3322 2332222245567888888
Q ss_pred HHHHHHHHHcCCccChhHHHHHH-HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMV-DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
.+=|...-.. .|+. -|.+|- -.-.+.-+..+|..-+.+--.+.|..-|...|-.+.-..--+ +.+++++.+-..
T Consensus 153 q~d~~~fYQ~--D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQD--DPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhc--CCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhcc
Confidence 7766555422 2222 222221 122233456666654433222346667777666543322111 223344433322
Q ss_pred CC-------chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 548 DH-------GAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 548 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
++ ..+|.-|+.-|...|..++|..+|+.....+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 32 3578999999999999999999999987544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.13 Score=31.95 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777777788888888888888888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.8 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=11.9
Q ss_pred HHHHHHHHccCChHHHHHHHH
Q 047480 349 VAVLRACVGLGALDFGKRLHQ 369 (719)
Q Consensus 349 ~~ll~a~~~~~~~~~a~~~~~ 369 (719)
..++....-.|+-+.|.+.+.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~ 212 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLW 212 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHH
Confidence 344455555566666666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.7 Score=43.17 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=27.4
Q ss_pred HHhcCChhHHHHHHHHhHhc--CCCCChhHHHHHHHHHHccCChHHHHHH
Q 047480 320 YSQVGGFSQALELFGKMESL--GIHPDEVTMVAVLRACVGLGALDFGKRL 367 (719)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 367 (719)
+.+..+.++|+..+.+-..+ ...--..++..+..+.++.|..+++...
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 44567778888887776643 1111224555566666666666555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.10 E-value=4.8 Score=37.94 Aligned_cols=143 Identities=14% Similarity=0.064 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-----VTFVTVL 456 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll 456 (719)
..++--..+|..+|..+.|-..+++..+ ...+-++++|+++|++...--..-+. ..+..+-
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak--------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK--------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH--------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 3455667788888888877776665433 23345677777777765532111111 1233344
Q ss_pred HHHhccCcHHHHHHHHHHHH----HcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHH
Q 047480 457 CACSHGGLVEEGKQFFESML----NYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM---P--YDA-NSVIWRALLAA 525 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~----~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~---~--~~p-~~~~~~~ll~~ 525 (719)
..+.+...+++|-..|.+-. +..--++ -..|-..|-.|.-..++..|...++.- | ..| +..+...||.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 45556666776665554432 1111122 223455556666778899999999884 3 222 55688888888
Q ss_pred HHhcCChhHHHHHH
Q 047480 526 CRLHRNAKIGEIAG 539 (719)
Q Consensus 526 ~~~~g~~~~a~~~~ 539 (719)
| ..|+.|+...++
T Consensus 238 y-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVL 250 (308)
T ss_pred h-ccCCHHHHHHHH
Confidence 7 457777776654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.09 E-value=8.6 Score=44.62 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=32.7
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH
Q 047480 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356 (719)
Q Consensus 293 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 356 (719)
|++++|..-+..+. ...|.-.+.---++|.+.+|+.++ .|+...+..+..+|+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya 946 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYA 946 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHH
Confidence 45677776666665 233444455556778888888775 566666665555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.2 Score=31.04 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.|..+...+...|++++|+..++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666677777777777777777777754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.36 Score=43.59 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=67.8
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 493 LLARDGRLDEAYGLIQSM-P-YDA-----NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
-+.+.|++++|..-|.+. . .++ ..+.|..-..+..+.+..+.|+..+.+++++.|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777776666554 1 111 234455555667788999999999999999999888888888999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 047480 566 WEEARQVRKLMDDSGI 581 (719)
Q Consensus 566 ~~~A~~~~~~m~~~~~ 581 (719)
+++|.+-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=20 Score=40.28 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHH
Q 047480 427 HGLGETSIAVFREMELM-GLKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA 503 (719)
..+.+.|..++.+.... ++.+... ....+.......+..+++...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 34557777777766432 2333222 22233222222222445555555443211 2333344444455577777777
Q ss_pred HHHHHhCCCC-CCHHHHHHH-HHHHHhcCChhHHHHHHHHHh
Q 047480 504 YGLIQSMPYD-ANSVIWRAL-LAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 504 ~~~~~~~~~~-p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~ 543 (719)
...|..|+.. .+..-|.-- ..+....|+.++|...++++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777421 122222222 223344677777777777764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.72 E-value=3.1 Score=44.22 Aligned_cols=152 Identities=16% Similarity=0.079 Sum_probs=94.9
Q ss_pred HhcCCHHHHHHHHh--hcC-CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHH
Q 047480 290 TREGKIERARQLFD--QMD-QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366 (719)
Q Consensus 290 ~~~g~~~~A~~~f~--~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 366 (719)
.-.|+++++.+... ++. .-...-.+.++.-+.+.|.++.|+++.+. +. .-.....+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHH
Confidence 34567777444433 111 11133467777888888888888887433 21 12334456788888877
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 047480 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446 (719)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (719)
+-. ...+...|..|.+...++|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|-
T Consensus 340 ~a~-------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 340 IAK-------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HCC-------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHH-------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 665 235677999999999999999999999999987 88888889999998777777766665541
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHH
Q 047480 447 PDGVTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 447 p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
++....++.-.|++++..+++.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHH
Confidence 3333444445577776665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=6.3 Score=37.68 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMG-LKP-DGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~ 493 (719)
|-.=+..-.+.|++++|.+.|+.+.... ..| ...+...++.++-+.+++++|....++.. .++-.|+. -|...+.+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHH
Confidence 3333444566778888888888777542 111 12356666667777777777777777777 44434443 23333434
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-----------------hhHHHH
Q 047480 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG-----------------AHYVLL 556 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l 556 (719)
++ .|..++.. -+...-...|...++.+++-.|++. +.-..+
T Consensus 116 Ls----------~~~~i~~~------------~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 116 LS----------YFFQIDDV------------TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred HH----------HhccCCcc------------ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 33 11111100 0011112344555556666666543 233478
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC
Q 047480 557 SNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 557 ~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.|.+-|.|.-|..-++.|.+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 88999999999999999999875
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.28 E-value=15 Score=37.73 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---Chh----hHHHHHHHHHh---cCChhHHHHHHHHhHhcCCCCChhHHHHH
Q 047480 282 WSSMISGYTREGKIERARQLFDQMDQR---DLV----SWTAMISGYSQ---VGGFSQALELFGKMESLGIHPDEVTMVAV 351 (719)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 351 (719)
...|+-.|-...+++...++++.+... ++. .--...-++-+ .|+.++|++++..+....-.++..|+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 335555688888888888888888763 111 11223345556 78899999999986665567777787766
Q ss_pred HHHH
Q 047480 352 LRAC 355 (719)
Q Consensus 352 l~a~ 355 (719)
.+.|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.7 Score=42.73 Aligned_cols=160 Identities=13% Similarity=-0.008 Sum_probs=118.4
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHH----HHHHhcCCHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV----DLLARDGRLD 501 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~ 501 (719)
-+|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++... ..||...|..+- -++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 478888999999999875 5667788888889999999999999999998832 246655554443 3455899999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----chhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH----GAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
+|++.-++. .+.| |.-.-.++.......|+..++.+.+.+--..-.+. .-.|...+-.+...+.++.|.++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999887 4444 44555666666788899999998877654332221 23466777777888999999999988
Q ss_pred HHhCCCCCCCcc
Q 047480 576 MDDSGIQKPPGW 587 (719)
Q Consensus 576 m~~~~~~~~~~~ 587 (719)
-.-+.+.++.+.
T Consensus 273 ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 273 EIWKRLEKDDAV 284 (491)
T ss_pred HHHHHhhccchh
Confidence 766666666654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.77 E-value=7.8 Score=43.17 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=67.1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHH
Q 047480 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 504 (719)
-+.|++++|...|-+-+.. +.|.. ++.-|..+..+.+-..+++.+.+.|+ .+..+-..|+.+|.+.++.+.-.
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHH
Confidence 3456666666655554432 23322 22333444455555555555555553 34455556666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 505 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
++++..+..--..-....+..|++.+-.++|..++.+.-. .+ ..+--.+-..|++++|.++++.|
T Consensus 452 efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he------~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 452 EFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HE------WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CH------HHHHHHHHHhcCHHHHHHHHhcC
Confidence 6666553100011133444555555555555555554322 11 11222334455556655555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.62 E-value=8.4 Score=34.07 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=58.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDANSVIWRALLAACRLHRNA 532 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~ 532 (719)
+++.-...++.+++..++..+.. +.|. ...-..-...+.+.|++.+|+.+|+++. ..|....-.+|+..|.....-
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33344566788888888887774 3444 2233334456778889999999998884 345556667777777666554
Q ss_pred hHHHHHHHHHhccCCC
Q 047480 533 KIGEIAGQKLLDLEPD 548 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~ 548 (719)
..=....+++++..|+
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 4444556666666553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.99 Score=43.16 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=68.6
Q ss_pred hHHHHHHhccCC--CCCccHHHHHHHHHHcC-----CCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccC-------
Q 047480 58 LFRSRILFSQID--NPNIFIWNTLMRGYSRS-----DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS------- 123 (719)
Q Consensus 58 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~------- 123 (719)
+-.-+..|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+. -|..+|..||+.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHH
Confidence 344566777776 57888888888877653 4455556677888888888 88888888888765432
Q ss_pred ---------CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047480 124 ---------SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158 (719)
Q Consensus 124 ---------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 158 (719)
.-.-+..++++|...|+.||..+-..|++++.+.+
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 12335566777777777777777777777666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.42 E-value=31 Score=40.40 Aligned_cols=58 Identities=7% Similarity=0.134 Sum_probs=32.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCC------CchHHHHHHHHHHHh-cCCHHHHHHHHhhcCCCC
Q 047480 252 AVINMYAKCGLMNMAERVFSTMGMS------KSTAAWSSMISGYTR-EGKIERARQLFDQMDQRD 309 (719)
Q Consensus 252 ~li~~y~~~g~~~~a~~~~~~~~~~------~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~~ 309 (719)
+.+.-+.+.+++.+|....++..+. -++..+-.-+.++.+ .++.+--..++-.+.+.|
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eD 746 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEED 746 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccch
Confidence 4455667777788888887776222 223333333444444 345555555555665433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.6 Score=36.67 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=60.1
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHhccCcH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDG--VTFVTVLCACSHGGLV 465 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~a~~~~g~~ 465 (719)
+.+..|+++.|.+.|.+.... +.....||.-..++.-.|+.++|++=+++..+. |-+.-. ..|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456678888888888776554 567778888888888888888888888877763 222111 2343333445666777
Q ss_pred HHHHHHHHHHHHcC
Q 047480 466 EEGKQFFESMLNYG 479 (719)
Q Consensus 466 ~~a~~~~~~m~~~g 479 (719)
+.|+.-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777777666555
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.2 Score=43.44 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMEL-----MGLKPDGVTFVTV 455 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 455 (719)
.++..++..+..+|+.+.+.+.++++... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677889999999999999999887765 67888999999999999999999999988875 4666666655544
Q ss_pred HHH
Q 047480 456 LCA 458 (719)
Q Consensus 456 l~a 458 (719)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.94 E-value=8.4 Score=33.36 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=64.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKPD---GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 497 (719)
.....+.|++++|.+.|+.+...- +.. ...-..++.++.+.+++++|...+++.++.........|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 334456777777777777777641 211 1355566777777778888877777777543222234455555554433
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 498 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
...+.+ +..+. ..=+..+....|...|+++++..|++.
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 322211 11111 011122345678888888888899864
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=20 Score=35.64 Aligned_cols=192 Identities=8% Similarity=-0.019 Sum_probs=81.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh----hHHHHHHHHhHhcCCCCChhHHHHH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF----SQALELFGKMESLGIHPDEVTMVAV 351 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 351 (719)
.+|..+....+..+...|..+....+..-+..+|...=..-+.++.+.|+. .+++..+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555565555543333333333344444444445555555553 3566666655332 3444444444
Q ss_pred HHHHHccCChHH--HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCC-
Q 047480 352 LRACVGLGALDF--GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG- 428 (719)
Q Consensus 352 l~a~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g- 428 (719)
+.++...+.... ...... .....-..++..+-...+.++++.++.+....+...+.. +|...-...+.++.+.+
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~-~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVE-QSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKD--PNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHhcccccccccchHHHH-HHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCC
Confidence 444444321110 011111 111111123444555555555555553322222222333 33333333334444332
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
+...+...+..+.. .+|...-...+.++.+.|+. .+...+-...
T Consensus 189 ~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L 232 (280)
T PRK09687 189 DNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKEL 232 (280)
T ss_pred CCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHH
Confidence 12344444444442 33444444455555555552 3333333333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.1 Score=39.76 Aligned_cols=92 Identities=12% Similarity=-0.069 Sum_probs=62.5
Q ss_pred chHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHH
Q 047480 40 ISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116 (719)
Q Consensus 40 ~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll 116 (719)
-+|..=-+.|.. |++++|..+|.-... -|..-|..|..++-..+++++|+..|...-..+. -|...+-...
T Consensus 39 ~iY~~Ay~~y~~----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~ag 112 (165)
T PRK15331 39 GLYAHAYEFYNQ----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHH
Confidence 345545556665 888888888876532 3455577777777778888888888877665542 3445555666
Q ss_pred HHHhccCCcHHHHHHHHHHHH
Q 047480 117 NSCARLSSFKSGCQIHCHIIK 137 (719)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~ 137 (719)
.++...|+.+.|+..|..++.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677777888888877777766
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.41 E-value=35 Score=38.38 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=42.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCchhHHHHHHHHhhcC
Q 047480 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD-LEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g 564 (719)
++..+.+..+.+++..+.+..+.. ++..|-.++..+.+.+.++.-.+...+.++ ...++--.-..+.+++++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 344555666777777777776533 677788888877777766665555555443 11111122234555555554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.52 Score=29.84 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=20.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999988844
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.80 E-value=32 Score=37.10 Aligned_cols=382 Identities=12% Similarity=0.091 Sum_probs=218.2
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHH-HHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHH
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA-MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~ 252 (719)
+...|+.+|..--.....+.+..++..++.. .|-..-|=. ...-=.+.|..+.+..+|+..++. ++.++..|..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHHH
Confidence 5567888887666666666677777777753 566554422 222235678888888999888885 7777777766
Q ss_pred HHHHHH-hcCChHHHHHHHHHc----CCC-CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh---c
Q 047480 253 VINMYA-KCGLMNMAERVFSTM----GMS-KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ---V 323 (719)
Q Consensus 253 li~~y~-~~g~~~~a~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~---~ 323 (719)
...... ..|+.+...+.|+.. |.. .+...|-..|..-..++++.....+++++.+--...++..-.-|.+ .
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 655443 456666677777766 433 3455777777777788888888888888877555555554444432 2
Q ss_pred ------CChhHHHHHHHHhHhc----CCCCChhHHHHHHHHHH-ccCChHHHH------------------------HHH
Q 047480 324 ------GGFSQALELFGKMESL----GIHPDEVTMVAVLRACV-GLGALDFGK------------------------RLH 368 (719)
Q Consensus 324 ------g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~-~~~~~~~a~------------------------~~~ 368 (719)
...+++.++-...... ...+....+..-+.--. ..+.++... ..+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 1233444333322221 00011111111111110 011111111 111
Q ss_pred HHHHHHcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHH
Q 047480 369 QQYIENVV-------FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREM 440 (719)
Q Consensus 369 ~~~~~~~~-------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 440 (719)
+ ...+.. ..++...|..-++.-.+.|+.+...-.|++..-. ..=...|-..+.-....|+.+-|-.++...
T Consensus 279 E-~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 279 E-EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred h-hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 1 011110 1123445666666667777777777777765541 111224555554444457777777666655
Q ss_pred HHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCC
Q 047480 441 ELMGL--KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAY---GLIQSM-PYD 513 (719)
Q Consensus 441 ~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~---~~~~~~-~~~ 513 (719)
.+--+ .|....+.+.+ +-..|+.+.|..+++..... + |. ...-..-+....|.|..+.+. +++... +.+
T Consensus 358 ~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 54322 22222333333 45678999999999988832 2 55 333444466777888888887 555444 222
Q ss_pred CCHHHHHHHH----H-HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 514 ANSVIWRALL----A-ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 514 p~~~~~~~ll----~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
-+..+...+. . -+...++.+.|..++.++.+..|++-..|..+++.....+.
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 2222222222 1 14556889999999999999999998889888888776653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.71 E-value=3.4 Score=39.81 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=43.2
Q ss_pred ccCcHHHHHHHHHHHHHcCCc--cChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChh
Q 047480 461 HGGLVEEGKQFFESMLNYGIK--PQMEHYGCMVDLLARDGRLDEAYGLIQSM----PYDANS-VIWRALLAACRLHRNAK 533 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~-~~~~~ll~~~~~~g~~~ 533 (719)
+.|++..|.+.|...++.... -....+-.|...+...|++++|...|..+ |..|-. ...--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555532100 01223334555566666666665555444 222211 22333333345556666
Q ss_pred HHHHHHHHHhccCCCCc
Q 047480 534 IGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~ 550 (719)
+|...++++.+-.|+.+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 66666666666666554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.99 E-value=8.3 Score=38.54 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCCC-----CCChhcHHHHHHHHHhCCC----hhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCc--
Q 047480 398 DTALSVFYKIPKN-----LKTVSLFNSIISGLAQHGL----GETSIAVFREMELMGLKPDGV--TFVTVLCACSHGGL-- 464 (719)
Q Consensus 398 ~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~-- 464 (719)
.+|.++|+.|.+. .++-..+..++.. ..++ .+.+..+|+.+.+.|+..+.. +...+|..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 3455555555543 2333344444433 2222 355677888888888776553 34444433333222
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHH
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 493 (719)
+.++.++++.+.+.|+++...+|..+.-+
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 45788889999988999998888766533
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.56 Score=29.01 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555555666777777777777777777664
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.89 Score=44.61 Aligned_cols=112 Identities=14% Similarity=0.055 Sum_probs=76.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCC
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSMP-YD-ANSVIWRALLAACRLHRN 531 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~ 531 (719)
-.+-|.+.|.+++|+..|...+. +.| +..++..-..+|.+..++..|+.=....- +. .-.-.|..-..+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34568889999999999988774 345 77888888889999999887776555431 11 112234444444456788
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 047480 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (719)
.++|.+-++.+++++|++.. |-..|++.....|+.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 99999999999999998643 33444444445554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.56 Score=31.30 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=21.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 450 (719)
+|..+...|.+.|++++|+++|++.++. .|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 4566667777777777777777777763 45543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.42 E-value=33 Score=35.35 Aligned_cols=148 Identities=8% Similarity=-0.024 Sum_probs=77.5
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC--hhH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP---DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ--MEH 486 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~ 486 (719)
....+|..++..+.+.|+++.|...+.++...+..+ +......-.......|+..+|...++......+..+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445578888888888888888888888877643221 122233334445566788888888777764222222 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGL-IQSMPYDANSVIWRALLAACRL------HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
...+...+.. ..+..... ......+.-...+..+...+.. .++.+.+...++++.++.|+....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001122222222333 3778889999999999999887777777776
Q ss_pred Hh
Q 047480 560 LA 561 (719)
Q Consensus 560 ~~ 561 (719)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 64
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.39 E-value=16 Score=36.64 Aligned_cols=125 Identities=14% Similarity=0.035 Sum_probs=66.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhccCcHHHHHHHHHHHH----HcCCccChhHHHH-
Q 047480 420 IISGLAQHGLGETSIAVFREMELMGLKP-D----GVTFVTVLCACSHGGLVEEGKQFFESML----NYGIKPQMEHYGC- 489 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~- 489 (719)
|..++.-.+.++++++.|+...+.--.. | -..+..|-+.|.+..++++|.-+..... ..++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555666777777776655421111 1 1356666667777777777766555443 2232211222222
Q ss_pred ----HHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 490 ----MVDLLARDGRLDEAYGLIQSM-------PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 490 ----li~~~~~~g~~~eA~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
|.-+|-..|++-+|.+.-++. +.+| .......+.+.|+..|+.|.|..-++.+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 223444556555555555443 2222 122344556667788888887777777654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.79 E-value=8.9 Score=35.04 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=49.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHH---HcCCccC----hhH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV--TFVTVLCACSHGGLVEEGKQFFESML---NYGIKPQ----MEH 486 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~---~~g~~p~----~~~ 486 (719)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++. +.|-.++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34555555666666666666666666554444442 44555555666666666666655554 2111111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
|..|. +...|++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 33332 23467888888777766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.30 E-value=1 Score=28.50 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhH
Q 047480 75 IWNTLMRGYSRSDSPQEALVLYTSML 100 (719)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~ 100 (719)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.99 E-value=23 Score=36.55 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP----DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
...+|..+...++++|+++.|...+.++.+..+ ..+.....-+..+...|+.++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999988652 2456777788999999999999999988887433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.89 E-value=2.6 Score=37.19 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=34.8
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...++.+.++.++..+.-+.|..+..-..-++.+...|+|.+|..+++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666666666666666666666666666666666666665543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.66 E-value=31 Score=33.14 Aligned_cols=251 Identities=14% Similarity=0.206 Sum_probs=143.5
Q ss_pred CCCCchHHHHHHHHHH-HhcCCHHHHHHHHhhcCC--C--C---hhhHHHHHHHHHhcCChhHHHHHHHHhHhc---CC-
Q 047480 274 GMSKSTAAWSSMISGY-TREGKIERARQLFDQMDQ--R--D---LVSWTAMISGYSQVGGFSQALELFGKMESL---GI- 341 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y-~~~g~~~~A~~~f~~m~~--~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~- 341 (719)
+.+||+..-|..-+.- .+...+++|..-|....+ + . ....-.+|..+.+.+++++.++.+++|..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455554444322221 234467778877777653 1 1 123445778888888888888888887531 11
Q ss_pred -CCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhcCCCC------
Q 047480 342 -HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI----FLTTAVIDMYAKCGSIDTALSVFYKIPKN------ 410 (719)
Q Consensus 342 -~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~y~k~g~~~~A~~~~~~~~~~------ 410 (719)
.-+..+.++++.-.+...+.+.-..+++..+....-..+. .+.+-|...|...|++.+-.+++.++...
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 2244567777777666666666666665322211111111 12345667777777777777777765432
Q ss_pred CCC-------hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-----ccCcHHHHHH-HHHHHH-
Q 047480 411 LKT-------VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS-----HGGLVEEGKQ-FFESML- 476 (719)
Q Consensus 411 ~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~-~~~~m~- 476 (719)
..| ...|..=|..|....+-.+-..+|++...-.-.........+++-|. +.|.+++|.. +|+...
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 011 23566678888888888888888887764322222334445666664 4677887764 444444
Q ss_pred --HcCCccChh---HHHHHHHHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047480 477 --NYGIKPQME---HYGCMVDLLARDGR----LDEAYGLIQSMPYDANSVIWRALLAACRLH 529 (719)
Q Consensus 477 --~~g~~p~~~---~~~~li~~~~~~g~----~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~ 529 (719)
+.| .|... -|-.|..++.++|- -+||.- ....|.....+.|+.+|..+
T Consensus 261 YDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 261 YDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred ccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc
Confidence 333 34433 35566777777762 122211 12345667788889888543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.43 E-value=13 Score=39.99 Aligned_cols=116 Identities=19% Similarity=0.173 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHH
Q 047480 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371 (719)
Q Consensus 292 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 371 (719)
.|+++.|..++..+++ ..-+.++..+-++|..++|+++ .+|+.-- .....+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e- 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE- 662 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh-
Confidence 4555555555544442 1223344444555555555543 2222110 1112334555555544331
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHH
Q 047480 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 436 (719)
..+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+
T Consensus 663 ------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 663 ------ANSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred ------hcchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHH
Confidence 12333445555555555555555555544433 44444444444444433333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.36 E-value=35 Score=33.50 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=62.5
Q ss_pred HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC--ChhcHHHHHHHHHhCCChhH
Q 047480 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK--TVSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 432 (719)
....++...+...+........ .+..+.-.+...|...|+.+.|..++..++.... ......+-|..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455666777776663333322 2344555677888888888888888888876411 11112222333444333333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 433 SIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 433 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
..++-++.-. .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333332 44 33344445555666677777666555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.78 E-value=3.8 Score=40.14 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++..++.++...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555566667777777777777777777777777777777777777777777776654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.20 E-value=3.1 Score=36.04 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=43.9
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|+||..+++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367788888888888888888888888888888888888888888888877653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=84.61 E-value=16 Score=38.59 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=53.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHc-CCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCH--HHHHHHHHHHHh
Q 047480 454 TVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY--DANS--VIWRALLAACRL 528 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~--~p~~--~~~~~ll~~~~~ 528 (719)
.+...+.+.|..++|.+.|++|.+. ...........|+..|...+.+.++..++.+-.. -|.. ..|++.+--.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 3444455667777777777777632 2111233455667777777777777777766531 1222 344444333333
Q ss_pred cCC---------------hhHHHHHHHHHhccCCCCc
Q 047480 529 HRN---------------AKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 529 ~g~---------------~~~a~~~~~~~~~~~p~~~ 550 (719)
.++ -..|.++..++.+.+|.-+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 332 1235577888888887654
|
The molecular function of this protein is uncertain. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.40 E-value=33 Score=31.46 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHH-----HHHHHHHhcCCHHHHH
Q 047480 432 TSIAVFREMELMGLKPDGVTFV--TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG-----CMVDLLARDGRLDEAY 504 (719)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-----~li~~~~~~g~~~eA~ 504 (719)
+.....+++....-+...-++. .+...+...|++++|..-++..... |....+. .|.......|.+|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4555555665532111112222 2334567788888888888877642 2333333 3456678899999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 505 GLIQSMPYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
..++....+. .......-.+.+...|+-++|+..|+++++.+++.
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9998764221 11112222345888899999999999999887654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.08 E-value=3.5 Score=40.23 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=65.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CC--ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-----LK--TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 450 (719)
+....+...+++.-....+++++...+-++... .+ +..+|-.+ +..-++++++.++..=++.|+-||..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccchh
Confidence 333444455555555566777777777666543 11 12223222 23346778999988888999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
|++.+++.+.+.+++.+|.++...|.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999999999888887776
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.74 E-value=33 Score=30.86 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 369 (719)
+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 444556667777777777776664221 22223445566666666555455554
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.65 E-value=19 Score=28.87 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=45.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHH
Q 047480 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348 (719)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 348 (719)
+..+...|++++|..+.+.+.-||...|-++.. -+.|..+++..-+.+|...| .|...+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 445677899999999999998899999988765 45677777777777777776 4554444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.61 E-value=1.6 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHH
Q 047480 551 AHYVLLSNMLAETYRWEEARQVRK 574 (719)
Q Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~ 574 (719)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999988765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.57 E-value=7.9 Score=34.87 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
+++|+.-+++++.++|+...++..++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4566777888888999999999999999987764
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.53 E-value=1.9 Score=26.43 Aligned_cols=29 Identities=14% Similarity=0.057 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 551 AHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.39 E-value=2.2 Score=26.26 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=18.2
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.97 E-value=7.6 Score=38.09 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.+.+-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45566678999999999999999999999999889999999999999999999888877643
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.55 E-value=71 Score=33.89 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=72.5
Q ss_pred CCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHH---HhcCCHHHHHHHHHhC--CCCCCHHH
Q 047480 445 LKPDGVTFV-TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL---ARDGRLDEAYGLIQSM--PYDANSVI 518 (719)
Q Consensus 445 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~eA~~~~~~~--~~~p~~~~ 518 (719)
..|+..|+. .++.-+-..|-..+|+..+..+.... +|+...|..+|..= ..+| +.-+..+++.| .+..|+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 467777653 45666777888889999998888542 56778888887653 2334 66777777777 23368888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc-cCCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLD-LEPD 548 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 548 (719)
|...+.--..+|..+.+-.++.++++ ++|.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 88888887788888887777777664 5554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.45 E-value=90 Score=35.03 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcc
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 192 (719)
++...|+.+.-.|++++|..+.-.|...+..-|---+.-+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44455555555556666655555555555555555555555554443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.08 E-value=2.5 Score=26.25 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=18.6
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhHHH
Q 047480 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164 (719)
Q Consensus 134 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 164 (719)
++++.. +.+...|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334443 455667777777777777777664
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=80.19 E-value=11 Score=26.34 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 628 (719)
...++-++.+.|++++|.+..+.+.+. +|...+.......+.++|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778889999999999999999863 34445555555667777877773
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=80.12 E-value=11 Score=34.50 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCc--ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-h------h
Q 047480 75 IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN--FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD-L------F 145 (719)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~------~ 145 (719)
.|..+..-|.+.|+.++|++.|.++...... |.. ..+..+++.+.-.+++..+......+...--... . .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566667777777777777777777665433 322 2445566666666677666666555544321111 1 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccC
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGS 170 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~ 170 (719)
+|..|.. ...+++..|.+.|-..
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHcc
Confidence 2222222 2346677766666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.02 E-value=80 Score=32.84 Aligned_cols=181 Identities=13% Similarity=0.176 Sum_probs=119.1
Q ss_pred cCChHHHHHHHhcCCCC--CCChhcHHHHHHHH-HhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHH
Q 047480 394 CGSIDTALSVFYKIPKN--LKTVSLFNSIISGL-AQHGLGETSIAVFREMELMGLKPDG----VTFVTVLCACSHGGLVE 466 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 466 (719)
.|+.++|.+.+..+... ++....+-.|+.+- ....++.+|+++|++..- ..|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68999999999988765 55666788887764 456689999999998875 35544 34555566678899999
Q ss_pred HHHHHHHHHH-HcCCccChhHHH-HHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047480 467 EGKQFFESML-NYGIKPQMEHYG-CMVDLLARD---GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541 (719)
Q Consensus 467 ~a~~~~~~m~-~~g~~p~~~~~~-~li~~~~~~---g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (719)
++..+-..-. ++.-.|-...|. .++..+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9877766555 444444433332 233333333 34455556666664222345788888888899999999999999
Q ss_pred HhccCCCCchhHHHHHHHHh-----hcCChHHHHHHHHHHH
Q 047480 542 LLDLEPDHGAHYVLLSNMLA-----ETYRWEEARQVRKLMD 577 (719)
Q Consensus 542 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~ 577 (719)
++.+... ...-...+..|. -....++|.+.+..+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9987643 233334444442 2345666666655543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 3e-13
Identities = 40/257 (15%), Positives = 80/257 (31%), Gaps = 10/257 (3%)
Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
A L P E + +L+ G +LD + Q+ + + G+ L A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL-AFF 134
Query: 389 DMYAKCGSIDTALSVFYKIPKNLK-----TVSLFNSIISGLAQHGLGETSIAVFREMELM 443
+ A + + T+ ++N+++ G A+ G + + V ++
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 444 GLKPDGVTFVTVL-CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
GL PD +++ L C ++ E M G+K Q ++ R L
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
+ + P + + +L R+ + P + + E
Sbjct: 255 ---VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHME 311
Query: 563 TYRWEEARQVRKLMDDS 579
V K S
Sbjct: 312 LASRVCVVSVEKPTLPS 328
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 3e-08
Identities = 40/367 (10%), Positives = 92/367 (25%), Gaps = 38/367 (10%)
Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR-------DLVSWTAMISGYSQV 323
S +S + ++ A L + L + A++ G+++
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD------FGKRLHQQYIENVVF 377
G F + + + ++ G+ PD ++ A L+ + + +F
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI---------ISGLAQHG 428
+ + + S+ ++P + T L +
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
Query: 429 LGETSIAVFREMELMGL---------------KPDGVTFVTVLCACSHGGLVEEGKQFFE 473
+ MEL + L L ++
Sbjct: 299 TLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKN 358
Query: 474 SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
+ + + Y + LL + ++Q++P S A + R
Sbjct: 359 RLEREVYEGRFSLYPFL-CLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHV 417
Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
+ + +H Y+ L AE RQ + + + W
Sbjct: 418 VQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQM 477
Query: 594 GTLHRFL 600
Sbjct: 478 ELGKLLA 484
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 3e-07
Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 7/123 (5%)
Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
SP +L S + L A + + AH
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 165 KVFE-------GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
+ L YN ++ G+A+ +++ ++D+ + PD ++ A
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 218 SAC 220
Sbjct: 208 QCM 210
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 6e-12
Identities = 83/627 (13%), Positives = 171/627 (27%), Gaps = 201/627 (32%)
Query: 141 EFD--LFIRNALIHFYSIFGYI----NNAHKVF-EGSLARDLVSYNTLINGYAQVKEPCP 193
E D + ++A+ +F + + F E L + Y
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YK-------------- 92
Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTE--LNDPRIGKQFHA----------------- 234
+L ++ QP T M+ + ND ++ +++
Sbjct: 93 --FLMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 235 -----VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
++ LG G + ++ +C M ++F W ++ +
Sbjct: 149 PAKNVLIDGVLGS-GKTWVALDVCLSYKVQC---KMDFKIF-----------WLNLKNCN 193
Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP------ 343
+ E +E ++L Q+D + ++ L K + +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVL 250
Query: 344 DEVTMVAVLRA----CVGL------GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
V A C L DF +I + V + K
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLK 309
Query: 394 CGSIDTALSVFYKIPKNLKTVS-LFNSIISGLAQHGLG-----------------ETSIA 435
+P+ + T + SII+ + GL E+S+
Sbjct: 310 YLDCRPQ-----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 436 V-----FREM-ELMGLKPDGVTFVT--VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
V +R+M + + + P + +L + + + Y
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYS-------- 415
Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR----LHRNAKIGEIAGQKLL 543
L+ + + + + I+ L LHR ++
Sbjct: 416 -----LVEKQPK-ESTISI-----PS----IYLELKVKLENEYALHR----------SIV 450
Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI-EHNGTLHRFLAS 602
D HY + K D + P Y H G H L +
Sbjct: 451 D-------HY-----------------NIPKTFDSDDLIPPYLDQYFYSHIG-HH--LKN 483
Query: 603 KKSHPQTKEIELMLKD---MTMKLKSAGY-------VPNTVQV-------VFDVDEEEKE 645
+ + ++ D + K++ + NT+Q + D D + +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 646 TVVSYHSEKLALAFGLINSRSKETIRI 672
V + + LI S+ + +RI
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 4e-07
Identities = 19/206 (9%), Positives = 63/206 (30%), Gaps = 16/206 (7%)
Query: 249 LKTAVINMYAKCGLMNMAERVF---STMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
L +M + A ++ + + K+ + + K E+ +++++
Sbjct: 66 LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125
Query: 306 DQRD----LVSWTAMISGYSQVGGFSQALELFGK-MESLGIHPDEVTMVAVLRACVGLGA 360
+ + + + + G +F K E A++
Sbjct: 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KD 184
Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL-----KTVS 415
++ + ++ +G A ID + + +F ++ + K+
Sbjct: 185 KSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242
Query: 416 LFNSIISGLAQHGLGETSIAVFREME 441
++ ++ + G + + V +
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRRF 268
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK-IGEIAG-QKLLDLEP 547
D L + + A L+ ++P + +++L+A LH+ A E+ ++ L P
Sbjct: 46 KADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANP 105
Query: 548 DHGAHYVLLSNMLAETYRWEEA 569
D+ L+ + R EEA
Sbjct: 106 DNFELACELAVQYNQVGRDEEA 127
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 719 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.43 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.16 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.15 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.92 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.89 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.75 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.7 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.65 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.53 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.52 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.52 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.4 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.4 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.39 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.38 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.37 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.25 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.19 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.15 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.11 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.11 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.07 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.07 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.05 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.03 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.03 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.97 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.97 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.96 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.91 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.9 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.86 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.78 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.75 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.67 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.67 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.65 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.62 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.55 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.4 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.34 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.27 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.26 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.72 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.59 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.53 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.29 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.25 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.1 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.2 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.02 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.94 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.9 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.77 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.78 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.23 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.38 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.95 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.44 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.36 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.65 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.58 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 84.73 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.52 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.45 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.92 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.74 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.41 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.37 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=389.56 Aligned_cols=484 Identities=9% Similarity=-0.046 Sum_probs=308.0
Q ss_pred HHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcH
Q 047480 47 SFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126 (719)
Q Consensus 47 ~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~ 126 (719)
..+.+ + |.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.... |+..++..++.+|.+.|+++
T Consensus 61 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~ 134 (597)
T 2xpi_A 61 NNTST--D-GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYA 134 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHH
T ss_pred ccccc--c-CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHH
Confidence 34566 7 889999999999999999999999999999999999999999999755 88899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC-------------------ChhhHHHHHHHHHc
Q 047480 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-------------------DLVSYNTLINGYAQ 187 (719)
Q Consensus 127 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~ 187 (719)
+|.++++.+... ++++.+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999987643 688999999999999999999999999964433 47899999999999
Q ss_pred CCCcchHHHHHHHHHHCCCCCChhh-HHHHHHHHhccCCcHH--HHHH-HHHHHHhhCCCCCchHHHHHHHHHHHhcCCh
Q 047480 188 VKEPCPALWLFRKMQDSCIQPDAFT-FVAMFSACTELNDPRI--GKQF-HAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263 (719)
Q Consensus 188 ~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~--a~~i-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 263 (719)
.|++++|+++|++|.+.+ |+..+ +..+...+...+..+. ...+ +..+...
T Consensus 213 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------ 266 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE------------------------ 266 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG------------------------
T ss_pred cCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc------------------------
Confidence 999999999999998753 54433 3333332222211111 0111 2222222
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC
Q 047480 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341 (719)
Q Consensus 264 ~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 341 (719)
+..+...+|+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+
T Consensus 267 ----------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 267 ----------DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp ----------GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ----------hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-
Confidence 2223334455555666666666666666666655 556666666666666666666666666666543
Q ss_pred CCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHH
Q 047480 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSI 420 (719)
Q Consensus 342 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~l 420 (719)
+.+..++..++.++...|+.++|.+++. .+.+.. +.+..+++.++.+|.++|++++|.++|+++.+. +.+..+|+.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISN-DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHH-HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHH-HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2245556666666666666666666666 333222 345556666666666666666666666655432 3455566666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 500 (719)
+.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 666666666666666666666542 2345566666666666666666666666666432 23455666666666666666
Q ss_pred HHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 501 DEAYGLIQSM-------PYDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 501 ~eA~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
++|.++|+++ +..|+ ..+|..++.+|...|++++|+..++++++++|+++.+|..++.+|.+.|++++|.+
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 6666666655 23454 45666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhC
Q 047480 572 VRKLMDDS 579 (719)
Q Consensus 572 ~~~~m~~~ 579 (719)
.++++.+.
T Consensus 572 ~~~~~l~~ 579 (597)
T 2xpi_A 572 HLHESLAI 579 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.86 Aligned_cols=463 Identities=9% Similarity=-0.018 Sum_probs=362.9
Q ss_pred HHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 047480 83 YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162 (719)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 162 (719)
+...|....+...+..+.. ++...|..++..|.+.|++++|..+++.+.+. .|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL-----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccchH-----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHH
Confidence 3445555556555554431 67788999999999999999999999999865 4677899999999999999999
Q ss_pred HHHHHccC--CCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhh
Q 047480 163 AHKVFEGS--LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240 (719)
Q Consensus 163 A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 240 (719)
|..+|+++ ..++..+|+.++.+|.+.|++++|+++|+++. |+.. ...++...++. .
T Consensus 136 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-------------~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-------------D 193 (597)
T ss_dssp HHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC-------------C
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc-------------c
Confidence 99999998 45789999999999999999999999998532 2220 01111111111 1
Q ss_pred CCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCHHHHHH--H-HhhcCC----CChh
Q 047480 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKIERARQ--L-FDQMDQ----RDLV 311 (719)
Q Consensus 241 ~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~~~A~~--~-f~~m~~----~~~~ 311 (719)
.+.+.+..+++.++.+|.+.|++++|...|+++ .. +.+...+..+...+...+..+.+.. + |..+.. ....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 255667788888888888888888888888887 22 3345566666665554433322211 1 222222 2334
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 391 (719)
+|+.++..|.+.|++++|.++|++|.+. +++..++..++.++.+.|++++|.++++ .+.+.+ +.+..+++.++..|
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT-KILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHcC-cccHHHHHHHHHHH
Confidence 6777788999999999999999999876 6899999999999999999999999999 555444 45788899999999
Q ss_pred HhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 047480 392 AKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470 (719)
Q Consensus 392 ~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (719)
.+.|++++|..+|+++... +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988654 5678899999999999999999999999999842 3346799999999999999999999
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL--- 545 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 545 (719)
+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++. .+.+..+|..++..+.+.|++++|...++++++.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 999999654 4468899999999999999999999999982 2347889999999999999999999999999987
Q ss_pred ---CCCC-chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 546 ---EPDH-GAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 546 ---~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+|++ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5654 5789999999999999999999999998765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-25 Score=232.26 Aligned_cols=372 Identities=12% Similarity=0.102 Sum_probs=270.6
Q ss_pred HHHHcCCCcchHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcC
Q 047480 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAF-TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261 (719)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g 261 (719)
..+.+.|++++|++.+..+.+. .|+.. .+..+...+...|+++.+...+..+.+. .|.+..++..+...|.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCC
Confidence 3445556666666666665543 23332 3333344455566666666666666654 4555666666666666666
Q ss_pred ChHHHHHHHHHc-CCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 047480 262 LMNMAERVFSTM-GMSK-STAAWSSMISGYTREGKIERARQLFDQMDQ--R-DLVSWTAMISGYSQVGGFSQALELFGKM 336 (719)
Q Consensus 262 ~~~~a~~~~~~~-~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (719)
++++|...++++ ...| +...+..+...|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666665 3333 445677788888888888888888877653 3 3445667777777788888888888888
Q ss_pred HhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChh
Q 047480 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVS 415 (719)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~ 415 (719)
.+.. +.+..++..+...+...|++++|...++ .+.+.. +.+...+..+...+...|++++|...|++.... +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFE-KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 7652 2345677777778888888888888887 444433 345667777888888888888888888776544 45677
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 494 (719)
+|..+...|...|++++|++.|+++.+. .|+ ..++..+..++.+.|++++|.+.|+++.+.. +.+...+..+..++
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 8888888899999999999999988874 454 4578888888888999999999999888643 45578888888999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 495 ARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++.+|..++.++...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998887 3444 567888888888899999999999999999999988888888888877653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=252.86 Aligned_cols=200 Identities=11% Similarity=0.104 Sum_probs=171.0
Q ss_pred HHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC---------hH
Q 047480 297 RARQLFDQMDQR-----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA---------LD 362 (719)
Q Consensus 297 ~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~ 362 (719)
.+..+++.+.++ ....++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555442 2345788899999999999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHH
Q 047480 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREM 440 (719)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 440 (719)
.|.++|+ .|...|+.||..+|++||++|++.|++++|.++|++|... .||..+||++|.+|++.|+.++|.++|++|
T Consensus 88 ~A~~lf~-~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFK-QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999 7888899999999999999999999999999999998765 689999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc
Q 047480 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497 (719)
Q Consensus 441 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 497 (719)
.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..+|+.+++.|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-24 Score=226.85 Aligned_cols=352 Identities=13% Similarity=0.119 Sum_probs=308.5
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCH
Q 047480 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKI 295 (719)
Q Consensus 218 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~ 295 (719)
..+.+.|+++.|.+.+..+.+. .|.+...+..+...+...|+.++|...++.. ..+.+..+|..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 4456789999999999999887 5677788889999999999999999999887 4566788999999999999999
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHHHHHHHHHH
Q 047480 296 ERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD-EVTMVAVLRACVGLGALDFGKRLHQQY 371 (719)
Q Consensus 296 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~ 371 (719)
++|...|+++.+ .+..+|..+...+.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~- 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK- 160 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH-
Confidence 999999998863 34567999999999999999999999999886 454 44566777888899999999999994
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H
Q 047480 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-G 449 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 449 (719)
+.+.. +.+..++..+...|.+.|++++|...|+++... +.+...|..+...+...|++++|+..|++..+. .|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 44433 456788999999999999999999999998765 466778999999999999999999999999874 565 5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~ 527 (719)
.++..+...+...|++++|.+.|+++.+.. +.+...|..+..+|.+.|++++|.+.++++ . .+++..+|..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 788999999999999999999999999743 234778999999999999999999999987 2 3447789999999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..|++++|...+++++++.|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-27 Score=250.43 Aligned_cols=212 Identities=12% Similarity=0.146 Sum_probs=170.1
Q ss_pred HHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC
Q 047480 91 EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170 (719)
Q Consensus 91 ~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 170 (719)
.+..+.+++.+.+..+.....++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3445566666666541223457778888888888888888888888888888888888888888877654332
Q ss_pred CCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHH
Q 047480 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250 (719)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 250 (719)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.++++.|.+.
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----------- 134 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF----------- 134 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----------
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------
Confidence 234556889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCh
Q 047480 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTAMISGYSQVGGF 326 (719)
Q Consensus 251 ~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~ 326 (719)
|+.||..+||+||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.
T Consensus 135 -----------------------g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 135 -----------------------GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp -----------------------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 8899999999999999999999999999999864 7999999999999999999
Q ss_pred hHHHHHHHHhHhcCCCCChhHHHHHHHHHHcc
Q 047480 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGL 358 (719)
Q Consensus 327 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (719)
++|.++|++|.+.|..|+..||+.++..++..
T Consensus 192 d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-22 Score=219.66 Aligned_cols=449 Identities=8% Similarity=-0.074 Sum_probs=235.8
Q ss_pred cHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047480 74 FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF 153 (719)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 153 (719)
..|......+.+.|++++|+..|+++.+.. |+..++..+..++...|+++.|.+.+..+++.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 456667777888888888888888888776 777788888888888888888888888888776 4556677777778
Q ss_pred HHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHH
Q 047480 154 YSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230 (719)
Q Consensus 154 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 230 (719)
|.+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-.......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------- 155 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ------- 155 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc-------
Confidence 8888888888877765432 233334444444333322233333333332222222222111100000000
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHh---cCCHHHHHHHHhhcCC
Q 047480 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR---EGKIERARQLFDQMDQ 307 (719)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~---~g~~~~A~~~f~~m~~ 307 (719)
...|+....... .......... .....+.+...+..+...+.. .|++++|...|+++.+
T Consensus 156 -----------~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 156 -----------ENLPSVTSMASF----FGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp ------------CCCCHHHHHHH----HTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred -----------cCCchhHHHHHH----HhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 000110000000 0000000000 000001223333333333333 5666666666655432
Q ss_pred -----------------CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHH
Q 047480 308 -----------------RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370 (719)
Q Consensus 308 -----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 370 (719)
.+..+|..+...+...|++++|+..|+++.... |+..++..+..++...|+++.|...+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~- 294 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD- 294 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH-
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH-
Confidence 123355566666666666677766666666543 225555555666666666666666666
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 047480 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449 (719)
Q Consensus 371 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 449 (719)
.+.+.. +.+..++..+...|.+.|++++|...|++.... +.+...|..+...|...|++++|+..|+++.+.. +.+.
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 333322 234455556666666666666666666654433 3445556666666666666666666666666531 2233
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CccC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQ----MEHYGCMVDLLAR---DGRLDEAYGLIQSM-PYDA-NSVIW 519 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~~-~~~p-~~~~~ 519 (719)
.++..+...+...|++++|...++.+.+.. -.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 455556666666666666666666665321 0111 2255666666666 66666666666654 1222 44555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
..+...+...|+.++|...+++++++.|+++..+..+
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 5666666666666666666666666666655544433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=214.76 Aligned_cols=426 Identities=11% Similarity=-0.039 Sum_probs=284.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 223 (719)
.+..+...|.+.|++++|...|+++.. ||..+|..+..+|.+.|++++|+..|+++.+.+ +.+...+..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 344455555566666666666655432 455556666666666666666666666655432 22334555555555556
Q ss_pred CCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc---CCCCchHHHHHH---HHHHHhcCCHHH
Q 047480 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSM---ISGYTREGKIER 297 (719)
Q Consensus 224 ~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~---~~~~~~~~~~~l---i~~y~~~g~~~~ 297 (719)
|+++.|...+..+.+. .+++......++..+.+......+.+.+..+ +..|+....... ............
T Consensus 87 g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLN---GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TCHHHHHHHHHHHHHS---SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred hhHHHHHHHHHHHHhc---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 6666666666555554 1222222233333333322222222222111 111111000000 000000111111
Q ss_pred HHHHHhhcCC---------C-ChhhHHHHHHHHHh---cCChhHHHHHHHHhHh-----cCCCC--------ChhHHHHH
Q 047480 298 ARQLFDQMDQ---------R-DLVSWTAMISGYSQ---VGGFSQALELFGKMES-----LGIHP--------DEVTMVAV 351 (719)
Q Consensus 298 A~~~f~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 351 (719)
+...+..... + +...|......+.. .|++++|+..|+++.. ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112222111 1 13344444454554 8999999999999987 31122 34567778
Q ss_pred HHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCCh
Q 047480 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLG 430 (719)
Q Consensus 352 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 430 (719)
...+...|+++.|...+. .+.+.. |+..++..+...|...|++++|...|+++... +.+...|..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~-~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIK-KAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHH-HHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHH-HHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888999999999999999 444444 22888899999999999999999999987765 56778899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
++|+..|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999853 2345688889999999999999999999998642 335778899999999999999999999887
Q ss_pred ----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 511 ----PYDAN----SVIWRALLAACRL---HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 511 ----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+..|+ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3488889999999 999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 047480 580 G 580 (719)
Q Consensus 580 ~ 580 (719)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=209.84 Aligned_cols=325 Identities=14% Similarity=0.071 Sum_probs=261.1
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 047480 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMI 317 (719)
Q Consensus 243 ~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 317 (719)
.|.+...+..+...|.+.|++++|...++++ ..+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4556667777777777777777777777776 3345677888888888888888888888887754 4566788888
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCCCCCh----hHHHHH------------HHHHHccCChHHHHHHHHHHHHHcCCCCCh
Q 047480 318 SGYSQVGGFSQALELFGKMESLGIHPDE----VTMVAV------------LRACVGLGALDFGKRLHQQYIENVVFGRNI 381 (719)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (719)
..|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...+.+ +.+.. +.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~-~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK-ILEVC-VWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHC-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhC-CCCh
Confidence 8888888888888888888765 3433 344444 3447888999999999994 44433 4577
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHH----
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTV---- 455 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l---- 455 (719)
.++..+..+|.+.|++++|...|+++... +.+..+|+.+...|...|++++|+..|+++.+. .|+.. .+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 88899999999999999999999988665 578889999999999999999999999999974 56554 34333
Q ss_pred --------HHHHhccCcHHHHHHHHHHHHHcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047480 456 --------LCACSHGGLVEEGKQFFESMLNYGIKPQ-----MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWR 520 (719)
Q Consensus 456 --------l~a~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 520 (719)
...|.+.|++++|..+|+.+.+. .|+ ..++..++.++.+.|++++|++.++++ ...| +..+|.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 78899999999999999999963 344 458899999999999999999999987 3344 678999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH------------HHHhhcC-----ChHHHHHHHHH
Q 047480 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS------------NMLAETY-----RWEEARQVRKL 575 (719)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~ 575 (719)
.+..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 5566666 55566666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=213.48 Aligned_cols=432 Identities=8% Similarity=-0.035 Sum_probs=242.8
Q ss_pred ccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 73 IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
...|..+...+.+.|++++|++.|+++.+.. |.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4567888999999999999999999999877 3567788888889999999999999999999886 556778888888
Q ss_pred HHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHC------CCCCChhhHHHHHHHHhccCCc
Q 047480 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS------CIQPDAFTFVAMFSACTELNDP 226 (719)
Q Consensus 153 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~ 226 (719)
+|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+......
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----------- 169 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----------- 169 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH-----------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH-----------
Confidence 888889999998888643 223333333344555555556777777776542 11122222111
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhh
Q 047480 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKS-TAAWSSMISGYTREGKIERARQLFDQ 304 (719)
Q Consensus 227 ~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (719)
|....+.+.+...+.+. ...+. ......+...|...+
T Consensus 170 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------- 208 (537)
T 3fp2_A 170 ------------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD----------- 208 (537)
T ss_dssp ------------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH-----------
T ss_pred ------------------------------HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh-----------
Confidence 11111111111111111 11111 112222322222211
Q ss_pred cCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC--------hhHHHHHHHHHHccCChHHHHHHHHHHHHHcC
Q 047480 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD--------EVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376 (719)
Q Consensus 305 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 376 (719)
-......|++++|+.+|+++.+. .|+ ..++..+...+...|++++|...+. ...+..
T Consensus 209 ------------~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~-~~~~~~ 273 (537)
T 3fp2_A 209 ------------EGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ-ESINLH 273 (537)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC
T ss_pred ------------hhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH-HHHhcC
Confidence 00000112344444444444432 122 1123333334444455555555555 222221
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047480 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455 (719)
Q Consensus 377 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 455 (719)
|+..++..+...|...|++++|...|+++... +.+..+|..+...|...|++++|++.|++..+.. +.+..++..+
T Consensus 274 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 350 (537)
T 3fp2_A 274 --PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQL 350 (537)
T ss_dssp --CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHH
T ss_pred --CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 22444455555555555555555555554332 3445566666666666666666666666666532 1223456666
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHH
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----PYDA----NSVIWRALLAACR 527 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p----~~~~~~~ll~~~~ 527 (719)
...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++ +..+ ....+..+...+.
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 666666677777777766666432 223556666666677777777777666664 1111 1122333334455
Q ss_pred hc----------CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 528 LH----------RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 528 ~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.. |++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55 77777777777777777777777777777777777777777777777654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-20 Score=197.65 Aligned_cols=366 Identities=13% Similarity=0.037 Sum_probs=241.1
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~l 253 (719)
++..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+.+. .|.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---KMDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcHHHHHHH
Confidence 56789999999999999999999999998752 346777888888888999999999999998887 34456666777
Q ss_pred HHHHHhcCChHHHHHHHHHc-CCCCc-h---HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 047480 254 INMYAKCGLMNMAERVFSTM-GMSKS-T---AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328 (719)
Q Consensus 254 i~~y~~~g~~~~a~~~~~~~-~~~~~-~---~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 328 (719)
...|.+.|++++|...++++ ...|+ . ..+..++..+... .+..+...+...|++++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHH
Confidence 77777777777777777666 33333 2 4444444332111 11122334556666666
Q ss_pred HHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 047480 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408 (719)
Q Consensus 329 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 408 (719)
|+..|+++.+.. +.+..++..+..++...|++++|...+.+.+... +.+..++..+...|.+.|++++|...|+++.
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666542 3345556666666666666666666666333221 3455666667777777777777777776654
Q ss_pred CC-CCChhcHHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHH
Q 047480 409 KN-LKTVSLFNSI------------ISGLAQHGLGETSIAVFREMELMGLKPD-----GVTFVTVLCACSHGGLVEEGKQ 470 (719)
Q Consensus 409 ~~-~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~ 470 (719)
.. +.+...|..+ ...+...|++++|+..|+++.+. .|+ ...+..+...+.+.|++++|..
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 43 2344444444 67778888888888888888773 454 2366777778888888888888
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----C
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAA------------CRLHR-----N 531 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~ 531 (719)
.++.+.+.. +.+...|..+..+|.+.|++++|.+.++++ ...|+ ...+..+..+ |...| +
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 888877532 234677888888888888888888888876 45554 4455555422 23333 5
Q ss_pred hhHHHHHHHH-HhccCCCCch----------hHHHHHHHHhhcCChHH
Q 047480 532 AKIGEIAGQK-LLDLEPDHGA----------HYVLLSNMLAETYRWEE 568 (719)
Q Consensus 532 ~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 568 (719)
.+++.+.+++ +++..|++.. .+..+..+|...|+.+.
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 6777888886 7778887532 33445555555554433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-19 Score=195.26 Aligned_cols=438 Identities=10% Similarity=-0.000 Sum_probs=300.0
Q ss_pred chHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHH
Q 047480 40 ISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116 (719)
Q Consensus 40 ~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll 116 (719)
..+..+...|.+ . |++++|...|+++.. .+..+|..+..+|.+.|++++|++.|+++.+.. |.+..++..+.
T Consensus 26 ~~~~~~g~~~~~--~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 26 VQLKNRGNHFFT--A-KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHH--T-TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHH--h-ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 345667778888 8 999999999998743 467789999999999999999999999999877 35677888999
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC------ChhhHHHHHHHHHcCCC
Q 047480 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR------DLVSYNTLINGYAQVKE 190 (719)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~ 190 (719)
.++...|++++|...+. .+.. .|+ ..+..+..+...+....|...++.+... .....+..+..+....+
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999996 4322 222 2223344555666678888888876542 12223444555666666
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 047480 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270 (719)
Q Consensus 191 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~ 270 (719)
.+.++..+..... ..|....+...+..... ..+
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~------------------------------------~~~--------- 208 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYS------------------------------------ATD--------- 208 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHT------------------------------------CSH---------
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHH------------------------------------hhh---------
Confidence 6555544433221 11221111111111100 000
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--------hhhHHHHHHHHHhcCChhHHHHHHHHhHhcC
Q 047480 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RD--------LVSWTAMISGYSQVGGFSQALELFGKMESLG 340 (719)
Q Consensus 271 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 340 (719)
-......|++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|+++...
T Consensus 209 ---------------~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~- 272 (537)
T 3fp2_A 209 ---------------EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL- 272 (537)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---------------hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-
Confidence 0001112334444444444433 11 123555566777788888888888888775
Q ss_pred CCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHH
Q 047480 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNS 419 (719)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~ 419 (719)
.|+..++..+...+...|+++.|...+.+ +.+.. +.+..++..+...|.+.|++++|...|++.... +.+...|..
T Consensus 273 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 349 (537)
T 3fp2_A 273 -HPTPNSYIFLALTLADKENSQEFFKFFQK-AVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349 (537)
T ss_dssp -CCCHHHHHHHHHHTCCSSCCHHHHHHHHH-HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred -CCCchHHHHHHHHHHHhcCHHHHHHHHHH-HhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45567777778888888888888888884 43333 356777888888999999999999999887654 456778999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc-c----ChhHHHHHHHHH
Q 047480 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK-P----QMEHYGCMVDLL 494 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p----~~~~~~~li~~~ 494 (719)
+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.... + ....+..+...|
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998852 334568888888999999999999999998743211 1 112244556778
Q ss_pred Hhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 495 ARD----------GRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 495 ~~~----------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
.+. |++++|...++++ ...| +..+|..+...+...|+.++|...+++++++.|+++....
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 888 9999999999987 2334 6678999999999999999999999999999998765543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-17 Score=173.23 Aligned_cols=305 Identities=12% Similarity=0.053 Sum_probs=212.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 047480 246 NMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGY 320 (719)
Q Consensus 246 ~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 320 (719)
|+..+..+...+...|++++|...+++. ..+.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556677777777788888888777776 3334566777777777777777777777776643 3456677777777
Q ss_pred HhcCChhHHHHHHHHhHhcCCCC---C-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 047480 321 SQVGGFSQALELFGKMESLGIHP---D-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 396 (719)
...|++++|+..|+++.+. .| + ...+..+.... . ......+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~-----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E-----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H-----------------HHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H-----------------HHHHHHHHHHHHHccC
Confidence 7777777777777777764 33 2 22222221100 0 0112234566777788
Q ss_pred hHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 047480 397 IDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475 (719)
Q Consensus 397 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (719)
+++|...|+++... +.+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888776544 4566677778888888888888888888877642 334557777777788888888888888887
Q ss_pred HHcCCccC-hhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCChhHHH
Q 047480 476 LNYGIKPQ-MEHYG------------CMVDLLARDGRLDEAYGLIQSM-PYDAN-SV----IWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 476 ~~~g~~p~-~~~~~------------~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~----~~~~ll~~~~~~g~~~~a~ 536 (719)
.+.. |+ ...+. .+...+.+.|++++|.+.++++ ...|+ .. .|..+...+...|++++|.
T Consensus 215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7532 33 22222 2366788899999999888876 23343 22 2445666788899999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-17 Score=169.44 Aligned_cols=323 Identities=12% Similarity=0.036 Sum_probs=241.5
Q ss_pred ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-C-CCCchHHHHHHH
Q 047480 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-G-MSKSTAAWSSMI 286 (719)
Q Consensus 209 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~-~~~~~~~~~~li 286 (719)
|...+..+...+...|+++.|...+..+.+. .|.+..++..+...|...|++++|...+++. . .+.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3456777788899999999999999999987 5677889999999999999999999999998 3 344678999999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 287 SGYTREGKIERARQLFDQMDQRDL------VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
..|.+.|++++|...|++..+.+. ..|..+...+. ...+......+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 999999999999999998865332 23333311100 0112223344455555
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHH
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFRE 439 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 439 (719)
+++|...+.+.+ +.. +.+..++..+...|.+.|++++|...|+++... +.+...|..+...|...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKIL-EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555222 222 244556666777777788888888887776554 46677888888888888888888888888
Q ss_pred HHHcCCCCCHH-HHH------------HHHHHHhccCcHHHHHHHHHHHHHcCCccC-h----hHHHHHHHHHHhcCCHH
Q 047480 440 MELMGLKPDGV-TFV------------TVLCACSHGGLVEEGKQFFESMLNYGIKPQ-M----EHYGCMVDLLARDGRLD 501 (719)
Q Consensus 440 m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~ 501 (719)
..+. .|+.. .+. .+...+...|++++|...++.+.+.. |+ . ..+..+...|.+.|+++
T Consensus 214 a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 214 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHH
Confidence 8874 34432 222 23556888999999999999998533 33 2 33556788999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
+|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999887 3344 6778999999999999999999999999999999988888887776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=169.68 Aligned_cols=287 Identities=12% Similarity=0.119 Sum_probs=97.1
Q ss_pred CCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHH
Q 047480 54 CKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133 (719)
Q Consensus 54 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 133 (719)
+ |++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.+|...|++++|...+.
T Consensus 16 ~-~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 16 I-GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7 89999999999997775 8999999999999999999999652 677899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhH
Q 047480 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213 (719)
Q Consensus 134 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 213 (719)
.+.+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 46688999999999999999999988864 67779999999999999999999999976 246
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 047480 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293 (719)
Q Consensus 214 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g 293 (719)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA----------------------------------------~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA----------------------------------------NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH----------------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHc----------------------------------------CCchhHHHHHHHHHHcC
Confidence 66666666666666655555443 14455555555555555
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 047480 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373 (719)
Q Consensus 294 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 373 (719)
+++.|......+. .+......++..|.+.|++++|+.+++...... +.....|+-+.-++++- .+++..+-++.+..
T Consensus 192 ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 192 EFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS 268 (449)
T ss_dssp CHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 5555544444333 222223345555556666666666655554332 22223333333333222 12222222221222
Q ss_pred HcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 374 NVVFGR------NIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 374 ~~~~~~------~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
+.++++ +..+|..++-.|.+-++++.|....-.-
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 222222 4556777778888888888777655444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-17 Score=166.82 Aligned_cols=289 Identities=11% Similarity=0.009 Sum_probs=218.9
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHH
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 350 (719)
+.+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 3455666677777778888888888888887653 344566677778888888888888888887753 335566777
Q ss_pred HHHHHHccC-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC
Q 047480 351 VLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG 428 (719)
Q Consensus 351 ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g 428 (719)
+...+...| +.++|.+.+. ...+.. +.+...+..+...|...|++++|...|++.... +.+...|..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLS-KATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHH-HHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHH-HHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 777788888 8888888887 444433 345667788888888888888888888876654 345667778888888899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--------CccChhHHHHHHHHHHhcCCH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG--------IKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~ 500 (719)
++++|++.|++..+.. +.+..++..+...+...|++++|...++++.+.. .+.....+..+..+|.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999888742 3345678888888888999999999988887421 123356888889999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH-hhcCCh
Q 047480 501 DEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML-AETYRW 566 (719)
Q Consensus 501 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 566 (719)
++|.+.+++. ...| +..+|..+...+...|+.++|...++++++++|+++..+..++.++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999988876 2233 5678888888899999999999999999999999988888888888 455553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-14 Score=163.40 Aligned_cols=483 Identities=12% Similarity=0.108 Sum_probs=332.1
Q ss_pred ChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHh
Q 047480 20 SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 99 (719)
++.......+.-+..|...+.++|+|...|.- ..++++ +.+.+-+-=| ..++.-||...++..|.-.|++
T Consensus 854 rLkll~p~LE~~~~~g~~~~~~hnalakiyid--~n~npe---~fL~~n~~yd----~~~vgkyce~rDp~la~iay~~- 923 (1630)
T 1xi4_A 854 RLKLLLPWLEARIHEGCEEPATHNALAKIYID--SNNNPE---RFLRENPYYD----SRVVGKYCEKRDPHLACVAYER- 923 (1630)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc--cCCCHH---HHhhccCccc----HHHHHHHHHhcCcchHHHHhcc-
Confidence 44555555666677776668999999999997 413333 2222222111 1233444444444444444432
Q ss_pred HhCCCC-----------------------CCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCChhHHHHHHHHH
Q 047480 100 LSKGIV-----------------------SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL--EFDLFIRNALIHFY 154 (719)
Q Consensus 100 ~~~g~~-----------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y 154 (719)
|.- +-|...|..++.- +-+--+++.++.....+ ..++.--...+..|
T Consensus 924 ---g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf 995 (1630)
T 1xi4_A 924 ---GQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAF 995 (1630)
T ss_pred ---cCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence 110 1233344444421 11223344455444433 23344446667888
Q ss_pred HhcCChhHHHHHHccCCCC------ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH
Q 047480 155 SIFGYINNAHKVFEGSLAR------DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228 (719)
Q Consensus 155 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 228 (719)
...|...+|.+++++..-. +...-|.++....+. +..+..++..+... ....-+-..|...|.+++
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHH
Confidence 8889999999988875522 234566677666666 45555555555432 113335666778889999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 047480 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308 (719)
Q Consensus 229 a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 308 (719)
|.++|+..... . .++-..+...+++++|.++.++. .++.+|..+..++.+.|++++|.+.|.+. .
T Consensus 1068 Af~IYkKa~~~-------~---~A~~VLie~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA--d 1132 (1630)
T 1xi4_A 1068 AFAIFRKFDVN-------T---SAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--D 1132 (1630)
T ss_pred HHHHHHHcCCH-------H---HHHHHHHHHHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--C
Confidence 99988885321 1 11222233788899999888865 45788999999999999999999999764 6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+.. .++...+..+.
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~--------~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh--------CCCHHHHHHHH
Confidence 77788889999999999999999998877654 333334458888899888885444332 35556667799
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
+.|...|++++|...|.... .|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|++..|
T Consensus 1203 d~le~eg~YeeA~~~Y~kA~-------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNVS-------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhhh-------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999998764 5999999999999999999999876 3568888888999999998888
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChhHHHHHHHHHhc
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH--RNAKIGEIAGQKLLD 544 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~ 544 (719)
...... +..+...+..++..|.+.|.+++|+.+++.. ..+| ....|+-|...+.+. ++..++.+.|..-..
T Consensus 1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 876653 3456677889999999999999999999776 4444 344666665555544 577788888887777
Q ss_pred cCC-----CCchhHHHHHHHHhhcCChHHHHH
Q 047480 545 LEP-----DHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 545 ~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
+.| .+...|.-+...|.+.|.|+.|..
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 766 667789999999999999999985
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-16 Score=168.32 Aligned_cols=211 Identities=7% Similarity=-0.014 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHhcCCC-C-CCChhcHHHHHHHHHh
Q 047480 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAK-------CGSID-------TALSVFYKIPK-N-LKTVSLFNSIISGLAQ 426 (719)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~~~~~~~-~-~~~~~~~~~li~~~~~ 426 (719)
.+..++++.+... +.+..+|..++..+.+ .|+++ +|..+|++... . +.+...|..++..+.+
T Consensus 256 ~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4555666333332 3456666666666664 57766 77888877664 2 4567778888888888
Q ss_pred CCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHH-HHhcCCHHH
Q 047480 427 HGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDL-LARDGRLDE 502 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-~~~~g~~~e 502 (719)
.|++++|..+|+++.+ ..|+. ..|...+..+.+.|++++|+++|+...+. .|. ...|.....+ +...|+.++
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence 8888888888888777 35543 36777777777777888888888877753 222 2223222222 335778888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch----hHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 503 AYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA----HYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 503 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
|.++|++. ...| +...|..++......|+.++|..+++++++..|.++. .|...+......|+.+.+..+.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887765 2223 5667777777777778888888888888877665554 5666677777778888888777777
Q ss_pred HhC
Q 047480 577 DDS 579 (719)
Q Consensus 577 ~~~ 579 (719)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-16 Score=161.06 Aligned_cols=267 Identities=12% Similarity=0.010 Sum_probs=229.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHH
Q 047480 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387 (719)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 387 (719)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|+.++|...+.+.+. .. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVD-LY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-hC-cCCHHHHHHH
Confidence 466677888899999999999999999998764 34556677788888999999999999994444 33 4567788899
Q ss_pred HHHHHhcC-ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 047480 388 IDMYAKCG-SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465 (719)
Q Consensus 388 i~~y~k~g-~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (719)
...|...| ++++|...|++.... +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 999999999987765 5677889999999999999999999999999853 23456777788899999999
Q ss_pred HHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcCChhH
Q 047480 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-Y----------DANSVIWRALLAACRLHRNAKI 534 (719)
Q Consensus 466 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~----------~p~~~~~~~ll~~~~~~g~~~~ 534 (719)
++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++- . +.+..+|..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998643 3447889999999999999999999998761 0 3345789999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
|...+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-17 Score=165.64 Aligned_cols=346 Identities=15% Similarity=0.106 Sum_probs=115.8
Q ss_pred hcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHH
Q 047480 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235 (719)
Q Consensus 156 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 235 (719)
+.|++++|.++++++..++ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6789999999999997664 999999999999999999999965 36788999999999999999999998887
Q ss_pred HHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH
Q 047480 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315 (719)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~ 315 (719)
+.+. .+++.+.+.|+.+|.++|+++++..+++ .|+..+|+.+.+.|...|++++|...|..+ ..|..
T Consensus 87 ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 87 ARKK----ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp --------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT-----TCHHH
T ss_pred HHHh----CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 7765 2335556666666666666666665554 244556666666666666666666666655 35666
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 395 (719)
++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|..
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~----------------------------- 198 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM----------------------------- 198 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH-----------------------------
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH-----------------------------
Confidence 666666666666666666665 145566666666666666665533
Q ss_pred ChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHH
Q 047480 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS--HGGLVEEGKQFFE 473 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~ 473 (719)
....+.. ++.-...++..|.+.|++++|+.+++...... +-....|+.+.-+++ +.+++.+..+.|.
T Consensus 199 -------~~l~L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 199 -------CGLHIVV---HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp -------TTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred -------HHHHHHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2222221 11112234445555555555555555544321 111123333333333 2333333333332
Q ss_pred HHHHcCCcc------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 474 SMLNYGIKP------QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 474 ~m~~~g~~p------~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
. +-+++| +..+|.-++-.|...++++.|...+-+-+ |+..--..+.....+-.+.|.-.++..--++..|
T Consensus 268 ~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 268 S--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp T--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred H--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 1 223333 35678888888889999998877666543 1211122222333444555544444333333333
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.....|..++...=+...+.+++++
T Consensus 344 ---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 344 ---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp ---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 2344444444333344444444433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-16 Score=165.88 Aligned_cols=280 Identities=10% Similarity=-0.027 Sum_probs=213.5
Q ss_pred HhcCCHHHHHH-HHhhcCC---C----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCCh
Q 047480 290 TREGKIERARQ-LFDQMDQ---R----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 290 ~~~g~~~~A~~-~f~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777777 7775443 1 34567778888888888888888888888763 34566777778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHH---------------HHHHHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNS---------------IISGLA 425 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~---------------li~~~~ 425 (719)
++|...+. .+.+.. +.+..++..+...|.+.|++++|.+.|+++... +.+...+.. .+..+.
T Consensus 115 ~~A~~~~~-~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALR-RCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHH-HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 88888888 444433 356777888888888888888888888876554 233333321 133344
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPD---GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 502 (719)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999985 444 6788999999999999999999999998643 3347889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------chhHHHHHHHHhhcCChHHH
Q 047480 503 AYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH-----------GAHYVLLSNMLAETYRWEEA 569 (719)
Q Consensus 503 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 569 (719)
|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ +.+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3334 57789999999999999999999999999998887 78899999999999999999
Q ss_pred HHHHHH
Q 047480 570 RQVRKL 575 (719)
Q Consensus 570 ~~~~~~ 575 (719)
..+++.
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 988764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-14 Score=157.71 Aligned_cols=409 Identities=11% Similarity=0.038 Sum_probs=269.0
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC
Q 047480 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208 (719)
Q Consensus 132 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 208 (719)
++..++.. +.+...|..++. +.+.|++++|+.+|+++.. .+...|..++..+.+.|++++|..+|++.... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34445544 567889999998 4788999999999998654 36678999999999999999999999999875 47
Q ss_pred ChhhHHHHHHHH-hccCCcHHHHH----HHHHHHHhhCCCCCchHHHHHHHHHHHh---------cCChHHHHHHHHHcC
Q 047480 209 DAFTFVAMFSAC-TELNDPRIGKQ----FHAVVYKNLGCVGSNMLLKTAVINMYAK---------CGLMNMAERVFSTMG 274 (719)
Q Consensus 209 d~~t~~~ll~a~-~~~~~~~~a~~----i~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~a~~~~~~~~ 274 (719)
+...|...+... ...|+.+.+++ +++.+++..+..+++..+|...+....+ .|+.+.|..++++.-
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777666666433 34577776665 7777776543334567778888877665 678888888888872
Q ss_pred CCCc---hHHHHHHHHHH-------------HhcCCHHHHHHHHhh-------cC------CCC--------hhhHHHHH
Q 047480 275 MSKS---TAAWSSMISGY-------------TREGKIERARQLFDQ-------MD------QRD--------LVSWTAMI 317 (719)
Q Consensus 275 ~~~~---~~~~~~li~~y-------------~~~g~~~~A~~~f~~-------m~------~~~--------~~~~~~li 317 (719)
-.|+ ...|....... .+.++++.|..++.. +. .|+ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 2333 23444333321 123456666665554 11 111 23455554
Q ss_pred HHHHhc----CCh----hHHHHHHHHhHhcCCCCChhHHHHHHHHHHc-------cCChH-------HHHHHHHHHHHHc
Q 047480 318 SGYSQV----GGF----SQALELFGKMESLGIHPDEVTMVAVLRACVG-------LGALD-------FGKRLHQQYIENV 375 (719)
Q Consensus 318 ~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~ 375 (719)
.....+ ++. ++++.+|++..... +-+...|......+.. .|+++ .|..+++ ...+.
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~-~Al~~ 315 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE-RAIST 315 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH-HHTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH-HHHHH
Confidence 333222 122 36677777777652 3355566666666654 67776 7777777 44432
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-Ch-hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH
Q 047480 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK-TV-SLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTF 452 (719)
Q Consensus 376 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 452 (719)
-.+.+..++..++..+.+.|++++|..+|+++....| +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...+
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHH
Confidence 2244577777888888888888888888877665423 32 46777777777788888888888887764 333 2233
Q ss_pred HHHHHH-HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHH
Q 047480 453 VTVLCA-CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----PYDAN--SVIWRALLAA 525 (719)
Q Consensus 453 ~~ll~a-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~--~~~~~~ll~~ 525 (719)
...... +...|++++|..+|+..++.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 222222 235778888888888777432 223677777888888888888888888775 22232 3477777777
Q ss_pred HHhcCChhHHHHHHHHHhccCCCC
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
...+|+.+.+..+.+++.+..|++
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCchh
Confidence 777888888888888888877754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-14 Score=156.23 Aligned_cols=366 Identities=11% Similarity=-0.007 Sum_probs=254.6
Q ss_pred ChhHHHHHHHHHHh----cCChhHHHHHHccCCC-CChhhHHHHHHHHHc----CCCcchHHHHHHHHHHCCCCCChhhH
Q 047480 143 DLFIRNALIHFYSI----FGYINNAHKVFEGSLA-RDLVSYNTLINGYAQ----VKEPCPALWLFRKMQDSCIQPDAFTF 213 (719)
Q Consensus 143 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~ 213 (719)
++.....|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666666666666 6677777777765332 355566666666666 666666666666665543 33333
Q ss_pred HHHHHHHhc----cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHH
Q 047480 214 VAMFSACTE----LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289 (719)
Q Consensus 214 ~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y 289 (719)
..+-..+.. .++.+.|...+..+.+. .++..+..|...|
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------------------------~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------------------------------------GRDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------------------------------CCHHHHHHHHHHH
Confidence 333334433 44555555555554443 2455566666666
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc---
Q 047480 290 TR----EGKIERARQLFDQMDQ-RDLVSWTAMISGYSQ----VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG--- 357 (719)
Q Consensus 290 ~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--- 357 (719)
.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.| +...+..+...+..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 65 6677777777776543 455667777777776 777888888888777654 34555556666654
Q ss_pred -cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhC-----
Q 047480 358 -LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK----CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH----- 427 (719)
Q Consensus 358 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~----- 427 (719)
.++.++|..++. ...+. .+......|..+|.. .++.++|...|++..+. .+...+..+...|...
T Consensus 235 ~~~~~~~A~~~~~-~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 235 VTQDYTQSRVLFS-QSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp SCCCHHHHHHHHH-HHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBC
T ss_pred CCCCHHHHHHHHH-HHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCc
Confidence 677888888887 44443 244566667777777 78899999998887653 5666778888888877
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh----cCCH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG---LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR----DGRL 500 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~ 500 (719)
++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+.| +...+..|..+|.. .+++
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 89999999999998865 4456666666676656 7899999999998754 56788888888988 8999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCC---CchhHHHHHHHHhh
Q 047480 501 DEAYGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPD---HGAHYVLLSNMLAE 562 (719)
Q Consensus 501 ~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 562 (719)
++|.+.+++.....+...+..|...+.. .++.++|...++++.+..|+ ++.....++.++..
T Consensus 384 ~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 384 QQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999987434467788888888887 79999999999999998854 66677777766654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-13 Score=150.87 Aligned_cols=411 Identities=12% Similarity=0.100 Sum_probs=295.6
Q ss_pred HHHHHHhhccCCCCChHHHHHHhccCCC-C-----CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHH
Q 047480 43 SQLISFFALSGCKNGLFRSRILFSQIDN-P-----NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116 (719)
Q Consensus 43 ~~l~~~y~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll 116 (719)
+..+.+|.. . |.+.+|..+++++.- | +...-|.++.+..+. +..+..+..++.- .+...-+.
T Consensus 989 s~~vKaf~~--a-glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA 1056 (1630)
T 1xi4_A 989 SVTVKAFMT--A-DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPDIA 1056 (1630)
T ss_pred HHHHHHHHh--C-CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHHHH
Confidence 455666666 6 777777777777642 2 223455566555555 4445544444432 22234466
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHH
Q 047480 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196 (719)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 196 (719)
..|...|.+++|.++|+... ......+.++ -..+++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 77778888999988888752 1122223332 26788999999988764 46789999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCC
Q 047480 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276 (719)
Q Consensus 197 ~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~ 276 (719)
.|.+- -|...|.-+..+|.+.|+++++.+.+..+.+. . ++..+.+.++..|++.+++++...++. .
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~--~--~e~~Idt~LafaYAKl~rleele~fI~----~ 1192 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--A--RESYVETELIFALAKTNRLAELEEFIN----G 1192 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--c--ccccccHHHHHHHHhhcCHHHHHHHHh----C
Confidence 99663 46778888999999999999999999988876 2 343444469999999999987665543 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 356 (719)
++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45667778999999999999999999985 48999999999999999999999877 35688999999999
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC--ChhHH
Q 047480 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG--LGETS 433 (719)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g--~~~~A 433 (719)
..+++..|..... . +..+...+..++..|.+.|.+++|..+++..... +.....|+-+...|++.. +..++
T Consensus 1262 e~~Ef~LA~~cgl-~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGL-H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHH-h-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 9999888887654 1 3345566778999999999999999999887654 345567877777777653 44455
Q ss_pred HHHHHHHHHcCCCC------CHHHHHHHHHHHhccCcHHHHHHH-------------HHHHHHcCCccChhHHHHHHHHH
Q 047480 434 IAVFREMELMGLKP------DGVTFVTVLCACSHGGLVEEGKQF-------------FESMLNYGIKPQMEHYGCMVDLL 494 (719)
Q Consensus 434 ~~~~~~m~~~g~~p------~~~t~~~ll~a~~~~g~~~~a~~~-------------~~~m~~~g~~p~~~~~~~li~~~ 494 (719)
+++|..-. .++| +...|.-+...|.+.|+++.|... |...+. -..+++.|...+.-|
T Consensus 1336 lk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1336 LELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHH
Confidence 55554322 1233 345688888889999999988722 222221 134577777777777
Q ss_pred HhcC---------------CHHHHHHHHHhC
Q 047480 495 ARDG---------------RLDEAYGLIQSM 510 (719)
Q Consensus 495 ~~~g---------------~~~eA~~~~~~~ 510 (719)
...+ +.+.+.++|.+.
T Consensus 1412 l~~~P~~lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1412 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred HhhChHHHHHHHHHhhhcCChHHHHHHHHHc
Confidence 7666 777777777755
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-15 Score=161.11 Aligned_cols=376 Identities=11% Similarity=-0.025 Sum_probs=213.6
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCC
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDS-----C--IQP-DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 245 (719)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+.......
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888888888888888776431 1 111 2234555555555555555555555554432100000
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhc--CCHHHHHHHHhhcCC--C-ChhhHHHHHHH-
Q 047480 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE--GKIERARQLFDQMDQ--R-DLVSWTAMISG- 319 (719)
Q Consensus 246 ~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~m~~--~-~~~~~~~li~~- 319 (719)
. .......+++.+..++.+. +++++|...|++..+ | +...+..+...
T Consensus 130 ~---------------------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 130 P---------------------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp S---------------------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred c---------------------------cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0 0011234455444444443 346777777766543 2 33344444333
Q ss_pred --HHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc----cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047480 320 --YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393 (719)
Q Consensus 320 --~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 393 (719)
+...++.++|++.+++..+.. +.+..++..+...+.. .++.++|.+.+. ...... +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~-~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVE-EALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHH-HHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHhC-ccHHHHHHHHHHHHHH
Confidence 334566677777777766542 2233444444434333 345667777776 333322 3455666777777777
Q ss_pred cCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhC-------------------CChhHHHHHHHHHHHcCCCCC-HHHH
Q 047480 394 CGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQH-------------------GLGETSIAVFREMELMGLKPD-GVTF 452 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~-~~t~ 452 (719)
.|++++|...|++..+. |.+..+|..+...|... +..++|+..|++..+. .|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhh
Confidence 78887777777776544 34555666665554321 2356788888888764 344 4577
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCccCh--hHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQM--EHYGCMVD-LLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRL 528 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~ 528 (719)
..+...+...|++++|...|++.++....|.. ..+..+.. .+...|++++|++.+++. .+.|+...+...
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------ 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------
Confidence 88888999999999999999999865433322 12333333 345778999999999876 566765544333
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEE
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 590 (719)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 412 ---~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456678888999999999999999999999999999999999998776655566664
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-16 Score=161.05 Aligned_cols=262 Identities=11% Similarity=-0.058 Sum_probs=183.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+. .+.+.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQ-RCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhcC-CCCHHHHHHHHH
Confidence 3345555666666666666666666665542 2344555556666666666666666666 333222 234556666666
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCC----------hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKT----------VSLFNSIISGLAQHGLGETSIAVFREMELMGLK-PDGVTFVTVLC 457 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 457 (719)
.|.+.|++++|...|+++... +.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 666677777776666665432 111 223445578889999999999999999985311 15678889999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 535 (719)
.+...|++++|...|+++.+.. +.+...|..+..+|.+.|++++|++.++++ ...| +..+|..+...+...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998643 345788999999999999999999999887 3344 577899999999999999999
Q ss_pred HHHHHHHhccCCC------------CchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 536 EIAGQKLLDLEPD------------HGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 536 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998876 356789999999999999998877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-16 Score=159.77 Aligned_cols=241 Identities=10% Similarity=0.012 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChh-HHHHHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV-TMVAVLR 353 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 353 (719)
+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.. .+.....
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 174 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEE 174 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH
Confidence 444555556666666666666666665432 355567777777777777777777777777643 2221 1110000
Q ss_pred HHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CC--ChhcHHHHHHHHHhCCCh
Q 047480 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LK--TVSLFNSIISGLAQHGLG 430 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~ 430 (719)
. . .... + ......+...+ ..|++++|...|+++... +. +...|..+...|...|++
T Consensus 175 ~-------~--------~~~~----~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~ 233 (368)
T 1fch_A 175 G-------A--------GGAG----L-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233 (368)
T ss_dssp -------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH
T ss_pred H-------h--------hhhc----c-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH
Confidence 0 0 0000 0 00001112222 555666666666554433 12 355666666666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
++|+..|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|.+.++++
T Consensus 234 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 234 DKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666666531 2234466666666666666667766666666432 223556666666677777777776666654
Q ss_pred -CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 511 -PYDA------------NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 511 -~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
...| ...+|..+..++...|+.++|..++++.+
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 1111 14567777777777777777776665544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-13 Score=150.34 Aligned_cols=338 Identities=10% Similarity=0.000 Sum_probs=263.2
Q ss_pred cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCC
Q 047480 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK----CGLMNMAERVFSTMGMSKSTAAWSSMISGYTR----EGK 294 (719)
Q Consensus 223 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~----~g~ 294 (719)
.++.+.|...+..+.+. .+...+..|...|.. .++.++|...+++.--..++..+..|..+|.. .++
T Consensus 56 ~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 34444444444444433 123344445555555 55556666655555222366777788888888 789
Q ss_pred HHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc----cCChHHHH
Q 047480 295 IERARQLFDQMDQ-RDLVSWTAMISGYSQ----VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGK 365 (719)
Q Consensus 295 ~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~ 365 (719)
+++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999988765 466778888888887 789999999999998865 56777777777777 89999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh----CCChhHHHHHH
Q 047480 366 RLHQQYIENVVFGRNIFLTTAVIDMYAK----CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ----HGLGETSIAVF 437 (719)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 437 (719)
..+. ...+.+ +......+..+|.. .++.++|...|++..+. .+...+..+...|.. .++.++|++.|
T Consensus 208 ~~~~-~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 208 QWYR-KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHH-HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHH-HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 9999 555543 56677888888987 88999999999987664 567778888888887 89999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC---CHHHHHHHHHh
Q 047480 438 REMELMGLKPDGVTFVTVLCACSHG-----GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG---RLDEAYGLIQS 509 (719)
Q Consensus 438 ~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~ 509 (719)
++..+.| +...+..+...+... +++++|..+|++..+.| +...+..|..+|.+.| ++++|.+.+++
T Consensus 283 ~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 283 RKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 9998764 455666677777776 89999999999999765 4567778888888767 78999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 047480 510 MPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE----TYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 510 ~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 581 (719)
.-...+...+..|...+.. .++.++|...++++.+.. ++.++..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 357 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 357 AAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7434578889989888888 899999999999998864 57889999999998 8999999999999998764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=156.11 Aligned_cols=260 Identities=7% Similarity=-0.062 Sum_probs=175.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+. .+.+.. +.+..++..+...|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALN-HARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-cCCHHHHHHHHHHHH
Confidence 3344444444444444444444444332 1233344444444444445555544444 222221 233444455555555
Q ss_pred hcCChHHHHHHHhcCCCC-CCChhcHHHH--------------HH-HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047480 393 KCGSIDTALSVFYKIPKN-LKTVSLFNSI--------------IS-GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~-~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 456 (719)
..|++++|.+.|+++... +.+...+..+ .. .+...|++++|++.++++.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 555555555555554332 2222333332 22 3677889999999999998753 33567888889
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047480 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKI 534 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 534 (719)
..+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999998643 334778999999999999999999999886 3334 57789999999999999999
Q ss_pred HHHHHHHHhccCCC------------CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 535 GEIAGQKLLDLEPD------------HGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 535 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
|...++++++..|+ ++..+..++.+|...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999998 78899999999999999999999877543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-14 Score=144.01 Aligned_cols=266 Identities=11% Similarity=0.034 Sum_probs=184.5
Q ss_pred hcCCHHHHHHHHhhcCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHH
Q 047480 291 REGKIERARQLFDQMDQRDL----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366 (719)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 366 (719)
..|+++.|...++.....+. .....+..+|...|++++|+..++.. -+|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34555555555554443221 12233445555555555555544321 23444555555555555556666666
Q ss_pred HHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 047480 367 LHQQYIENVV-FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445 (719)
Q Consensus 367 ~~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 445 (719)
.++ .+...+ .+.+..++..+...|...|++++|.+.|++ . .+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 87 ~l~-~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 87 ELD-REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--G--DSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHH-HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--C--CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHH-HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 655 333322 233455556677888889999999999988 3 78889999999999999999999999999985
Q ss_pred CCCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047480 446 KPDGVTF---VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWR 520 (719)
Q Consensus 446 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 520 (719)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|++.++++ ...| +..+|.
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4665322 12334445569999999999999964 3556889999999999999999999999986 4445 677899
Q ss_pred HHHHHHHhcCChhH-HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 047480 521 ALLAACRLHRNAKI-GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572 (719)
Q Consensus 521 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (719)
.++..+...|+.++ +..+++++++++|+++.+ .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999998865 678999999999998754 3456666666666543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-15 Score=155.23 Aligned_cols=260 Identities=12% Similarity=0.048 Sum_probs=131.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCh
Q 047480 252 AVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGF 326 (719)
Q Consensus 252 ~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 326 (719)
.+...+.+.|++++|...++++ ..+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccH
Confidence 3333344444444444444333 1234556677777777777777777777766543 3456677777777777777
Q ss_pred hHHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 047480 327 SQALELFGKMESLGIHPDE-VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405 (719)
Q Consensus 327 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 405 (719)
++|+..|+++.+.. |+. ..+..+ .....++..+...|.+.|++++|...|+
T Consensus 150 ~~A~~~~~~al~~~--p~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 150 QDACEALKNWIKQN--PKYKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHHHHHHHHHHHHC--HHHHCC---------------------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ccchHHHhhh--------------------------ccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 77777777776542 221 111111 0001122233444445555555555554
Q ss_pred cCCCC-CC--ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc
Q 047480 406 KIPKN-LK--TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482 (719)
Q Consensus 406 ~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 482 (719)
++... +. +..+|..+...|...|++++|++.|++..+.. +.+..++..+..++...|++++|...|+++.+.. +.
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 279 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PG 279 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 44332 12 34455555555555555555555555555431 2233455555555555666666666665555421 12
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-------------NSVIWRALLAACRLHRNAKIGEIAGQK 541 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (719)
+...+..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.+..+.++
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 2455555556666666666666555554 1011 245666666666666666666655544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-17 Score=178.03 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=116.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-----LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 452 (719)
.....+||+||++|+++|++++|.++|+.|.+. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 345678999999999999999999999775421 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 453 VTVLCACSHGGL-VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 453 ~~ll~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
+++|.++++.|. .++|.++|++|.+.|+.||..+|++++....|.+-++...++..++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 5789999999999999999999999998888876655555554333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-15 Score=148.02 Aligned_cols=249 Identities=11% Similarity=0.068 Sum_probs=203.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCCCCCh--hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 317 ISGYSQVGGFSQALELFGKMESLGIHPDE--VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
|.-....|++.+|+..+++.... .|+. .....+.+++...|+++.|...++ . .-+|+......+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~-~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK-P----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC-T----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc-c----cCChhHHHHHHHHHHHcCC
Confidence 34456789999999999876543 4443 345667889999999999987665 2 2356777888899999999
Q ss_pred CChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
|+.++|.+.++++... +.+...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999986432 45677788888999999999999999987 45667888899999999999999999
Q ss_pred HHHHHHcCCccChhH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 472 FESMLNYGIKPQMEH---YGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
|+.+.+.. |+... ...++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++++
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999643 55321 223445555669999999999998 234578899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHH-HHHHHHHHHhCC
Q 047480 547 PDHGAHYVLLSNMLAETYRWEE-ARQVRKLMDDSG 580 (719)
Q Consensus 547 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 580 (719)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 568988888654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=157.46 Aligned_cols=268 Identities=9% Similarity=-0.033 Sum_probs=143.4
Q ss_pred cCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHh----cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHH
Q 047480 260 CGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTR----EGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQAL 330 (719)
Q Consensus 260 ~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (719)
.++.++|...+++. .+ +.+..++..+...+.. .|++++|.+.+++... .+...|..+...|...|++++|+
T Consensus 188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHH
Confidence 34444444444443 22 2334455555444443 4567778888876542 45667888888888999999999
Q ss_pred HHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 331 ELFGKMESLGIHPD-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 331 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
..|++..+. .|+ ..++..+..++...+ ..... .. ...........+..+.|...|++...
T Consensus 268 ~~~~~al~~--~p~~~~~~~~lg~~y~~~~-----~~~~~-----~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 268 ELLKKALEY--IPNNAYLHCQIGCCYRAKV-----FQVMN-----LR-------ENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHH-----HHHHH-----C-------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHHHH-----HHhhh-----HH-------HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999888775 343 344444443332110 00000 00 00011111122335677777776544
Q ss_pred C-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHcCCccChh
Q 047480 410 N-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV--TFVTVLC-ACSHGGLVEEGKQFFESMLNYGIKPQME 485 (719)
Q Consensus 410 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 485 (719)
. +.+..+|..+...|...|++++|++.|++..+....|... .+..+.. ...+.|+.++|...|++.++ +.|+..
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~ 406 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSR 406 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCH
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccH
Confidence 3 4667789999999999999999999999998854333221 2222222 34578999999999999987 456543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
...... +.+.+++++. ...| +..+|..+...+...|+.++|+..+++++++.|.+|.+...++
T Consensus 407 ~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 407 EKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332222 2333333332 2233 6678999999999999999999999999999999887766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-14 Score=144.39 Aligned_cols=266 Identities=12% Similarity=0.038 Sum_probs=130.9
Q ss_pred HHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 047480 253 VINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFS 327 (719)
Q Consensus 253 li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 327 (719)
+...+...|++++|...++++ ..+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|+++
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHH
Confidence 333444444444444444443 1233455666666666666666666666665542 34556666666677777777
Q ss_pred HHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHH-HH-HHHhcCChHHHHHHH
Q 047480 328 QALELFGKMESLGIHPDE-VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV-ID-MYAKCGSIDTALSVF 404 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~-~y~k~g~~~~A~~~~ 404 (719)
+|++.|+++.... |+. ..+..+...+ ++......+ .. .+...|++++|...|
T Consensus 107 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 107 AALASLRAWLLSQ--PQYEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HHHHHHHHHHHTS--TTTTTC-------------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CccHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 7777777766542 222 1111110000 000000001 11 134445555555555
Q ss_pred hcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC
Q 047480 405 YKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483 (719)
Q Consensus 405 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 483 (719)
+++... +.+...|..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 239 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGY 239 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 544332 2344455555555555555555555555555431 2223455555555555566666666665555322 123
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-------------NSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|+.++|...++++++.
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445555555666666666666555554 1112 2345555555666666666666665555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=168.53 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=117.8
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhH
Q 047480 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMD-------QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347 (719)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 347 (719)
...-..+||+||++|+++|++++|.++|+.|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34455688899999999999999999987653 47889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCh-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHH
Q 047480 348 MVAVLRACVGLGAL-DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISG 423 (719)
Q Consensus 348 ~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~ 423 (719)
|+++|.++++.|.. +.|.++++ .|.+.|+.||..+|++++..+.+.+-++...+++..+... ++.+.+-+.|.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~-EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLE-QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHH-HHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHH-HHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999998888874 67888888 7888888999999998888777766666555555444432 1223344555566
Q ss_pred HHhCC
Q 047480 424 LAQHG 428 (719)
Q Consensus 424 ~~~~g 428 (719)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66555
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-14 Score=134.71 Aligned_cols=195 Identities=15% Similarity=0.034 Sum_probs=159.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHH
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTV 455 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 455 (719)
+++...+..+...+.+.|++++|...|++.... |.+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 456677788888999999999999999987665 677889999999999999999999999999985 565 4588888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 047480 456 LCACSHG-----------GLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRAL 522 (719)
Q Consensus 456 l~a~~~~-----------g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l 522 (719)
...+... |++++|...|++.++. .|+ ...+..+..+|...|++++|++.+++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8889999 9999999999999964 454 778889999999999999999999986 212678899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
...+...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-13 Score=133.34 Aligned_cols=228 Identities=11% Similarity=-0.005 Sum_probs=167.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+.+.+....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------------- 69 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR-------------- 69 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc--------------
Confidence 356666667777777777777777766654 4555555555555556666665555552111100
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (719)
..... +.....|..+...|...|++++|++.|++..+. .|+. ..+...|++++|.
T Consensus 70 ---------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 70 ---------------EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp ---------------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred ---------------ccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 00000 001467788888888888888898888888874 4553 2355667889999
Q ss_pred HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 470 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
..++.+.... +.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++..|
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 9999888642 233677888899999999999999999887 223 3677888888899999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+++..+..++.+|...|++++|.+.+++..+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-13 Score=130.85 Aligned_cols=235 Identities=11% Similarity=0.015 Sum_probs=152.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC--CCC----hhHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQVGGFSQALELFGKMESLGI--HPD----EVTMV 349 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~ 349 (719)
....+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356788999999999999999999987643 6778899999999999999999999999876421 112 34455
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCC
Q 047480 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 350 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (719)
.+...+...|++++|...+. +.....++ ...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~------------------------------------~a~~~~~~-------~~~~~~~~~ 120 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQ------------------------------------KSLTEHRT-------ADILTKLRN 120 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------------------------------------HHHHHCCC-------HHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHH------------------------------------HHHhcCch-------hHHHHHHhH
Confidence 55555555555555555555 33221122 122344455
Q ss_pred hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
+++|+..++++... .|+. ..+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++
T Consensus 121 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55666666655552 3332 355555556666666666666666666432 2235566666667777777777777666
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCchhHHHHHH
Q 047480 509 SM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLE------PDHGAHYVLLSN 558 (719)
Q Consensus 509 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 558 (719)
++ ...| +...|..+...+...|+.++|...+++++++. |++...+..+..
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 65 2223 45667777777777778888888888877777 666555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-13 Score=132.23 Aligned_cols=243 Identities=7% Similarity=-0.108 Sum_probs=183.2
Q ss_pred hcCChhHHHHHHHHhHhcCC--CC-ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 047480 322 QVGGFSQALELFGKMESLGI--HP-DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398 (719)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 398 (719)
..|++++|+..|+++.+... .| +..++..+...+...|++++|...+. ...+.. +.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS-QALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHH-HHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 34667788888887776531 11 34566677777778888888888887 333332 345677888888888999999
Q ss_pred HHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 399 TALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 399 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
+|...|++.... +.+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999988887654 457788999999999999999999999999884 56666555555666777999999999988885
Q ss_pred cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-YDAN-----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 478 ~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.. +++...+ .++..+...++.++|.+.+++.- ..|+ ..+|..+...+...|+.++|...++++++++|++..
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 32 3344444 47778888889999999998863 2332 467888888999999999999999999999998754
Q ss_pred hHHHHHHHHhhcCChHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~ 573 (719)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 66788889999987765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-13 Score=131.97 Aligned_cols=245 Identities=10% Similarity=0.004 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC--hhHHHHHHHHH
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD--EVTMVAVLRAC 355 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~ 355 (719)
.+......|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+..-.|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455566666777777776666542 2344666666666666777777766666665321111 11245555555
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHH-HHHHhCCChhHH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSII-SGLAQHGLGETS 433 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~A 433 (719)
...|++++|...+. ...+.. +.+..++..+...|.+.|++++|...|++.... +.+...|..+. ..|. .+++++|
T Consensus 85 ~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQ-AAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHH-HHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHcccHHHHHHHHH-HHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 66666666666665 222222 223345555555555555555555555554443 33344444444 2222 2344555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCC---HHHHHHHHHhC
Q 047480 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR---LDEAYGLIQSM 510 (719)
Q Consensus 434 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~eA~~~~~~~ 510 (719)
++.|++..+. .|+ +...+..+..++...|+ +++|...++++
T Consensus 162 ~~~~~~a~~~--~p~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 162 DSSFVKVLEL--KPN----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHHH--STT----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHh--Ccc----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 5555444442 222 13334444444444444 43344443333
Q ss_pred ----CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047480 511 ----PYDAN------SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 511 ----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (719)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 1356667777888899999999999999999999877777666554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=127.25 Aligned_cols=199 Identities=7% Similarity=-0.106 Sum_probs=161.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047480 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459 (719)
Q Consensus 381 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 459 (719)
...+..+...|...|++++|...|+++... +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 455667777888888888888888876543 4567788888888999999999999999888752 23556778888888
Q ss_pred hccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
...|++++|.++++++.+.+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999988876333453 667788888899999999999988876 2233 5677888888889999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..++++++..|+++..+..++.+|...|++++|.++++.+.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999888889999999999999999999999887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-12 Score=122.91 Aligned_cols=199 Identities=10% Similarity=-0.046 Sum_probs=143.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
+..++..+...|...|++++|...|+++... +.+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455566677777777777777777765543 3456677777777888888888888888777642 2345567777777
Q ss_pred Hhcc-CcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047480 459 CSHG-GLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKI 534 (719)
Q Consensus 459 ~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 534 (719)
+... |++++|...++.+.+.+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 7778 888888888887776322333 566777777888888888888887765 2233 46677777777888888888
Q ss_pred HHHHHHHHhccCC-CCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 535 GEIAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 535 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888888 77777777777888888888888888877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-12 Score=132.32 Aligned_cols=245 Identities=9% Similarity=0.004 Sum_probs=181.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC-hHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA-LDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
..|+.+...+.+.|++++|++.|++.+... +-+...|..+..++...|+ +++|...+. .+.+.. +.+..+|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~-~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYIT-AIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHH-HHHHHC-CCCHHHHHHHHH
Confidence 346666666677777777777777776642 2244556666666777775 777777777 333333 345667777888
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc-cCcHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSH-GGLVE 466 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 466 (719)
+|.+.|++++|...|+++... +.+...|..+..++...|++++|++.|+++++. .|+ ...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888877654 577888999999999999999999999999885 454 4678888888888 56656
Q ss_pred HH-----HHHHHHHHHcCCccC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 047480 467 EG-----KQFFESMLNYGIKPQ-MEHYGCMVDLLARDG--RLDEAYGLIQSMPYDA-NSVIWRALLAACRLHR------- 530 (719)
Q Consensus 467 ~a-----~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g--~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g------- 530 (719)
+| ++.|++.+.. .|+ ...|..+..+|.+.| ++++|++.++++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 5788888763 454 678888888898888 6899999988875555 4567788888877764
Q ss_pred -C-hhHHHHHHHHH-hccCCCCchhHHHHHHHHhh
Q 047480 531 -N-AKIGEIAGQKL-LDLEPDHGAHYVLLSNMLAE 562 (719)
Q Consensus 531 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 562 (719)
+ .++|+.+++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 99999988888888776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-12 Score=134.93 Aligned_cols=371 Identities=10% Similarity=-0.011 Sum_probs=183.4
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---hHHHHHHccCCCCChhhHHHHHHHHHcCC--
Q 047480 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI---NNAHKVFEGSLARDLVSYNTLINGYAQVK-- 189 (719)
Q Consensus 115 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 189 (719)
+...+.+.|++++|.+++..+.+.| ++..+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444556677777777777777665 222334455555566666 77888887766556666776766555544
Q ss_pred ---CcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcH---HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCCh
Q 047480 190 ---EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR---IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263 (719)
Q Consensus 190 ---~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 263 (719)
++++|+..|++..+.|... .+..+-..+...+..+ .+.+.+......
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------------------------ 138 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------------------------ 138 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------------------------
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------------------------
Confidence 5677888888777755322 3333333333322221 122222222222
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcC----CHHHHHHHHhhcCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHh
Q 047480 264 NMAERVFSTMGMSKSTAAWSSMISGYTREG----KIERARQLFDQMDQRDLVSWTAMISGYSQVG---GFSQALELFGKM 336 (719)
Q Consensus 264 ~~a~~~~~~~~~~~~~~~~~~li~~y~~~g----~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m 336 (719)
.++.....|...|...+ +.+.+..++......+...+..+...|...| +.++|++.|++.
T Consensus 139 -------------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 139 -------------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 22445555666666655 4455666666666666668888888888888 788888888888
Q ss_pred HhcCCCCChhHHHHHHHHHHcc----CChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 047480 337 ESLGIHPDEVTMVAVLRACVGL----GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412 (719)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~ 412 (719)
.+.| .++...+..+...|... ++.++|...+. +.. +.
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~------------------------------------~aa--~g 246 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE------------------------------------KIA--PG 246 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH------------------------------------HHG--GG
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH------------------------------------HHc--CC
Confidence 7776 33444333444444332 45555555555 333 13
Q ss_pred ChhcHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHcCCccCh
Q 047480 413 TVSLFNSIISG-L--AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG-----LVEEGKQFFESMLNYGIKPQM 484 (719)
Q Consensus 413 ~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~g~~p~~ 484 (719)
++..+..+... | ...++.++|++.|++..+.| +...+..|...|. .| ++++|.++|++.. . -+.
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~ 318 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REV 318 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCH
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCH
Confidence 44444444443 2 23455666666666655544 3344444444444 33 6666666666554 2 234
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 485 EHYGCMVDLLAR----DGRLDEAYGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 485 ~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
..+..|..+|.. ..++++|.+.|++.....+......|...|.. ..|.++|...++++.+..+.. +...+
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l 396 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLA 396 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHH
Confidence 445555555544 23666666666665322233344444444432 346777777777776655433 22333
Q ss_pred HHHH--hhcCChHHHHHHHHHHH
Q 047480 557 SNML--AETYRWEEARQVRKLMD 577 (719)
Q Consensus 557 ~~~~--~~~g~~~~A~~~~~~m~ 577 (719)
..+. ...++.++|..+.++-.
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH
Confidence 3332 22335555666655544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=127.10 Aligned_cols=199 Identities=11% Similarity=0.046 Sum_probs=146.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
....+..+...+...|++++|...|+++... +.+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455666777788888888888888877654 4567788888888889999999999999888752 3355677888888
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 888999999999999888543 345677888888899999999999988876 222 35677888888888899999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999888889999999999999999999999887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-11 Score=121.06 Aligned_cols=207 Identities=15% Similarity=0.054 Sum_probs=139.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~-------------------- 95 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYR-------------------- 95 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHH--------------------
Confidence 4567777777778888888888887776642 2234444444444444555555554444
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 467 (719)
++... +.+...|..+...|...|++++|+++|+++.+.+..|+. ..+..+...+...|++++
T Consensus 96 ----------------~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 96 ----------------KALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp ----------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------HHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 43322 245556666777777777777777777777663334543 466666777777788888
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++++.
T Consensus 160 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 160 AKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888887777533 234667777888888888888888888776 3333 5566777777788889999999999999999
Q ss_pred CCCCchhHH
Q 047480 546 EPDHGAHYV 554 (719)
Q Consensus 546 ~p~~~~~~~ 554 (719)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 998765543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-11 Score=120.03 Aligned_cols=224 Identities=12% Similarity=-0.039 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc----cCChHHHHHHHHHHHHHcCCCCChhHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGKRLHQQYIENVVFGRNIFLT 384 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (719)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~--------------- 66 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYA--------------- 66 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH---------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHH---------------
Confidence 44556666666777777777777777666522 33344444444554 555555555555
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ----HGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 460 (719)
+..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+.
T Consensus 67 ---------------------~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 67 ---------------------KACDL-NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYH 121 (273)
T ss_dssp ---------------------HHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ---------------------HHHHC-CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHH
Confidence 33321 234444445555555 555555555555555543 4445555555555
Q ss_pred c----cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 047480 461 H----GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR----DGRLDEAYGLIQSMPYDANSVIWRALLAACRL---- 528 (719)
Q Consensus 461 ~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~---- 528 (719)
. .+++++|..+|++..+.+ +...+..+..+|.+ .+++++|.+.+++.-...+...+..+...+..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 5 556666666666555433 33444555555555 56666666666554212244555555555555
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCC
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE----TYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 580 (719)
.++.++|...++++.+..| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666666666666666654 4556666666666 666666666666666544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-12 Score=135.64 Aligned_cols=345 Identities=11% Similarity=-0.014 Sum_probs=176.5
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCCh---HHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 047480 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM---NMAERVFSTMGMSKSTAAWSSMISGYTRE 292 (719)
Q Consensus 216 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~a~~~~~~~~~~~~~~~~~~li~~y~~~ 292 (719)
+...+.+.|++++|.+++..+.+. + +...+..|..+|...|+. ++|...+++.--. ++..+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC-----------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhC
Confidence 344556677777777777777666 3 223334455555556666 6677776665212 555555555544444
Q ss_pred C-----CHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChh---HHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHH
Q 047480 293 G-----KIERARQLFDQMDQ-RDLVSWTAMISGYSQVGGFS---QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363 (719)
Q Consensus 293 g-----~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 363 (719)
| +.++|...|++..+ .+...+..+...|...+..+ ++.+.+.+....| +......+...+...+.++.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 3 56667766666543 23445666666666554433 3344444444333 23334444455555553333
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhC----CChhHHHH
Q 047480 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG---SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQH----GLGETSIA 435 (719)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~----g~~~~A~~ 435 (719)
+..... ...+.-...++..+..|..+|.+.| +.++|.+.|++..+. +++...+..+...|... +++++|++
T Consensus 160 ~~~~a~-~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVE-RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHH-HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 333322 1111111233336666666777777 667777777665443 33444445555555443 56677777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC-----CHHHHHHHH
Q 047480 436 VFREMELMGLKPDGVTFVTVLCA-C--SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG-----RLDEAYGLI 507 (719)
Q Consensus 436 ~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~eA~~~~ 507 (719)
.|++.. .| +...+..+... + ...+++++|.++|++..+.| +...+..|..+|. .| ++++|.+.|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 777665 22 23334444433 2 34667777777777766554 4455555666665 44 677777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhC
Q 047480 508 QSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE----TYRWEEARQVRKLMDDS 579 (719)
Q Consensus 508 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 579 (719)
++.. ..+...+..|...|.. ..+.++|...++++.+. .++.+...|+.+|.. ..+.++|...++...+.
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 7766 4455555555554444 23667777777776653 345566677777653 34667777777776665
Q ss_pred CC
Q 047480 580 GI 581 (719)
Q Consensus 580 ~~ 581 (719)
|.
T Consensus 388 g~ 389 (452)
T 3e4b_A 388 DT 389 (452)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-12 Score=120.35 Aligned_cols=194 Identities=14% Similarity=0.065 Sum_probs=105.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHH
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 353 (719)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P---------- 70 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TP---------- 70 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC----------
Confidence 4444555555555555555555555554432 23344555555555555555555555555443 12
Q ss_pred HHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHhcCCCC-CCChhcHHHHH
Q 047480 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-----------GSIDTALSVFYKIPKN-LKTVSLFNSII 421 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~~~-~~~~~~~~~li 421 (719)
.+...+..+...|.+. |++++|...|++..+. |.+...|..+.
T Consensus 71 -------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg 125 (217)
T 2pl2_A 71 -------------------------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG 125 (217)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -------------------------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2223333333333333 6666776666665443 34566677777
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHH
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 501 (719)
..|...|++++|+..|++..+.. .+...+..+..++...|++++|...|+.+.+.. +.+...+..+..++.+.|+++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----
T ss_pred HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHH
Confidence 77777777777777777777655 556666777777777777777777777776532 223566666777777777777
Q ss_pred HHHHHHHhC
Q 047480 502 EAYGLIQSM 510 (719)
Q Consensus 502 eA~~~~~~~ 510 (719)
+|++.+++.
T Consensus 203 ~A~~~~~~~ 211 (217)
T 2pl2_A 203 EAARAAALE 211 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=125.26 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=139.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
...|..+...+...|++++|+..|+++.+.. +.+... +..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~------------------------------------~~~la~ 65 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIP------------------------------------YINFAN 65 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHH------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHH------------------------------------HHHHHH
Confidence 3455566666666666666666666666532 223333 344444
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
.|.+.|++++|...|+++... +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 555555555555555544332 2456677777888888888888888888887753 33456777778888888888888
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
..+++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|+.++|...+++++++.
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888887542 335778888889999999999999998876 223 357788888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhc
Q 047480 547 PDHGAHYVLLSNMLAET 563 (719)
Q Consensus 547 p~~~~~~~~l~~~~~~~ 563 (719)
|+++..+..+..+....
T Consensus 224 p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TTCHHHHHHHTC-----
T ss_pred cchHHHHHHHHHHHhhc
Confidence 99988877776655433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-11 Score=119.04 Aligned_cols=227 Identities=10% Similarity=-0.046 Sum_probs=164.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----cCChhHHHHHHHHhHhcCCCCChhHHHHH
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQR-DLVSWTAMISGYSQ----VGGFSQALELFGKMESLGIHPDEVTMVAV 351 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 351 (719)
.++.++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 46778889999999999999999999987654 56678889999999 999999999999998765 45555555
Q ss_pred HHHHHc----cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh-
Q 047480 352 LRACVG----LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ- 426 (719)
Q Consensus 352 l~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~- 426 (719)
...+.. .++.++|...+. ...+. .+..++..+...|..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~-~a~~~------------------------------------~~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYS-KACDL------------------------------------KYAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHH-HHHHT------------------------------------TCHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCcccCHHHHHHHHH-HHHHc------------------------------------CCccHHHHHHHHHHcC
Confidence 555555 566666666655 22222 244455555566666
Q ss_pred ---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh---
Q 047480 427 ---HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH----GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR--- 496 (719)
Q Consensus 427 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 496 (719)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+..+|.+
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCS
T ss_pred CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 677777777777777654 44455556666665 777888888887777643 35666677777877
Q ss_pred -cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCC
Q 047480 497 -DGRLDEAYGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 497 -~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.+++++|++.+++.-...+...+..+...+.. .++.++|...++++.++.|++
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 88888888888776222236667777777777 888999999999998888864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=118.04 Aligned_cols=209 Identities=12% Similarity=-0.013 Sum_probs=143.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
...|..+...+...|++++|++.|+++.+.. + .+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~------------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-P------------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-c------------------------------------cchHHHHHHHH
Confidence 3445555666666666666666666655432 1 22334444555
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhC-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 466 (719)
.|...|++++|...|+++... +.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 555556666666655554332 34566777788888888 888888888888877333454 356777777888888888
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD--ANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
+|...++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.+.
T Consensus 131 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8888888887532 234677888888888999999998888876 222 356667666667888899999999999999
Q ss_pred ccCCCCchhHHHH
Q 047480 544 DLEPDHGAHYVLL 556 (719)
Q Consensus 544 ~~~p~~~~~~~~l 556 (719)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8999887665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-12 Score=124.65 Aligned_cols=152 Identities=9% Similarity=-0.099 Sum_probs=104.8
Q ss_pred cCCCchHHHHHHHHhHhCCCC--CCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 047480 85 RSDSPQEALVLYTSMLSKGIV--SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162 (719)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~g~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 162 (719)
..|++++|++.|+++.+.... |.+..++..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456777778877777765321 0134466667777777778888888777777765 4456777777777888888888
Q ss_pred HHHHHccCC---CCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 047480 163 AHKVFEGSL---ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239 (719)
Q Consensus 163 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 239 (719)
|.+.|++.. ..+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|+.+.|...+..+...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 887777643 235677888888888888888888888888763 455544444444555567777777777666665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-11 Score=119.28 Aligned_cols=227 Identities=8% Similarity=-0.070 Sum_probs=177.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh----hHHHHHH
Q 047480 247 MLLKTAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLV----SWTAMIS 318 (719)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~----~~~~li~ 318 (719)
..........+...|++++|...+++. .. +.+..++..+...|...|++++|...|++..+ ++.. +|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344566788899999999999999998 33 34556899999999999999999999998765 2222 3889999
Q ss_pred HHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCCh
Q 047480 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI-DMYAKCGSI 397 (719)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~y~k~g~~ 397 (719)
.|...|++++|++.|++..+.. +.+..++..+...+...|++++|...+. ...+. .+.+..++..+. ..|. .+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~-~~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME-KQIRP-TTTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG-GGCCS-SCCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH-HHhhc-CCCcHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999863 3356788899999999999999999998 44443 245667777777 5554 5599
Q ss_pred HHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC---hhHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhccCcHH
Q 047480 398 DTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL---GETSIAVFREMELMG-LKPDG------VTFVTVLCACSHGGLVE 466 (719)
Q Consensus 398 ~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 466 (719)
++|.+.|+++.+. +.+...|..+...+...|+ .++|...|++..+.. -.|+. .++..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999987765 4567788888888888888 888999998887631 12331 35666667777778888
Q ss_pred HHHHHHHHHHH
Q 047480 467 EGKQFFESMLN 477 (719)
Q Consensus 467 ~a~~~~~~m~~ 477 (719)
+|.+.|+++.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888877775
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=8.9e-12 Score=129.07 Aligned_cols=228 Identities=7% Similarity=-0.030 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHhcCCCC-CCChhcHHHHHHH
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS-IDTALSVFYKIPKN-LKTVSLFNSIISG 423 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~-~~~A~~~~~~~~~~-~~~~~~~~~li~~ 423 (719)
..+..+..++...|++++|...+. .+.+.. +.+..+++.+...|.+.|+ +++|...|+++... +.+...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~-~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTR-DAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHH-HHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 456677778888999999999999 555444 4667889999999999997 99999999998765 6788899999999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh-cCCHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR-DGRLD 501 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~ 501 (719)
+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+++++.. +-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999985 554 5689999999999999999999999999743 2347889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC--------
Q 047480 502 EA-----YGLIQSM-PYDA-NSVIWRALLAACRLHR--NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY-------- 564 (719)
Q Consensus 502 eA-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 564 (719)
+| ++.+++. ...| +...|..+...+...| +.++|+..++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667665 4455 5678999888888888 689999999998 999999999999999999875
Q ss_pred -ChHHHHHHHHHH-HhC
Q 047480 565 -RWEEARQVRKLM-DDS 579 (719)
Q Consensus 565 -~~~~A~~~~~~m-~~~ 579 (719)
.+++|.++++.+ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-11 Score=112.97 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=135.0
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 490 (719)
.+...|..+...|.+.|++++|++.|++..+. .|+. .++..+...+.+.|++++|...+....... +.+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence 45667888888888888888888888888874 4544 577888888888888888888888887532 2346677777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 491 VDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888889999998888876 2333 567788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 047480 569 ARQVRKLMDDSG 580 (719)
Q Consensus 569 A~~~~~~m~~~~ 580 (719)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999887643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-09 Score=119.42 Aligned_cols=436 Identities=9% Similarity=0.031 Sum_probs=282.4
Q ss_pred CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hhH
Q 047480 86 SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY---INN 162 (719)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~ 162 (719)
.....+.+..|++.+..+ |-|..+|..++..+.+.+.++.++.+++.++.. ++.....|..-+..-.+.|. ++.
T Consensus 45 ~~~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp -CCCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred ccCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 344666777777777777 357789999999998889999999999999887 46777888888888888888 999
Q ss_pred HHHHHccCCC-----CChhhHHHHHHHHHcCCCc----ch----HHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhc----
Q 047480 163 AHKVFEGSLA-----RDLVSYNTLINGYAQVKEP----CP----ALWLFRKMQD-SCI-QPDA-FTFVAMFSACTE---- 222 (719)
Q Consensus 163 A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~pd~-~t~~~ll~a~~~---- 222 (719)
+..+|++... +++..|...+.-..+.++. ++ ..++|+..+. .|. .|+. ..|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 9999987332 6777888887766555543 22 3467766543 466 5543 455555554332
Q ss_pred -----cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 047480 223 -----LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297 (719)
Q Consensus 223 -----~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 297 (719)
.+..+.++.+|..++.. +...-..+|......-...+. ..+.+++.+ ...+++.
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e------------------~~~~y~~ 260 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQ-LTARRHIGE------------------LSAQYMN 260 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH------------------HHHHHHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCc-chHHHHHHH------------------hhHHHHH
Confidence 22355667777776643 222222333222221111111 001111111 0112223
Q ss_pred HHHHHhh-------cCC--------------C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHhHhcCC
Q 047480 298 ARQLFDQ-------MDQ--------------R--D------LVSWTAMISGYSQVG-------GFSQALELFGKMESLGI 341 (719)
Q Consensus 298 A~~~f~~-------m~~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~ 341 (719)
|...+.. +.+ | + ...|...+.---.++ ..+.+..+|++.... .
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 3333322 110 0 0 124555554433332 123456678887765 2
Q ss_pred CCChhHHHHHHHHHHccCChHHHH-HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----------
Q 047480 342 HPDEVTMVAVLRACVGLGALDFGK-RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---------- 410 (719)
Q Consensus 342 ~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---------- 410 (719)
+-+...|...+.-+...|+.+.|. .+++ ..... .+.+..++-..+....+.|+++.|.++|+++...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~-rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLK-LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHH-HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 446677777777777888888886 9998 44443 3456777888888999999999999999887542
Q ss_pred -CC------------ChhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHH
Q 047480 411 -LK------------TVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTVLCACSH-GGLVEEGKQFFESM 475 (719)
Q Consensus 411 -~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m 475 (719)
.| ....|...+....+.|+.+.|..+|.+.++. + .+....|......-.+ .++++.|..+|+..
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 02 1236888888888889999999999999875 2 1122333322222223 35689999999999
Q ss_pred HHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-YDA----NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 476 ~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
++. ++-+...+...++.....|+.+.|..+|++.- ..| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 497 Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 497 LKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 854 33456677788898889999999999999862 223 346899999988999999999999999999999875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=137.41 Aligned_cols=195 Identities=8% Similarity=-0.081 Sum_probs=163.1
Q ss_pred CChhHHHHHHHHHHhcCCh-HHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSI-DTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~-~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 456 (719)
.+...+..+...|...|++ ++|.+.|++..+. +.+...|..+...|...|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4556666677777777777 7777777765543 456778999999999999999999999998874 67877888888
Q ss_pred HHHhcc---------CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC----
Q 047480 457 CACSHG---------GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD--------GRLDEAYGLIQSM-PYDA---- 514 (719)
Q Consensus 457 ~a~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~eA~~~~~~~-~~~p---- 514 (719)
..+... |++++|.+.|+++++.. +.+...|..+..+|... |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 889998 99999999999998643 23477888999999988 9999999999887 3345
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
+...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+..+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999999999999999998765443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-12 Score=133.08 Aligned_cols=154 Identities=10% Similarity=-0.038 Sum_probs=113.4
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCccC-
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPD----GVTFVTVLCACSHGGLVEEGKQFFESMLNY----GIKPQ- 483 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~- 483 (719)
..+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..++++..+. +-.+.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 34678888888889999999998888765310 122 136777888888999999999999887732 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC------CC
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP------DH 549 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~ 549 (719)
...+..+...|.+.|++++|.+.+++.- ..++ ..++..+...+...|++++|...+++++++.+ ..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 346 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGE 346 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcch
Confidence 5577888899999999999999888761 1122 45677778888999999999999999987633 23
Q ss_pred chhHHHHHHHHhhcCChH
Q 047480 550 GAHYVLLSNMLAETYRWE 567 (719)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~ 567 (719)
..++..++.+|...|+..
T Consensus 347 ~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 347 LTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHhhHhH
Confidence 456778888888888664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-12 Score=133.63 Aligned_cols=267 Identities=10% Similarity=0.001 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHH
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ--R-DL----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 353 (719)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------
Confidence 344455566666666666666665543 2 21 245556666666666666666666654320
Q ss_pred HHHccCChHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------CCChhcHHHHHHHHH
Q 047480 354 ACVGLGALDFGKRLHQQYIENVV-FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-------LKTVSLFNSIISGLA 425 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~ 425 (719)
.+.+ .+....++..+...|...|++++|...|++.... +....+|..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 0000 0111223344444555555555555554443221 112335666666777
Q ss_pred hCCC-----------------hhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-cc
Q 047480 426 QHGL-----------------GETSIAVFREMELM----GLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KP 482 (719)
Q Consensus 426 ~~g~-----------------~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p 482 (719)
..|+ +++|++.+++..+. +-.|.. .++..+...+...|++++|..++++..+..- .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 77777777665432 111222 3666777778888888888888887763210 11
Q ss_pred C----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-
Q 047480 483 Q----MEHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH- 549 (719)
Q Consensus 483 ~----~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 549 (719)
+ ...+..+...|...|++++|.+.+++.- ...+ ..++..+...+...|++++|...+++++++.++.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 2367778888888888888888887651 1111 4567777777888899999999998888764432
Q ss_pred -----chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 550 -----GAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 550 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..++..++.+|...|++++|.+.+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 347888999999999999999999988753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-09 Score=118.33 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=99.1
Q ss_pred HHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--C-CccHHHHHHHHHHcCCC---chHHHHHHHH
Q 047480 25 LQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--P-NIFIWNTLMRGYSRSDS---PQEALVLYTS 98 (719)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~ 98 (719)
...+...+...+...-.|..++....+ . +.++.|+.+|+.+.. | ....|...+..-.+.++ ++.+..+|++
T Consensus 52 i~~lE~~l~~np~d~~~W~~yi~~~~~--~-~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKLLKHHVS--L-KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCHHHHHHHHHHHHh--c-CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 334555556655556789999999888 7 899999999988753 3 45568888888888888 9999999999
Q ss_pred hHhCCCCCCCcccHHHHHHHHhccCCc--------HHHHHHHHHHHHh-CC-CCC-hhHHHHHHHHHHh---------cC
Q 047480 99 MLSKGIVSPNNFTFPFVLNSCARLSSF--------KSGCQIHCHIIKF-GL-EFD-LFIRNALIHFYSI---------FG 158 (719)
Q Consensus 99 m~~~g~~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~Li~~y~~---------~g 158 (719)
.+.....+|+...|..-+.-..+.++. +..+++|+.++.. |. .++ ..+|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 887663226666666666554444433 3345777777654 65 443 4678777766542 34
Q ss_pred ChhHHHHHHccCCC
Q 047480 159 YINNAHKVFEGSLA 172 (719)
Q Consensus 159 ~~~~A~~~f~~~~~ 172 (719)
+++.++++|+....
T Consensus 209 ~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 57788888887543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-11 Score=125.92 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC---CCC----hhcHHHHHHHHHhCCC--------------------hhHHHH
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN---LKT----VSLFNSIISGLAQHGL--------------------GETSIA 435 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 435 (719)
++..+...|...|++++|...|++.... ..+ ..++..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4445556666666666666666554322 011 3367777778888888 888888
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-ccC----hhHHHHHHHHHHhcCCHHHHHH
Q 047480 436 VFREMELM----GLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQ----MEHYGCMVDLLARDGRLDEAYG 505 (719)
Q Consensus 436 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~eA~~ 505 (719)
.+++..+. +-.|. ..++..+...+...|++++|...+++..+..- .++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88776542 21222 23677888889999999999999999873210 111 3478889999999999999999
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHHH
Q 047480 506 LIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 506 ~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
.+++.- ..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998761 1122 4577788888999999999999999998875433 4578899999999999999999
Q ss_pred HHHHHHh
Q 047480 572 VRKLMDD 578 (719)
Q Consensus 572 ~~~~m~~ 578 (719)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=124.64 Aligned_cols=198 Identities=12% Similarity=0.027 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCC----hhcHHHHHHHHHhCCC--------------------hhHHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKT----VSLFNSIISGLAQHGL--------------------GETSI 434 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 434 (719)
.++..+...|...|++++|...|++.... ..+ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 34455566666666666666666554321 111 2356677777777777 78888
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-ccC----hhHHHHHHHHHHhcCCHHHHH
Q 047480 435 AVFREMELM----GLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQ----MEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 435 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~eA~ 504 (719)
+.+++..+. +..|. ..++..+...+...|++++|...+++..+... .++ ...+..+...|.+.|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 877776532 11222 23677777788888999999999988773210 111 337788888999999999999
Q ss_pred HHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHH
Q 047480 505 GLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAHYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 505 ~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 570 (719)
+.+++.- ..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9888751 1122 4467777788999999999999999998765432 347889999999999999999
Q ss_pred HHHHHHHhC
Q 047480 571 QVRKLMDDS 579 (719)
Q Consensus 571 ~~~~~m~~~ 579 (719)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-10 Score=113.33 Aligned_cols=220 Identities=10% Similarity=0.002 Sum_probs=132.8
Q ss_pred hHHHHHHHHhHhcCCCCChhHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 327 SQALELFGKMESLGIHPDEVTMVAVLRACV-------GLGAL-------DFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 327 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
++|+.+|++..... +-+...|......+. ..|+. ++|..+++ ...+.-.+.+..++..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~-rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE-RAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-HHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHH-HHHHHhCcccHHHHHHHHHHHH
Confidence 45666666666531 223444444444443 23554 66666666 4443211334556667777777
Q ss_pred hcCChHHHHHHHhcCCCCCC-Chh-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHH
Q 047480 393 KCGSIDTALSVFYKIPKNLK-TVS-LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGK 469 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 469 (719)
+.|++++|.++|++.....| +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776655422 333 67777777777777777777777777642 22233443332222 1257777777
Q ss_pred HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP----YDA--NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 470 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
.+|+..++.. +.+...|..+++.+.+.|++++|..+|++.- ..| ....|..++.....+|+.+.|..++++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776421 2236667777777777777777777777651 233 34567777777777777777777777777
Q ss_pred ccCCCCc
Q 047480 544 DLEPDHG 550 (719)
Q Consensus 544 ~~~p~~~ 550 (719)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=136.52 Aligned_cols=163 Identities=14% Similarity=0.176 Sum_probs=142.4
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGC 489 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 489 (719)
.+..+|+.+...|.+.|++++|++.|++.++. .|+. .++..+..++.+.|++++|.+.|++.++. .|+ ...|..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 45668899999999999999999999998884 6664 58888999999999999999999999864 455 778999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 047480 490 MVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (719)
+..+|.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999886 4455 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047480 568 EARQVRKLMDD 578 (719)
Q Consensus 568 ~A~~~~~~m~~ 578 (719)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-11 Score=109.85 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=144.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
.+..+|..+...|.+.|++++|.+.|++..+. |.++.+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45678888999999999999999999987655 5778899999999999999999999999998752 234457777778
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 535 (719)
.+...++++.+...+....+.. +.+...+..+..+|.+.|++++|++.+++. ...| +..+|..+...+...|+.++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999998643 334778889999999999999999999887 3444 677899999999999999999
Q ss_pred HHHHHHHhccCCCCc
Q 047480 536 EIAGQKLLDLEPDHG 550 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~ 550 (719)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-10 Score=122.09 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=125.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCC-CCC----hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGI-HPD----EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
....+...|++++|+..|++....-. .+| ..++..+...+...|+.+.|...+.+.+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------- 171 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------------- 171 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 44556677777777777777764210 112 23444555555556666655555552111
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCc
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPDG----VTFVTVLCACSHGGL 464 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~ 464 (719)
++...... +....+++.+...|...|++++|++.|++..+..- .++. .++..+...+...|+
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 172 ------------IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp ------------HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 11111110 01123455556666666666666666665553210 0111 255556666666666
Q ss_pred HHHHHHHHHHHHHc----CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC-
Q 047480 465 VEEGKQFFESMLNY----GIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP----Y--DAN-SVIWRALLAACRLHRN- 531 (719)
Q Consensus 465 ~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~----~--~p~-~~~~~~ll~~~~~~g~- 531 (719)
+++|.+.+++..+. +..|. ..++..+...|.+.|++++|.+.+++.- . .|. ...+..+...+...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 66666666666531 22122 4456666666667777777666666541 0 111 1123444444555566
Q ss_pred --hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 532 --AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 532 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 320 ~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 320 EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666665555 23333445677788888888888888888877764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-10 Score=119.00 Aligned_cols=227 Identities=10% Similarity=0.046 Sum_probs=158.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-CCC-----hhHHH
Q 047480 285 MISGYTREGKIERARQLFDQMDQ-----RD----LVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPD-----EVTMV 349 (719)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-----~~t~~ 349 (719)
....+...|++++|...|++..+ +| ..+|..+...|...|++++|+..+.+..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 56677888999999999988754 22 34688889999999999999999988765210 111 12333
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------CCChhcHHHHHH
Q 047480 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-------LKTVSLFNSIIS 422 (719)
Q Consensus 350 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~ 422 (719)
.+. ..|...|++++|...|++.... .....+|+.+..
T Consensus 189 ~lg------------------------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 189 LFA------------------------------------TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp HHH------------------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH------------------------------------HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344 4444444444444444433211 011236777888
Q ss_pred HHHhCCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCccChhHHHHHHHH
Q 047480 423 GLAQHGLGETSIAVFREMELM----GLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNY----GIKPQMEHYGCMVDL 493 (719)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~ 493 (719)
.|...|++++|++.|++..+. +..|+. .++..+...+...|++++|...+++..+. +-+.....+..+...
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888887762 232443 47888888899999999999999887732 111123346778888
Q ss_pred HHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 494 LARDGR---LDEAYGLIQSMPYDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 494 ~~~~g~---~~eA~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
|...|+ +++|+.++++....|+. ..+..+...+...|+.++|...+++++++..
T Consensus 313 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999998 89999999998655543 3566777789999999999999999887543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=122.53 Aligned_cols=239 Identities=10% Similarity=0.050 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhc-------CCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhH
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMESL-------GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 383 (719)
.+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+.+.+...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 35666667777777777777777776642 112223445555566666666666666665222110
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcC--CCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCCCH-HHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKI--PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM------GLKPDG-VTFVT 454 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ 454 (719)
... ...+....+|..+...|...|++++|++.|++..+. +-.|+. ..+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 000 000122334555555666666666666666655542 112222 34555
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc------CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-H
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNY------GIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP----------YDAN-S 516 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~----------~~p~-~ 516 (719)
+...+...|++++|.++++++.+. +-.|. ...+..+..+|.+.|++++|.+.++++- ..+. .
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 666666667777777766666532 11222 3456666677777777777776666541 1111 1
Q ss_pred ------HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 517 ------VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 517 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
..+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11222223344455666677777777778888888899999999999999999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-10 Score=119.34 Aligned_cols=135 Identities=10% Similarity=-0.004 Sum_probs=97.7
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCccC-
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPD----GVTFVTVLCACSHGGLVEEGKQFFESMLNY----GIKPQ- 483 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~- 483 (719)
...+..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..++++..+. +-.+.
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 34677778888888999999988888765210 112 126777778888899999999999887732 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
...+..+...|...|++++|.+.+++.- ..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5577788899999999999999888761 1112 346777888899999999999999999987764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=126.89 Aligned_cols=275 Identities=12% Similarity=0.003 Sum_probs=188.3
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCc-h----HHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CC
Q 047480 245 SNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKS-T----AAWSSMISGYTREGKIERARQLFDQMDQ---------RD 309 (719)
Q Consensus 245 ~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~-~----~~~~~li~~y~~~g~~~~A~~~f~~m~~---------~~ 309 (719)
.....+..+...+...|++++|...+++. ...|+ . .++..+...|...|++++|...|++..+ ..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667788999999999999999988 32333 2 5788999999999999999999987643 12
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhc----CCCC-ChhHHHHHHHHHHccCC----------hHHHHHHHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESL----GIHP-DEVTMVAVLRACVGLGA----------LDFGKRLHQQYIEN 374 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~----------~~~a~~~~~~~~~~ 374 (719)
..+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+ .+.+...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------- 198 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------- 198 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------
Confidence 346778888888999999999998887653 1011 12233444444444444 1111111
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-C
Q 047480 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-------KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL-K 446 (719)
Q Consensus 375 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 446 (719)
+++|.+.|++.. ..+.....|..+...|...|++++|++.|++..+... .
T Consensus 199 ----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 199 ----------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 444444333321 1012234677788888888898888888888765311 1
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----Cc-cChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CC
Q 047480 447 PD----GVTFVTVLCACSHGGLVEEGKQFFESMLNYG----IK-PQMEHYGCMVDLLARDGRLDEAYGLIQSMP----YD 513 (719)
Q Consensus 447 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~ 513 (719)
++ ..++..+...+...|++++|...+++..+.. -. .....+..+..+|.+.|++++|.+.+++.- ..
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12 1267778888899999999999998877321 11 114677888899999999999999988761 11
Q ss_pred CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 514 AN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 514 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
++ ..++..+...+...|+.++|...+++++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 12 346777788899999999999999999987764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-10 Score=113.56 Aligned_cols=215 Identities=8% Similarity=0.014 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHhcCCC-C-CCChhcHHHHHHHHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYA-------KCGSI-------DTALSVFYKIPK-N-LKTVSLFNSIISGLA 425 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~-------k~g~~-------~~A~~~~~~~~~-~-~~~~~~~~~li~~~~ 425 (719)
+.|..++++.+... +.+..+|..++..+. +.|++ ++|..+|++... . +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56667777444433 466777877777775 45886 899999999776 3 456779999999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH-hcCCHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA-RDGRLDE 502 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~e 502 (719)
+.|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|+++++.. +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998 466543 78888999999999999999999999643 233455544444322 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---CCC-CchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 503 AYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDL---EPD-HGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 503 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
|.++|++. ...| +...|..++..+...|+.++|..+++++++. .|+ ....|..++..+.+.|++++|..+++.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 2223 6789999999999999999999999999985 553 5668889999999999999999999999
Q ss_pred HhCCC
Q 047480 577 DDSGI 581 (719)
Q Consensus 577 ~~~~~ 581 (719)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=114.30 Aligned_cols=233 Identities=9% Similarity=0.008 Sum_probs=126.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCC-CCC----hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGI-HPD----EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
....+...|++++|+..|++....-. .++ ..++..+..++...|+++.|...+.+.+.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~----------------- 169 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD----------------- 169 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----------------
Confidence 34445677788888888777764310 122 22344444455555555555555442111
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCc
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM----GLKPD-GVTFVTVLCACSHGGL 464 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~ 464 (719)
++...... .....+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|+
T Consensus 170 ------------~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 170 ------------IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ------------HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 11111110 011334566666666667777776666665542 11111 1255566666777777
Q ss_pred HHHHHHHHHHHHHc----CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC--
Q 047480 465 VEEGKQFFESMLNY----GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----PY--DANS-VIWRALLAACRLHRN-- 531 (719)
Q Consensus 465 ~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~--~p~~-~~~~~ll~~~~~~g~-- 531 (719)
+++|.+.|++..+. +.+....++..+...|.+.|++++|.+.+++. +. .|.. ..+..+...+...++
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 77777777766631 21222556666777777777777777777664 11 1222 233333334555555
Q ss_pred -hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 532 -AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 532 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.++|...+++. ...|+....+..++..|...|++++|.+.+++..+
T Consensus 318 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 318 KIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666655552 22333345667788888888888888888877653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-10 Score=103.66 Aligned_cols=161 Identities=14% Similarity=-0.001 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (719)
.+..+...|...|++++|...|+++... +.+...|..+...+...|++++|.+.++++.+. .|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~-------------- 73 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--AP-------------- 73 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC--------------
Confidence 3445555566666666666666665543 334445555555555555555555555555443 12
Q ss_pred cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047480 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAKIGEIAG 539 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 539 (719)
.+...+..+...|...|++++|.+.++++ . .+.+...|..+...+...|++++|...+
T Consensus 74 --------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 74 --------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp --------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 22344444555555555555555555544 1 1224556666666677777777777777
Q ss_pred HHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777778888888888888888877777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=100.74 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHH
Q 047480 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISG 423 (719)
Q Consensus 345 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~ 423 (719)
...+..+...+...|++++|...+. .+.+.. +.+..++..+...|...|++++|...|+++... +.+...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLE-QVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHT-TTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHH-HHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3456677888899999999999998 443332 356788899999999999999999999987654 4577788888999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA 503 (719)
+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999888752 3345566667777777777777777777776432 22234444444555555554444
Q ss_pred HHHHHh
Q 047480 504 YGLIQS 509 (719)
Q Consensus 504 ~~~~~~ 509 (719)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=105.20 Aligned_cols=165 Identities=8% Similarity=-0.050 Sum_probs=86.1
Q ss_pred ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHH
Q 047480 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMV 491 (719)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li 491 (719)
|+..|......+...|++++|++.|++..+....++...+..+..++...|++++|.+.|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 334445555555555555555555555554332244444444555555555555555555555542 232 44455555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHHH
Q 047480 492 DLLARDGRLDEAYGLIQSM-PYDA-NS-------VIWRALLAACRLHRNAKIGEIAGQKLLDLEPD--HGAHYVLLSNML 560 (719)
Q Consensus 492 ~~~~~~g~~~eA~~~~~~~-~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 560 (719)
.+|.+.|++++|++.+++. ...| +. ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 5555555555555555544 1222 22 23444444455555555555555555555555 555555555555
Q ss_pred hhcCCh---------------------------HHHHHHHHHHHhC
Q 047480 561 AETYRW---------------------------EEARQVRKLMDDS 579 (719)
Q Consensus 561 ~~~g~~---------------------------~~A~~~~~~m~~~ 579 (719)
...|+. ++|...+++..+.
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555544 7777777777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-08 Score=105.40 Aligned_cols=195 Identities=14% Similarity=0.023 Sum_probs=129.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC-----C---C-ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--C--CHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKN-----L---K-TVSLFNSIISGLAQHGLGETSIAVFREMELMGLK--P--DGV 450 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 450 (719)
...+...|...|++++|...+++.... . + ....+..+...+...|++++|...+++....... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555666677777776666554321 0 1 2235566777788888888888888887753221 1 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh-hHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM-EHYG-----CMVDLLARDGRLDEAYGLIQSMP-YDAN-----SVI 518 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~-----~li~~~~~~g~~~eA~~~~~~~~-~~p~-----~~~ 518 (719)
++..+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5666777788889999999888887732111111 1121 23345778899999999988872 2221 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+..+...+...|+.++|...++++++..+.. ...+..++.+|...|++++|...++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666677888899999999998887653321 23677888999999999999999888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-09 Score=104.69 Aligned_cols=206 Identities=9% Similarity=0.006 Sum_probs=146.2
Q ss_pred CChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHH
Q 047480 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSII 421 (719)
Q Consensus 343 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li 421 (719)
.|+..+......+...|++++|...+. ...+...+++...+..+...|.+.|++++|...|++.... +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYS-EYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHH-HHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 355677777888888888999988888 4444443356666666888888888888888888887654 45666788888
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC---hhHHHHH
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKPD-G-------VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ---MEHYGCM 490 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~l 490 (719)
..|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|.+.|+++++. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 8888888888888888888874 444 3 34666667777888888888888888753 444 4567777
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 491 VDLLARDGRL--DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 491 i~~~~~~g~~--~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
..+|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777666543 2222211 12333333332 33456689999999999999999988777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-10 Score=121.36 Aligned_cols=180 Identities=8% Similarity=-0.025 Sum_probs=157.6
Q ss_pred hHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 047480 397 IDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLG-ETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 397 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
++++...++..... +.+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+...+...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45666666655444 45778899999999999999 9999999999985 455 5689999999999999999999999
Q ss_pred HHHHcCCccChhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChhH
Q 047480 474 SMLNYGIKPQMEHYGCMVDLLARD---------GRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH--------RNAKI 534 (719)
Q Consensus 474 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~~ 534 (719)
++.+. .|+...+..+..+|... |++++|++.+++. ...| +...|..+..++... |++++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 99964 57788899999999999 9999999999987 3344 678899999999888 99999
Q ss_pred HHHHHHHHhccCC---CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 535 GEIAGQKLLDLEP---DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 535 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
|+..++++++++| +++..|..++.+|...|++++|.+.+++..+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=115.73 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=141.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhc------C
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ--------R---DLVSWTAMISGYSQVGGFSQALELFGKMESL------G 340 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 340 (719)
+..++..+...|...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 455677777777777888777777776653 1 2345777888888899999999988887653 1
Q ss_pred CCC-ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC--CCCCCChhcH
Q 047480 341 IHP-DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI--PKNLKTVSLF 417 (719)
Q Consensus 341 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~--~~~~~~~~~~ 417 (719)
-.| ...++..+...+...|++++|...+.+.+... ... ...+.....|
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-----------------------------EKVLGKDHPDVAKQL 156 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----------------------------HHHHCTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-----------------------------HHhcCCCChHHHHHH
Confidence 112 23445555666666666666666665222110 000 0001233456
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCccC
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELM------GLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNY-------GIKPQ 483 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------g~~p~ 483 (719)
..+...|...|++++|+++|+++.+. +..|+. .++..+...+...|++++|.++++++.+. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 66667777777777777777776653 213332 35666777777778888888777777632 11122
Q ss_pred h-------hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 484 M-------EHYGCMVDLLARDGRLDEAYGLIQSMP-YDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 484 ~-------~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
. ..+..+...+...+.+.+|...++... ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 122222333444555556666666653 233 4467888888899999999999999999988775
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-08 Score=104.50 Aligned_cols=233 Identities=9% Similarity=0.021 Sum_probs=149.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-CCC-----hhHH
Q 047480 284 SMISGYTREGKIERARQLFDQMDQ-----RD----LVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPD-----EVTM 348 (719)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-----~~t~ 348 (719)
.....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+... .++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345566788999999999987654 22 34678888999999999999999998765210 111 2344
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCC
Q 047480 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428 (719)
Q Consensus 349 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 428 (719)
..+..++...|++++|.+.+.+.+. ++...........+++.+...|...|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~-----------------------------~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALE-----------------------------LAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-----------------------------HHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 4555555556666666555552111 11111110011235666777777777
Q ss_pred ChhHHHHHHHHHHHcC---CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---ccC-hhHHHHHHHHHHhcCC-
Q 047480 429 LGETSIAVFREMELMG---LKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGI---KPQ-MEHYGCMVDLLARDGR- 499 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g---~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~g~- 499 (719)
++++|++.|++..+.. ..|+ ..++..+...+.+.|++++|..++++..+..- .|. ...+..+...|...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 7777777777766510 1222 44677777788888888888888888773211 111 3456666677777777
Q ss_pred --HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 500 --LDEAYGLIQSMPYDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 500 --~~eA~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
+++|+..+++....|+. ..+..+...+...|+.++|...++++++.
T Consensus 317 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 317 RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888886544433 34556666788888999998888887653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-10 Score=124.52 Aligned_cols=165 Identities=12% Similarity=0.118 Sum_probs=139.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVL 456 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 456 (719)
.+...++.|...|.+.|++++|.+.|++..+. +.+...|+.+...|.+.|++++|++.|++.++. .|+. ..|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34567788888999999999999999887654 467788999999999999999999999999884 6664 5888999
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 047480 457 CACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 533 (719)
.++...|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++|++.|++. ...| +...|..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999864 455 778999999999999999999999886 4555 5678888999999999999
Q ss_pred HHHHHHHHHhccCC
Q 047480 534 IGEIAGQKLLDLEP 547 (719)
Q Consensus 534 ~a~~~~~~~~~~~p 547 (719)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=105.54 Aligned_cols=196 Identities=11% Similarity=0.121 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC---------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN---------LKTVSLFNSIISGLAQHGLGETSIAVFREMELM------GLKP 447 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 447 (719)
++..+...|...|++++|...|++.... +....+|..+...|...|++++|++.|++..+. .-.|
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3344444455555555555544443211 123446777777777777777777777777653 1123
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc------CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------
Q 047480 448 D-GVTFVTVLCACSHGGLVEEGKQFFESMLNY------GIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP-------- 511 (719)
Q Consensus 448 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~-------- 511 (719)
+ ..++..+...+...|++++|..+++++.+. +-.|+ ...+..+..+|.+.|++++|.+.++++-
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 3 246777777788888888888888877743 11222 5567778888888888888888877651
Q ss_pred --CCC-CHHHHHHHHHHHHhcCCh------hHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 512 --YDA-NSVIWRALLAACRLHRNA------KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 512 --~~p-~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
..+ ....|..+.......+.. ..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122 223344433333333322 2223333333334455567888999999999999999999998765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=100.40 Aligned_cols=220 Identities=12% Similarity=0.026 Sum_probs=131.1
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc----CCCCC-hhHHHHHHHHHHccCChHHHHHHH
Q 047480 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL----GIHPD-EVTMVAVLRACVGLGALDFGKRLH 368 (719)
Q Consensus 294 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 368 (719)
++++|...|++. ...|...|++++|++.|.+.... |-+++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367777766653 45567778888888888776542 21111 234555555555555555555555
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhC-CChhHHHHHHHHHHHcCCC-
Q 047480 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLK- 446 (719)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~- 446 (719)
.+ ..+ .+...|+...+ ..+|+.+...|... |++++|+..|++..+....
T Consensus 101 ~~-Al~---------------l~~~~g~~~~~-------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 101 EN-AIQ---------------IFTHRGQFRRG-------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp HH-HHH---------------HHHHTTCHHHH-------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HH-HHH---------------HHHHcCCHHHH-------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence 52 111 11112221111 23567777778875 8888888888877653100
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047480 447 PD----GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM------EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN 515 (719)
Q Consensus 447 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~ 515 (719)
.+ ..++..+...+...|++++|...|++..+....... ..|..+..++...|++++|...+++. ...|+
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 01 235777778888888888888888888864322221 14667777888888888888888876 34443
Q ss_pred HH------HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCchhH
Q 047480 516 SV------IWRALLAACR--LHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 516 ~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
.. .+..++.++. ..+++++|...++++.+++|.....+
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 22 2344455554 34567788888888888877654333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-06 Score=91.03 Aligned_cols=194 Identities=11% Similarity=-0.008 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCC--C--ChhH
Q 047480 283 SSMISGYTREGKIERARQLFDQMDQ-------R----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIH--P--DEVT 347 (719)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t 347 (719)
..+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444445555555555555444321 1 1123444555566666666666666665542111 1 1123
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHhcCCCCCC-C----hhcH
Q 047480 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT-----AVIDMYAKCGSIDTALSVFYKIPKNLK-T----VSLF 417 (719)
Q Consensus 348 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~y~k~g~~~~A~~~~~~~~~~~~-~----~~~~ 417 (719)
+..+...+...|++++|...+.+.............+. ..+..+...|++++|...+++.....+ + ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44455555666666666666653222111111101111 233446677888888877777655311 1 1134
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELM----GLKPDGV-TFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
..+...+...|++++|...+++.... |..++.. ++..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55566677777777777777665432 1111111 33334444555556666655555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-08 Score=95.79 Aligned_cols=206 Identities=9% Similarity=-0.017 Sum_probs=132.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCC---hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC-HHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKT---VSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPD-GVTFV 453 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 453 (719)
+...+-.+...+.+.|++++|...|+++... +.+ ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444455566667777777777777776554 223 45666677777777777777777777776421 112 22455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047480 454 TVLCACSH--------GGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524 (719)
Q Consensus 454 ~ll~a~~~--------~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~ 524 (719)
.+..++.. .|++++|...|+++++. .|+ ......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555656 77777777777777642 233 22222221111111111 112455667
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHhhc----------CChHHHHHHHHHHHhCCCCCCCcccEEE
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHG---AHYVLLSNMLAET----------YRWEEARQVRKLMDDSGIQKPPGWSYIE 591 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 591 (719)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 78899999999999999999999854 4788999999877 999999999999987532
Q ss_pred ECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 047480 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625 (719)
Q Consensus 592 ~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 625 (719)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 244556666677777666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-08 Score=99.38 Aligned_cols=165 Identities=10% Similarity=0.054 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc------CCC
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKN---------LKTVSLFNSIISGLAQHGLGETSIAVFREMELM------GLK 446 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 446 (719)
.++..+...|...|++++|...|++.... +....+|..+...|...|++++|++.|++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445555555555555555555543321 123456777888888888888888888887764 113
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCccC-hhHHHHHHHHHHhcC------CHHHHHHHHHhCC
Q 047480 447 PD-GVTFVTVLCACSHGGLVEEGKQFFESMLNY-------GIKPQ-MEHYGCMVDLLARDG------RLDEAYGLIQSMP 511 (719)
Q Consensus 447 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------g~~p~-~~~~~~li~~~~~~g------~~~eA~~~~~~~~ 511 (719)
|+ ..++..+...+...|++++|..+++++.+. ...+. ...+..+...+...+ .+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 33 246777888888889999999988887742 11222 333444444433322 3445555555553
Q ss_pred C-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 512 Y-DA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 512 ~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
. .| ...++..+...+...|++++|...++++++..
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2 23 34567788888999999999999999988753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=92.57 Aligned_cols=177 Identities=8% Similarity=-0.061 Sum_probs=118.7
Q ss_pred HHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 400 ALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 400 A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
|...|++.... .++..++..+..++...|++++|++++.+.+..+-.++. ..+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55666655543 245555567777788888888888888877655432333 4666777778888888888888888875
Q ss_pred cCCcc-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc--
Q 047480 478 YGIKP-----QMEHYGCMVDL--LARDG--RLDEAYGLIQSMP-YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL-- 545 (719)
Q Consensus 478 ~g~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 545 (719)
. .| +..+...|..+ ....| ++++|..+|+++. ..|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2 45 24444445544 33334 7888888888873 3344333344444777788888888888877765
Q ss_pred --------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 546 --------EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 546 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+|+++.++..++......|+ +|.++++++.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47777777777777777776 7888888887643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=102.01 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=156.7
Q ss_pred HHHHHHHHhHhcCCCCChhHHHHHHHHHHcc--C-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047480 328 QALELFGKMESLGIHPDEVTMVAVLRACVGL--G-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 404 (719)
+|.+++++..+. .++....| .++ +. + ++++|...+.+ . ...|...|++++|...|
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~-a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQ-A---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHH-H---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHH-H---------------HHHHHHcCCHHHHHHHH
Confidence 466677776654 23222112 222 22 2 47778777772 2 45678899999999888
Q ss_pred hcCCCC---C--C--ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHH
Q 047480 405 YKIPKN---L--K--TVSLFNSIISGLAQHGLGETSIAVFREMELMGL---KPD--GVTFVTVLCACSHG-GLVEEGKQF 471 (719)
Q Consensus 405 ~~~~~~---~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~ 471 (719)
++.... . + ...+|+.+...|...|++++|+..|++..+... .+. ..++..+...|... |++++|...
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 765432 0 1 145799999999999999999999998876311 111 24788888899996 999999999
Q ss_pred HHHHHHcCCcc-C----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCChhHHHH
Q 047480 472 FESMLNYGIKP-Q----MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA---NS-----VIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 472 ~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~-----~~~~~ll~~~~~~g~~~~a~~ 537 (719)
|++.++..... + ...+..+...|.+.|++++|++.+++. ...| +. ..|..+...+...|+++.|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988421110 1 356888999999999999999999986 2222 21 146667777889999999999
Q ss_pred HHHHHhccCCCCchh-----HHHHHHHHh--hcCChHHHHHHHHHHH
Q 047480 538 AGQKLLDLEPDHGAH-----YVLLSNMLA--ETYRWEEARQVRKLMD 577 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 577 (719)
.++++++++|+.+.. +..++..|. ..+++++|...++.+.
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 999999999986543 344566664 5677888888876654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-09 Score=95.02 Aligned_cols=140 Identities=10% Similarity=-0.046 Sum_probs=97.2
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHH
Q 047480 423 GLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501 (719)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 501 (719)
.+...|+.++|++.+++.... .|+. ..+..+...|.+.|++++|.+.|++.++.. +-+...|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 344455666666666665432 3333 345556666777777777777777776532 223667777777888888888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEI-AGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
+|+..|++. ...| +..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888877775 3445 46678888888888888876555 4689999999999999998888888775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-08 Score=85.21 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=70.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~ 533 (719)
...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++++ . .+.+...|..+...+...|+++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHH
Confidence 333444444444444444444221 122334444445555555555555555444 1 1223445566666666677777
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777776653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.84 E-value=6.9e-08 Score=83.11 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=97.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 495 (719)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46667777778888888888888877643 2345567777777778888888888888877543 334667777888888
Q ss_pred hcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 496 RDGRLDEAYGLIQSM-PY-DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
+.|++++|.+.++++ .. +.+..+|..+...+...|+.++|...++++++..|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888776 22 235667777888888888888888888888888775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=113.79 Aligned_cols=169 Identities=10% Similarity=-0.048 Sum_probs=133.4
Q ss_pred HhcCChHHHHHHHhcCC--------CC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 047480 392 AKCGSIDTALSVFYKIP--------KN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSH 461 (719)
Q Consensus 392 ~k~g~~~~A~~~~~~~~--------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 461 (719)
...|++++|.+.|++.. .. +.+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56788888888887765 32 456778888888888999999999999988874 454 4577788888888
Q ss_pred cCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 047480 462 GGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIA 538 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 538 (719)
.|++++|.+.|+++++. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988864 34 36778888888999999988 8888876 3344 566788888888899999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 539 GQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988888889888877665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=90.48 Aligned_cols=181 Identities=10% Similarity=-0.016 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-C---hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLK-T---VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV----TFV 453 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 453 (719)
..+..+...+.+.|++++|...|+++....| + ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777788888777777654312 2 245666777777778888888887777764 34332 233
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047480 454 TVLCACSH------------------GGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514 (719)
Q Consensus 454 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 514 (719)
.+..++.. .|+.++|...|+.+++. .|+ ...+.++..+. ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----HHHHHH----------
Confidence 33333322 34555555555555531 222 11111111000 000000
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG---AHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112344557889999999999999999999976 5688999999999999999999999988654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-07 Score=87.82 Aligned_cols=173 Identities=10% Similarity=-0.028 Sum_probs=134.3
Q ss_pred HHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHH
Q 047480 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG----LVEEGKQFFESM 475 (719)
Q Consensus 400 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m 475 (719)
|.+.|++..+. .++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|++.
T Consensus 5 A~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44444443332 567778888888888888889999888888765 55666667777777 6 889999999988
Q ss_pred HHcCCccChhHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHh
Q 047480 476 LNYGIKPQMEHYGCMVDLLAR----DGRLDEAYGLIQSMP-YDAN---SVIWRALLAACRL----HRNAKIGEIAGQKLL 543 (719)
Q Consensus 476 ~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 543 (719)
.+.| +...+..|..+|.. .+++++|++++++.- ..|. ...+..|...|.. .++.++|...++++.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8654 46677778888877 789999999998874 3332 6778888888877 788999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhc-C-----ChHHHHHHHHHHHhCCC
Q 047480 544 DLEPDHGAHYVLLSNMLAET-Y-----RWEEARQVRKLMDDSGI 581 (719)
Q Consensus 544 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 581 (719)
++ |+++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778899999999764 3 89999999999887763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=93.95 Aligned_cols=162 Identities=7% Similarity=-0.051 Sum_probs=127.3
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 490 (719)
.+...+..+...+.+.|++++|+..|++..+. .|+. ..+..+...+...|++++|...++.+... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 55566777778888899999999999988874 5544 57778888888999999999999887743 4554333222
Q ss_pred -HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--chhHHHHHHHHhhcCC
Q 047480 491 -VDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH--GAHYVLLSNMLAETYR 565 (719)
Q Consensus 491 -i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 565 (719)
...+.+.|+.++|.+.+++. ...| +...+..+...+...|+.++|+..++++++.+|++ ...+..++.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 23366777788888888776 3344 56788888888999999999999999999999988 7889999999999999
Q ss_pred hHHHHHHHHHHH
Q 047480 566 WEEARQVRKLMD 577 (719)
Q Consensus 566 ~~~A~~~~~~m~ 577 (719)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999988877654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-06 Score=86.11 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=116.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-C--CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-----CHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-L--KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-----DGV 450 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~ 450 (719)
++......+..+|...|++++|++++.+.... + .+...+-.++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 33444456667777788888888888776332 1 34556777788888899999999999988773 66 355
Q ss_pred HHHHHHHHH--hc--cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CC-
Q 047480 451 TFVTVLCAC--SH--GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-Y----------DA- 514 (719)
Q Consensus 451 t~~~ll~a~--~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~----------~p- 514 (719)
+...+..++ .. .++..+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+. . .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 556666552 22 33888999999998743 3443333444458889999999999987642 1 24
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
|+.+...++......|+ .|.++.+++.+..|+++..
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 45566566666666676 7889999999999998744
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-08 Score=86.63 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=88.2
Q ss_pred CccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 480 IKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 480 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3454 556777888899999999999999887 3445 677899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCC
Q 047480 557 SNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 557 ~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+.+|...|++++|.+.+++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999988753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=89.26 Aligned_cols=123 Identities=11% Similarity=-0.013 Sum_probs=102.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRN 531 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 531 (719)
|...+...|++++|...++.... ..|+ ...+-.+..+|.+.|++++|++.|++. ...| +..+|..+...+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 34456677899999999998874 2344 556667899999999999999999987 4455 67789999999999999
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH-HHHHHhC
Q 047480 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV-RKLMDDS 579 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 579 (719)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 5776653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.4e-08 Score=87.31 Aligned_cols=157 Identities=10% Similarity=0.011 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 463 (719)
..+...+.+.|++++|...|++.... |.+...|..+...+...|++++|+..|++..+. .|+.. +..+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~-------- 78 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSL-------- 78 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHH--------
Confidence 34445555566666666666655543 344455555555555556666665555554432 22221 1111
Q ss_pred cHHHHHHHHHHHHHcCCccChhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 047480 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDL-LARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQ 540 (719)
Q Consensus 464 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (719)
+... +.+.+...+|.+.+++. ...| +...|..+...+...|++++|...++
T Consensus 79 --------------------------~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 79 --------------------------IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp --------------------------HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------------HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1101 11111112344444443 2334 46677777777888888888888888
Q ss_pred HHhccCCCC--chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 541 KLLDLEPDH--GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 541 ~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888888864 45788888889899999888888877653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-07 Score=93.95 Aligned_cols=220 Identities=12% Similarity=0.022 Sum_probs=148.3
Q ss_pred cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047480 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402 (719)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 402 (719)
.|++++|.+++++..+.. +.. + +...++++.|...+.+ ....|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHHHH
Confidence 466777888777766531 111 0 1113666777666662 2445667788887777
Q ss_pred HHhcCCCC---CCC----hhcHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 047480 403 VFYKIPKN---LKT----VSLFNSIISGLAQHGLGETSIAVFREMELMG---LKPD--GVTFVTVLCACSHGGLVEEGKQ 470 (719)
Q Consensus 403 ~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 470 (719)
.|.+.... ..+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77654332 111 3468888888999999999999998876531 1222 2467788888888 99999999
Q ss_pred HHHHHHHc----CCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 047480 471 FFESMLNY----GIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 471 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
.|++.++. +-.+ ....+..+...|.+.|++++|++.+++.- ..++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988742 1111 14678888999999999999999998761 1122 1255566666777899999999
Q ss_pred HHHHHhccCCCCchh-----HHHHHHHHhhcCChHHHHH
Q 047480 538 AGQKLLDLEPDHGAH-----YVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 571 (719)
.+++++ +.|+.... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99976533 33455555 5677666555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=89.01 Aligned_cols=125 Identities=6% Similarity=0.001 Sum_probs=91.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhc
Q 047480 420 IISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARD 497 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 497 (719)
+...|.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...|+++++. .|+ ...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 788888999999999999988874 454 457888888888999999999999998864 344 67788888887666
Q ss_pred CC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 498 GR--LDEAYGLIQSMPYDANSV--IWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 498 g~--~~eA~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
|. .+++...++... .|+.. .|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 345566666653 34433 34444455667788999999999999999974
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=103.42 Aligned_cols=161 Identities=9% Similarity=-0.040 Sum_probs=121.8
Q ss_pred cCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 047480 394 CGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
.|++++|.+.|++..+. +.+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46788888888887765 566788999999999999999999999999874 454 56888888899999999999999
Q ss_pred HHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhccC
Q 047480 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH---RNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 546 (719)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998643 234778889999999999999999999887 3344 567888888889999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 047480 547 PDHGAHYVLLS 557 (719)
Q Consensus 547 p~~~~~~~~l~ 557 (719)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888777666
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=103.49 Aligned_cols=152 Identities=16% Similarity=0.021 Sum_probs=117.5
Q ss_pred CCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHH
Q 047480 427 HGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 505 (719)
.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.|++..+.. +.+...+..+..+|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999998874 555 5688888999999999999999999998643 2347889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc---CChHHHHHHHHHHHhCC
Q 047480 506 LIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET---YRWEEARQVRKLMDDSG 580 (719)
Q Consensus 506 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~ 580 (719)
.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99987 3344 5678999999999999999999999999999999999999999999999 99999999999887654
Q ss_pred C
Q 047480 581 I 581 (719)
Q Consensus 581 ~ 581 (719)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-07 Score=102.91 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=145.2
Q ss_pred HccCChHHHHHHHHHHHH------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC
Q 047480 356 VGLGALDFGKRLHQQYIE------NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG 428 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g 428 (719)
...+++++|.+.+.+.+. ....+.+...+..+...|.+.|++++|.+.|++..+. +.+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 667788888888873330 0122455677788888899999999999999887765 577889999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
++++|++.|++..+. .|+ ...+..+..++...|++++ .+.|+++++.. +.+...|..+..+|.+.|++++|++.+
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999985 564 4688888889999999999 99999998643 234778899999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHhccCCCCchhH
Q 047480 508 QSM-PYDAN-SVIWRALLAACRLHRN-----AKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 508 ~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
+++ ...|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 998 46676 4567777666655454 3444445555555655555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.8e-08 Score=84.60 Aligned_cols=108 Identities=12% Similarity=0.010 Sum_probs=89.9
Q ss_pred HHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 471 FFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 471 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
.|+.+.. +.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3444443 3343 566777888899999999999999886 3344 677888888889999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+++..+..++.+|...|++++|.+.++...+..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999987643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-05 Score=85.17 Aligned_cols=372 Identities=11% Similarity=-0.007 Sum_probs=191.9
Q ss_pred cC-CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCC-cchHHHH
Q 047480 122 LS-SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKE-PCPALWL 197 (719)
Q Consensus 122 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 197 (719)
.| ++..|+.+++.++..= |. |+++.+..+|++... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 35 3677777777776542 22 889999999987443 688889988887777663 4567778
Q ss_pred HHHHHHC-CCCC-ChhhHHHHHHHHhc----cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 047480 198 FRKMQDS-CIQP-DAFTFVAMFSACTE----LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271 (719)
Q Consensus 198 ~~~m~~~-g~~p-d~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~ 271 (719)
|+..... |..| +...|...+.-+.. .++.+.++.+++.+++. +...-...|......-... ....+..++.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~-~~~~~~~~~~ 147 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELEL-NKITGKKIVG 147 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHH-CHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHh-ccccHHHHHH
Confidence 8877653 5433 55566666665432 35677788888888864 2222222232222221111 1111222211
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCC-------hhHHHHHHHHhHhcC
Q 047480 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTAMISGYSQVGG-------FSQALELFGKMESLG 340 (719)
Q Consensus 272 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g 340 (719)
-+. +.+..|..+++.+.. .+...|...+.--..++. .+.+..+|+++....
T Consensus 148 ----------------~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 148 ----------------DTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp ----------------HHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------HHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 111 122233333322211 233456555543322211 234567777777643
Q ss_pred CCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH-HHHHhcCC--C-------C
Q 047480 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA-LSVFYKIP--K-------N 410 (719)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A-~~~~~~~~--~-------~ 410 (719)
+.+...|...+.-+...|+.+.|..+++ ..... +.+..++. .|+...+.++. ..+.+... . .
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~e-rAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVE-RGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------C
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhc
Confidence 3456666666777777788888888888 44444 33433332 23222211111 11111110 0 0
Q ss_pred -CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCccChhHHH
Q 047480 411 -LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA-CSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488 (719)
Q Consensus 411 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 488 (719)
......|...+....+.++.+.|..+|++. +. ..++...|...... +...++++.|+.+|+...+.- +-+...+.
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~ 358 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHH
Confidence 011234666666666666777777777777 21 11222233211111 111235777777777776421 12234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
..++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666677777777777777763 245566666666566666666666555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-07 Score=78.73 Aligned_cols=108 Identities=10% Similarity=-0.023 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+......+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45555556666666666666666666432 223556666666666666666666666654 2233 45566666666777
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
.|++++|+..++++++++|+++.++..|.++
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7777777777777777777776666655543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-07 Score=84.28 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=100.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHH-HH
Q 047480 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG-LA 425 (719)
Q Consensus 347 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~-~~ 425 (719)
.+......+...|++++|...+++.+... +.+...+..+...|.+.|++++|...|+++....|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 45566778889999999999998433332 3567888999999999999999999999988752344333322211 12
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHHhcCCHHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEA 503 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~eA 503 (719)
..+...+|+..|++..+. .|+ ...+..+...+...|++++|...|+++++....+ +...+..+..+|...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222333456666666653 443 3455566666666666666666666666432111 133555566666666666666
Q ss_pred HHHHHh
Q 047480 504 YGLIQS 509 (719)
Q Consensus 504 ~~~~~~ 509 (719)
...+++
T Consensus 164 ~~~y~~ 169 (176)
T 2r5s_A 164 ASKYRR 169 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-06 Score=88.65 Aligned_cols=366 Identities=9% Similarity=-0.048 Sum_probs=170.1
Q ss_pred hHHHHHHHhhccCCCCChHHHHHHhccCCC--CCccHHHHHHHHHHcCCC-chHHHHHHHHhHh-CCCCCCCcccHHHHH
Q 047480 41 SSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFIWNTLMRGYSRSDS-PQEALVLYTSMLS-KGIVSPNNFTFPFVL 116 (719)
Q Consensus 41 ~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~-~g~~~p~~~~~~~ll 116 (719)
+|..-+..|-. |+.+.|+.+|++... |++..|...+.-..+.+. .+....+|+.... .|..+++...|...+
T Consensus 17 vyer~l~~~P~----~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS----KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 33444455554 677777777776543 677777777666655542 3445566666554 242213444555555
Q ss_pred HHHhc----cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcc
Q 047480 117 NSCAR----LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192 (719)
Q Consensus 117 ~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 192 (719)
.-+.. .++.+.++.+++.+++.....-..+|......-.. .....+.++. .... +.+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~---------------~~~~--~~y~ 154 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIV---------------GDTL--PIFQ 154 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHH---------------HHHH--HHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHH---------------HHHh--HHHH
Confidence 44332 34566677777777753211111122211111000 1111111111 1100 1122
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CC-----cHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHH
Q 047480 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTEL--ND-----PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265 (719)
Q Consensus 193 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~--~~-----~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 265 (719)
.|..+++.+...--..+...|...+.--... +- .+.+..+++.++.. .+.+..+|...+..+.+.|+.+.
T Consensus 155 ~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 155 SSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 2232332222100000112222222221111 00 12344566665554 34445556666666666666666
Q ss_pred HHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHH-HHHHhhcC----------C--CChhhHHHHHHHHHhcCChhHHHH
Q 047480 266 AERVFSTM-GMSKSTAAWSSMISGYTREGKIERA-RQLFDQMD----------Q--RDLVSWTAMISGYSQVGGFSQALE 331 (719)
Q Consensus 266 a~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A-~~~f~~m~----------~--~~~~~~~~li~~~~~~g~~~~A~~ 331 (719)
|..++++. +.+.+...+. .|+...+.++. ..+.+... . .....|...+....+.++.+.|..
T Consensus 232 ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~ 307 (493)
T 2uy1_A 232 AKKVVERGIEMSDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRK 307 (493)
T ss_dssp HHHHHHHHHHHCCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666665 2222222222 12221111111 11111110 0 012346666666666677788888
Q ss_pred HHHHhHhcCCCCChhHHHHHHHHHHc-cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 047480 332 LFGKMESLGIHPDEVTMVAVLRACVG-LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410 (719)
Q Consensus 332 ~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 410 (719)
+|.+. ... ..+...|......-.. .++.+.|+.+++..+...+ .++..+...++...+.|+.+.|..+|+.+.
T Consensus 308 i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 308 LFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 88777 211 1222333221111111 2357778888874444332 334455566777777788888888888773
Q ss_pred CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
.....|...+.--...|+.+.+..+++++..
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456677777666666777777776666653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-06 Score=83.80 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=103.6
Q ss_pred CChhHHHHHHHHhHhcCCCCChh-HHHHHHHHHHccC--ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc--
Q 047480 324 GGFSQALELFGKMESLGIHPDEV-TMVAVLRACVGLG--ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY----AKC-- 394 (719)
Q Consensus 324 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~k~-- 394 (719)
...++|++++.+++.. .|+.. .|+.--.++...+ .++++...+...+.. . +.+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-N-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-C-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-C-cccHHHHHHHHHHHHHHHHhccc
Confidence 3345777777777764 44433 3444444455555 566666666632222 2 22333333322222 223
Q ss_pred -CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 047480 395 -GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGE--TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470 (719)
Q Consensus 395 -g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (719)
++++++.+.++.+.+. ++|..+|+--.-.+.+.|.++ ++++.++++.+.. |
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~----------------------- 177 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--L----------------------- 177 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--T-----------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--C-----------------------
Confidence 4455555555444433 344444544444444444444 5555555554432 1
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHH
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGR------LDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNA-KIGEIAGQK 541 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 541 (719)
-+-..|+.-..++.+.|+ ++++++.++++ ...| |...|+-+...+...|+. +.....+++
T Consensus 178 -----------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 178 -----------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp -----------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred -----------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 123333333333333333 45555555443 2222 455555555555555542 223345555
Q ss_pred HhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 542 LLDLE---PDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 542 ~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+.+++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55544 55555666666666666666666666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-07 Score=79.75 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=90.2
Q ss_pred CccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 480 IKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 480 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4566 567778899999999999999999986 3444 678899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC
Q 047480 557 SNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 557 ~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998874
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.5e-07 Score=87.13 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-CCC-hhHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ--R-D---LVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPD-EVTMV 349 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 349 (719)
+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+...|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666666666777777776666653 2 2 33455566666666666666666666665421 111 22333
Q ss_pred HHHHHHHc--------cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHH
Q 047480 350 AVLRACVG--------LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421 (719)
Q Consensus 350 ~ll~a~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li 421 (719)
.+..++.. .|++++|...+.+.+...+ .+.....++.......+ .....+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a~~~~~~~~~----------------~~~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP--NHELVDDATQKIRELRA----------------KLARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT--TCTTHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc--CchhHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 44444444 5555555555553222221 11111111111000000 0011134455
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcc----------CcHHHHHHHHHHHHH
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKPD----GVTFVTVLCACSHG----------GLVEEGKQFFESMLN 477 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~ 477 (719)
..|...|++++|+..|++..+. .|+ ...+..+..++... |++++|...|+.+++
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 6666777777777777776653 233 12444555555544 666666666666664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=93.78 Aligned_cols=193 Identities=8% Similarity=-0.060 Sum_probs=130.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLC 457 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 457 (719)
+...+..+...|.+.|++++|...|++.... +.+...|..+...|...|++++|+..+++..+. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445566777778888888888888776543 457778888888888888888888888888764 454 457777888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
++...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+. .|+.++|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHH
Confidence 888889999999888887742 2221 111112222222221111111 2222333344443333 3332 68999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhC
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAET-YRWEEARQVRKLMDDS 579 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 579 (719)
+.++++++++|++......+...+.+. +++++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999877777787777776 7899999999988753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=82.66 Aligned_cols=121 Identities=10% Similarity=-0.036 Sum_probs=74.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 533 (719)
...+...|++++|...|++. +.|+...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|+++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 33444555555555555444 2344455555555555566666665555554 1222 4455666666666666777
Q ss_pred HHHHHHHHHhccCCCCc----------------hhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 534 IGEIAGQKLLDLEPDHG----------------AHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+|...+++++++.|++. ..+..++.+|...|++++|.+.++...+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777776666655 677778888888888888888888777643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-06 Score=83.63 Aligned_cols=161 Identities=11% Similarity=-0.022 Sum_probs=119.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCc-cC----hhHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMG-LKPDGV----TFVTVLCACSHGGLVEEGKQFFESMLNYGIK-PQ----MEHY 487 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~ 487 (719)
...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+++.+.... ++ ...+
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334667888899999999999887632 122221 2334566677778999999999998863222 22 2368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chh
Q 047480 488 GCMVDLLARDGRLDEAYGLIQSMP-------YD-AN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAH 552 (719)
Q Consensus 488 ~~li~~~~~~g~~~eA~~~~~~~~-------~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 552 (719)
+.+...|...|++++|++.++++- .. +. ..++..+...|...|++++|...+++++++.+.. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 888999999999999988887762 11 11 2367788888999999999999999998765432 567
Q ss_pred HHHHHHHHhhcCC-hHHHHHHHHHHHh
Q 047480 553 YVLLSNMLAETYR-WEEARQVRKLMDD 578 (719)
Q Consensus 553 ~~~l~~~~~~~g~-~~~A~~~~~~m~~ 578 (719)
|..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999995 6999998888753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-05 Score=78.07 Aligned_cols=237 Identities=9% Similarity=-0.028 Sum_probs=154.4
Q ss_pred HHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcC--ChhHHHHHHHHhHhcCCCCChhHHHHHHHHH----Hcc-
Q 047480 289 YTREGKIERARQLFDQMDQ--R-DLVSWTAMISGYSQVG--GFSQALELFGKMESLGIHPDEVTMVAVLRAC----VGL- 358 (719)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~- 358 (719)
..+....++|.++++.+.. | +...|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3334445789999998865 3 4456888888888888 9999999999999863 22344455444444 445
Q ss_pred --CChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH--HHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHH
Q 047480 359 --GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID--TALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETS 433 (719)
Q Consensus 359 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~--~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 433 (719)
++++++..++.+.+.. . +.+..+|+--.-.+.+.|.++ ++.+.++++.+. +.|...|+--...+...|+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~-~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~--- 196 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSS-D-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL--- 196 (306)
T ss_dssp TCCCTHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG---
T ss_pred ccCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc---
Confidence 7899999999944443 3 467788888777888889888 999999888764 67888888776666555540
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH-HHHHHHhCC-
Q 047480 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE-AYGLIQSMP- 511 (719)
Q Consensus 434 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e-A~~~~~~~~- 511 (719)
+ ....+++++++++.++... +-|...|+.+..++.+.|+..+ +.++.++.-
T Consensus 197 -------------~-------------~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 197 -------------A-------------TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp -------------C-------------CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred -------------c-------------hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 0 0012344555555555322 2235555555555555555333 344555441
Q ss_pred C----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCchhHHHHHH
Q 047480 512 Y----DANSVIWRALLAACRLHRNAKIGEIAGQKLLD-LEPDHGAHYVLLSN 558 (719)
Q Consensus 512 ~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 558 (719)
. ..+...+..+...+.+.|+.++|.++++++.+ .+|-....|...++
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 1 23556777777777777888888888888775 67876655554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.8e-07 Score=77.77 Aligned_cols=96 Identities=9% Similarity=-0.077 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666778888999999999999886 3344 67788888888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 047480 562 ETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~ 579 (719)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=82.73 Aligned_cols=185 Identities=11% Similarity=0.003 Sum_probs=118.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
.....+.+.|++++|+..|++.... .|+........ ....... ....+...+...|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~---~~~~~~~----------------~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT---NVDKNSE----------------ISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH---HSCTTSH----------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh---hhcchhh----------------hhHHHHHHHHHHHHHC
Confidence 3445667788888888888887764 34332211000 0000000 1122234577888889
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc--HHHHHH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGL--VEEGKQ 470 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~ 470 (719)
|++++|...|++..+. |.+...|..+...|...|++++|+..|++..+. .|+ ..++..+...+...|. .+.+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999998887654 567788999999999999999999999998884 565 4577777777765554 344555
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLA 524 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~ 524 (719)
.++.... ..|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555432 2222333444566677789999999999886 67788766655544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.52 E-value=9e-07 Score=84.40 Aligned_cols=187 Identities=9% Similarity=-0.027 Sum_probs=130.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChh---cHHH
Q 047480 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN-IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVS---LFNS 419 (719)
Q Consensus 345 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~---~~~~ 419 (719)
...+......+...|++++|...+.+.+...+..+. ...+..+...|.+.|++++|...|+++.+. |.+.. .|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566677888999999999999955554332222 356778899999999999999999997654 22332 4555
Q ss_pred HHHHHHh------------------CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 420 IISGLAQ------------------HGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 420 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
+..++.. .|+.++|+..|+++++. .|+.. ....... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5555543 57899999999999974 56654 2221110 0 0011111
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS----VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
......+...|.+.|++++|+..++++ ...|+. ..+..+..++...|+.++|...++++....|++..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112234678899999999999999887 233432 46778888899999999999999999998888654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-06 Score=83.18 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHH-HHHHHH
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN-SIISGL 424 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~-~li~~~ 424 (719)
..+..+...+...|++++|.+.+++.+.. . +.+...+..+...|.+.|++++|...|+++....|+...+. .....+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL-S-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh-C-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 34444555555666666666666632222 2 23455566667777777777777777777665423333222 222235
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc-cChhHHHHHHHHHHhcCCHHH
Q 047480 425 AQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK-PQMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~e 502 (719)
.+.++.++|++.|++..+. .|+ ...+..+...+...|++++|...|+.+++.... .+...+..++.+|...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 5566666666666666653 343 345666666666666777776666666642211 114455566666666666666
Q ss_pred HHHHHHh
Q 047480 503 AYGLIQS 509 (719)
Q Consensus 503 A~~~~~~ 509 (719)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-06 Score=77.46 Aligned_cols=126 Identities=11% Similarity=0.025 Sum_probs=90.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455555666667777777776666432 224566667777777777777777777665 2223 56677888888888
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHH--HHHHhhcCChHHHHHHHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLL--SNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.|++++|...+++++++.|+++..+..+ +..+...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999988777444 444788899999999888765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-06 Score=72.73 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PY-DANSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~ 527 (719)
..+..+...+...|++++|.++++++.+.. +.+...+..+...+.+.|++++|...++++ .. +.+..+|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 345555555666666666666666665422 223555666666777777777777776665 12 235667777777888
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (719)
..|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888988888888887776554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-06 Score=84.83 Aligned_cols=164 Identities=11% Similarity=-0.050 Sum_probs=118.3
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---ccC--h
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-G----VTFVTVLCACSHGGLVEEGKQFFESMLNYGI---KPQ--M 484 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~---~p~--~ 484 (719)
..+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888888888888888776432211 1 1233445556778899999999888874221 111 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------C
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN-----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD------H 549 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 549 (719)
..|+.+...|...|++++|.+.++++- ..|+ ..++..+...|...|++++|...+++++++.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 478888899999999999988887751 1222 247788888899999999999999999876432 1
Q ss_pred chhHHHHHHHHhhcCChHHH-HHHHHHHHh
Q 047480 550 GAHYVLLSNMLAETYRWEEA-RQVRKLMDD 578 (719)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 578 (719)
+.+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46788999999999999999 777777653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.4e-06 Score=77.92 Aligned_cols=144 Identities=8% Similarity=-0.093 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (719)
..+...|...|++++|...|++... ++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3445556666666666666666654 555666666666666666666666666665532 2233455555555566666
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
+++|.+.|+...+.. |+..... +...| +...| ....|..+...+...|++++|...+++++
T Consensus 87 ~~~A~~~~~~al~~~--~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL--RGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTT--TTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666666555321 1100000 00000 01222 23567777788889999999999999999
Q ss_pred ccCCCC
Q 047480 544 DLEPDH 549 (719)
Q Consensus 544 ~~~p~~ 549 (719)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 999975
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=72.97 Aligned_cols=115 Identities=12% Similarity=-0.012 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+..+...+...|++++|...|+...... +.+...+..+...+...|++++|.+.+++. ...| +...|..+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 45555555666666666666666666422 223556666677777777777777777665 2223 45677777778888
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (719)
.|++++|...+++++++.|+++..+..++.++...|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999998888888899888888775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=88.49 Aligned_cols=94 Identities=14% Similarity=-0.013 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467788888899999999999888876 3344 67788888889999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHH
Q 047480 562 ETYRWEEA-RQVRKLMD 577 (719)
Q Consensus 562 ~~g~~~~A-~~~~~~m~ 577 (719)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-06 Score=73.50 Aligned_cols=82 Identities=12% Similarity=-0.011 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...|...|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|++...+..++.++.
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 334444444444555555555544443 1122 45566666677777788888888888888888888888888888887
Q ss_pred hcCC
Q 047480 562 ETYR 565 (719)
Q Consensus 562 ~~g~ 565 (719)
..|+
T Consensus 130 ~~~~ 133 (133)
T 2lni_A 130 AQYN 133 (133)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 6654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-07 Score=88.67 Aligned_cols=184 Identities=9% Similarity=-0.097 Sum_probs=130.3
Q ss_pred hcCChHHHHHHHhcCCCC-CCChhcHHHH-------HHHHHhCCChhHHHHHHHHHHHcCCCCCHH--------------
Q 047480 393 KCGSIDTALSVFYKIPKN-LKTVSLFNSI-------ISGLAQHGLGETSIAVFREMELMGLKPDGV-------------- 450 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~-~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 450 (719)
..++...|.+.|.++... +.....|+.+ ...+...++..+++..+.+-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467777788887776654 4556677777 4555555555566555554443 344331
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HH
Q 047480 451 --------TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS----VI 518 (719)
Q Consensus 451 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~----~~ 518 (719)
....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223455677889999999999887743 354335556667888999999999999877444433 35
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLE--PD-HGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+..+..++...|+.++|+..++++.... |. .+.....++.++.+.|+.++|...++++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6777778999999999999999997543 54 44578889999999999999999999998743
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.6e-07 Score=80.49 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=84.2
Q ss_pred hccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hH
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAA-CRLHRNA--KI 534 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 534 (719)
...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+... +...|+. ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34566666666666666432 234566677777777777777777777765 2223 55566666666 6677887 88
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
|...++++++.+|+++..+..++.+|...|++++|...++...+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888999999998888887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-06 Score=75.31 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=87.2
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047480 445 LKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRA 521 (719)
Q Consensus 445 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 521 (719)
+.|+.. .+..+...+.+.|++++|...|+.+++.. +.+...|..+..+|.+.|++++|++.|++. ...| +...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 456553 67777788899999999999999998643 234788889999999999999999999887 3444 5678888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+..++...|++++|+..+++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88999999999999999999999999753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-05 Score=77.78 Aligned_cols=159 Identities=13% Similarity=0.001 Sum_probs=119.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCC---CCh---h-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCH----HHHHH
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKNL---KTV---S-LFNSIISGLAQHGLGETSIAVFREMELMGLK-PDG----VTFVT 454 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~~---~~~---~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 454 (719)
.+..+...|++++|...+++..... ++. . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999998865531 221 1 2334666677788999999999999974322 232 26888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHH----c-CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047480 455 VLCACSHGGLVEEGKQFFESMLN----Y-GIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-------PYDAN-SVIWR 520 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~ 520 (719)
+...|...|++++|..+|+++.+ . +..+. ...+..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999883 1 22222 347888999999999999999998875 11222 56788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 047480 521 ALLAACRLHRN-AKIGEIAGQKLLDL 545 (719)
Q Consensus 521 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 545 (719)
.+...+...|+ .++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888999995 59999999988753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-05 Score=74.92 Aligned_cols=163 Identities=9% Similarity=0.037 Sum_probs=106.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccC----ChHHHHHHHHHHHHHcCCCCChhH
Q 047480 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG----ALDFGKRLHQQYIENVVFGRNIFL 383 (719)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 383 (719)
.+..++..+...|...+++++|++.|++..+.| +...+..+...+.. + +.++|...+. ...+. .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~-~A~~~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE-KAVEA---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH-HHHHT---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH-HHHHC---CCHHH
Confidence 455666666666777777777777777776654 34445555555555 4 6777777777 34333 24555
Q ss_pred HHHHHHHHHh----cCChHHHHHHHhcCCCCCCC---hhcHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHH
Q 047480 384 TTAVIDMYAK----CGSIDTALSVFYKIPKNLKT---VSLFNSIISGLAQ----HGLGETSIAVFREMELMGLKPDGVTF 452 (719)
Q Consensus 384 ~~~li~~y~k----~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 452 (719)
+..|..+|.. .+++++|...|++..+..+. +.++..|...|.. .++.++|+..|++..+. .++...+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHH
Confidence 6667777766 67788888888877664232 5677777777777 67788888888888775 2344455
Q ss_pred HHHHHHHhcc-C-----cHHHHHHHHHHHHHcCC
Q 047480 453 VTVLCACSHG-G-----LVEEGKQFFESMLNYGI 480 (719)
Q Consensus 453 ~~ll~a~~~~-g-----~~~~a~~~~~~m~~~g~ 480 (719)
..|...|... | +.++|..+|+...+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5555555432 2 78888888888776663
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-06 Score=73.06 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777888888888888888776 3334 56788888888889999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 047480 562 ETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~ 579 (719)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=9.8e-07 Score=85.38 Aligned_cols=136 Identities=10% Similarity=-0.078 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC--hhHHHHHHHHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ--MEHYGCMVDLLA 495 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~ 495 (719)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34556666777777777777766653 3544444444446777788888888877554321 111 235666777888
Q ss_pred hcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 496 RDGRLDEAYGLIQSMP---YDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
+.|++++|++.|++.. ..|. ...+.....+++..|+.++|...+++++..+|+ +.++..|.
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888762 2143 235566666788888999999999999988887 65555553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-06 Score=69.63 Aligned_cols=98 Identities=14% Similarity=0.009 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD--HGAHYVLLSNM 559 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 559 (719)
...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777778888888888887765 222 35667778888888889999999999999999998 88889999999
Q ss_pred Hhhc-CChHHHHHHHHHHHhCCC
Q 047480 560 LAET-YRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 560 ~~~~-g~~~~A~~~~~~m~~~~~ 581 (719)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998887543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=72.54 Aligned_cols=95 Identities=15% Similarity=-0.020 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 3444 6778888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 047480 564 YRWEEARQVRKLMDDSG 580 (719)
Q Consensus 564 g~~~~A~~~~~~m~~~~ 580 (719)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-06 Score=75.94 Aligned_cols=107 Identities=9% Similarity=-0.032 Sum_probs=77.6
Q ss_pred CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 047480 446 KPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRAL 522 (719)
Q Consensus 446 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 522 (719)
.|+. ..+..+...+...|++++|...|+.++... +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4443 355566667777788888888887777532 234667777778888888888888888776 2334 55677777
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
..++...|+.++|...+++++++.|+++...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 7788888999999999999999888876553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=87.48 Aligned_cols=195 Identities=10% Similarity=-0.039 Sum_probs=142.8
Q ss_pred cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHH
Q 047480 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437 (719)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 437 (719)
.|++++|.+++. ...+..- .. .+...++++.|...|.+ ....|...|++++|.+.|
T Consensus 4 ~~~~~eA~~~~~-~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIA-KAEKYLK-TS---------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHH-HHHHHHC-CC---------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHH-HHHHHcc-cc---------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHH
Confidence 456677887777 4433211 11 01114677777776654 456788999999999999
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc--CC-ccC--hhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 438 REMELM----GLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNY--GI-KPQ--MEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 438 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--g~-~p~--~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
.+..+. +-.+. ..+|..+...|...|++++|...|++.++. .. .+. ..++..+..+|.+ |++++|++.+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 987753 21111 247888888999999999999999988732 11 122 4678888999988 9999999999
Q ss_pred HhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCChHHHHHHH
Q 047480 508 QSMP-Y---DAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG------AHYVLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 508 ~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~ 573 (719)
++.- . ..+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8761 1 111 35678888889999999999999999999876543 26677888888999999999999
Q ss_pred HHHH
Q 047480 574 KLMD 577 (719)
Q Consensus 574 ~~m~ 577 (719)
++..
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9987
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.6e-06 Score=75.74 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCC--CC----chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEP--DH----GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+..+...+...|++++|...+++++++.+ ++ ...+..++.+|...|++++|.+.+++..+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444445555666666666655554321 11 12356777778888888888777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.2e-06 Score=71.16 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=81.7
Q ss_pred cChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
.+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34667777788888888888888888775 2333 567788888888899999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHhC
Q 047480 560 LAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m~~~ 579 (719)
|...|++++|...++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.4e-06 Score=74.94 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...|.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455555555666666666655554 2223 44555556666666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHHHhC
Q 047480 562 ETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~ 579 (719)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666666543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.3e-06 Score=74.51 Aligned_cols=127 Identities=10% Similarity=0.064 Sum_probs=97.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHH-HHhcCCH--H
Q 047480 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL-LARDGRL--D 501 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~ 501 (719)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ |.+.|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888998888887752 3345688888888899999999999999988532 2346677788888 7788998 9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
+|...++++ ...| +...|..+...+...|++++|...+++++++.|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999886 3344 567788888889999999999999999999999886544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-05 Score=65.96 Aligned_cols=107 Identities=13% Similarity=0.039 Sum_probs=58.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047480 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH 529 (719)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 529 (719)
+..+...+...|++++|...|+...... +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444455555555555555554321 123445555555555556666665555554 1222 345566666666666
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
|++++|...++++++..|+++..+..++.+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777666555555444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=79.53 Aligned_cols=162 Identities=12% Similarity=-0.019 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCCh------hcHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HH
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTV------SLFNSIISGLAQHGLGETSIAVFREMELMGL---KPD--GV 450 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 450 (719)
.+...+..|...|++++|.+.+.+..+. +... ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445677788899999999888754432 1111 2234455667888999999999999875321 122 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc-CCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQ-----MEHYGCMVDLLARDGRLDEAYGLIQSMP-------YDA-NS 516 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~~-------~~p-~~ 516 (719)
+++.+...|...|++++|..+|+++.+. ...|+ ...+..+...|.+.|++++|++.+++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988721 11222 2578889999999999999999988751 111 15
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHhc
Q 047480 517 VIWRALLAACRLHRNAKIG-EIAGQKLLD 544 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 544 (719)
.+|..+...+...|+.++| ...++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888889999999999 777888765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.9e-06 Score=76.39 Aligned_cols=151 Identities=11% Similarity=0.001 Sum_probs=98.4
Q ss_pred hcCChHHHHH---HHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCc
Q 047480 393 KCGSIDTALS---VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM----GLKPD-GVTFVTVLCACSHGGL 464 (719)
Q Consensus 393 k~g~~~~A~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~ 464 (719)
..|++++|.+ .+..-+. .....++.+...|...|++++|+..+++..+. +..|. ..++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4577777777 4433222 34567777777888888888888888777651 22222 2366677777888888
Q ss_pred HHHHHHHHHHHHHc----CCcc--ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCH----HHHHHHHHHHHhcC
Q 047480 465 VEEGKQFFESMLNY----GIKP--QMEHYGCMVDLLARDGRLDEAYGLIQSMP----YDANS----VIWRALLAACRLHR 530 (719)
Q Consensus 465 ~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~~----~~~~~ll~~~~~~g 530 (719)
+++|...+++..+. +-.| ....+..+...+...|++++|.+.+++.- ..++. .++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888877632 2111 13456777788888888888888877651 11222 23566666788888
Q ss_pred ChhHHHHHHHHHhcc
Q 047480 531 NAKIGEIAGQKLLDL 545 (719)
Q Consensus 531 ~~~~a~~~~~~~~~~ 545 (719)
++++|...+++++++
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888887764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=8.6e-06 Score=67.78 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999987 2334 6778888888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhCC
Q 047480 561 AETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 561 ~~~g~~~~A~~~~~~m~~~~ 580 (719)
...|++++|.+.++...+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999988653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.6e-06 Score=71.83 Aligned_cols=94 Identities=10% Similarity=-0.065 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch-------hHHH
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA-------HYVL 555 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 555 (719)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566788888888888888888876 3344 5677888888899999999999999999998887643 5778
Q ss_pred HHHHHhhcCChHHHHHHHHHHHh
Q 047480 556 LSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 556 l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999998765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.20 E-value=9.8e-06 Score=68.19 Aligned_cols=97 Identities=21% Similarity=0.198 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 223 367788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 047480 562 ETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~~ 580 (719)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8.2e-05 Score=74.46 Aligned_cols=224 Identities=10% Similarity=0.002 Sum_probs=117.8
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccC-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-
Q 047480 318 SGYSQVGGFSQALELFGKMESLGIHPDE-VTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC- 394 (719)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~- 394 (719)
......+..++|++++.+++.. .|+. ..|+.--.++...+ .++++..++. .+.... +.+..+|+.-...+.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~-~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMN-EFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 3344455567788888888775 3433 34454444555555 4666776666 333332 34555555555555554
Q ss_pred C-ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 047480 395 G-SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGE--------TSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464 (719)
Q Consensus 395 g-~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (719)
+ +++++.+.++++.+. ++|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 5 566666666665554 455556655554444444444 5555555555432 1133344444444444432
Q ss_pred -------HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----
Q 047480 465 -------VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA----- 532 (719)
Q Consensus 465 -------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~----- 532 (719)
++++++++++++... | -|...|+-+-..+.+.|+.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~--P-------------------------------~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI--P-------------------------------HNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC--T-------------------------------TCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred cccchHHHHHHHHHHHHHHHhC--C-------------------------------CCHHHHHHHHHHHHhcCCCccccc
Confidence 344444444444211 1 1444454444444333332
Q ss_pred ---------------hHHHHHHHHHhcc------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 533 ---------------KIGEIAGQKLLDL------EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 533 ---------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
......+..+... ++.++.+...|+++|...|+.++|.++++.+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1112222222222 2456677889999999999999999999998743
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00077 Score=67.43 Aligned_cols=177 Identities=10% Similarity=-0.030 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcC-ChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc
Q 047480 282 WSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVG-GFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357 (719)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 357 (719)
++.+-....+.+..++|.++++.+.. .+...|+.--..+...| .+++++++++.+.... +-+..+|+.-..++..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33333444455566789999998875 45567888877888888 5999999999999864 3355667666666666
Q ss_pred c-C-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH--------HHHHHHhcCCCC-CCChhcHHHHHHHHHh
Q 047480 358 L-G-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID--------TALSVFYKIPKN-LKTVSLFNSIISGLAQ 426 (719)
Q Consensus 358 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~--------~A~~~~~~~~~~-~~~~~~~~~li~~~~~ 426 (719)
. + +.+++.+++. .+.+.. +.+..+|+--.-.+.+.|..+ ++.+.++++.+. +.|...|+-....+.+
T Consensus 136 l~~~~~~~EL~~~~-k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIH-GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHH-HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 5 6 7888998888 444433 456777776665566666665 888888877654 6788899999888888
Q ss_pred CCC-------hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 047480 427 HGL-------GETSIAVFREMELMGLKPDG-VTFVTVLCACSHGG 463 (719)
Q Consensus 427 ~g~-------~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 463 (719)
.++ ++++++.+++++.. .|+. ..|+-+-..+.+.|
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 876 68899999998874 5544 45655444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.8e-06 Score=69.53 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3667888889999999999999999886 4444 6778888888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 047480 561 AETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 561 ~~~g~~~~A~~~~~~m~~~ 579 (719)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=8.4e-06 Score=71.08 Aligned_cols=106 Identities=9% Similarity=-0.031 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+..+...+...|++++|...|+.++... +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44445555666666777777766666432 223556666677777777777777777665 2233 44566667777778
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
.|++++|...+++++++.|+++.......
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88888888888888888887766554433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=74.77 Aligned_cols=172 Identities=8% Similarity=-0.073 Sum_probs=103.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
+......|++++|.+.|+.-... ......|..+...+...|++++|+..|++..+. .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33444556666666666544331 223446777777778888888888888887763 2222111000 000
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
.-. . ......+..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++
T Consensus 81 ~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 81 DKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 000 0 001356677778888888888888888776 2333 567788888889999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCChHHHH-HHHHHHHhC
Q 047480 545 LEPDHGAHYVLLSNMLAETYRWEEAR-QVRKLMDDS 579 (719)
Q Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 579 (719)
++|+++.++..++.++...|+.+++. ..++.|-.+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998888887776 455555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=69.77 Aligned_cols=94 Identities=16% Similarity=0.043 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
..+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 33444444444555555555544443 23333 33444444445555555555555555555555555555555555
Q ss_pred HhhcCChHHHHHHHHHHHh
Q 047480 560 LAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m~~ 578 (719)
|...|++++|...+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.8e-05 Score=67.83 Aligned_cols=109 Identities=11% Similarity=-0.046 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLA 524 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 524 (719)
.+..+...+...|++++|...|+...+. .|+ ...+..+...|.+.|++++|++.+++. ...| +...|..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3333444444444444444444444431 222 344555555666666666666666554 2223 4556666777
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
.+...|++++|...++++++++|+++..+..+..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7777888888888888888888887766666665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=2e-05 Score=66.82 Aligned_cols=109 Identities=8% Similarity=-0.124 Sum_probs=65.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555566666666666555422 223555666666666666666666666654 2233 45566666677777
Q ss_pred cCChhHHHHHHHHHhccC------CCCchhHHHHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLE------PDHGAHYVLLSNML 560 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 560 (719)
.|++++|...++++++++ |+++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 777777777777777777 66665555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=8.4e-06 Score=71.13 Aligned_cols=63 Identities=19% Similarity=0.029 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCchhH----HHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDL-------EPDHGAHY----VLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|...+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888888 99999999 99999999999999999999998763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.4e-05 Score=69.88 Aligned_cols=126 Identities=6% Similarity=-0.068 Sum_probs=66.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 495 (719)
.|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555555666666666666555431 2233455555555566666666666666655422 223455555666666
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChhHHHHHHHHHh
Q 047480 496 RDGRLDEAYGLIQSM-PYDA-NSVIWRAL--LAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~ 543 (719)
+.|++++|.+.++++ ...| +...|..+ ...+...|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 666666666666554 1222 33333222 222455566666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=70.48 Aligned_cols=107 Identities=13% Similarity=0.007 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 527 (719)
..+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345555566666677777777777666432 224666777777777778888887777765 2334 5677888888899
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
..|++++|...++++++++|+++..+...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999887665444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=67.90 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567788889999999999999999987 2333 6778888888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhCC
Q 047480 561 AETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 561 ~~~g~~~~A~~~~~~m~~~~ 580 (719)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=77.64 Aligned_cols=93 Identities=9% Similarity=-0.038 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 047480 247 MLLKTAVINMYAKCGLMNMAERVFSTM-G-MSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYS 321 (719)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~a~~~~~~~-~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 321 (719)
...+..+...|.+.|++++|...+++. . .+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555666666666666666555 2 233566777777778888888888888777654 34556777777788
Q ss_pred hcCChhHHHHHHHHhHhc
Q 047480 322 QVGGFSQALELFGKMESL 339 (719)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~ 339 (719)
..|++++|+..|++..+.
T Consensus 84 ~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.6e-05 Score=82.25 Aligned_cols=114 Identities=7% Similarity=-0.042 Sum_probs=56.4
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 502 (719)
+.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44455666666666655553 333 3455555555666666666666666655432 1224555555666666666666
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChhHHHHHHH
Q 047480 503 AYGLIQSM-PYDA-NSVIWRALLAA--CRLHRNAKIGEIAGQ 540 (719)
Q Consensus 503 A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 540 (719)
|++.+++. ...| +...+..+..+ +...|++++|+..++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66665554 1222 22233333333 455566666666666
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-05 Score=70.24 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567777788888999999999999999999999999999999999999999999999888764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4.1e-06 Score=85.18 Aligned_cols=147 Identities=7% Similarity=-0.018 Sum_probs=109.4
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD----------------GVTFVTVLC 457 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~ 457 (719)
+++++|...|+..... +.+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444332 234567888888888899999999999888874 344 368888888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 535 (719)
++.+.|++++|...++++++.. +.+...|..+..+|...|++++|++.|+++ ...| +..++..+...+...|+.++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998643 234778888899999999999999999886 3444 566788888888888888888
Q ss_pred H-HHHHHHhc
Q 047480 536 E-IAGQKLLD 544 (719)
Q Consensus 536 ~-~~~~~~~~ 544 (719)
. ..++++++
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4 46666653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00036 Score=69.50 Aligned_cols=176 Identities=9% Similarity=-0.024 Sum_probs=83.2
Q ss_pred CChhHHHHHHHHHHhcC--ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCG--SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL-GETSIAVFREMELMGLKPDGVTFVT 454 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g--~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ 454 (719)
.+..+|+.-.-.+.+.| .++++...++.+.+. +.|..+|+--.-.+...|. ++++++.++++++.. +-|...|+.
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 34445554444444545 255666666555543 4556666665555555565 366666666666542 123334433
Q ss_pred HHHHHhcc--------------CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc-----------CCHHHHHHHHHh
Q 047480 455 VLCACSHG--------------GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD-----------GRLDEAYGLIQS 509 (719)
Q Consensus 455 ll~a~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~eA~~~~~~ 509 (719)
....+.+. +.++++.+++...+... +-|...|+.+-..+.+. +.++++++.+++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 33332222 33555666666555321 22244454444444433 334555555555
Q ss_pred C-CCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 510 M-PYDANSVIWRALLAAC-----RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 510 ~-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
+ ...||. .|..+-.+. ...+..++....+.++.+++|...+.|..+.
T Consensus 264 lle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 264 LQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4 233443 333221111 1234445555556666666665444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0004 Score=69.18 Aligned_cols=181 Identities=11% Similarity=0.029 Sum_probs=132.8
Q ss_pred hHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 047480 397 IDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL--GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL-VEEGKQFF 472 (719)
Q Consensus 397 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 472 (719)
++++...++.+... +++..+|+--...+...|+ +++++++++++.+.. +-|...|+.-...+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45677777766544 6788899988888888884 899999999999863 3355677766666777787 69999999
Q ss_pred HHHHHcCCccChhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 047480 473 ESMLNYGIKPQMEHYGCMVDLLARD--------------GRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH------- 529 (719)
Q Consensus 473 ~~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~------- 529 (719)
..+++.. +-+...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 9999654 34567777776666655 4588899988876 3344 778888666555544
Q ss_pred ----CChhHHHHHHHHHhccCCCCchhHHHHHHH---HhhcCChHHHHHHHHHHHhC
Q 047480 530 ----RNAKIGEIAGQKLLDLEPDHGAHYVLLSNM---LAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 530 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~ 579 (719)
+.++++++.++++++++|++.-.+..++.. ....|..++....+.++.+-
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 457899999999999999985544444332 23467788888888888763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=67.94 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHH
Q 047480 489 CMVDLLARDGRLDEAYGLIQSM-PYDANS----VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH---GAHYVLLSNML 560 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 560 (719)
.+...+.+.|++++|.+.+++. ...|+. ..|..+...+...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666677777777776665 122322 355566666777777777877777777777777 56677777888
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 047480 561 AETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 561 ~~~g~~~~A~~~~~~m~~~ 579 (719)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888887777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.2e-05 Score=66.59 Aligned_cols=99 Identities=8% Similarity=-0.100 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047480 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAAC 526 (719)
Q Consensus 449 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 526 (719)
...+..+...+...|++++|...|+..+... +.+...+..+..+|...|++++|...+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555555555555555555555555322 122455555666666666666666666554 2223 445666666667
Q ss_pred HhcCChhHHHHHHHHHhccCCC
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
...|++++|...+++++++.|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 7777777777777777776665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.03 E-value=3.2e-05 Score=82.21 Aligned_cols=145 Identities=10% Similarity=-0.008 Sum_probs=98.9
Q ss_pred ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHH
Q 047480 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492 (719)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 492 (719)
....|..+...|.+.|++++|+..|++.++. .|+...+ . -+... ... ......|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHH----HHHHHHHHHHHH
Confidence 3445666666777777777777777776652 2221110 0 00000 000 011467778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH
Q 047480 493 LLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (719)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998886 3334 66788888899999999999999999999999999999999999999999999876
Q ss_pred H-HHHHHHh
Q 047480 571 Q-VRKLMDD 578 (719)
Q Consensus 571 ~-~~~~m~~ 578 (719)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.9e-05 Score=79.08 Aligned_cols=189 Identities=6% Similarity=-0.115 Sum_probs=127.2
Q ss_pred HHHhcCChHHHHHHHhcCCCCCC---C---------------hhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKNLK---T---------------VSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGV 450 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~~~---~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ 450 (719)
.+.+.|++++|.+.|..+.+..+ + ..++..+...|...|++++|.+++.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556667777766665433201 1 113667788888889999998888877642 1122221
Q ss_pred ----HHHHHHHHHhccCcHHHHHHHHHHHHH----cCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC
Q 047480 451 ----TFVTVLCACSHGGLVEEGKQFFESMLN----YGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-----P--YDA 514 (719)
Q Consensus 451 ----t~~~ll~a~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-----~--~~p 514 (719)
..+.+-..+...|+.+++..+++.... .+..+. ...+..|...|...|++++|..++++. . .+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 223333344567889999998887762 222232 457778899999999999999988765 1 122
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---CC----chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 515 N-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP---DH----GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
. ..++..+...|...|++++|...+++++...| +. ...+..++..+...|++++|...+.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 34677777889999999999999998876532 22 24567788888999999999888777653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-05 Score=85.23 Aligned_cols=119 Identities=10% Similarity=0.021 Sum_probs=99.0
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 533 (719)
...+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345677899999999999999642 234788999999999999999999999887 4455 5678899999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHH--HhhcCChHHHHHHHHH
Q 047480 534 IGEIAGQKLLDLEPDHGAHYVLLSNM--LAETYRWEEARQVRKL 575 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 575 (719)
+|+..+++++++.|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8899999999999883
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.2e-05 Score=61.70 Aligned_cols=98 Identities=17% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 047480 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA---NSVIWRALLAACR 527 (719)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~~~ 527 (719)
+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3334444445555555555555554321 123445555556666666666666666554 2222 3556666666677
Q ss_pred hc-CChhHHHHHHHHHhccCCCCc
Q 047480 528 LH-RNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 528 ~~-g~~~~a~~~~~~~~~~~p~~~ 550 (719)
.. |+.++|...++++++..|+++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCCC
Confidence 77 777777777777777777653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.4e-06 Score=69.50 Aligned_cols=83 Identities=14% Similarity=0.051 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 497 DGRLDEAYGLIQSM-PY---DA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 497 ~g~~~eA~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666554 22 23 234566666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 047480 572 VRKLMDDS 579 (719)
Q Consensus 572 ~~~~m~~~ 579 (719)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=74.54 Aligned_cols=148 Identities=10% Similarity=-0.008 Sum_probs=82.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCCh----------------
Q 047480 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTV---------------- 414 (719)
Q Consensus 352 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~---------------- 414 (719)
.......+.++.+.+.+. +..... ......+..+...|.+.|++++|...|++.... +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYD-YTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGG-CCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhh-CCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 334445566666666665 222111 123445667788899999999999999986653 2232
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHH
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 493 (719)
..|..+..+|...|++++|+..+++..+. .| +...+..+..++...|++++|...|+...+.. +.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 55666666677777777777777776664 33 33456666666666666666666666666422 1224455555555
Q ss_pred HHhcCCHHHHH
Q 047480 494 LARDGRLDEAY 504 (719)
Q Consensus 494 ~~~~g~~~eA~ 504 (719)
+.+.++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555554444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.5e-05 Score=66.24 Aligned_cols=96 Identities=9% Similarity=0.015 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------chhHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH-------GAHYV 554 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 554 (719)
...+..+...+...|++++|...+++. ... .+...|..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777777888888888887765 222 356677777778888889999999999988887766 77889
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 555 LLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 555 ~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=4.4e-05 Score=78.50 Aligned_cols=135 Identities=8% Similarity=-0.037 Sum_probs=98.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLL 494 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 494 (719)
.|..+...+.+.|++++|++.|++.++. .|+.. .... .+...+ ..| +...|..+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAK--LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHHHH
Confidence 4566666666777777777777666541 01000 0000 011110 222 356788889999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 495 ARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4555 567888888899999999999999999999999999999999999999888887754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-05 Score=67.44 Aligned_cols=61 Identities=13% Similarity=0.002 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEP------DHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++..+...+...|++++|...+++++++.+ ..+..+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445555666666666666666654321 1234677888888899999999988887764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.2e-05 Score=64.39 Aligned_cols=94 Identities=14% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNA 532 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 532 (719)
+...+.+.|++++|...|+..++.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+...|+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444555666666666666665421 123555666666666666666666666655 2333 445666666667777777
Q ss_pred hHHHHHHHHHhccCCCC
Q 047480 533 KIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~ 549 (719)
++|+..++++++++|++
T Consensus 102 ~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcCC
Confidence 77777777777777764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.3e-05 Score=65.69 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--CccC----hhHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYG--IKPQ----MEHYGC 489 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~ 489 (719)
|..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|...|++++|++.++..++.. ..++ ...|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 444444445555555555555554442 232 2344444445555555555555555444211 0000 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 047480 490 MVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~ 510 (719)
+...|...|++++|++.|++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0001 Score=62.32 Aligned_cols=44 Identities=7% Similarity=-0.201 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
..+|..+...+...|++++|...++++++..| ++.....+..+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 34555555666666777777777777777666 344444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00026 Score=77.00 Aligned_cols=171 Identities=10% Similarity=0.008 Sum_probs=136.4
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC----------hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL----------GETSIAVFREMELMGLKPD-GVTFVTVLCACSHG 462 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 462 (719)
..-++|.+.++.+... +.+...|+.--..+...|+ ++++++.++++.+. .|. ..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 3445778888777654 5667788887777777776 89999999999985 454 45777777778888
Q ss_pred C--cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 047480 463 G--LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG-RLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH-------- 529 (719)
Q Consensus 463 g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 529 (719)
| +++++.++++++.+.. +-+-..|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 8 7799999999999643 334677888788888888 899999999887 4455 778898887776553
Q ss_pred ------CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 530 ------RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 530 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
+.++++.+.+.++++++|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999988665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=9.7e-05 Score=78.40 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=88.3
Q ss_pred HhccCcHHHHHHHHHHHHH---cCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 047480 459 CSHGGLVEEGKQFFESMLN---YGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSM---------PYDANS-VIWRA 521 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ 521 (719)
+...|++++|..++++.++ .-+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766651 112222 456777778888888888887777664 233443 46777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCchh---HHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLD-----LEPDHGAH---YVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
|...|...|++++|+.+++++++ +.|+.|.+ ...|..++...|++++|..++..++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888876 56777654 5578888899999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=78.84 Aligned_cols=149 Identities=13% Similarity=-0.029 Sum_probs=82.2
Q ss_pred ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHH
Q 047480 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492 (719)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 492 (719)
....|..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3445777777788888888998888887763 455432 233444444433221 236777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH-hhcCChHHH
Q 047480 493 LLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML-AETYRWEEA 569 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 569 (719)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988876 3344 5678888888899999999999999999999999888888888774 455677778
Q ss_pred HHHHHHHHhCC
Q 047480 570 RQVRKLMDDSG 580 (719)
Q Consensus 570 ~~~~~~m~~~~ 580 (719)
...++.|.+..
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888776543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00013 Score=61.84 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=58.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCccC-h---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 047480 457 CACSHGGLVEEGKQFFESMLNYGIKPQ-M---EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACR 527 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~ 527 (719)
..+...|++++|...|+.+.+.. |+ . ..+..+..+|.+.|++++|.+.+++. ...|+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445566666666666555321 22 2 35555666666666666666666654 22232 345566666677
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
..|+.++|...++++++..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 77888888888888888888765544433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.8e-05 Score=66.18 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=55.9
Q ss_pred cCcHHHHHHHHHHHHHcCC-cc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 047480 462 GGLVEEGKQFFESMLNYGI-KP-QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
.|++++|...|++.++.+. .| +...+..+..+|.+.|++++|++.+++. ...| +..++..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666666664321 12 2455666667777777777777777665 2233 45566666667777778888888
Q ss_pred HHHHHhccCCCCchh
Q 047480 538 AGQKLLDLEPDHGAH 552 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~ 552 (719)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 888888777776544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.79 E-value=4e-05 Score=66.83 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM--------PYDANS-VIW----RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
.|..+..++.+.|++++|+..+++. ...|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666665554 237754 578 888899999999999999999999999988765
Q ss_pred HH
Q 047480 553 YV 554 (719)
Q Consensus 553 ~~ 554 (719)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.1e-05 Score=66.56 Aligned_cols=93 Identities=13% Similarity=-0.080 Sum_probs=74.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAHYV 554 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 554 (719)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888888999988888876 3334 66788888888999999999999999999999998 67788
Q ss_pred HHHHHHhhcCChHHHHHHHHH
Q 047480 555 LLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 555 ~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877776654443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.1e-05 Score=66.72 Aligned_cols=76 Identities=16% Similarity=0.015 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-hhHHHHHHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG-AHYVLLSNM 559 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 559 (719)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457778888899999999999888876 3344 567888888889999999999999999999999887 444444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.78 E-value=6e-05 Score=76.57 Aligned_cols=152 Identities=10% Similarity=-0.029 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047480 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460 (719)
Q Consensus 381 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 460 (719)
...+..+...|.+.|++++|...|++.....++.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45567788889999999999999998655212221 1223344444433221 136777788888
Q ss_pred ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCChhHHHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-VIWRALLAA-CRLHRNAKIGEI 537 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~-~~~~g~~~~a~~ 537 (719)
+.|++++|...++..++.. +.+...|..+..+|...|++++|.+.|++. ...|+. ..+..+... ....+..+.+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988643 234778888999999999999999999987 455643 445555444 344567788888
Q ss_pred HHHHHhccCCCCc
Q 047480 538 AGQKLLDLEPDHG 550 (719)
Q Consensus 538 ~~~~~~~~~p~~~ 550 (719)
.++++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999998764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00034 Score=73.72 Aligned_cols=97 Identities=16% Similarity=0.017 Sum_probs=68.0
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHc--CC--CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHH--cCCc-c-C-
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELM--GL--KPDG-VTFVTVLCACSHGGLVEEGKQFFESMLN--YGIK-P-Q- 483 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~-p-~- 483 (719)
..++..+...|...|++++|..++++.... +. +|.. .++..+...|...|++++|..++++... ..+. | .
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 345677788888888888888888877642 11 2222 3677788888899999999999888762 1121 1 1
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 484 -MEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 484 -~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
...+..+...+...|++++|...+.+.
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345677777888889999888776654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00014 Score=58.60 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788888889999999999999999999999999999999999999999999999999988753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00021 Score=73.40 Aligned_cols=112 Identities=7% Similarity=-0.055 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~ 528 (719)
..+..+...+.+.|++++|.+.|++.++. .++.. ..-..+++.+ ..| +..+|..+..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK------LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 34566666677777777777777766631 11100 0011111111 223 45678888888999
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=64.29 Aligned_cols=131 Identities=11% Similarity=0.012 Sum_probs=79.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCccC-hh
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGL-KPDG----VTFVTVLCACSHGGLVEEGKQFFESMLNY----GIKPQ-ME 485 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ 485 (719)
++..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|..++++..+. +-.+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666666777777776666554210 0111 25556666677777777777777776521 11111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
.+..+...+...|++++|.+.+++.- ..++ ..++..+...+...|+.++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777777888888777776641 1111 2345666666788888888888888877653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.64 E-value=7.2e-06 Score=82.91 Aligned_cols=421 Identities=10% Similarity=0.049 Sum_probs=233.5
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~ 118 (719)
+.+|+.|-.++.. . |++.+|...|=+. .|...|..+|....+.|.+++-+..+.-.++.. -++..=+.++-+
T Consensus 54 p~VWs~LgkAqL~--~-~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQ--K-GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTT--S-SSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHc--c-CchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHH
Confidence 5688888888888 6 7777777665443 455567788888888888888777665544442 344555678888
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHH
Q 047480 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198 (719)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 198 (719)
|++.+++.+-.+++. .||+.-...+.+-+...|.++.|.-+|..+.. |.-|...+++-|++.+|.+.-
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTT
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 888777655443322 46666666677777777888888777766553 334444455555555554332
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCC-
Q 047480 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMS- 276 (719)
Q Consensus 199 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~- 276 (719)
++ .-+..||-.+-.+|...+.+..|...--.++-.. .-...|+..|.+.|.+++...+++.. |.+
T Consensus 194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-------deL~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-------DELEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-------SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-------HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 11 2345566666666666666655543322222110 01123455566666666666666664 432
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHhcCChhHHHHH-------------
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQ-----------RDLVSWTAMISGYSQVGGFSQALEL------------- 332 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~------------- 332 (719)
.....++-|.-.|+|- +.++-.+-++..-. .....|.-++-.|.+-.+++.|...
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 3455666666666664 23333333322211 2334566677667666666655422
Q ss_pred HHHhHhcCCCCChhH---------------HHHHHHHHHccCChHHHHHHHHH---------HHHHcCCCCChhHHHHHH
Q 047480 333 FGKMESLGIHPDEVT---------------MVAVLRACVGLGALDFGKRLHQQ---------YIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 333 ~~~m~~~g~~p~~~t---------------~~~ll~a~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~li 388 (719)
|++...+ .+|... ++-++.++...=+...+.+++.+ ++....-..+..+..++-
T Consensus 340 Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln 417 (624)
T 3lvg_A 340 FKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLN 417 (624)
T ss_dssp GTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHH
T ss_pred HHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHH
Confidence 1111110 112122 33344444433344444443331 000111123456777888
Q ss_pred HHHHhcCChHHHHHHHhcCCCC----------CCChhcHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKN----------LKTVSLFNS-IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~----------~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
+.|....+++.-+...+....- ..+..-+.. -...|.+++++++++++.++ .++ |.-.+.
T Consensus 418 ~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAie 488 (624)
T 3lvg_A 418 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQ 488 (624)
T ss_dssp HHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGT
T ss_pred HHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHH
Confidence 8888888877665554433320 011222222 23346777788877765432 112 222344
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
..+.+|+.+-+.++++..++.| +.+.|.+.+-.+...=++|-++++-
T Consensus 489 tAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 489 YASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp TTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHHH
Confidence 4667888888888888887644 4455666666666666778777763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00018 Score=56.41 Aligned_cols=81 Identities=22% Similarity=0.195 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777788888888888887765 2233 56677888888888999999999999999999998888888888887
Q ss_pred hcC
Q 047480 562 ETY 564 (719)
Q Consensus 562 ~~g 564 (719)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=3.8e-05 Score=66.84 Aligned_cols=85 Identities=8% Similarity=-0.052 Sum_probs=61.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 496 RDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRN----------AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555544 2223 34445444444444443 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 047480 564 Y-----------RWEEARQVRKLMDDSG 580 (719)
Q Consensus 564 g-----------~~~~A~~~~~~m~~~~ 580 (719)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00047 Score=73.16 Aligned_cols=65 Identities=11% Similarity=-0.026 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46788888889999999999999999999999999999999999999999999999999998754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00017 Score=59.91 Aligned_cols=78 Identities=15% Similarity=0.081 Sum_probs=64.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555544 3344 56788888888999999999999999999999999999999999999999999999999988753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0012 Score=56.81 Aligned_cols=89 Identities=8% Similarity=-0.081 Sum_probs=48.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh---
Q 047480 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE--- 562 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 562 (719)
|..+|...+.+++|.+.|++.-...+...+..|...|.. .++.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 334444444444444444443222344444444444444 45566666666666554 345566677777766
Q ss_pred -cCChHHHHHHHHHHHhCC
Q 047480 563 -TYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 563 -~g~~~~A~~~~~~m~~~~ 580 (719)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 667777777777766655
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00076 Score=53.26 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 513 DANSVIWRALLAACRLHRN---AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 513 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
++|+..|..+..++...++ .++|...++++++++|+++.+...++..+...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467778888777654444 79999999999999999999999999999999999999999999998654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0012 Score=69.98 Aligned_cols=121 Identities=14% Similarity=-0.002 Sum_probs=75.5
Q ss_pred HHhCCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHH-----HcCC-ccC-hhHHHH
Q 047480 424 LAQHGLGETSIAVFREMELM---GLKPDG----VTFVTVLCACSHGGLVEEGKQFFESML-----NYGI-KPQ-MEHYGC 489 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~-----~~g~-~p~-~~~~~~ 489 (719)
+...|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|..++++.+ ..|- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666542 123332 267777777777777777777777665 1221 122 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---------CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 490 MVDLLARDGRLDEAYGLIQSM---------PYDANSVI-WRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~---------~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
|..+|...|++++|+.++++. +..|+... .+.+-.++...+.+++|+..+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877765 23343332 33333445567778888887777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00071 Score=70.65 Aligned_cols=116 Identities=10% Similarity=0.167 Sum_probs=83.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCc---hh
Q 047480 491 VDLLARDGRLDEAYGLIQSM------PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLD-----LEPDHG---AH 552 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 552 (719)
++-+.+.|++++|++++++. ...|+ ..+++.|..+|...|++++|+.+++++++ +.|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677777777777654 12222 23677777788888888888888888875 345544 46
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 624 (719)
+..|+.+|..+|++++|..++++..+.-. ..-...||.+.++...|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998875211 0112369999999988888877775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00072 Score=55.21 Aligned_cols=66 Identities=9% Similarity=-0.085 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+...|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888889999999999999999999999999999999999999999999999999998754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00025 Score=61.68 Aligned_cols=101 Identities=18% Similarity=0.087 Sum_probs=55.8
Q ss_pred HhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcH----------HHHHHHHHHHHHcCCccC-hhHHHHHHH
Q 047480 425 AQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLV----------EEGKQFFESMLNYGIKPQ-MEHYGCMVD 492 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~g~~p~-~~~~~~li~ 492 (719)
.+.+++++|++.+++..+. .| +...|..+..++...+++ ++|+..|++.++ +.|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 3445566666666666653 33 334555555555555443 355555555443 2233 344444444
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+|...|.+ .|+.. .-.|++++|+..|+++++++|++.
T Consensus 89 ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 89 AYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH
Confidence 44444332 22221 012689999999999999999975
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0036 Score=53.75 Aligned_cols=112 Identities=10% Similarity=-0.093 Sum_probs=89.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh----cCCHHHH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR----DGRLDEA 503 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~eA 503 (719)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998877 44443 6666777788889999999998765 56777788888887 8899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 047480 504 YGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 504 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 547 (719)
.+.|++.-...+...+..|...|.. .+|.++|...++++.+...
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999987444577788888888887 7899999999999988744
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0056 Score=66.51 Aligned_cols=151 Identities=13% Similarity=0.019 Sum_probs=120.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHHHHcCCccChhHHHHHHHHHHh
Q 047480 428 GLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGL----------VEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 496 (719)
...++|++.++++.+. .|+.. .|+.--.++.+.|+ ++++.++++.+.+.. +-+...|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3456889999999984 67664 55554455555555 899999999999643 3346778888888889
Q ss_pred cC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc--------
Q 047480 497 DG--RLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHR-NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET-------- 563 (719)
Q Consensus 497 ~g--~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 563 (719)
.| ++++++++++++ ...| |..+|+.-.......| ..+++.+.++++++.+|.+..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 99 779999999998 3334 7889998888888888 899999999999999999999999999988774
Q ss_pred ------CChHHHHHHHHHHHhCCC
Q 047480 564 ------YRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 564 ------g~~~~A~~~~~~m~~~~~ 581 (719)
++++++.+.++.......
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCC
Confidence 567889988888876443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=50.76 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4577778888999999999999999999999999999999999999999999999999998864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0019 Score=67.23 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLD-----LEPDHG---AHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.+++.|..+|...|++++|+.+++++++ +.|++| .++..|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3566677777777777777777777765 344444 4688999999999999999999998875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0044 Score=64.54 Aligned_cols=93 Identities=17% Similarity=0.036 Sum_probs=62.9
Q ss_pred ccCcHHHHHHHHHHHHH---cCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 047480 461 HGGLVEEGKQFFESMLN---YGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSM---------PYDANS-VIWRALL 523 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ll 523 (719)
+.|++++|..++++.++ .-+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677777777776652 112222 456777778888888888887777665 234443 4677788
Q ss_pred HHHHhcCChhHHHHHHHHHhc-----cCCCCchhH
Q 047480 524 AACRLHRNAKIGEIAGQKLLD-----LEPDHGAHY 553 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 553 (719)
..|...|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 888888888888888888876 567766443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0027 Score=52.33 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=37.9
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.+...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+...
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666666666666666666666666653 233 3455555566666666666666666655
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0095 Score=62.09 Aligned_cols=97 Identities=11% Similarity=-0.053 Sum_probs=58.1
Q ss_pred HhccCcHHHHHHHHHHHHHc---CCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 047480 459 CSHGGLVEEGKQFFESMLNY---GIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSM---------PYDANS-VIWRA 521 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ 521 (719)
+...|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++ +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44455666666666655521 11222 345666666666677777776666554 233433 35667
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCchhHHH
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLD-----LEPDHGAHYVL 555 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 555 (719)
|...|...|++++|+.+++++++ +.|++|.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 77777778888888888777765 56777655443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.013 Score=58.51 Aligned_cols=66 Identities=18% Similarity=0.069 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.++.+|..+.-.+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++....+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 35666666665566668888888888888888864 5667778888888888888888887776644
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.029 Score=56.05 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=95.4
Q ss_pred CChhcHHHHHHHHH--hCC---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc----cC----cHHHHHHHHHHHHH
Q 047480 412 KTVSLFNSIISGLA--QHG---LGETSIAVFREMELMGLKPDG-VTFVTVLCACSH----GG----LVEEGKQFFESMLN 477 (719)
Q Consensus 412 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~----~g----~~~~a~~~~~~m~~ 477 (719)
.+...|...+.+.. ..+ ...+|..+|++.++. .|+- ..+..+..++.. .+ ......+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 56777887776643 333 347899999999884 6764 344443333321 10 11111222222221
Q ss_pred -cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 047480 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555 (719)
Q Consensus 478 -~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (719)
..-+.+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|..+ +|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 112445778888887788889999999999988 4568877787777778899999999999999999999864 4444
Q ss_pred HH
Q 047480 556 LS 557 (719)
Q Consensus 556 l~ 557 (719)
.-
T Consensus 349 ~~ 350 (372)
T 3ly7_A 349 IE 350 (372)
T ss_dssp HH
T ss_pred Hh
Confidence 33
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0072 Score=48.30 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=43.4
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.+...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++.+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566777777777777777777777777764 343 3466667777777777777777777666
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.047 Score=62.40 Aligned_cols=130 Identities=11% Similarity=0.049 Sum_probs=83.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCC
Q 047480 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428 (719)
Q Consensus 349 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 428 (719)
..++..+...|..+.|.++.+. + ..-.+....+|+++.|.++.+.+ .+...|..+...+.+.|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~--------~-----~~~f~~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD--------Q-----DQKFELALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC--------H-----HHHHHHHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCC--------c-----chheehhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcC
Confidence 4555555666666666554431 1 11234456788999998887766 45678999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
+++.|.+.|.++.. |..+...+...|+.+...++-+.....| .++.-..+|.+.|++++|++++.
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887753 2234444445667666555555444433 23344455667788888887776
Q ss_pred hC
Q 047480 509 SM 510 (719)
Q Consensus 509 ~~ 510 (719)
++
T Consensus 761 ~~ 762 (814)
T 3mkq_A 761 KS 762 (814)
T ss_dssp HT
T ss_pred Hc
Confidence 65
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0095 Score=47.23 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=56.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 047480 490 MVDLLARDGRLDEAYGLIQSM-PYDA-NSV-IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (719)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677788888888888776 2334 455 77777777888888999999999999998888766522 444
Q ss_pred HHHHHHHHHH
Q 047480 567 EEARQVRKLM 576 (719)
Q Consensus 567 ~~A~~~~~~m 576 (719)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0048 Score=49.02 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=53.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCch-hHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGA-HYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34577889999999999999999999999 99999999999999999999999998754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.025 Score=48.47 Aligned_cols=64 Identities=9% Similarity=-0.036 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 515 NSVIWRALLAACRLHR---NAKIGEIAGQKLLDLE-P-DHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+..+.-.+..++.+.+ +.++|+.+++.+++.+ | ++...+..|+-+|.+.|++++|.++++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444444444 3445555555555555 4 2344555566666666666666666666554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.12 Score=42.51 Aligned_cols=85 Identities=12% Similarity=-0.024 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.+|++.....-+-.+. .+......-++.....|+-+.-.++...++.-+|-+|.....++++|.+.|+..+|.+++++
T Consensus 73 ~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555555553 23444555667778889999999999997777777789999999999999999999999999
Q ss_pred HHhCCCC
Q 047480 576 MDDSGIQ 582 (719)
Q Consensus 576 m~~~~~~ 582 (719)
.-++|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 9999984
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.015 Score=55.52 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=66.4
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-chhHHHHHHHHhhc-CChHHH
Q 047480 501 DEAYGLIQSM-PYDAN---SVIWRALLAACRL-----HRNAKIGEIAGQKLLDLEPDH-GAHYVLLSNMLAET-YRWEEA 569 (719)
Q Consensus 501 ~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 569 (719)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++.++..++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555544 34555 4567777666766 489999999999999999975 99999999999885 999999
Q ss_pred HHHHHHHHhCCCCCCCc
Q 047480 570 RQVRKLMDDSGIQKPPG 586 (719)
Q Consensus 570 ~~~~~~m~~~~~~~~~~ 586 (719)
.+.+++.........|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999999876654454
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.039 Score=47.31 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHHH
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG---RLDEAYGLIQSM-PYD-A--NSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
+..+++-|.+....| .++..+.-.+..++.++. ++++++.++++. ... | +...+-.|.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555554433 255555556666666666 444666666554 112 3 23344555566889999999999
Q ss_pred HHHHHhccCCCCchh
Q 047480 538 AGQKLLDLEPDHGAH 552 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~ 552 (719)
.++++++.+|++..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999987433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.078 Score=42.51 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSMP---------YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
..-+-.|...+.+.|+++.|...++.+- ..+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344456666666777777666665540 1134567888888899999999999999999999999876644
Q ss_pred HH
Q 047480 555 LL 556 (719)
Q Consensus 555 ~l 556 (719)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.20 E-value=1 Score=51.21 Aligned_cols=132 Identities=15% Similarity=0.140 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 047480 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330 (719)
Q Consensus 251 ~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 330 (719)
..++..+.+.|..+.|..+.+ +. ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~ 701 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAI 701 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHH
Confidence 667788888888888876653 11 122445677899999999987764 5678999999999999999999
Q ss_pred HHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 331 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
+.|.++.. |..+...+...++.+....+-. .....|. ++....+|.++|++++|.+++.++..
T Consensus 702 ~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~-~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 702 EAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK-DAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH-HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH-HHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 99998753 3344444555666666555554 4443331 23444556677777777777665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.38 Score=42.24 Aligned_cols=130 Identities=11% Similarity=0.088 Sum_probs=81.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
.+....+|+++.|.++.+.+ .+...|..+......+|+.+-|.+.|.+... |..+.-.|.-.|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34456788888888887765 4567888888888888888888888887543 2334444555677766
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (719)
-..+-+.....| -++.-...+.-.|+++++.+++.+...-|.... ..+.+|..+.|.++.+.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 555544444333 234445556677888888888887653222111 123355556665555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.02 E-value=1.3 Score=38.90 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=57.8
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHH
Q 047480 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368 (719)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 368 (719)
-.++|+++.|.++-+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45567777777666655 3455677777777777777777777766542 233333444455555555444
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
+ .....|- ++.....+.-.|+++++.++|.+...
T Consensus 84 ~-iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 84 N-IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp H-HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred H-HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4 3333331 23333344456667776666655544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=5.1 Score=43.34 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=66.7
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHH
Q 047480 428 GLGETSIAVFREMELMG-LKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 504 (719)
.+.+.|..+|....+.. +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 37788888888876543 222221 2223333344445345566666654432 233333444445555789999999
Q ss_pred HHHHhCCCCC-CHHHHHHH-HHHHHhcCChhHHHHHHHHHhc
Q 047480 505 GLIQSMPYDA-NSVIWRAL-LAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~ 544 (719)
+.|+.|+..+ +..-|.-- ..+....|+.++|..+++++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999986443 22222221 1245667889999998888875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.12 Score=40.35 Aligned_cols=68 Identities=10% Similarity=-0.032 Sum_probs=45.1
Q ss_pred cChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 482 PQMEHYGCMVDLLARDGR---LDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~---~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.+...+..+..++...++ .++|..++++. ...|+ ...+..+...+.+.|++++|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 445666666666654443 57777777765 34453 4455555566777888888888888888888773
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.77 E-value=2.4e-05 Score=79.23 Aligned_cols=264 Identities=13% Similarity=0.154 Sum_probs=174.2
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 356 (719)
..+.+|..|..++.+.|++.+|.+-|- +..|...|..+|....+.|.+++-+..+...++..- ++..=+.++-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 345678888888888888888776653 345666788888888899999988888776665532 3344457888889
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHH
Q 047480 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436 (719)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 436 (719)
+.+++.+-.++.. .|+..-...+.+-+...|.++.|.-+|..+.. |..|...+.+.|++..|.+.
T Consensus 128 k~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-------~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 128 KTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp TSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-------CTTTSSSSSSCSGGGSSTTT
T ss_pred hhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-------HHHHHHHHHHHHHHHHHHHH
Confidence 8888876666555 46666667788888888888888888877765 55566667777777777654
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCC
Q 047480 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDA 514 (719)
Q Consensus 437 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p 514 (719)
-++ .-+..||..+-.+|...+.+.-|.-.--.++ ...+....++..|-+.|.++|-+.+++.. + .+.
T Consensus 193 ArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglErA 261 (624)
T 3lvg_A 193 ARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERA 261 (624)
T ss_dssp TTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC
T ss_pred HHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCch
Confidence 321 2345688888888888887766654443333 12223334667788888888888888765 3 234
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cC-CC------CchhHHHHHHHHhhcCChHHHHH
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLD-LE-PD------HGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
...+++-|.-.|.+.. .++-.+.++.... ++ |. ....|.-+.-.|.+-..|+.|..
T Consensus 262 HmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 262 HMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6667777766666653 3333332222211 11 21 22346667777777777776653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.11 Score=57.30 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=50.1
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
-|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|.-.+..+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 36788999999999999999999999999999999999999999999999984
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.78 E-value=2.4 Score=34.96 Aligned_cols=140 Identities=10% Similarity=0.013 Sum_probs=85.4
Q ss_pred HhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 047480 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 400 (719)
.-.|..++..++..+..... +..-++.++--....-+-+-..++++ .+ |-..| ..+||++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd-~I---GkiFD----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLD-KI---GSYFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHH-HH---GGGSC----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHH-HH---hhhcC----------cHhhhcHHHH
Confidence 33566666666666665431 23333334333333333333333333 11 11112 1245666666
Q ss_pred HHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
...+-.+. .+....+..++.+..+|+-++-.+++..+.. +.+|++.....+.+||.+.|+..++.+++.++-+.|+
T Consensus 81 i~C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 81 VECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 55555544 3444566677888888888888888888644 3577888888888899999999999999988888876
Q ss_pred c
Q 047480 481 K 481 (719)
Q Consensus 481 ~ 481 (719)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.52 Score=38.76 Aligned_cols=86 Identities=14% Similarity=-0.037 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C-CH-HHHHHHHHHHHhcCChhHH
Q 047480 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE---AYGLIQSMP-YD-A-NS-VIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 463 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e---A~~~~~~~~-~~-p-~~-~~~~~ll~~~~~~g~~~~a 535 (719)
..+..+.+-|......|. |+..+--.+..++.++.+..+ ++.++++.- .. | +. ...-.|.-++.+.|+++.|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555555543332 555555556666666665544 555555542 11 2 11 1222233345555666666
Q ss_pred HHHHHHHhccCCCC
Q 047480 536 EIAGQKLLDLEPDH 549 (719)
Q Consensus 536 ~~~~~~~~~~~p~~ 549 (719)
.+.++.+++.+|++
T Consensus 94 ~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 66666666666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.14 Score=49.03 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc-CCHH
Q 047480 431 ETSIAVFREMELMGLKPD---GVTFVTVLCACSHG-----GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD-GRLD 501 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~ 501 (719)
..|..++++.++ +.|+ ...|..+...|.+. |+.++|.+.|++.++.+-.-+..++..+.+.|++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 344444555444 3444 23455555555552 55555555555555422111244444455555442 4555
Q ss_pred HHHHHHHh
Q 047480 502 EAYGLIQS 509 (719)
Q Consensus 502 eA~~~~~~ 509 (719)
+|.+.+++
T Consensus 258 ~a~~~L~k 265 (301)
T 3u64_A 258 GFDEALDR 265 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.38 E-value=2.9 Score=34.94 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhccCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 532 AKIGEIAGQKLLDLEPD-HGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
..+++.+++.++...|. .-.....|+-++.+.|++++|+++.+.+.+
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555555555553 223344555556666666666666665554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.36 E-value=0.95 Score=37.17 Aligned_cols=86 Identities=12% Similarity=0.019 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHHHHcCCcc--ChhHHHHHHHHHHhcCCHHH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE---GKQFFESMLNYGIKP--QMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~e 502 (719)
.....+.+-|.+....|. |+..+--.+..++.++..... |+.+++.+.+.+ .| .....-.|.-++.|.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555666666655553 666666667777888776555 888888887543 23 23444456678889999999
Q ss_pred HHHHHHhC-CCCCC
Q 047480 503 AYGLIQSM-PYDAN 515 (719)
Q Consensus 503 A~~~~~~~-~~~p~ 515 (719)
|.+.++.+ ..+|+
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99988887 45554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.53 Score=37.44 Aligned_cols=65 Identities=12% Similarity=-0.079 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLE-------PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+..-+-.+...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445567777889999999999999998742 334567999999999999999999999998764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.44 E-value=14 Score=35.96 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHH----HHHHHHCCCCCChhhHHHHHHHHh
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL----FRKMQDSCIQPDAFTFVAMFSACT 221 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~a~~ 221 (719)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.++++|.....-++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677778888999999887633 12335566776666654 444556688888887777777765
Q ss_pred ccCCcH-HHHHHHHHHHHhh----CCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 047480 222 ELNDPR-IGKQFHAVVYKNL----GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291 (719)
Q Consensus 222 ~~~~~~-~a~~i~~~~~~~~----~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~ 291 (719)
.....+ .-..+...+++.. +....|+.....+...|.+.|++.+|+..|- .|-..|...+..++--+.+
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHH
Confidence 533211 2233334444321 1122355666666666666666666666665 2322234444444433333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.36 E-value=1.5 Score=37.07 Aligned_cols=53 Identities=6% Similarity=-0.111 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 582 (719)
+|.++|..+|+.++.+...-+..|...+..-.++|+...|++++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 78888888888887764444556777777778899999999999988876543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.65 E-value=27 Score=33.82 Aligned_cols=164 Identities=10% Similarity=0.059 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH----HHHhHhcCCCCChhHHHHHHHHHHccC
Q 047480 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL----FGKMESLGIHPDEVTMVAVLRACVGLG 359 (719)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 359 (719)
++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 444556667777777766432 12334555665554443 333344567777777777766665432
Q ss_pred C--h---HHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhC---CC
Q 047480 360 A--L---DFGKRLHQQYIENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH---GL 429 (719)
Q Consensus 360 ~--~---~~a~~~~~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~---g~ 429 (719)
. . .-...... +..+.+ -..++.....+...|.+.|++.+|+..|-.-.. .+...+..++.-+... |.
T Consensus 107 ~~~~~r~~fi~~ai~-WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~--~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 107 PSEPNLKDVITGMNN-WSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH--DSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TTCTTHHHHHHHHHH-HHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH--HHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCchHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--ccHHHHHHHHHHHHHhcCCCC
Confidence 1 1 12222222 333332 235778888999999999999999998863322 2445555444433333 33
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
..++-- ..-..+| -|.-.|++..|..+|+...
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 333211 1112222 2445688888888888665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.58 E-value=4.3 Score=33.48 Aligned_cols=69 Identities=7% Similarity=0.024 Sum_probs=29.4
Q ss_pred ccChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 481 KPQMEHYGCMVDLLARDGRLD---EAYGLIQSM-PYDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~---eA~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.|+..+--.+..++.++.+.+ +++.++++. ...|. -..+--|.-|+.+.|+++.|.+..+.+++.+|++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 444444444555555554432 233443333 11121 1122233334445555555555555555555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=84.73 E-value=8.5 Score=32.53 Aligned_cols=96 Identities=11% Similarity=0.219 Sum_probs=56.2
Q ss_pred CCCccHHHHHHHHHHcCCCc------hHHHHHHHHhHhCCCCCCCcc----cHHHHHHHH---hccCCcHHHHHHHHHHH
Q 047480 70 NPNIFIWNTLMRGYSRSDSP------QEALVLYTSMLSKGIVSPNNF----TFPFVLNSC---ARLSSFKSGCQIHCHII 136 (719)
Q Consensus 70 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~p~~~----~~~~ll~~~---~~~~~~~~a~~~~~~~~ 136 (719)
..|..+|=..+...-+.|++ ++.+++|++....- ||+.. .|..+.--| ...++++.|+++|..++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~--Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL--PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS--CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC--CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35667888888888888888 88888888877643 25431 121111111 12366777777777776
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHHc
Q 047480 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168 (719)
Q Consensus 137 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 168 (719)
+.+-.. ..+|-.....=.+.|++..|++++.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 553222 4455555555555566666666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.52 E-value=5.2 Score=44.21 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 047480 251 TAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKIERARQLFDQMD 306 (719)
Q Consensus 251 ~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (719)
..-++.+.+.|+++.|+.+.++. .. +.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33356677789999999998888 43 4456789999999999999999999999887
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.45 E-value=38 Score=33.04 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH----HHhHhcCCCCChhHHHHHHHHHHccC
Q 047480 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF----GKMESLGIHPDEVTMVAVLRACVGLG 359 (719)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~~ 359 (719)
++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344446666777777665432 123344555554444433 33344567777776666666665544
Q ss_pred ChHHH-----HHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhH
Q 047480 360 ALDFG-----KRLHQQYIENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 360 ~~~~a-----~~~~~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 432 (719)
.-+-. .+... +-.+.| -.-++.....+...|.+.+++.+|+..|-.-.+ +.+..+..|+.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~-WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~--~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMID-WSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTK--ESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TTCHHHHHHHHHHHH-HHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCT--THHHHHHHHHHHHHHTSCGGG
T ss_pred CCCcHHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCC--chHHHHHHHHHHHHHhcCCcc
Confidence 32211 11222 223333 345677888899999999999999998853222 233555444444333332221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 433 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
+|...-..+| -|...+++..|..+++...
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 1222222333 3455678888887766655
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.92 E-value=11 Score=32.38 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC
Q 047480 488 GCMVDLLARDGRLDEAYGLIQSMPY 512 (719)
Q Consensus 488 ~~li~~~~~~g~~~eA~~~~~~~~~ 512 (719)
--+..+|...|+.++|+.+++.+|.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3355666667777777777776653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.74 E-value=11 Score=29.27 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=46.9
Q ss_pred CchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 88 SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 88 ~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
+.-+..+-++.+...... |++....+.|++|.+.+++..|.++++-+...- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444666677777777787 999999999999999999999999998776443 233456666554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.41 E-value=56 Score=33.60 Aligned_cols=186 Identities=13% Similarity=0.089 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC----C--CC--hhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKN----L--KT--VSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVT 454 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~----~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ 454 (719)
+...+..|...+++..|..++.++... . ++ ...+..++..+...+++.+|...|.+..+. ...-|...+..
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~ 259 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKP 259 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 344556666666776666666554211 1 11 123555666677777787777777666531 11112221111
Q ss_pred H----HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc--CCHHHHHHHHHhCC-CC-------CCHHHHH
Q 047480 455 V----LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD--GRLDEAYGLIQSMP-YD-------ANSVIWR 520 (719)
Q Consensus 455 l----l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~eA~~~~~~~~-~~-------p~~~~~~ 520 (719)
+ +....-++....-..+.........-++...|..++.+|... .+++.+.+.|...- .. ....-|.
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 339 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWE 339 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHH
Confidence 1 111111111111111222222111235677788888888654 35677777665541 11 1123466
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
.|......|+-. ...+ |-+...+..++..+.- ..+++......|...|.
T Consensus 340 ~L~~~v~ehnl~-~i~k---------~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g~ 388 (445)
T 4b4t_P 340 DLQKRVIEHNLR-VISE---------YYSRITLLRLNELLDL--TESQTETYISDLVNQGI 388 (445)
T ss_dssp HHHHHHHHHHHH-HHHH---------HEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH-HHHH---------HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence 665554443311 1111 1112234445554432 45788888888886654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=3.3 Score=42.15 Aligned_cols=68 Identities=16% Similarity=-0.000 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCCCCCc
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD-----SGIQKPPG 586 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 586 (719)
...++.++...|+.+++...+++++..+|-+...|..|..+|.++|+..+|.+.|+...+ .|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344566677889999999999999999999888999999999999999999998888753 47766554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 719 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.95 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.67 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.29 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.22 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.99 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.89 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.85 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.83 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.79 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.76 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.71 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.55 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.54 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.41 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.37 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.32 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.19 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.61 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.52 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.78 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.73 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.11 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.43 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.54 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.14 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.1e-20 Score=189.12 Aligned_cols=369 Identities=11% Similarity=0.096 Sum_probs=253.2
Q ss_pred HcCCCcchHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChH
Q 047480 186 AQVKEPCPALWLFRKMQDSCIQP-DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264 (719)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 264 (719)
.+.|++++|++.|+++.+. .| +...+..+...+...|++++|...+..+++. .|.+..++..+...|.+.|+++
T Consensus 10 ~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHhhhhcccc
Confidence 3444444444444444432 12 2233333444444444455555544444443 2334445555555555555555
Q ss_pred HHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc
Q 047480 265 MAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMD---QRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339 (719)
Q Consensus 265 ~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (719)
+|...+... ..+.+..........+...+....+........ ......+..........+....+...+.+....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 555555554 223333444444444444444444443333222 234445555666667777778888777777665
Q ss_pred CCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHH
Q 047480 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFN 418 (719)
Q Consensus 340 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~ 418 (719)
. +-+...+..+...+...+..+.|...+.+ ..+.. +.+...+..+...|...|++++|...|++.... +.+...|.
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK-AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHH-HHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 2 23455666777778888888888888884 33332 345667788888999999999999998876553 46677788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc
Q 047480 419 SIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497 (719)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 497 (719)
.+...+.+.|++++|++.|++..+. .|+ ..++..+...+...|++++|.+.++...... +.+...+..+...|.+.
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHC
Confidence 8889999999999999999998874 555 4588888889999999999999999888542 45577888899999999
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 498 GRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 498 g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
|++++|++.+++. ...| +..+|..+...+...|++++|+..++++++++|+++.+|..|+.+|.+.|+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999885 5566 456788888889999999999999999999999999999999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.8e-19 Score=183.17 Aligned_cols=353 Identities=13% Similarity=0.114 Sum_probs=289.4
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCH
Q 047480 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKI 295 (719)
Q Consensus 218 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~ 295 (719)
..+.+.|+++.|.+.+..+.+. .|.+..++..+...|.+.|++++|...+++. .. +.+..++..+...|.+.|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3455679999999999999987 5677889999999999999999999999987 33 44567899999999999999
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHH
Q 047480 296 ERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372 (719)
Q Consensus 296 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 372 (719)
++|...+....+ .+...+..........+....+........... .................+....+.....+..
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988764 344445555566666777777777766666543 3344444455556667777777777777343
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 047480 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451 (719)
Q Consensus 373 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 451 (719)
... +.+...+..+...+...|+.++|...+++.... +.+...|..+...+...|++++|+..|++..... ..+...
T Consensus 163 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred ccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 332 355677888899999999999999999876554 4677789999999999999999999999998753 345567
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 047480 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRL 528 (719)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~ 528 (719)
+..+...+.+.|++++|...|+++.+. .|+ ...+..+...|...|++++|++.++.. ..+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 888888999999999999999999874 344 778899999999999999999999887 234467788888889999
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.4e-12 Score=130.64 Aligned_cols=242 Identities=12% Similarity=-0.007 Sum_probs=158.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
.....+.+.|++++|+..|+++.+.. +-+..++..+..++...|+++.|...+.+ ..+.. +.+...+..+...|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~-al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRR-CLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHh-hhccc-ccccccccccccccccc
Confidence 45556777888888888888877652 22345666666666677777777766663 32222 23344555555555555
Q ss_pred CChHHHHHHHhcCCCCCCC-hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKNLKT-VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
|++++|.+.++......|+ ...+........ ..+.......+..+...+...++.+.|.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 5555555555544322111 100000000000 0000001111222334456778888888
Q ss_pred HHHHcC-CccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 474 SMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 474 ~m~~~g-~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
..++.. -.++...+..+...+.+.|++++|+..+++. ...| +..+|..+...+...|++++|...++++++++|+++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 877432 2345677888899999999999999999886 3344 567899999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 551 AHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.++..++.+|.+.|++++|.+.+++..+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=9.1e-12 Score=124.54 Aligned_cols=264 Identities=11% Similarity=0.019 Sum_probs=191.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 284 SMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
.....|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 466778999999999999998864 356789999999999999999999999998763 2356778888889999999
Q ss_pred hHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHH
Q 047480 361 LDFGKRLHQQYIENVVFGRNIF-LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 439 (719)
+++|.+.+. ...... |+.. ......... . ..+.......+..+...+...+|.+.|.+
T Consensus 103 ~~~A~~~~~-~~~~~~--~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILR-DWLRYT--PAYAHLVTPAEEGA-----------------G-GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHH-HHHHTS--TTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchh-hHHHhc--cchHHHHHhhhhhh-----------------h-hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 999999998 444332 2111 100000000 0 01111111222334455667888888888
Q ss_pred HHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH
Q 047480 440 MELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NS 516 (719)
Q Consensus 440 m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~ 516 (719)
..+.. -.++...+..+...+...|++++|...|+...... +-+...|..+...|.+.|++++|.+.+++. ...| +.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 87642 22345677788888999999999999999988643 234778889999999999999999999886 4455 56
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh-----------HHHHHHHHhhcCChHHHH
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH-----------YVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~ 570 (719)
.+|..+..+|...|++++|+..++++++++|++... +..+..++...|+.+.+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 789999999999999999999999999998887653 345666777777776554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=3.7e-08 Score=98.55 Aligned_cols=194 Identities=15% Similarity=0.017 Sum_probs=133.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC-------CC-CC-ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC----CHHH
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIP-------KN-LK-TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP----DGVT 451 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~-------~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t 451 (719)
..+...|...|++..|...+.... .. .+ ....+..+...+...|+++.+...+.+........ ...+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 344455666666666665554422 11 01 12245566677888899999999888877642221 2235
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHH--cCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-----CHHHH
Q 047480 452 FVTVLCACSHGGLVEEGKQFFESMLN--YGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDA-----NSVIW 519 (719)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p-----~~~~~ 519 (719)
+......+...+...++...+..... ...... ...+..+...+...|++++|...+++.. ..| ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 55556667778888888888877662 111111 2345666778889999999999998862 222 23455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhc------cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 520 RALLAACRLHRNAKIGEIAGQKLLD------LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
..+..++...|+.++|...+++++. ..|+...++..++.+|...|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677788999999999999998874 4456667899999999999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=3.2e-08 Score=97.31 Aligned_cols=186 Identities=11% Similarity=0.018 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCCh-hcHHHHHHHHHhCCChhHHHHHHH
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTV-SLFNSIISGLAQHGLGETSIAVFR 438 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 438 (719)
.+.+..+++ ...+...+.+..++...+..+.+.|+++.|..+|+++... +.+. ..|...+....+.|+.+.|.++|+
T Consensus 80 ~~~a~~i~~-ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 80 SDEAANIYE-RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHH-HHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 456677777 4444444556667777788888888888888888876554 2333 368888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCC
Q 047480 439 EMELMGLKPDGVTFVTVLC-ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----PYD 513 (719)
Q Consensus 439 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~ 513 (719)
++.+.+. .+...|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+++.|..+|++. +..
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 8877532 22233333322 234457888888888888853 2334677888888888888888888888875 233
Q ss_pred CC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 514 AN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 514 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
|+ ...|...+.--..+|+.+.+..+.+++.++.|+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 32 3578888877778888888888888888877765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=1.8e-09 Score=108.03 Aligned_cols=260 Identities=12% Similarity=-0.063 Sum_probs=179.4
Q ss_pred CCHHHHHHHHhhcCC--CCh-hhHHHHHHH----------HHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccC
Q 047480 293 GKIERARQLFDQMDQ--RDL-VSWTAMISG----------YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359 (719)
Q Consensus 293 g~~~~A~~~f~~m~~--~~~-~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 359 (719)
+..++|.++++...+ |+. ..|+..-.. +...|++++|+..+++..+.. +-+...+.....++...+
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 334666666666543 332 234332222 233455778888888887753 234555666666665555
Q ss_pred --ChHHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHH
Q 047480 360 --ALDFGKRLHQQYIENVVFGRNIFLTT-AVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 360 --~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 435 (719)
+.+.+...+. .+.... +.+...+. .+...+...+..++|...++..... +.+..+|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~-~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCA-RFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHH-HHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 4678888887 443333 23444443 4456777889999999999988876 6788899999999999999988877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 047480 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA 514 (719)
Q Consensus 436 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p 514 (719)
.+++..+. .|+.. .+...+...+..+++...+....... +++...+..+...+...|+.++|.+.+.+. +..|
T Consensus 200 ~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 200 QGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp CCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 66554442 23222 22233445566677788887777533 344566677788888899999999998876 4555
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 515 -NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 515 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
+..+|..+...+...|+.++|...++++++++|++...|..|...+.
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 44577888888999999999999999999999998888888877765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=3.7e-09 Score=104.36 Aligned_cols=190 Identities=8% Similarity=0.036 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG-LGETSIAVFREMELMGLKPDG-VTFVTVLCACSH 461 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 461 (719)
+-+...+.+.+..++|.+.++++.+. |.+...|+.....+...| ++++|++.+++..+. .|+. .+|..+...+..
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHHHh
Confidence 34444555666666666666665543 445556666666666554 366666666666653 3443 466666666666
Q ss_pred cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC------hh
Q 047480 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRN------AK 533 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~------~~ 533 (719)
.|++++|++.++.+++.. +.+...|..+..++.+.|++++|++.++++ ...| +...|+.+...+...+. .+
T Consensus 125 l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~ 203 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 203 (315)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred hccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhH
Confidence 666666666666666422 223556666666666666666666666665 3333 44556555444433333 45
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+|...+.++++++|++...+..++.++...| .+++.+.++...+
T Consensus 204 ~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 204 REVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred HhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 6667777777777777777766666665443 4556666655554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=3.1e-07 Score=91.58 Aligned_cols=196 Identities=10% Similarity=0.013 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-------CC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC----CCCh
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ-------RD----LVSWTAMISGYSQVGGFSQALELFGKMESLGI----HPDE 345 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~ 345 (719)
.+..+...|...|++..|...+..... +. ...+..+...+...|+++.+...+........ ....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 344444555556665555555544321 11 11334445566666777777766666654211 1122
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CC----Chh
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR-----NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LK----TVS 415 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~----~~~ 415 (719)
.++......+...+....+...+.+......-.. ....+..+...+...|+.++|...+...... +. ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 2333344444555555555555542221111000 1123344455566666666666666655433 11 122
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMEL----MGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.+..+...+...|++++|...+++... .+..|+. .++..+...+...|++++|.+.+++..
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455566666666666666665542 2333333 244455555666666666666665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=4.2e-08 Score=96.53 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=117.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDE-VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
.|+.+...+.+.+.+++|+++++++++. .|+. ..|.....++...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~------------------------------ 92 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQK------------------------------ 92 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCc------------------------------
Confidence 4555555666667777777777777664 3433 333433334443332
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHH
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 468 (719)
++++|...++..... +.+..+|+.+...+...|++++|++.++++.+. .|+ ...|..+...+.+.|++++|
T Consensus 93 -----~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 93 -----DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp -----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred -----CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHH
Confidence 244444444443322 345556666666666666666666666666653 333 34666666666666666666
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGR------LDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQ 540 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (719)
.+.++.+++.. +-+...|+.+..++.+.+. +++|++.+.++ ...| +...|..+...+.. ...+++...++
T Consensus 166 l~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~ 243 (315)
T d2h6fa1 166 LQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHH
T ss_pred HHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHH
Confidence 66666666432 1224455555555554443 46676666654 3344 56677766555443 44577778888
Q ss_pred HHhccCCCCc--hhHHHHHHHHhh
Q 047480 541 KLLDLEPDHG--AHYVLLSNMLAE 562 (719)
Q Consensus 541 ~~~~~~p~~~--~~~~~l~~~~~~ 562 (719)
++.++.|+.. ..+..++..|..
T Consensus 244 ~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 244 QLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHH
Confidence 8888777643 344556666643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=5.5e-09 Score=100.02 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC
Q 047480 386 AVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGG 463 (719)
Q Consensus 386 ~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 463 (719)
.+...|.+.|++++|...|++.... |.++.+|+.+..+|.+.|++++|++.|++..+. .|+ ..++..+..++...|
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g 119 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGG 119 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHh
Confidence 3444555555555555555554433 345555555666666666666666666655553 333 234555555555566
Q ss_pred cHHHHHHHHHHHHH
Q 047480 464 LVEEGKQFFESMLN 477 (719)
Q Consensus 464 ~~~~a~~~~~~m~~ 477 (719)
++++|...|+..++
T Consensus 120 ~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 120 RDKLAQDDLLAFYQ 133 (259)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 66666666655553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=2e-07 Score=91.38 Aligned_cols=185 Identities=8% Similarity=-0.002 Sum_probs=145.5
Q ss_pred cCChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 047480 394 CGSIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
.+..++|..+|++.... +.+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+++.|+++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 34567888888876543 4567789999999999999999999999998753222244788999999999999999999
Q ss_pred HHHHHHcCCccChhHHHHHHHH-HHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 472 FESMLNYGIKPQMEHYGCMVDL-LARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
|+.+++.+ +.+...|...... +...|+.+.|..+|+.+- .+.+...|..++......|+.+.|..+|+++++..|.
T Consensus 157 ~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 157 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99998644 2334455444444 344689999999999872 2336789999999999999999999999999998775
Q ss_pred Cch----hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 549 HGA----HYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 549 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++. .|...+..-...|+.+.+.++.+.+.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 5677777778889999999999988764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=1.5e-07 Score=89.53 Aligned_cols=222 Identities=7% Similarity=-0.110 Sum_probs=137.9
Q ss_pred hhHHHHHHHHhHhcCC-CC--ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047480 326 FSQALELFGKMESLGI-HP--DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402 (719)
Q Consensus 326 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 402 (719)
.+.++.-+.+...... .+ ...++..+..++.+.|++++|.+.|.+ ..+.. +.++.+++.+..+|.+.|++++|..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~-al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ-ALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-hhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3455555555554311 11 123455556667777777777777773 33332 3566777888888888888888888
Q ss_pred HHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 403 VFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 403 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
.|+++... +.+..+|..+...|...|++++|++.|++..+. .|+ ......+..++.+.+..+....+.......
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-- 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--
Confidence 88887654 456778888999999999999999999998875 344 334334444455556555555555555442
Q ss_pred ccChhHHHHHHHHHHhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 481 KPQMEHYGCMVDLLARDGR----LDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~----~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
.++...++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|+.++|...++++++.+|++...|.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 23333332 2233322222 22222222111 11222 246667777899999999999999999999998865543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.67 E-value=1.9e-08 Score=100.28 Aligned_cols=253 Identities=9% Similarity=-0.103 Sum_probs=166.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhH-HH---HHHHHHHc-------cCChHHHHHHHHHHHHHcCCCCChhHH
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVT-MV---AVLRACVG-------LGALDFGKRLHQQYIENVVFGRNIFLT 384 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~---~ll~a~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (719)
++......+..++|++++++..+. .|+..+ |+ .++..... .+.++++..+++ .+.+.. +.+...+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~-~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE-SCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH-HHHHHC-TTCHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HHHHhC-CCcHHHH
Confidence 333333444468999999999875 566544 22 22233222 334567777777 333332 3455666
Q ss_pred HHHHHHHHhcC--ChHHHHHHHhcCCCC-CCChhcHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 047480 385 TAVIDMYAKCG--SIDTALSVFYKIPKN-LKTVSLFNSI-ISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCAC 459 (719)
Q Consensus 385 ~~li~~y~k~g--~~~~A~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 459 (719)
..+...+...+ ++++|...+.++... +++...|... ...+...|.+++|+..+++..+. .|+ ...|..+...+
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 66666666655 467888777776543 3556666544 35666778888888888877764 444 45677777777
Q ss_pred hccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
...|++++|...++...+. .|+ ...+...+...+..+++...+... ...++...+..+...+...++.++|..
T Consensus 189 ~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 7777777665555443321 111 112233445556666666666554 222344456666667778899999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.+.+..+.+|++..++..++.+|...|++++|.+.+++..+.
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=4.2e-07 Score=82.65 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=65.6
Q ss_pred cChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
|+...+......|.+.|++++|++.|+++ ...| +...|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44555555566666777777777766654 3333 455666666667777777777777777777777777777777777
Q ss_pred HhhcCChHHHHHHHHHHHh
Q 047480 560 LAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m~~ 578 (719)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.5e-06 Score=70.90 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=65.0
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 533 (719)
...+...|++++|...|++.++.. +.+...|..+..+|...|++++|+..+++. ...| +...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 344556666666766666666432 223556666666666677777776666665 2223 5556666666677777777
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 534 IGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
+|+..++++++++|+++..+..+.++-
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 777777777777777766666555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=5.7e-06 Score=74.09 Aligned_cols=139 Identities=9% Similarity=-0.059 Sum_probs=95.7
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 466 (719)
...+...|+++.|.+.|.++.+ ++...|..+...|...|++++|++.|++.++. .|+ ...|..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHH
Confidence 3456778889999998888877 78888888888888899999999999888874 454 457788888888888888
Q ss_pred HHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 467 EGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLIQSMPYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
+|...|++.+... +.+. ..|. ..| ...+++ ..++..+..++...|++++|...++++++
T Consensus 88 ~A~~~~~kAl~~~-~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 88 LAIKDLKEALIQL-RGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-ccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888876431 1111 0000 000 000111 12344555667778888888888888888
Q ss_pred cCCCC
Q 047480 545 LEPDH 549 (719)
Q Consensus 545 ~~p~~ 549 (719)
+.|+.
T Consensus 149 ~~~~~ 153 (192)
T d1hh8a_ 149 MKSEP 153 (192)
T ss_dssp TCCSG
T ss_pred cCCCc
Confidence 87764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=7.4e-07 Score=72.77 Aligned_cols=91 Identities=23% Similarity=0.220 Sum_probs=82.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 047480 490 MVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (719)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 467788999999999999987 3444 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 047480 568 EARQVRKLMDDSG 580 (719)
Q Consensus 568 ~A~~~~~~m~~~~ 580 (719)
+|...++...+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=4.7e-06 Score=80.42 Aligned_cols=191 Identities=10% Similarity=-0.045 Sum_probs=129.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---CCC----hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHHHH
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN---LKT----VSLFNSIISGLAQHGLGETSIAVFREMELMGL---KPD--GVTFVT 454 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ 454 (719)
..++|..+|++++|.+.|.+..+. ..+ ..+|+.+...|.+.|++++|++.+++..+.-. .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 466788899999999888775432 112 34788999999999999999999997765211 111 235666
Q ss_pred HHHHHh-ccCcHHHHHHHHHHHHH----cCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-------H-HHH
Q 047480 455 VLCACS-HGGLVEEGKQFFESMLN----YGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDAN-------S-VIW 519 (719)
Q Consensus 455 ll~a~~-~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~-------~-~~~ 519 (719)
+...|. ..|++++|.+.+++..+ .+-.+. ..++..+...|...|++++|.+.++++. ..|+ . ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 46999999999998863 222222 4567888999999999999999998861 1111 1 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchh-----HHHHHHHHhh--cCChHHHHHHHHHHH
Q 047480 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH-----YVLLSNMLAE--TYRWEEARQVRKLMD 577 (719)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~m~ 577 (719)
...+-.+...|+.+.|...++++.+++|..+.+ ...++.++.. .+++++|...++.+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334445677899999999999999999864432 3445556544 356888888776543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=6.1e-07 Score=72.60 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 047480 489 CMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (719)
.+...+.+.|++++|+..+++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..++..|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4567788899999999999887 3445 5778998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 047480 567 EEARQVRKLM 576 (719)
Q Consensus 567 ~~A~~~~~~m 576 (719)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=3.5e-06 Score=73.04 Aligned_cols=117 Identities=10% Similarity=0.003 Sum_probs=91.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNA 532 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 532 (719)
....|.+.|++++|...|+++++.. +-+...|..+..+|...|++++|++.|+++ ...| +..+|..+..++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456778888888888888888643 334778888888999999999999988877 3445 557888888999999999
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHH--hhcCChHHHHHH
Q 047480 533 KIGEIAGQKLLDLEPDHGAHYVLLSNML--AETYRWEEARQV 572 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 572 (719)
++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988877776554 344556666543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=1.2e-06 Score=79.52 Aligned_cols=115 Identities=8% Similarity=-0.097 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047480 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLA 524 (719)
Q Consensus 447 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 524 (719)
|+...+......+.+.|++++|+..|+++++.. +.+...|..+..+|.+.|++++|++.+++. ...| +..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 555666666677777777777777777777532 233667777777788888888888877776 4556 4557777777
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (719)
++...|++++|+..++++++++|++...+...+..+..
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 78888888888888888888777655444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.2e-06 Score=74.38 Aligned_cols=92 Identities=7% Similarity=-0.030 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 047480 489 CMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (719)
.....|.+.|++++|+..|++. ...| +...|..+...+...|++++|...++++++++|+++.+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3466788999999999999987 3445 6778989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 047480 567 EEARQVRKLMDDSG 580 (719)
Q Consensus 567 ~~A~~~~~~m~~~~ 580 (719)
++|.+.+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988743
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.3e-06 Score=69.97 Aligned_cols=107 Identities=14% Similarity=-0.039 Sum_probs=83.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL---DEAYGLIQSM-PYDANS---VIWRALLAA 525 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~eA~~~~~~~-~~~p~~---~~~~~ll~~ 525 (719)
..+++.+...+++++|.+.|+..+..+ +.+..++..+..++.+.++. ++|+++++++ ...|+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356777888889999999999998644 34578888888888876554 4689999886 344433 367778888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
|...|++++|+..++++++++|++..+...+..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 99999999999999999999999877665554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.2e-06 Score=75.01 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=81.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH
Q 047480 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (719)
...+...|++++|++.|+++. +|+..+|..+...+...|++++|+..|+++++++|+++.+|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 556788999999999999874 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 047480 571 QVRKLMDDS 579 (719)
Q Consensus 571 ~~~~~m~~~ 579 (719)
+.+++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=3.6e-05 Score=74.02 Aligned_cols=203 Identities=11% Similarity=0.025 Sum_probs=109.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhc----CCCCC-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 316 MISGYSQVGGFSQALELFGKMESL----GIHPD-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
....|...|++++|++.|.+..+. +-+++ ..+|..+..++.+.|++++|...+.+ .+..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~----------------a~~~ 106 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN----------------AIQI 106 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH----------------hhHH
Confidence 355667777777777777766542 11111 23445555555555666655555541 1111
Q ss_pred HHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHH-hCCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHhccCc
Q 047480 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA-QHGLGETSIAVFREMEL----MGLKPD-GVTFVTVLCACSHGGL 464 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~ 464 (719)
+.+.|+...+ ...+..+...|. ..|++++|++.|++..+ .+..+. ..++..+...+...|+
T Consensus 107 ~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~ 173 (290)
T d1qqea_ 107 FTHRGQFRRG-------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (290)
T ss_dssp HHHTTCHHHH-------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhcccchhH-------------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence 2222222222 123444444553 35777777777776643 121121 1356667777888888
Q ss_pred HHHHHHHHHHHHHcCCccCh------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhc--
Q 047480 465 VEEGKQFFESMLNYGIKPQM------EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN------SVIWRALLAACRLH-- 529 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~------~~~~~~ll~~~~~~-- 529 (719)
+++|.++|+++......... ..+..++..+...|+++.|.+.+++. ...|. ......++.++...
T Consensus 174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~ 253 (290)
T d1qqea_ 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (290)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCH
Confidence 88888888887743211111 12344455666778888888888876 23332 22345556665442
Q ss_pred CChhHHHHHHHHHhccCC
Q 047480 530 RNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p 547 (719)
+.+++|...++++.+++|
T Consensus 254 e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 254 EQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp TTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHhhcCH
Confidence 346677777777666665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=2.4e-05 Score=68.30 Aligned_cols=133 Identities=11% Similarity=0.002 Sum_probs=94.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 495 (719)
.+......+.+.|++++|+..|++.++.- |.... ..+.-......+ ....|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccc------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 44555667778888888888888777531 11000 000000000011 1235677888999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 047480 496 RDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (719)
+.|++++|+..+++. ...| ++..|..+..++...|++++|+..++++++++|+++.+...+..+..+.+...+.
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886 4455 6778888889999999999999999999999999999999998888766655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=3.2e-05 Score=67.53 Aligned_cols=64 Identities=11% Similarity=-0.064 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3566677778999999999999999999999999999999999999999999999999998743
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.99 E-value=5.4e-05 Score=64.62 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.+|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677778899999999999999999999999999999999999999999999999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.3e-05 Score=65.44 Aligned_cols=93 Identities=11% Similarity=-0.037 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCC--chhHHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL---HRNAKIGEIAGQKLLDLEPDH--GAHYVLLSNM 559 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 559 (719)
...+++.+...+++++|++.|++. ...| +..++..+..++.+ .++.++|+..++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456788889999999999999987 4444 56777777777765 345668999999999998765 3478899999
Q ss_pred HhhcCChHHHHHHHHHHHhC
Q 047480 560 LAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m~~~ 579 (719)
|.+.|++++|.+.++++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999874
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.89 E-value=4.8e-05 Score=66.27 Aligned_cols=65 Identities=8% Similarity=-0.080 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34467777777889999999999999999999999999999999999999999999999998874
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=5e-05 Score=66.18 Aligned_cols=131 Identities=8% Similarity=-0.012 Sum_probs=92.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLA 495 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~ 495 (719)
+......+...|++++|++.|.+.++. +..........+ ...+.| ....|..+..+|.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~---------~~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDAD---------GAKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHH---------HGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHH---------HHHhChhhHHHHHHHHHHHH
Confidence 344455677788888888888776541 000000000000 001223 3556778889999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 496 RDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..+..++.+.....+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 5556 567899999999999999999999999999999999888888877755444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.85 E-value=0.0013 Score=61.66 Aligned_cols=227 Identities=11% Similarity=-0.038 Sum_probs=129.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc----cCChHHHHHHHHHHHHHcCCCCChhHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGKRLHQQYIENVVFGRNIFLT 384 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (719)
|+..+..+...+.+.+++++|++.|++..+.| +...+..+-..+.. ..+...+...+. ...+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~-~a~~~~-------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYA-KACDLN-------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH-HHHHTT--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhc-cccccc--------
Confidence 34566777777788888899999888887766 33344344444433 334555555555 333222
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ----HGLGETSIAVFREMELMGLKPDGVTFVTVLCA-- 458 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-- 458 (719)
+...+..+...+.. ..+.+.|...+++..+.|..+.... ......
T Consensus 69 ----------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~-l~~~~~~~ 119 (265)
T d1ouva_ 69 ----------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCAS-LGGIYHDG 119 (265)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHC
T ss_pred ----------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHh-hcccccCC
Confidence 22222222222221 3345566666666655442111111 111111
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR----DGRLDEAYGLIQSMPYDANSVIWRALLAACRL----HR 530 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g 530 (719)
.........+...+...... .+...+..|...|.. ..+...+...++......+...+..|...+.. ..
T Consensus 120 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 120 KVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 12234456666666655542 244555556666654 34556666666655333455555555544443 46
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 047480 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE----TYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 581 (719)
+.+.|+..++++.+.. ++.++..|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 7889999999988774 46788889998875 3478889999999887764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.83 E-value=0.00013 Score=63.24 Aligned_cols=93 Identities=13% Similarity=0.001 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (719)
..|..+..+|.+.|++++|+..+++. ...| +..+|..+..++...|++++|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666788899999999999999886 3334 677888889999999999999999999999999999998888888777
Q ss_pred cCChHH-HHHHHHHHH
Q 047480 563 TYRWEE-ARQVRKLMD 577 (719)
Q Consensus 563 ~g~~~~-A~~~~~~m~ 577 (719)
.+...+ ..+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 665543 445555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=2.8e-05 Score=64.20 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch-------hHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA-------HYVLLS 557 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 557 (719)
+..+.+.|.+.|++++|++.|++. ...| +..+|..+..++...|+++.|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677888889999999988876 3344 5778888888899999999999999999999888765 455677
Q ss_pred HHHhhcCChHHHHHHHHHHHh
Q 047480 558 NMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~m~~ 578 (719)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999988654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.79 E-value=0.0002 Score=62.07 Aligned_cols=62 Identities=11% Similarity=-0.018 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++.+.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566677899999999999999999999999999999999999999999999999998864
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.76 E-value=0.00015 Score=61.66 Aligned_cols=127 Identities=8% Similarity=-0.141 Sum_probs=91.1
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHH
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 494 (719)
..+......+.+.|++.+|+..|.+.+..- |... ...-........ .....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~-------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKK-------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhh-------hHHHHHHhhHHHHH
Confidence 456667778888899999999888887631 1100 000000000000 11234677788999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 495 ARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
.+.|++++|++.++++ ...| +..+|..+..++...|++++|+..++++++++|+++.+...+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999886 4455 67799999999999999999999999999999999888776665543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.71 E-value=0.016 Score=55.29 Aligned_cols=134 Identities=10% Similarity=-0.021 Sum_probs=62.1
Q ss_pred CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHH
Q 047480 71 PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150 (719)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 150 (719)
||..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.+++..|.++.... .+..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 454444456666667777777777776542 1555666666666666665554322 244566666
Q ss_pred HHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 047480 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222 (719)
Q Consensus 151 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 222 (719)
...+.+.....-|.-. ......+...-..++..|-..|.+++.+.+++..... -.++...++-++..+++
T Consensus 76 ~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred HHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 6666655544443221 1111223334455666666666666666666654321 13344445555555554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.66 E-value=0.012 Score=54.56 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHhHhcCCCCChhHHHHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ-RDLVSWTAMISGYSQ----VGGFSQALELFGKMESLGIHPDEVTMVAVL 352 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 352 (719)
|+..+..|...+.+.|++++|.+.|++..+ .|..++..|...|.. ..+...|...+......+. ......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 466778888888999999999999998754 566677777777766 5678889988888877652 22222332
Q ss_pred HHHH----ccCChHHHHHHHHHHHHHcC
Q 047480 353 RACV----GLGALDFGKRLHQQYIENVV 376 (719)
Q Consensus 353 ~a~~----~~~~~~~a~~~~~~~~~~~~ 376 (719)
..+. ...+.+.+...+. ...+.+
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~-~a~~~g 104 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYS-KACDLK 104 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHH-HHHHTT
T ss_pred cccccccccchhhHHHHHHHh-hhhhhh
Confidence 2222 2456667777776 444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=0.0002 Score=62.55 Aligned_cols=118 Identities=14% Similarity=-0.014 Sum_probs=82.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 047480 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL-DEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 532 (719)
.........|++++|.+.|...+.. .+.... .+ +....-. .++.. ++. -....|..+...+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l----~~-~~~~~w~~~~r~~-l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE--WRGPVL----DD-LRDFQFVEPFATA-LVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT----GG-GTTSTTHHHHHHH-HHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc----cc-CcchHHHHHHHHH-HHH----HHHHHHHHHHHHHHHCCCc
Confidence 3345677889999999999888842 111100 00 0000000 11111 111 0234677888889999999
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCCC
Q 047480 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD-----SGIQK 583 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~ 583 (719)
++|...++++++++|.+...|..++.+|...|++++|.+.|+.+.. .|+.|
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999853 46654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.55 E-value=0.00013 Score=58.20 Aligned_cols=91 Identities=11% Similarity=-0.087 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047480 76 WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS 155 (719)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 155 (719)
+-.+...+.+.|++.+|+..|++..+.. |-+..+|..+..++.+.+++++|...+..+++.. +.+..++..|...|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 4455667777888888888888887766 2345677777777778888888888888887776 456677777777777
Q ss_pred hcCChhHHHHHHcc
Q 047480 156 IFGYINNAHKVFEG 169 (719)
Q Consensus 156 ~~g~~~~A~~~f~~ 169 (719)
..|++++|.+.|++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 77888777777764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.54 E-value=0.029 Score=53.49 Aligned_cols=277 Identities=14% Similarity=0.081 Sum_probs=127.5
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~l 253 (719)
|..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.+++..+.+... +. .+..+|..+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~---k~-----~~~~~~k~~ 75 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR---KA-----NSTRTWKEV 75 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHH---HH-----TCHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHH---Hc-----CCHHHHHHH
Confidence 333334455556667777777777765543 5556666666666655544432 22 233445555
Q ss_pred HHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHH
Q 047480 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD---QRDLVSWTAMISGYSQVGGFSQAL 330 (719)
Q Consensus 254 i~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 330 (719)
...+.+.....-+.-. ......++.....++..|-..|.+++...+++... ..+...++.++..|++.+ .++.+
T Consensus 76 ~~~l~~~~e~~la~i~--~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC--GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHHHHTTCHHHHHHT--TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHhCcHHHHHHHH--HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHH
Confidence 5555544444332111 11222333344455566666666666665555432 234444555555555543 22322
Q ss_pred HHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 047480 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410 (719)
Q Consensus 331 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 410 (719)
+.++..- +..-...++..|.+.+ .|.-++-.|.+.|++++|..+.-.-+
T Consensus 153 e~l~~~s------~~y~~~k~~~~c~~~~-----------------------l~~elv~Ly~~~~~~~~A~~~~i~~~-- 201 (336)
T d1b89a_ 153 EHLELFW------SRVNIPKVLRAAEQAH-----------------------LWAELVFLYDKYEEYDNAIITMMNHP-- 201 (336)
T ss_dssp HHHHHHS------TTSCHHHHHHHHHTTT-----------------------CHHHHHHHHHHTTCHHHHHHHHHHST--
T ss_pred HHHHhcc------ccCCHHHHHHHHHHcC-----------------------ChHHHHHHHHhcCCHHHHHHHHHHcc--
Confidence 2222210 0111112223332222 23445666777777777766654432
Q ss_pred CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------------cCcHHHHHHHHHHHHH
Q 047480 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH-------------GGLVEEGKQFFESMLN 477 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------------~g~~~~a~~~~~~m~~ 477 (719)
+++......+..+.+.++++...++.....+. .|+. .+.+|..... .+++.-...+++....
T Consensus 202 -~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~ 276 (336)
T d1b89a_ 202 -TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN 276 (336)
T ss_dssp -TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred -hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 23333455566677777776666665555442 3432 2334433333 3344444444444333
Q ss_pred cCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 478 ~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
.| +....++|.+.|...++++.-.+.+++
T Consensus 277 ~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 277 HN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp TC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 33 235667777777777776665555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=1.1e-05 Score=84.25 Aligned_cols=111 Identities=9% Similarity=-0.059 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 527 (719)
..+..+...+.+.|+.++|...+...... .| ...+..+.+++...|++++|...+++. ...| +...|+.|...+.
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ----------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 35555666666677777777666655431 11 245666777777777777777777765 3444 3456777777777
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
..|+..+|...+.+++..+|+.+.++..|..++.+.
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 777777777777777777777777777776666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.41 E-value=9.6e-05 Score=62.28 Aligned_cols=126 Identities=16% Similarity=0.059 Sum_probs=72.7
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc----------CcHHHHHHHHHHHHHcCCccC-hhHHHHHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHG----------GLVEEGKQFFESMLNYGIKPQ-MEHYGCMV 491 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~g~~p~-~~~~~~li 491 (719)
|-+.+.+++|+..|++..+. .|+. .++..+..++... +.+++|...|+++++. .|+ ...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence 44556677777777777764 4544 3555555555432 3345566666666542 233 44555555
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 492 ~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
.+|...|++. ++... ..++++.|...++++++++|++..++..|.... .|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHH
Confidence 5554443221 11111 113468899999999999999987776666554 4555
Q ss_pred HHHHHHhCCC
Q 047480 572 VRKLMDDSGI 581 (719)
Q Consensus 572 ~~~~m~~~~~ 581 (719)
++.+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 5555555553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.37 E-value=0.00028 Score=60.18 Aligned_cols=88 Identities=17% Similarity=-0.049 Sum_probs=59.4
Q ss_pred HHHHhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC-------CC-
Q 047480 492 DLLARDGRLDEAYGLIQSM----PYDAN----------SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP-------DH- 549 (719)
Q Consensus 492 ~~~~~~g~~~eA~~~~~~~----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-------~~- 549 (719)
..+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++++++.| +.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666665555544 11111 34566777777788888888887777776433 21
Q ss_pred ---chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 550 ---GAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 550 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..++..++.+|...|++++|.+.+++..+.
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 225778999999999999999999998753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.33 E-value=7.5e-05 Score=62.96 Aligned_cols=50 Identities=12% Similarity=0.035 Sum_probs=43.4
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC-----------hHHHHHHHHHHHhC
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR-----------WEEARQVRKLMDDS 579 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~ 579 (719)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.+++..+.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 456889999999999999999999999999988764 68888888888764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00074 Score=55.18 Aligned_cols=92 Identities=7% Similarity=0.091 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc-cC-----hhHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK-PQ-----MEHYGCM 490 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~-----~~~~~~l 490 (719)
+..+...|.+.|++++|+..|.+.++.. +.+...+..+..+|.+.|++++|.+.++.+++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4445566667777777777777776642 223456666666777777777777777766631100 00 1234445
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 047480 491 VDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~ 509 (719)
...+...+++++|++.+++
T Consensus 86 g~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5555555666666665554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=8.3e-05 Score=77.36 Aligned_cols=128 Identities=8% Similarity=-0.082 Sum_probs=53.9
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
+.++.|...+...... +++...|..+...+.+.|+.++|...+.+.... .| ..++..+...+...|++++|...|+
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3344444444443322 234445555666666666666666655544431 11 2355556666666666666666666
Q ss_pred HHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 047480 474 SMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACR 527 (719)
Q Consensus 474 ~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~ 527 (719)
+..+. .|+ ...|+.|..+|...|+..+|...|.+. ..+|...++..|...+.
T Consensus 177 ~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 177 HAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 66642 344 456666666666666666666666654 22345556666655543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00068 Score=51.97 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM----P----YDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
+--+...+.+.|++++|.+.|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345667777777777777777654 1 1122 457888888999999999999999999999999988877765
Q ss_pred HH
Q 047480 558 NM 559 (719)
Q Consensus 558 ~~ 559 (719)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.03 E-value=0.00076 Score=62.83 Aligned_cols=122 Identities=7% Similarity=0.025 Sum_probs=63.1
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEA 503 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA 503 (719)
+.|++++|++.+++.++. .|+ ...+..+...++..|++++|.+.++...+. .|+ ...+..+..++...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 456666777776666664 343 346666666666667777777666666642 343 33444444444444444333
Q ss_pred HHHHHhC--CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 504 YGLIQSM--PYDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 504 ~~~~~~~--~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
..-.... ..+|+. ..+......+...|+.++|...++++.++.|+.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 2222211 112211 22222233355566666666666666666665543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.83 E-value=0.00054 Score=63.88 Aligned_cols=121 Identities=9% Similarity=0.042 Sum_probs=86.1
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-VIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~ 536 (719)
..+.|++++|...+++.++.. +-+...+..+..+|++.|++++|.+.++.. ...|+. ..+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 346799999999999999754 345889999999999999999999999987 455654 45555544444333333332
Q ss_pred HHHHHHh-ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 537 IAGQKLL-DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 537 ~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
....+.. ..+|+....+...+..+...|+.++|.+.++.+.+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2211111 1245444566677888999999999999999988754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.0095 Score=51.43 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=56.2
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HcCCccChhHH
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESML-----NYGIKPQMEHY 487 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~ 487 (719)
...+..+...+...|++++|+..++++.+. .| +...|..++.++...|+.++|.+.|+.+. +.|+.|...+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 345777888888888888888888888874 44 45688888888888888888888888764 46888876653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.61 E-value=0.007 Score=51.01 Aligned_cols=64 Identities=11% Similarity=-0.018 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM--------PYDAN-----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.|+.+..+|...|++++|.+.+++. ...++ ..++..+..++...|++++|+..+++++++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3444555555555555555444432 11121 1245566677888888888888888888876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0051 Score=46.77 Aligned_cols=62 Identities=11% Similarity=-0.084 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDH-------GAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+-.+...+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|...++++.+..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 4456677889999999999999999875543 3568899999999999999999999998743
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=1.1 Score=44.40 Aligned_cols=79 Identities=10% Similarity=0.099 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHH-HHHHHHhcCChhHHHHHHH
Q 047480 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS-VIWRA-LLAACRLHRNAKIGEIAGQ 540 (719)
Q Consensus 463 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~-~~~~~-ll~~~~~~g~~~~a~~~~~ 540 (719)
+..+.+...+......+ .+.......+....+.+++..+...++.++..|.. .-|.- +..+....|+.+.|...+.
T Consensus 266 ~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 266 DVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp TCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 44444544444443322 22222223333344455555555555555432211 11111 1233445555555555555
Q ss_pred HHh
Q 047480 541 KLL 543 (719)
Q Consensus 541 ~~~ 543 (719)
.+-
T Consensus 344 ~~a 346 (450)
T d1qsaa1 344 QLM 346 (450)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.73 E-value=0.15 Score=39.36 Aligned_cols=84 Identities=12% Similarity=-0.035 Sum_probs=62.1
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 497 ~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
++++.....-+-.+. .+......-++...++|+-+.-.+++..+++-+.-+|.....++++|.+.|...++.+++.+.
T Consensus 69 C~Nlk~vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 69 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444433332 233444555677788899898889999988877667889999999999999999999999999
Q ss_pred HhCCCC
Q 047480 577 DDSGIQ 582 (719)
Q Consensus 577 ~~~~~~ 582 (719)
-++|++
T Consensus 147 Ce~G~K 152 (161)
T d1wy6a1 147 CKKGEK 152 (161)
T ss_dssp HHTTCH
T ss_pred HHHhHH
Confidence 999974
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.11 E-value=0.27 Score=39.34 Aligned_cols=50 Identities=10% Similarity=-0.030 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE----TYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 581 (719)
.|.++|.+.++++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 35667777777776543 34567777777765 3467788888888777664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.88 E-value=1 Score=34.64 Aligned_cols=140 Identities=10% Similarity=0.022 Sum_probs=86.3
Q ss_pred HhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 047480 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 400 (719)
.-.|..++..++..+..... +..-|+.++--....-+-+...+.++ .+.+ ..| ..+|+++...
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld-~IG~---~FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLD-KIGS---YFD----------LDKCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHH-HHGG---GSC----------GGGCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHH-HHhh---hcC----------chhhhcHHHH
Confidence 34566677777776665431 33334444433333344444444443 2211 111 1245555555
Q ss_pred HHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
...+-.+. .+..-.+..++...++|+-+.-.++++.+.+. -+|++.....+..||.+.|...++.+++.++-+.|+
T Consensus 76 v~C~~~~n---~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 76 VECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 55554443 23444666778888888888888888887764 478888888888999999999999999998888776
Q ss_pred c
Q 047480 481 K 481 (719)
Q Consensus 481 ~ 481 (719)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.43 E-value=0.74 Score=36.53 Aligned_cols=111 Identities=9% Similarity=-0.092 Sum_probs=66.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh----cCCHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR----DGRLDEAY 504 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~eA~ 504 (719)
++++|++.|++..+.|. ......|. .....+.++|.+++++..+.| +......|..+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 56677777777777652 22222222 234456778888888777665 33444555555543 34677888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 047480 505 GLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 505 ~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 547 (719)
++|++.-..-++.....|...|.. ..|.++|...++++.++..
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888776323344444455444443 3577888888888776543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.03 E-value=0.47 Score=36.90 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhccCCCCc-hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 532 AKIGEIAGQKLLDLEPDHG-AHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.++|+.+++++++.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3445555555554444332 2344455555555555555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.54 E-value=1.6 Score=33.78 Aligned_cols=71 Identities=7% Similarity=-0.028 Sum_probs=45.9
Q ss_pred cChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 482 PQMEHYGCMVDLLARDGR---LDEAYGLIQSM-PYDA-NS-VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~---~~eA~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
|+..+--.+..++.++.+ .++++.++++. ...| +. ..|-.|.-+|.+.|++++|.+.++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 444444455556665543 34566666665 1223 22 355566667888899999999999999999987533
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.14 E-value=4.4 Score=29.35 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=47.8
Q ss_pred CchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 88 SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 88 ~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
+.-++.+-++.+...... |++....+.|+||.+.+++..|.++++-+.... ..+..+|..++.
T Consensus 21 D~we~rrgmN~l~~~DlV-PeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 444666777777777887 999999999999999999999999998876443 334556665553
|