Citrus Sinensis ID: 047483

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MMATFISSASSSFLILQPLKPPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN
Secondary Structure (PSIPRED)
cccEEEEccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEEccccEEEEEcccEEEEccHHHHHHHHHHHHcccEEcccccEEEEEcccEEccccccccEEEcccccHHHHHHHHHccccEEEEEEEEEEEEEEEccEEEEEEccccEEcccEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccEEcccccccccccccccccccccccccccccccccccccccccHccccccccccHHHHHccccccccccccccccccccEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccccccEEEccccccEEcccccEEEcccHHHHHHHHHHHHccccccccccEEEEcccccccccccccccEEcccccHHHHHHHHHccccEEEEEEEEEEEEccccccEEEcccccccccccEEEEEcc
Coil and Loop (DISEMBL)
MMATFIssasssflilqplkppkhsrlskaKTLTSTikatssqpkpnnanarkptprnrrrssygssrRSALKKTFAQeqvtftapvssdphvgiiGGGMAGLACALSldkrgvkstvfdtgnhglggrmgtrmigpqplifdhaaqfftvndsRFHELVDGWlerglvrpwegvigelevggqftpfpssppkyigvngmrpLADSLLAQTSMVSivrpcwisnlqpfngmwhlsenvklrgqFDVVVIAHN
Flexible Loop (DISEMBL)
mmatfissasssflilqplkppkhsrlsKAKTLTstikatssqpkpnnanarkptprnrrrssygssrrsalkktfaqeqvtftapvssdphVGIIGGGMAGLACALSLDKRGVKSTVfdtgnhglggrMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN
Low Complexity Region (SEG)
mmatfissasssflilQPLKPPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPTPrnrrrssygssrrsALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN
Disordered region (IsUnstruct)
********************************************************************************VTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIA**
Disordered Region (DISOPRED)
***************************************************************************************SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQF*PFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN
Disordered Region (DISEMBL)
**********SSFLILQPLKP****************************************************KTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN
Disordered Region (DISPRO)
*MATFISSASSSFLILQPLKP**********************************************************QVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMATFISSASSSFLILQPLKPPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
224130614	496	predicted protein [Populus trichocarpa]	0.972	0.495	0.695	5e-98
225463946	467	PREDICTED: uncharacterized protein LOC10	0.857	0.464	0.713	2e-90
296087896	518	unnamed protein product [Vitis vinifera]	0.857	0.418	0.713	2e-90
449443231	545	PREDICTED: uncharacterized protein LOC10	0.988	0.458	0.625	1e-87
449483109	536	PREDICTED: uncharacterized protein LOC10	0.988	0.466	0.625	2e-87
18396966	486	FAD/NAD(P)-binding oxidoreductase domain	0.944	0.491	0.640	1e-80
297828968	485	oxidoreductase [Arabidopsis lyrata subsp	0.944	0.492	0.640	2e-80
255580905	467	conserved hypothetical protein [Ricinus	0.774	0.419	0.653	2e-77
414868817	266	TPA: hypothetical protein ZEAMMB73_11144	0.794	0.755	0.638	7e-73
414868816	384	TPA: hypothetical protein ZEAMMB73_11144	0.794	0.523	0.638	8e-73

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 185/266 (69%), Positives = 206/266 (77%), Gaps = 20/266 (7%)

Query: 2   MATFISSASS----SFLILQPLKPPKH------SRLSKAKTLTSTIKATSSQPKPNNA-- 49
           MAT + S  S    S L LQPLK   H      SR    KTLT T        KPNN   
Sbjct: 1   MATLVHSIPSISFLSSLTLQPLKIKTHKKSLSTSRSEPIKTLTCTTS------KPNNKSP 54

Query: 50  --NARKPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACAL 107
             + RKPT +  R+SSYG+SRRS LKKTF QEQVTFT+ +SSDPHVGIIGGGMAGL CAL
Sbjct: 55  TMDGRKPTSKKTRKSSYGTSRRSVLKKTFIQEQVTFTSQLSSDPHVGIIGGGMAGLLCAL 114

Query: 108 SLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG 167
           SL+KRGVKSTVFDTG HGLGGRMGTR+I PQPLIFDHAAQFFTV+D RF ELVD WLE+G
Sbjct: 115 SLEKRGVKSTVFDTGIHGLGGRMGTRVIDPQPLIFDHAAQFFTVSDPRFSELVDDWLEKG 174

Query: 168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQ 227
           LVR W+G+IGELEVGGQF PFPSS P+YI VNGMR LADS+L+QT MV++VRPCWIS L+
Sbjct: 175 LVRQWQGIIGELEVGGQFLPFPSSTPRYISVNGMRSLADSILSQTCMVNVVRPCWISKLE 234

Query: 228 PFNGMWHLSENVKLRGQFDVVVIAHN 253
           PFNGMWHLSEN K  GQFD++VIAHN
Sbjct: 235 PFNGMWHLSENGKPCGQFDIIVIAHN 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 185/220 (84%), Gaps = 3/220 (1%)

Query: 37  IKATSSQPKPNNANA---RKPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHV 93
           +  + S+P P  A++   +KPT R  R++SYG+SR+S LKK+F QEQV FTAP+S DP V
Sbjct: 17  VSGSLSKPNPKKASSMQGQKPTSRKPRKASYGASRKSILKKSFNQEQVMFTAPLSDDPAV 76

Query: 94  GIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVND 153
            IIGGGMAGL+CAL L+KRGV+STVFDTG HGLGGRMGTRMI PQ LIFDHAAQFFTV D
Sbjct: 77  AIIGGGMAGLSCALYLEKRGVRSTVFDTGVHGLGGRMGTRMIDPQSLIFDHAAQFFTVGD 136

Query: 154 SRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS 213
            RF +LVDGWLE+GLV+ W+G+IGELEVGGQF P PS PP+YIGVNGMRPLADS+L+QT+
Sbjct: 137 PRFAQLVDGWLEKGLVQQWQGMIGELEVGGQFVPLPSLPPRYIGVNGMRPLADSILSQTT 196

Query: 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253
           MV++VRPCWIS L PFNGMWHLSEN K  GQ+D +VIAHN
Sbjct: 197 MVNVVRPCWISKLDPFNGMWHLSENGKPHGQYDAIVIAHN 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 185/220 (84%), Gaps = 3/220 (1%)

Query: 37  IKATSSQPKPNNANA---RKPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHV 93
           +  + S+P P  A++   +KPT R  R++SYG+SR+S LKK+F QEQV FTAP+S DP V
Sbjct: 17  VSGSLSKPNPKKASSMQGQKPTSRKPRKASYGASRKSILKKSFNQEQVMFTAPLSDDPAV 76

Query: 94  GIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVND 153
            IIGGGMAGL+CAL L+KRGV+STVFDTG HGLGGRMGTRMI PQ LIFDHAAQFFTV D
Sbjct: 77  AIIGGGMAGLSCALYLEKRGVRSTVFDTGVHGLGGRMGTRMIDPQSLIFDHAAQFFTVGD 136

Query: 154 SRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS 213
            RF +LVDGWLE+GLV+ W+G+IGELEVGGQF P PS PP+YIGVNGMRPLADS+L+QT+
Sbjct: 137 PRFAQLVDGWLEKGLVQQWQGMIGELEVGGQFVPLPSLPPRYIGVNGMRPLADSILSQTT 196

Query: 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253
           MV++VRPCWIS L PFNGMWHLSEN K  GQ+D +VIAHN
Sbjct: 197 MVNVVRPCWISKLDPFNGMWHLSENGKPHGQYDAIVIAHN 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 165/264 (62%), Positives = 206/264 (78%), Gaps = 14/264 (5%)

Query: 2   MATFISSASSSFLILQPLKPPKHSRLSKAKTLTST----IKATSSQPKPNNA-NARKPT- 55
           M++  +   SS LILQPLK  + +  S +K  ++T    + A+ SQPKPN+  N+RKPT 
Sbjct: 1   MSSLFTPFISSSLILQPLKFSQLTIFS-SKPYSNTNFIPVVASHSQPKPNSKHNSRKPTM 59

Query: 56  ------PRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSL 109
                  + RR+SSYG+SRRS LKKTF QEQVTFT+ +S DP + IIGGGMAG+ CALSL
Sbjct: 60  DGSKPTSKFRRKSSYGTSRRSILKKTFNQEQVTFTSALSDDPLIAIIGGGMAGIMCALSL 119

Query: 110 DKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169
           +KRGV+STVFDTG HGLGGRMGTR +GP+PL+FDHAAQFFTV D++F +LVDGWL   LV
Sbjct: 120 EKRGVRSTVFDTGIHGLGGRMGTRSLGPEPLMFDHAAQFFTVTDNQFAQLVDGWLAADLV 179

Query: 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPF 229
           + W+G +GELE+GG+F P  SS P+YIG NGMRPLADSLL+QTS+++++RPCWIS L+PF
Sbjct: 180 KEWKGTVGELELGGRFVPM-SSCPRYIGTNGMRPLADSLLSQTSLINVIRPCWISKLEPF 238

Query: 230 NGMWHLSENVKLRGQFDVVVIAHN 253
           NGMWHLSEN K  G FD +VIAHN
Sbjct: 239 NGMWHLSENGKPCGHFDAIVIAHN 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483109|ref|XP_004156495.1| PREDICTED: uncharacterized protein LOC101226129 [Cucumis sativus]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/264 (62%), Positives = 206/264 (78%), Gaps = 14/264 (5%)

Query: 2   MATFISSASSSFLILQPLKPPKHSRLSKAKTLTST----IKATSSQPKPNNA-NARKPT- 55
           M++  +   SS LILQPLK  + +  S +K  ++T    + A+ SQPKPN+  N+RKPT 
Sbjct: 1   MSSLFTPFISSSLILQPLKFSQLTIFS-SKPYSNTNFIPVVASHSQPKPNSKHNSRKPTM 59

Query: 56  ------PRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSL 109
                  + RR+SSYG+SRRS LKKTF QEQVTFT+ +S DP + IIGGGMAG+ CALSL
Sbjct: 60  DGSKPTSKFRRKSSYGTSRRSILKKTFNQEQVTFTSALSDDPLIAIIGGGMAGIMCALSL 119

Query: 110 DKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169
           +KRGV+STVFDTG HGLGGRMGTR +GP+PL+FDHAAQFFTV D++F +LVDGWL   LV
Sbjct: 120 EKRGVRSTVFDTGIHGLGGRMGTRSLGPEPLMFDHAAQFFTVTDNQFAQLVDGWLAADLV 179

Query: 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPF 229
           + W+G +GELE+GG+F P  SS P+YIG NGMRPLADSLL+QTS+++++RPCWIS L+PF
Sbjct: 180 KEWKGTVGELELGGRFVPM-SSCPRYIGTNGMRPLADSLLSQTSLINVIRPCWISKLEPF 238

Query: 230 NGMWHLSENVKLRGQFDVVVIAHN 253
           NGMWHLSEN K  G FD +VIAHN
Sbjct: 239 NGMWHLSENGKPCGHFDAIVIAHN 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396966|ref|NP_566235.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|6175169|gb|AAF04895.1|AC011437_10 unknown protein [Arabidopsis thaliana] gi|15215628|gb|AAK91359.1| AT3g04650/F7O18_13 [Arabidopsis thaliana] gi|28416461|gb|AAO42761.1| At3g04650/F7O18_13 [Arabidopsis thaliana] gi|332640593|gb|AEE74114.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/242 (64%), Positives = 189/242 (78%), Gaps = 3/242 (1%)

Query: 14  LILQPLKPPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPTPRNRRRSS-YGSSRRSAL 72
           L L+ L  P+++ LS  + + +T  + ++  K +N ++R P  + RR SS YG+SRRS L
Sbjct: 16  LKLKTLAQPRNTDLSTTRKIITTCDSQNNTGK-SNPSSRNPNFQKRRNSSKYGTSRRSIL 74

Query: 73  KKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
           KK+F QEQVTFTA VS DPHV IIGGGMAGL CAL+L+ RGV+STVFDTG HGLGGR+GT
Sbjct: 75  KKSFLQEQVTFTARVSDDPHVAIIGGGMAGLVCALNLEARGVQSTVFDTGIHGLGGRLGT 134

Query: 133 RMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGG-QFTPFPSS 191
           R+I PQ LIFDHAAQFFT +DSRF +LVDGWLE+GLVR W+G +GELE+GG       SS
Sbjct: 135 RIIEPQGLIFDHAAQFFTADDSRFIKLVDGWLEKGLVREWKGAVGELEIGGSFSQFPSSS 194

Query: 192 PPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIA 251
           PP+YI  NGMR LADSLL ++ MV++VRPCWIS L+P NGMWHLSEN   RGQFDV+VIA
Sbjct: 195 PPRYIAANGMRSLADSLLLESQMVNLVRPCWISKLEPLNGMWHLSENGTPRGQFDVIVIA 254

Query: 252 HN 253
           HN
Sbjct: 255 HN 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828968|ref|XP_002882366.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297328206|gb|EFH58625.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 155/242 (64%), Positives = 188/242 (77%), Gaps = 3/242 (1%)

Query: 14  LILQPLKPPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPTPRNRRRSS-YGSSRRSAL 72
           L L+ L  P+++ LS  + + +T  +  +  K +N ++R P  + RR SS YG+SRRS L
Sbjct: 16  LKLKTLSKPRNTDLSTTRKIITTCDSQKNTGK-SNPSSRNPNFQKRRNSSKYGTSRRSIL 74

Query: 73  KKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
           KK+F QEQVTFTA +S DPHV IIGGGMAGL CAL+L+ RGV+STVFDTG HGLGGR+GT
Sbjct: 75  KKSFLQEQVTFTARISDDPHVAIIGGGMAGLVCALNLEARGVQSTVFDTGIHGLGGRLGT 134

Query: 133 RMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGG-QFTPFPSS 191
           R+I PQ LIFDHAAQFFT +DSRF +LVDGWLE+GLVR W+G +GELEVGG       SS
Sbjct: 135 RIIEPQGLIFDHAAQFFTADDSRFIKLVDGWLEKGLVREWKGAVGELEVGGSFSQFPSSS 194

Query: 192 PPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIA 251
           PP+YI VNGM  LADSLL ++ MV++VRPCWIS L+P NGMWHLSEN   RGQFDV+VIA
Sbjct: 195 PPRYIAVNGMLSLADSLLLESQMVNLVRPCWISKLEPLNGMWHLSENGTPRGQFDVIVIA 254

Query: 252 HN 253
           HN
Sbjct: 255 HN 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580905|ref|XP_002531271.1| conserved hypothetical protein [Ricinus communis] gi|223529104|gb|EEF31084.1| conserved hypothetical protein [Ricinus communis]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/222 (65%), Positives = 169/222 (76%), Gaps = 26/222 (11%)

Query: 32  TLTSTIKATSSQPKPNNANARKPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDP 91
           TLT T   T+SQP       ++PT +NR++SSYG+SRRS LKKTF+QEQV F+ PVS DP
Sbjct: 41  TLTCT---TTSQPN------KRPTSKNRKKSSYGTSRRSVLKKTFSQEQVNFSFPVSDDP 91

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTV 151
           HVGIIGGGMAGL CA++L+KRGVKSTVFDTGNHGLGGRMGTR+I PQPL+FDHAAQFFTV
Sbjct: 92  HVGIIGGGMAGLVCAVNLEKRGVKSTVFDTGNHGLGGRMGTRVIDPQPLVFDHAAQFFTV 151

Query: 152 NDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQ 211
           +D +F +LVDGWLE+GL+R W+G IGELE GG    +                    L Q
Sbjct: 152 SDPQFAQLVDGWLEKGLIRQWQGTIGELEKGGHSLTY-----------------SGCLLQ 194

Query: 212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253
           TSMV +VRPCWIS L+PFNGMWHLSEN K  GQFDV+VIAHN
Sbjct: 195 TSMVEVVRPCWISRLEPFNGMWHLSENGKPCGQFDVIVIAHN 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414868817|tpg|DAA47374.1| TPA: hypothetical protein ZEAMMB73_111446, partial [Zea mays]

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 157/202 (77%), Gaps = 1/202 (0%)

Query: 53  KPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKR 112
           + +PR  RR   G SRRSA+KK+F QEQV F+ PVS+DP V +IGGG +GL+CA SL  R
Sbjct: 34  RASPRRGRRGKPGFSRRSAIKKSFHQEQVVFSTPVSTDPTVAVIGGGASGLSCATSLAAR 93

Query: 113 GVKSTVFDTGNHGLGGRMGTRMI-GPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP 171
           GV+S VFDTG HGLGGRM TR + G + L+FDHAAQFFT +D RF  LV+ WL+RGLVR 
Sbjct: 94  GVRSVVFDTGMHGLGGRMATRFVDGGKQLVFDHAAQFFTASDERFQRLVNEWLDRGLVRE 153

Query: 172 WEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG 231
           W G+IGELE GG F P PS  P+YIGVNGMRPLAD++L +T M+ ++RPCWIS L+PFNG
Sbjct: 154 WSGLIGELEAGGCFRPIPSLTPRYIGVNGMRPLADAMLPETDMIKVLRPCWISKLEPFNG 213

Query: 232 MWHLSENVKLRGQFDVVVIAHN 253
           +W L EN K RG++D VVIAHN
Sbjct: 214 LWRLFENEKPRGEYDAVVIAHN 235

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414868816|tpg|DAA47373.1| TPA: hypothetical protein ZEAMMB73_111446, partial [Zea mays]

 Score =  279 bits (714), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 157/202 (77%), Gaps = 1/202 (0%)

Query: 53  KPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKR 112
           + +PR  RR   G SRRSA+KK+F QEQV F+ PVS+DP V +IGGG +GL+CA SL  R
Sbjct: 34  RASPRRGRRGKPGFSRRSAIKKSFHQEQVVFSTPVSTDPTVAVIGGGASGLSCATSLAAR 93

Query: 113 GVKSTVFDTGNHGLGGRMGTRMI-GPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP 171
           GV+S VFDTG HGLGGRM TR + G + L+FDHAAQFFT +D RF  LV+ WL+RGLVR 
Sbjct: 94  GVRSVVFDTGMHGLGGRMATRFVDGGKQLVFDHAAQFFTASDERFQRLVNEWLDRGLVRE 153

Query: 172 WEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG 231
           W G+IGELE GG F P PS  P+YIGVNGMRPLAD++L +T M+ ++RPCWIS L+PFNG
Sbjct: 154 WSGLIGELEAGGCFRPIPSLTPRYIGVNGMRPLADAMLPETDMIKVLRPCWISKLEPFNG 213

Query: 232 MWHLSENVKLRGQFDVVVIAHN 253
           +W L EN K RG++D VVIAHN
Sbjct: 214 LWRLFENEKPRGEYDAVVIAHN 235

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.932	0.485	0.610	2.7e-75
TAIR|locus:2012030	384	AT1G56000 [Arabidopsis thalian	0.600	0.395	0.349	1.2e-16
TAIR|locus:2012005	466	AT1G55980 [Arabidopsis thalian	0.600	0.326	0.349	2.2e-16
UNIPROTKB|Q48MT7	328	PSPPH_1014 "Uncharacterized pr	0.600	0.463	0.306	5.8e-12
UNIPROTKB|Q4K6B1	328	PFL_5143 "FAD dependent oxidor	0.600	0.463	0.312	9.7e-12

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 149/244 (61%), Positives = 181/244 (74%)

Query:    17 QPLK-----PPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPT-PXXXXXXXXXXXXXX 70
             QPLK      P+++ LS  + + +T  + ++  K +N ++R P                 
Sbjct:    14 QPLKLKTLAQPRNTDLSTTRKIITTCDSQNNTGK-SNPSSRNPNFQKRRNSSKYGTSRRS 72

Query:    71 ALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
              LKK+F QEQVTFTA VS DPHV IIGGGMAGL CAL+L+ RGV+STVFDTG HGLGGR+
Sbjct:    73 ILKKSFLQEQVTFTARVSDDPHVAIIGGGMAGLVCALNLEARGVQSTVFDTGIHGLGGRL 132

Query:   131 GTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPS 190
             GTR+I PQ LIFDHAAQFFT +DSRF +LVDGWLE+GLVR W+G +GELE+GG F+ FPS
Sbjct:   133 GTRIIEPQGLIFDHAAQFFTADDSRFIKLVDGWLEKGLVREWKGAVGELEIGGSFSQFPS 192

Query:   191 S-PPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV 249
             S PP+YI  NGMR LADSLL ++ MV++VRPCWIS L+P NGMWHLSEN   RGQFDV+V
Sbjct:   193 SSPPRYIAANGMRSLADSLLLESQMVNLVRPCWISKLEPLNGMWHLSENGTPRGQFDVIV 252

Query:   250 IAHN 253
             IAHN
Sbjct:   253 IAHN 256

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2012030 AT1G56000 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 59/169 (34%), Positives = 87/169 (51%)

Query:    93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRM-IGP--QPLIFDHAAQFF 149
             V +IG G++G  CA +L + GV  T+FD+G  G GGRM  R  IG   + L+FDH A FF
Sbjct:    23 VAVIGSGISGAVCASTLARNGVSVTIFDSGR-GPGGRMSQRREIGEDGKELMFDHGAPFF 81

Query:   150 TVNDSRFHELVDGWLERGLVRPWEGVIGELE-VGGQFTPFPSS--PPKYIGVNGMRPLAD 206
              V++S    LV  W  RG V  W+ V G  +    +F          KY+GV GM  ++ 
Sbjct:    82 CVSNSDAMALVHEWESRGFVSEWKQVFGSFDCASNKFLGIQQEGDAKKYVGVPGMNSISK 141

Query:   207 SLLAQTSMVS-----IVRPCWISNLQPFNGMWHLSENV-KLRGQFDVVV 249
             +L  ++ + S     I +  W+    P    W L+++  +  G+FD VV
Sbjct:   142 ALCNESGVKSMFGTGIAKMEWLEEEIP----WLLTDSKGENLGRFDGVV 186

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2012005 AT1G55980 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 59/169 (34%), Positives = 87/169 (51%)

Query:    93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRM-IGP--QPLIFDHAAQFF 149
             V +IG G++G  CA +L + GV  T+FD+G  G GGRM  R  IG   + L+FDH A FF
Sbjct:   161 VAVIGSGISGAVCASTLARNGVSVTIFDSGR-GPGGRMSQRREIGEDGKELMFDHGAPFF 219

Query:   150 TVNDSRFHELVDGWLERGLVRPWEGVIGELE-VGGQFTPFPSS--PPKYIGVNGMRPLAD 206
              V++S    LV  W  RG V  W+ V G  +    +F          KY+GV GM  ++ 
Sbjct:   220 CVSNSDAMALVHEWESRGFVSEWKQVFGSFDCASNKFLGIQQEGDAKKYVGVPGMNSISK 279

Query:   207 SLLAQTSMVS-----IVRPCWISNLQPFNGMWHLSENV-KLRGQFDVVV 249
             +L  ++ + S     I +  W+    P    W L+++  +  G+FD VV
Sbjct:   280 ALCNESGVKSMFGTGIAKMEWLEEEIP----WLLTDSKGENLGRFDGVV 324

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q48MT7 PSPPH_1014 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 166 (63.5 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 49/160 (30%), Positives = 77/160 (48%)

Query:    93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
             + IIG G+AGL+ A +L   G +  +FD  + G GGRM ++      L  D  AQ+FT  
Sbjct:     5 IAIIGTGIAGLSAAQALTSAGHQVHLFDK-SRGSGGRMSSKRSDAGSL--DMGAQYFTAR 61

Query:   153 DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT 212
             D RF   V  W  +G V  W  ++     GG+ +P P    +++G  GM  +  ++    
Sbjct:    62 DRRFATAVKQWQAQGHVSEWTPLLYNFH-GGRLSPSPDEQVRWVGEPGMSAITRAMRGDL 120

Query:   213 SMVSIVRPCWISNLQPFNGMWHLSE-NVKLRGQFDVVVIA 251
               VS    C I+++      W+L +   +  G F  V+IA
Sbjct:   121 P-VSF--SCRITDVFRGEQHWNLLDAEGENHGPFSHVIIA 157

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4K6B1 PFL_5143 "FAD dependent oxidoreductase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 164 (62.8 bits), Expect = 9.7e-12, P = 9.7e-12
 Identities = 50/160 (31%), Positives = 72/160 (45%)

Query:    93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
             + IIG G+AGL+ A +L   G    +FD  + G GGRM ++      L  D  AQ+FT  
Sbjct:     5 IAIIGTGIAGLSAAQALRDAGHTVHLFDK-SRGSGGRMSSKRSDAGSL--DLGAQYFTAR 61

Query:   153 DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT 212
             D RF   V  W  +G V  W   +     GGQ +P P    +++G   M  +  +L+   
Sbjct:    62 DRRFVTEVQRWQAKGWVAEWTPQLYNSH-GGQLSPSPDEQTRWVGTPRMSAITRALIGD- 119

Query:   213 SMVSIVRPCWISNLQPFNGMWHLSENVKL-RGQFDVVVIA 251
               +     C I+ +      WHL +      G F  VVIA
Sbjct:   120 --LEAHFACRITEVFRGEQHWHLQDAEGFTHGPFSHVVIA 157


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       223   0.00098  112 3  11 22  0.40    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.06u 0.13s 19.19t   Elapsed:  00:00:01
  Total cpu time:  19.06u 0.13s 19.19t   Elapsed:  00:00:01
  Start:  Sat May 11 09:53:19 2013   End:  Sat May 11 09:53:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_70000013 hypothetical protein (496 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	9e-24
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	2e-11
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	9e-08
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	2e-07
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	4e-06
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	9e-06
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	2e-05
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	3e-05
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	5e-05
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	6e-05
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	7e-05
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	9e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	1e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	2e-04
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	3e-04
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	4e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	4e-04
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	4e-04
PRK08401	466	PRK08401, PRK08401, L-aspartate oxidase; Provision	5e-04
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	5e-04
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	5e-04
TIGR03378	419	TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate d	6e-04
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	7e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	0.002
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	0.002
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	0.002
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	0.002
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	0.003
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	0.003
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	0.003
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	0.003
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	0.003
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	0.004
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	0.004

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 97.2 bits (242), Expect = 9e-24
 Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 91  PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT 150
           P + I+G G+AGLA A +L + G + TVF+ G  G+GGR+ TR +      FDH AQ+F 
Sbjct: 2   PSIAIVGAGIAGLAAAYALREAGREVTVFEKG-RGVGGRLATRRL--DGGRFDHGAQYFK 58

Query: 151 VNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLA 210
             D  F   V+   + GLV  W   +     G    P     P Y+G  GM  LA  L  
Sbjct: 59  PRDELFLRAVEALRDDGLVDVWTPAVWTFT-GDGSPPRGDEDP-YVGEPGMSALAKFLAT 116

Query: 211 QTSMVSIVRPCWISNLQPFNGMWHLSENVKLR-GQFDVVVIA 251
               +++V    ++ +   +  W L  +   R  QFD VV+A
Sbjct: 117 D---LTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLA 155

Length = 331

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           I+G G++GL  A  L KRG    V +  +  +GG   +          D+ A  F  +  
Sbjct: 1   IVGAGLSGLVAAYLLAKRGKDVLVLEKRDR-IGGNAYSERDP--GYRHDYGAHIFHTSYP 57

Query: 155 RFHELVD 161
              EL+D
Sbjct: 58  NVRELLD 64

Length = 66

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147
                V +IG G+ GLA A  L + G+K TV +  N  +GGR  T  +      FD    
Sbjct: 1   MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEK-NDRVGGRARTFELD--GFRFDTGPS 57

Query: 148 FFTV-NDSRFHELVDGWLERGLVRPW 172
           ++ + +       +      GL    
Sbjct: 58  WYLMPDPGPLFRELGNLDADGLDLLP 83

Length = 487

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 76  FAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
                V F     +   V +IG G AGL  A  L ++G   T+F+      GG
Sbjct: 126 METGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEA-RDKAGG 177

Length = 457

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 77  AQEQVTFTAP-VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
                 F AP   +   V +IGGG AGL+ A  L + G   T+F+ G   LGG M
Sbjct: 123 IANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK-LGGMM 176

Length = 564

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 92  HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFF 149
            + IIGGG+AGL+ A  L K G  V+ T+F+  +  +GG + T  I      F+     F
Sbjct: 2   KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR-VGGLLRTVKIDGFL--FERGPHHF 58

Query: 150 TVNDSRFHELVDGWLERGL 168
               +R  E++D   E GL
Sbjct: 59  L---ARKEEILDLIKELGL 74

Length = 444

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 87  VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
             SD  V IIG G AGLACA  L + GV  TV+D
Sbjct: 324 TKSDKRVAIIGAGPAGLACADVLARNGVAVTVYD 357

Length = 654

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFD 120
            V I+G G AGLA AL+L + G+  T+ +
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLE 32

Length = 387

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
            + I+GGG+AGLA A  L KRG + TVF+  +  LGG   +
Sbjct: 1   KIAIVGGGIAGLAAAYRLAKRGHEVTVFE-ADDQLGGLAAS 40

Length = 434

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 77  AQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
            ++             V ++G G  GL  A +  KRG K T+ +  +  LGG++
Sbjct: 123 REDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR-LGGQL 175

Length = 415

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFD 120
            V +IGGG+ GL+ A  L +RG+  T+ +
Sbjct: 1   DVVVIGGGIVGLSTAYELARRGLSVTLLE 29

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
            V I G G+AGLA A  L   G   T+++  +  LGG++ +
Sbjct: 2   RVAIAGAGLAGLAAAYELADAGYDVTLYEARDR-LGGKVAS 41

Length = 485

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
           V +IG G AGLA A  L + G   TVF+      GG +
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFER-VALDGGLL 162

Length = 457

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG--GRMGTRMIGPQPLIFDHAAQFF 149
            V IIGGG+ GL+ A  L +RG   TV + G  G G  GR    ++ P            
Sbjct: 6   DVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRP 65

Query: 150 TVNDSR-FHELVDGWLERGLVRPWEGVI 176
             + S      +   L  G      G++
Sbjct: 66  LADLSLALWRELSEELGTGAGLRRRGLL 93

Length = 387

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 20/85 (23%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG------RMGTRM-IGPQPL 140
           ++   V IIG G AGL  A  L KRG   TV +     +GG        G R  IG    
Sbjct: 2   TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV-VGGISRTVTYKGNRFDIGG--- 57

Query: 141 IFDHAAQFFTVNDSRFHELVDGWLE 165
              H  +FF+ +     E++D W E
Sbjct: 58  ---H--RFFSKSP----EVMDLWNE 73

Length = 479

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 85  APVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
           A + S   V +IG G AGLA A  L + G   TVF+
Sbjct: 534 AGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFE 569

Length = 1019

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFD 120
           V ++G G AGLA A  L + G K TVF+
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTVFE 173

Length = 471

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDT--GNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
           IIGGG AGLA A+ L + G+K  + +   G     G +      P+ L+    A+     
Sbjct: 4   IIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCL------PKKLLL-EVAEGLE-- 54

Query: 153 DSRFHELVDGWLERGLVR 170
            +    L +   +   V 
Sbjct: 55  LAIGLALPEEVYKEFGVE 72

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 83  FTAPVSSDP-HVGIIGGGMAGLACALSLDKRGVKSTVFD 120
           F  P S       IIGGG+AG A AL+L +RG + T+++
Sbjct: 252 FARPGSPKARDAAIIGGGIAGAALALALARRGWQVTLYE 290

Length = 662

>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTG 122
           VGI+GGG+AGL  A+SL K+G   T+   G
Sbjct: 4   VGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33

Length = 466

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTV 118
           +IGGG+AGL  AL+  + G +  +
Sbjct: 7   VIGGGLAGLTAALAAAEAGKRVAL 30

Length = 422

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDT 121
           V I GGG+ GL  AL+L +RG++  VF+ 
Sbjct: 3   VLIAGGGIGGLTLALTLHQRGIEVVVFEA 31

Length = 413

>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGL 126
           V IIGGG+AGL+CAL L + G K  +   G   L
Sbjct: 3   VIIIGGGLAGLSCALRLAEAGKKCAIIAAGQSAL 36

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase [Energy metabolism, Anaerobic]. Length = 419

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFD 120
           V +IG G AGLACA  L + GV+  VFD
Sbjct: 144 VAVIGAGPAGLACADILARAGVQVVVFD 171

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNH-----GLGGRMGTRMIGPQPLIFDHAAQFF 149
           I+G G AG + A  L K G+   V + G+        GG +  R +  + LI D   +  
Sbjct: 8   IVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRAL--EELIPDFDEEIE 65

Query: 150 T-VNDSRFHELVD 161
             V  +R +   +
Sbjct: 66  RKVTGARIYFPGE 78

Length = 396

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 91  PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123
             V +IGGG AGL  A+S  KRG +  + D G 
Sbjct: 1   YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGK 33

Length = 405

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131
           V I+G G +GL  A  L K G+K  VF+      GG M 
Sbjct: 28  VAIVGAGPSGLTAAYYLAKAGLKVAVFERKL-SFGGGMW 65

Length = 257

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 69  RSALKKT-FAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG 127
           R A+ K    +        VS    V +IGGG+AG+  AL L   G K  + +     +G
Sbjct: 104 RMAVAKARKLEPLEEIKVEVSKS--VLVIGGGVAGITAALELADMGFKVYLVEK-EPSIG 160

Query: 128 GRMGT 132
           GRM  
Sbjct: 161 GRMAK 165

Length = 622

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
           V IIGGG AGL  A+   + G+K  +   G    GG++  
Sbjct: 6   VIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTK 44

Length = 305

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 78  QEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
            E     AP S+   V +IG G AGLACA  L K G   TVF+   H  GG +
Sbjct: 122 IETEPEKAP-STHKKVAVIGAGPAGLACASELAKAGHSVTVFE-ALHKPGGVV 172

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 76  FAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD---TGNHGLGGRMGT 132
             Q      A       V IIG G+ GL  A    K G    V+D       G+    G+
Sbjct: 148 RIQGGRMGGAGGVPPAKVLIIGAGVVGLGAAKIAKKLGANVLVYDIKEEKLKGVETLGGS 207

Query: 133 RMIGPQ 138
           R+   Q
Sbjct: 208 RLRYSQ 213

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 91  PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
           P V +IGGG+AG+A A +L     K T+ ++ +  +GGR+ T
Sbjct: 1   PSVIVIGGGIAGIAAARALHDASFKVTLLESRDR-IGGRVHT 41

Length = 435

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 56  PRNRRRSSYGSSRRSALKK--TFAQEQVTFTAPVSSDPH-VGIIGGGMAGLACALSLDKR 112
             +  R S    R     +   FA  Q       S + + VGIIG G+ G A A++  +R
Sbjct: 82  MPSSARLSSPQPRSEKSLRANGFATSQSM---NFSDEEYDVGIIGCGVGGHAAAINAMER 138

Query: 113 GVKSTVFDTGNHGLGG 128
           G+K  +F   +  +GG
Sbjct: 139 GLKVIIFTGDDDSIGG 154

Length = 659

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTG 122
           V IIGGG AGL  A+S  K G +  + D G
Sbjct: 6   VIIIGGGPAGLMAAISAAKAGRRVLLIDKG 35

Length = 408

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 89  SDPHVGIIGGGMAGLACALSLDK 111
             P V IIG G+AGL  ALSL  
Sbjct: 6   EHPDVLIIGSGLAGLTAALSLAP 28

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.87
COG2081	408	Predicted flavoproteins [General function predicti	99.74
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.72
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.6
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.57
PRK07236	386	hypothetical protein; Provisional	99.56
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.55
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.55
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.54
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.53
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.52
PLN02576	496	protoporphyrinogen oxidase	99.52
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.52
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.52
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.52
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.51
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.51
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.5
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.5
PLN02268	435	probable polyamine oxidase	99.5
PRK08013	400	oxidoreductase; Provisional	99.5
PRK06753	373	hypothetical protein; Provisional	99.49
PRK06847	375	hypothetical protein; Provisional	99.48
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.48
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.48
PRK07045	388	putative monooxygenase; Reviewed	99.48
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.47
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.47
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.46
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.46
PRK08163	396	salicylate hydroxylase; Provisional	99.46
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.46
PRK07588	391	hypothetical protein; Provisional	99.46
PRK05868	372	hypothetical protein; Validated	99.46
PRK07233	434	hypothetical protein; Provisional	99.46
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.46
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.46
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.45
PRK06184	502	hypothetical protein; Provisional	99.45
PRK09126	392	hypothetical protein; Provisional	99.45
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.45
PRK10157	428	putative oxidoreductase FixC; Provisional	99.45
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.45
PLN02661	357	Putative thiazole synthesis	99.45
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.45
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.44
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.44
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.44
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.44
PRK07190	487	hypothetical protein; Provisional	99.44
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.44
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.44
PLN02568	539	polyamine oxidase	99.44
PRK06834	488	hypothetical protein; Provisional	99.43
COG0579	429	Predicted dehydrogenase [General function predicti	99.43
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.43
PRK06185	407	hypothetical protein; Provisional	99.42
PRK10015	429	oxidoreductase; Provisional	99.42
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.42
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.42
PRK07208	479	hypothetical protein; Provisional	99.41
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.4
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.4
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.39
PRK06475	400	salicylate hydroxylase; Provisional	99.39
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.39
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.38
PRK06126	545	hypothetical protein; Provisional	99.38
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.37
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.37
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.37
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.36
PRK08244	493	hypothetical protein; Provisional	99.35
PLN02463	447	lycopene beta cyclase	99.35
PRK06996	398	hypothetical protein; Provisional	99.35
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.35
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.34
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.34
PLN02676	487	polyamine oxidase	99.33
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.33
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.33
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.32
PRK11445	351	putative oxidoreductase; Provisional	99.32
PRK07538	413	hypothetical protein; Provisional	99.32
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.31
PRK08274	466	tricarballylate dehydrogenase; Validated	99.31
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.31
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.31
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.3
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.3
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.3
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.29
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.28
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.28
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.27
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.26
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.26
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.26
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.25
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.25
PLN02529	738	lysine-specific histone demethylase 1	99.24
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.23
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.23
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.22
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.22
PLN02697	529	lycopene epsilon cyclase	99.22
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.21
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.21
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.21
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.2
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.2
PRK08294	634	phenol 2-monooxygenase; Provisional	99.2
PRK05257	494	malate:quinone oxidoreductase; Validated	99.2
PRK09897	534	hypothetical protein; Provisional	99.2
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.19
PLN03000	881	amine oxidase	99.19
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.18
PLN02985	514	squalene monooxygenase	99.18
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.17
PRK06175	433	L-aspartate oxidase; Provisional	99.17
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.17
PRK10262	321	thioredoxin reductase; Provisional	99.17
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.17
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.15
PRK08401	466	L-aspartate oxidase; Provisional	99.14
PLN02612	567	phytoene desaturase	99.13
PTZ00367	567	squalene epoxidase; Provisional	99.13
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.12
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.12
PRK07804	541	L-aspartate oxidase; Provisional	99.12
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.12
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.1
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.1
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.1
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.09
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.09
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.09
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.09
PRK07121	492	hypothetical protein; Validated	99.07
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.07
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.07
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.06
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.06
PRK08071	510	L-aspartate oxidase; Provisional	99.06
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.06
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.05
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.04
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.04
PRK06370	463	mercuric reductase; Validated	99.04
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.03
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.03
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.03
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.02
PRK06116	450	glutathione reductase; Validated	99.02
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.02
PRK14694	468	putative mercuric reductase; Provisional	99.01
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.99
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.99
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.99
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.99
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.98
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.98
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.97
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.97
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.97
PRK08275	554	putative oxidoreductase; Provisional	98.96
PRK07395	553	L-aspartate oxidase; Provisional	98.95
PLN02976	1713	amine oxidase	98.95
PLN02815	594	L-aspartate oxidase	98.95
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.95
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.94
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.94
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.94
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.94
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.94
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.93
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.92
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.92
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.91
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.91
PRK07512	513	L-aspartate oxidase; Provisional	98.9
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.9
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.89
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.88
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.88
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.88
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.88
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.87
PRK12839	572	hypothetical protein; Provisional	98.87
PRK09077	536	L-aspartate oxidase; Provisional	98.86
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.86
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.85
COG3349	485	Uncharacterized conserved protein [Function unknow	98.84
PTZ00058	561	glutathione reductase; Provisional	98.84
PRK13748	561	putative mercuric reductase; Provisional	98.83
PLN02546	558	glutathione reductase	98.83
PRK14727	479	putative mercuric reductase; Provisional	98.83
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.83
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.83
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.83
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.82
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.82
PLN02507	499	glutathione reductase	98.82
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.81
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.8
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.8
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.79
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.78
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.78
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.77
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.77
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.77
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.76
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.75
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.75
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.75
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.75
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.74
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.74
TIGR02053	463	MerA mercuric reductase. This model represents the	98.73
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.73
PRK12831	464	putative oxidoreductase; Provisional	98.73
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.72
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.71
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.71
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.7
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.7
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.7
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.7
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.7
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.7
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.68
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.67
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.66
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.66
PRK07846	451	mycothione reductase; Reviewed	98.66
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.65
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.64
PLN02852	491	ferredoxin-NADP+ reductase	98.64
COG3573	552	Predicted oxidoreductase [General function predict	98.64
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.63
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.62
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.62
PTZ00052	499	thioredoxin reductase; Provisional	98.62
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.62
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.61
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.61
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.61
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.61
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.6
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.6
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.6
PRK06116	450	glutathione reductase; Validated	98.6
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.59
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.59
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.58
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.58
PLN02487	569	zeta-carotene desaturase	98.56
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.56
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.55
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.55
PLN02507	499	glutathione reductase	98.55
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.55
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.54
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.54
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.54
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.54
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.54
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.52
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.52
TIGR02053	463	MerA mercuric reductase. This model represents the	98.51
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.51
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.5
PRK07846	451	mycothione reductase; Reviewed	98.5
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.49
PRK06370	463	mercuric reductase; Validated	98.49
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.48
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.47
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.46
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.45
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.45
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.45
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.45
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.44
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.42
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.4
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.4
PTZ00052	499	thioredoxin reductase; Provisional	98.38
PRK14727	479	putative mercuric reductase; Provisional	98.37
PRK13748	561	putative mercuric reductase; Provisional	98.37
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.37
PRK14694	468	putative mercuric reductase; Provisional	98.36
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.35
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.35
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.34
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.34
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.34
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	98.33
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.33
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.33
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.3
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.29
PTZ00058	561	glutathione reductase; Provisional	98.29
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.29
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.27
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.27
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	98.27
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.26
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.25
PRK13984	604	putative oxidoreductase; Provisional	98.25
KOG2853	509	consensus Possible oxidoreductase [General functio	98.22
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.22
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.2
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.18
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.18
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.15
PLN02546	558	glutathione reductase	98.15
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.14
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.12
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.1
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.09
KOG2852	380	consensus Possible oxidoreductase [General functio	98.09
PRK02106	560	choline dehydrogenase; Validated	98.01
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.01
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.01
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.97
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.96
PTZ00188	506	adrenodoxin reductase; Provisional	97.9
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.9
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.9
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.87
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.87
PRK10262	321	thioredoxin reductase; Provisional	97.86
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.86
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.83
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.81
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.8
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.79
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.79
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.78
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.78
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.73
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.71
PRK12831	464	putative oxidoreductase; Provisional	97.71
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.67
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.61
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.56
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.55
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.47
PLN02785	587	Protein HOTHEAD	97.47
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.41
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.38
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.35
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.34
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.33
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.25
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.24
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.21
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.15
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.14
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.08
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.08
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.05
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.01
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.96
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.95
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.94
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.9
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.85
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.73
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.71
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.65
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	96.58
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.49
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.47
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.46
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.45
PRK13984	604	putative oxidoreductase; Provisional	96.44
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.43
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.43
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.42
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.31
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.29
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.19
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.18
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.16
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.15
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.07
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.97
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.96
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.95
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.87
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.87
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	95.86
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.85
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.85
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.8
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.76
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.72
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.71
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.66
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.66
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.65
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.62
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	95.59
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.58
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.51
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.5
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.5
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.48
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.47
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.47
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.47
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.46
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.41
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.38
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.37
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.36
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.27
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.23
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	95.19
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.16
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.07
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.04
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.89
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.86
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.84
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.84
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.77
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.76
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.65
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.59
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.57
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.55
PRK07417	279	arogenate dehydrogenase; Reviewed	94.54
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.5
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.4
PRK04148	134	hypothetical protein; Provisional	94.4
KOG2755	334	consensus Oxidoreductase [General function predict	94.36
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.34
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.29
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.13
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.08
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.03
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.02
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.01
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.0
PRK06223	307	malate dehydrogenase; Reviewed	93.96
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.94
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.92
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.92
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.9
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	93.88
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.86
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.82
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.78
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.77
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.75
PLN02712	667	arogenate dehydrogenase	93.74
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.71
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	93.68
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	93.63
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.54
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.53
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	93.52
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.45
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.42
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.4
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	93.4
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.38
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.37
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.3
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.3
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.27
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.24
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.21
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.2
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.16
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.15
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.14
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.1
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.09
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.05
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.04
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.03
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.03
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.0
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.99
COG4716	587	Myosin-crossreactive antigen [Function unknown]	92.95
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	92.9
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	92.86
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.81
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.76
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.74
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	92.73
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	92.71
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	92.66
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.64
PRK08328	231	hypothetical protein; Provisional	92.61

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.87  E-value=8.3e-22  Score=163.09  Aligned_cols=153  Identities=34%  Similarity=0.591  Sum_probs=129.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+||+|++||+.|.+.|.+|+||||+ .++|||+.++..+.  ..||+|.++|...++.+.+.++.+.+.+++.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg-~GvGGRlAtRRl~~--g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~   78 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKG-RGVGGRLATRRLDG--GRFDHGAQYFKPRDELFLRAVEALRDDGLVD   78 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcC-CCcccchheeccCC--ccccccceeecCCchHHHHHHHHHHhCCcee
Confidence            47999999999999999999999999999998 58999999998874  4599999999999999999999999999999


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc-cceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV-KLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~-~~~~~ad~VV  249 (253)
                      .|...+..+...+ ..+.+.. .+|++.++|.++.+.|+..   .+|.++++|+.+.+.++.|+++.++ +....+|.||
T Consensus        79 ~W~~~~~~~~~~~-~~~~~d~-~pyvg~pgmsalak~LAtd---L~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vv  153 (331)
T COG3380          79 VWTPAVWTFTGDG-SPPRGDE-DPYVGEPGMSALAKFLATD---LTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVV  153 (331)
T ss_pred             eccccccccccCC-CCCCCCC-CccccCcchHHHHHHHhcc---chhhhhhhhhhheecCCeeEEEecCCCcccccceEE
Confidence            9966554443332 2233333 3499999999999977654   8999999999999999999999744 4568999999


Q ss_pred             Ec
Q 047483          250 IA  251 (253)
Q Consensus       250 ~A  251 (253)
                      +|
T Consensus       154 la  155 (331)
T COG3380         154 LA  155 (331)
T ss_pred             Ee
Confidence            87

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.74  E-value=1.8e-17  Score=144.84  Aligned_cols=150  Identities=24%  Similarity=0.272  Sum_probs=101.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC--------CCccccccCCCccccccccceeccCchhHHHHHH
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG--------GRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVD  161 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      .+||+|||||++||+||..++++|.+|+|||+++. .|        |++.-   .+.. .++....-+..+...+...+.
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~---Tn~~-~~~~~ls~~p~~~~fl~sal~   77 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNF---TNSE-APDEFLSRNPGNGHFLKSALA   77 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccc---cccc-cHHHHHHhCCCcchHHHHHHH
Confidence            37999999999999999999999999999999853 33        33321   1111 122111111112234444455


Q ss_pred             hhhhcccccccccccc--ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEe
Q 047483          162 GWLERGLVRPWEGVIG--ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSE  237 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~  237 (253)
                      .+.+.++...+...-.  .....|++||..+..         .++++.|+.++.  ||+|+++++|.+|++++..+.+.+
T Consensus        78 ~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA---------~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t  148 (408)
T COG2081          78 RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKA---------SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT  148 (408)
T ss_pred             hCCHHHHHHHHHhcCCeeEEccCceecCCccch---------HHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc
Confidence            5433333332222211  233456777776665         778888777665  799999999999999998999988


Q ss_pred             CccceeecCEEEEcCC
Q 047483          238 NVKLRGQFDVVVIAHN  253 (253)
Q Consensus       238 ~~~~~~~ad~VV~AtG  253 (253)
                      .++..++||.||+|+|
T Consensus       149 ~~g~~i~~d~lilAtG  164 (408)
T COG2081         149 SSGETVKCDSLILATG  164 (408)
T ss_pred             CCCCEEEccEEEEecC
Confidence            7776899999999998

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.72  E-value=4.5e-17  Score=146.64  Aligned_cols=150  Identities=19%  Similarity=0.264  Sum_probs=82.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC--------CCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG--------GRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      |||+|||||++||+||+.|++.|.+|+||||+.. .|        ||+.-...   ....+....-+..+...+...+..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~-~gkKil~tG~GrCN~tn~---~~~~~~~~~~~~~~~~f~~~~l~~   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKR-VGKKILITGNGRCNLTNL---NIDPSEFLSGYGRNPKFLKSALKR   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS-S-HHHHHCGGGT-EEEET---TSSGGGEECS-TBTTTCTHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc-cccceeecCCCCcccccc---ccchhhHhhhcccchHHHHHHHhc
Confidence            6999999999999999999999999999999864 44        33331110   111111111111233344444554


Q ss_pred             hhhcccccccccccc--ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe-EEEEe
Q 047483          163 WLERGLVRPWEGVIG--ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM-WHLSE  237 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~-~~v~~  237 (253)
                      +...+....+.+.-.  .....+.++|.....         .++++.|..++.  +++|+++++|.+|+.++++ +.|.+
T Consensus        77 f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a---------~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~  147 (409)
T PF03486_consen   77 FSPEDLIAFFEELGVPTKIEEDGRVFPKSDKA---------SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT  147 (409)
T ss_dssp             S-HHHHHHHHHHTT--EEE-STTEEEETT--H---------HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE
T ss_pred             CCHHHHHHHHHhcCCeEEEcCCCEECCCCCcH---------HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec
Confidence            433332222222211  223356677766554         667666665543  7999999999999998877 88887


Q ss_pred             CccceeecCEEEEcCC
Q 047483          238 NVKLRGQFDVVVIAHN  253 (253)
Q Consensus       238 ~~~~~~~ad~VV~AtG  253 (253)
                      .++..+.||.||+|+|
T Consensus       148 ~~~~~~~a~~vILAtG  163 (409)
T PF03486_consen  148 KNGGEYEADAVILATG  163 (409)
T ss_dssp             TTTEEEEESEEEE---
T ss_pred             cCcccccCCEEEEecC
Confidence            5778999999999998

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.60  E-value=6.5e-15  Score=120.38  Aligned_cols=134  Identities=21%  Similarity=0.237  Sum_probs=74.5

Q ss_pred             EEECcCHHHHHHHHHHhHcCCe-EEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccccc
Q 047483           94 GIIGGGMAGLACALSLDKRGVK-STVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPW  172 (253)
Q Consensus        94 ~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      +|||||++||++|..|.++|.+ |+|||++. .+||.|...... ..+..   ...+. ....+.             ++
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~-~~Gg~w~~~~~~-~~~~~---~~~~~-~~~~~~-------------~~   61 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND-RPGGVWRRYYSY-TRLHS---PSFFS-SDFGLP-------------DF   61 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSS-SSTTHHHCH-TT-TT-BS---SSCCT-GGSS---------------CC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC-CCCCeeEEeCCC-Ccccc---Ccccc-ccccCC-------------cc
Confidence            6999999999999999999999 99999985 589887632111 00000   00000 000000             00


Q ss_pred             cccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483          173 EGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At  252 (253)
                      ....  .    ...+...+...+.....+.++++.+++++. ++++++++|+++++++++|.|+..++..++||.||+|+
T Consensus        62 ~~~~--~----~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAt  134 (203)
T PF13738_consen   62 ESFS--F----DDSPEWRWPHDFPSGEEVLDYLQEYAERFG-LEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLAT  134 (203)
T ss_dssp             CHSC--H----HHHHHHHHSBSSEBHHHHHHHHHHHHHHTT-GGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE--
T ss_pred             cccc--c----ccCCCCCCCcccCCHHHHHHHHHHHHhhcC-cccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEee
Confidence            0000  0    000000000111222235677777777774 78999999999999999999998887789999999999


Q ss_pred             C
Q 047483          253 N  253 (253)
Q Consensus       253 G  253 (253)
                      |
T Consensus       135 G  135 (203)
T PF13738_consen  135 G  135 (203)
T ss_dssp             -
T ss_pred             e
Confidence            8

...

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.57  E-value=2.7e-14  Score=130.87  Aligned_cols=154  Identities=19%  Similarity=0.342  Sum_probs=87.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCC-CccccccccceeccCchhHHHHHHhhhhccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGP-QPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+|+|||||++||++|.+|.+.|++|+|||++. .+||.|....... .....+......  .    ..+.+.+ ....
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~-~vGG~W~~~~~~~~d~~~~~~~~~~~--~----s~~Y~~L-~tn~   81 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK-QVGGLWVYTPKSESDPLSLDPTRSIV--H----SSVYESL-RTNL   81 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC-CCcceeecCCCcCCCccccCCCCccc--c----hhhhhhh-hccC
Confidence            4799999999999999999999999999999986 5899885422110 001111000000  0    0011110 0000


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcE--EEcCeEEEEEEEeCCeEEEEeCccc----e
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVS--IVRPCWISNLQPFNGMWHLSENVKL----R  242 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~--i~~~t~V~~i~~~~~~~~v~~~~~~----~  242 (253)
                      .++... +..+.....+.....+.+.|.....+.++++.+++.++ +.  |+++++|++|++.++.|.|+..++.    +
T Consensus        82 p~~~m~-f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~  159 (461)
T PLN02172         82 PRECMG-YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKD  159 (461)
T ss_pred             CHhhcc-CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEeecCCeEEEEEEcCCCceEE
Confidence            000000 00000000000001122334444456777777777765 54  9999999999998889998754321    4


Q ss_pred             eecCEEEEcCC
Q 047483          243 GQFDVVVIAHN  253 (253)
Q Consensus       243 ~~ad~VV~AtG  253 (253)
                      ..+|.||+|+|
T Consensus       160 ~~~d~VIvAtG  170 (461)
T PLN02172        160 EIFDAVVVCNG  170 (461)
T ss_pred             EEcCEEEEecc
Confidence            57999999998

>PRK07236 hypothetical protein; Provisional

Probab=99.56  E-value=1.8e-13  Score=122.93  Aligned_cols=140  Identities=21%  Similarity=0.230  Sum_probs=83.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..||+|||||++||++|+.|+++|++|+||||.+.....+ +      .++.       +   .+...+.++.+   ++.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-g------~gi~-------l---~~~~~~~l~~l---g~~   65 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGR-G------AGIV-------L---QPELLRALAEA---GVA   65 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCC-C------ceeE-------e---CHHHHHHHHHc---CCC
Confidence            3799999999999999999999999999999975211000 0      0000       0   01112222221   110


Q ss_pred             cccc-----ccccceeeCCeee-eCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcccee
Q 047483          170 RPWE-----GVIGELEVGGQFT-PFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRG  243 (253)
Q Consensus       170 ~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~  243 (253)
                      ....     .........+... ..+.  ..  .......+.+.|.+..++++|+++++|++++.+++++.++.+++.++
T Consensus        66 ~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~--~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~  141 (386)
T PRK07236         66 LPADIGVPSRERIYLDRDGRVVQRRPM--PQ--TQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRE  141 (386)
T ss_pred             cccccccCccceEEEeCCCCEeeccCC--Cc--cccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEE
Confidence            0000     0000011111110 0000  00  01123456666777666688999999999998888898888888899


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      +||.||.|||
T Consensus       142 ~ad~vIgADG  151 (386)
T PRK07236        142 TADLLVGADG  151 (386)
T ss_pred             EeCEEEECCC
Confidence            9999999998

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.55  E-value=1.3e-13  Score=125.93  Aligned_cols=68  Identities=29%  Similarity=0.514  Sum_probs=51.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +|+|||||++||+||+.|+++|  ++|+|||++. .+||++.+....  +..+|.|.+.+....+.+.+++++
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~-~~GGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~l~~~   71 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASD-RLGGKIQTVRKD--GFPIELGPESFLARKPSAPALVKE   71 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC-CCcceEEEEeeC--CeEEecChHHhcCCcHHHHHHHHH
Confidence            6999999999999999999988  8999999985 599998775443  456777776554333334444433

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.55  E-value=4.9e-14  Score=131.03  Aligned_cols=137  Identities=20%  Similarity=0.312  Sum_probs=89.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++||++|..|.+.|++|++|||++ .+||.|........+.     ...|..       +     ......
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~-~iGG~W~~~~~~~~g~-----~~~y~s-------l-----~~n~sk   63 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD-DIGGLWRYTENPEDGR-----SSVYDS-------L-----HTNTSK   63 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS-SSSGGGCHSTTCCCSE-----GGGSTT-------------B-SS-G
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC-CCCccCeeCCcCCCCc-----cccccc-------e-----EEeeCc
Confidence            479999999999999999999999999999986 5999886432211110     001100       0     000000


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeC-----CeEEEEeCccc---
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFN-----GMWHLSENVKL---  241 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~-----~~~~v~~~~~~---  241 (253)
                      +..    .+    ..+|++...+.|.....+.++++.++++++ .-.|+|||+|+++++.+     +.|.|++.+++   
T Consensus        64 ~~~----~f----sdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~  135 (531)
T PF00743_consen   64 EMM----AF----SDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEE  135 (531)
T ss_dssp             GGS----CC----TTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEE
T ss_pred             hHh----cC----CCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEE
Confidence            000    00    225566666777777778899999999886 34799999999999864     36998865432   


Q ss_pred             eeecCEEEEcCC
Q 047483          242 RGQFDVVVIAHN  253 (253)
Q Consensus       242 ~~~ad~VV~AtG  253 (253)
                      +..+|.||+|+|
T Consensus       136 ~~~fD~VvvatG  147 (531)
T PF00743_consen  136 TEEFDAVVVATG  147 (531)
T ss_dssp             EEEECEEEEEE-
T ss_pred             EEEeCeEEEcCC
Confidence            456899999998

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.54  E-value=1.2e-13  Score=124.80  Aligned_cols=69  Identities=32%  Similarity=0.648  Sum_probs=56.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483           92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      .|+|||||++||++||.|.+++  ++|+|||+++ .+||...+...  .++.+|.|.+.+......+.+++.++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~-r~GG~l~T~~~--~G~~~e~G~~~f~~~~~~~l~li~eL   72 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD-RVGGLLRTVKI--DGFLFERGPHHFLARKEEILDLIKEL   72 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC-CCCceEEEEee--CCEEEeechhheecchHHHHHHHHHh
Confidence            5999999999999999999999  9999999985 59998877644  47888998887776656666666553

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.53  E-value=1.5e-13  Score=125.39  Aligned_cols=129  Identities=21%  Similarity=0.280  Sum_probs=88.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVK-STVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ..+||+|||||++||++|++|.++|.. ++||||+. ..||.|....++.  +..+.....+.                 
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~-~~Gg~W~~~ry~~--l~~~~p~~~~~-----------------   66 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD-DVGGTWRYNRYPG--LRLDSPKWLLG-----------------   66 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC-CcCCcchhccCCc--eEECCchheec-----------------
Confidence            348999999999999999999999998 99999996 5899887655542  22221111110                 


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEe--CCeEEEEeCccce--
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPF--NGMWHLSENVKLR--  242 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~--~~~~~v~~~~~~~--  242 (253)
                                     -.+.|++ +...+.....+.+++...++++. ..+|.+++.|+.+..+  ++.|.|+.+++..  
T Consensus        67 ---------------~~~~p~~-~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~  130 (443)
T COG2072          67 ---------------FPFLPFR-WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGE  130 (443)
T ss_pred             ---------------cCCCccC-CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeee
Confidence                           0223333 22233333336777777777765 3567788877777655  4579998777655  


Q ss_pred             eecCEEEEcCC
Q 047483          243 GQFDVVVIAHN  253 (253)
Q Consensus       243 ~~ad~VV~AtG  253 (253)
                      ++||.||+|||
T Consensus       131 ~~a~~vV~ATG  141 (443)
T COG2072         131 LTADFVVVATG  141 (443)
T ss_pred             EecCEEEEeec
Confidence            45999999998

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.52  E-value=1.2e-13  Score=125.09  Aligned_cols=34  Identities=29%  Similarity=0.604  Sum_probs=32.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|+++|++|+||||++
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   51 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP   51 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence            4899999999999999999999999999999975

>PLN02576 protoporphyrinogen oxidase

Probab=99.52  E-value=2.9e-13  Score=125.46  Aligned_cols=69  Identities=26%  Similarity=0.512  Sum_probs=55.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHH
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVD  161 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      ..||+|||||++||++|+.|.++ |++|+|||++. .+||+..+...+  ++.+|.|.+.+....+.+..+++
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~-rvGGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~l~~   81 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD-RVGGNITSVSED--GFIWEEGPNSFQPSDPELTSAVD   81 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC-CCCCceeEeccC--CeEEecCCchhccCcHHHHHHHH
Confidence            37999999999999999999999 99999999985 599998876543  56788888877655555544443

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.52  E-value=2.6e-13  Score=124.74  Aligned_cols=51  Identities=20%  Similarity=0.002  Sum_probs=39.1

Q ss_pred             hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +..+++.|++.+.  |++|+++++|++|+. ++.+.|.+.+ +.++||.||+|+|
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~-g~v~A~~VV~Atg  234 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPD-GQVTADKVVLALN  234 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCC-cEEECCEEEEccc
Confidence            5566666665432  799999999999985 4557776554 5899999999987

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.52  E-value=6.3e-14  Score=127.01  Aligned_cols=138  Identities=21%  Similarity=0.320  Sum_probs=94.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||||++||++|.+|.++|++|+||||.. .+||.|.......     +.....|.           .+ .....
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~-~iGGlW~y~~~~~-----~~~ss~Y~-----------~l-~tn~p   67 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD-DIGGLWKYTENVE-----VVHSSVYK-----------SL-RTNLP   67 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecC-CccceEeecCccc-----ccccchhh-----------hh-hccCC
Confidence            4799999999999999999999999999999985 6999885432111     00011111           00 00111


Q ss_pred             ccccccccceeeCCeeeeCCCCCCcc-ccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeC-CeEEEEeCcc----ce
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKY-IGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFN-GMWHLSENVK----LR  242 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~-~~~~v~~~~~----~~  242 (253)
                      ++..+        -..+|++...+.+ .....+.++++.+++.++ ...|+++++|..++..+ +.|.|.+.+.    ..
T Consensus        68 Ke~~~--------~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~  139 (448)
T KOG1399|consen   68 KEMMG--------YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEE  139 (448)
T ss_pred             hhhhc--------CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeE
Confidence            11111        0235555554444 333467888888888887 46899999999999888 7999985443    36


Q ss_pred             eecCEEEEcCC
Q 047483          243 GQFDVVVIAHN  253 (253)
Q Consensus       243 ~~ad~VV~AtG  253 (253)
                      ..+|.||+|+|
T Consensus       140 ~ifd~VvVctG  150 (448)
T KOG1399|consen  140 EIFDAVVVCTG  150 (448)
T ss_pred             EEeeEEEEccc
Confidence            78999999998

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.52  E-value=4.9e-14  Score=124.00  Aligned_cols=52  Identities=21%  Similarity=0.128  Sum_probs=40.0

Q ss_pred             hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+.  |++|+++++|++|..+++.|+ |.+.++. ++||.||+|+|
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G  200 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAG  200 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--G
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccc
Confidence            4566666555432  799999999999999999998 8777765 99999999987

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.51  E-value=4.4e-13  Score=123.27  Aligned_cols=55  Identities=16%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483          198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At  252 (253)
                      ..++..+.+.|.+..+.++|+++++|++|++++++|.|.+.++..+.||.||+|.
T Consensus       222 ~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~  276 (463)
T PRK12416        222 KGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAA  276 (463)
T ss_pred             CCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECC
Confidence            4568889988888765457999999999999988898887777789999999985

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.51  E-value=3.7e-13  Score=123.56  Aligned_cols=69  Identities=29%  Similarity=0.491  Sum_probs=55.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           91 PHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      .||+|||||++||++|+.|.++    |++|+|+|++. ..||++.+....  ++.+|.|.+++....+.+.+++++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~-r~GG~~~t~~~~--g~~~e~G~~~~~~~~~~~~~l~~~   75 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD-RVGGKIQTVKED--GYLIERGPDSFLERKKSAPDLVKD   75 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC-cCcceEEEEeeC--CEEEecCccccccCChHHHHHHHH
Confidence            6899999999999999999999    99999999986 599998775443  566788877777665555555544

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.50  E-value=2.1e-13  Score=123.22  Aligned_cols=40  Identities=13%  Similarity=0.164  Sum_probs=36.6

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|+++++++++|.+++.++.+++||.||.|||
T Consensus       126 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG  165 (405)
T PRK05714        126 DIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADG  165 (405)
T ss_pred             CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence            6999999999999988888988877777899999999998

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.50  E-value=1.8e-13  Score=123.06  Aligned_cols=143  Identities=17%  Similarity=0.133  Sum_probs=80.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCC--CCCCccccccCCCccccccccceeccCchhHHHHHHhhhh-cc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG--LGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLE-RG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  167 (253)
                      +||+|||||++||++|+.|+++|++|+|||+....  ..|+.  ..+.                 +.-.++++.+.- ..
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~--~~l~-----------------~~~~~~L~~lG~~~~   63 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRG--IALS-----------------PNALRALERLGLWDR   63 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCcee--eeec-----------------HhHHHHHHHcCChhh
Confidence            79999999999999999999999999999997211  11110  0010                 000111221110 00


Q ss_pred             cccc---ccccccceeeCC-eeeeC-----CCCCCcc-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe
Q 047483          168 LVRP---WEGVIGELEVGG-QFTPF-----PSSPPKY-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE  237 (253)
Q Consensus       168 ~~~~---~~~~~~~~~~~~-~~~~~-----~~~~~~~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~  237 (253)
                      +...   +.... .....+ ....+     ......+ +....+...+...+.+.++++++++++|+.++++++.+.++.
T Consensus        64 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l  142 (387)
T COG0654          64 LEALGVPPLHVM-VVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTL  142 (387)
T ss_pred             hhhccCCceeeE-EEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEE
Confidence            0000   00000 001111 00111     1010111 111123334444444455699999999999999988888876


Q ss_pred             C-ccceeecCEEEEcCC
Q 047483          238 N-VKLRGQFDVVVIAHN  253 (253)
Q Consensus       238 ~-~~~~~~ad~VV~AtG  253 (253)
                      + ++.+++||+||.|||
T Consensus       143 ~~dG~~~~a~llVgADG  159 (387)
T COG0654         143 SFDGETLDADLLVGADG  159 (387)
T ss_pred             cCCCcEEecCEEEECCC
Confidence            6 888999999999998

>PLN02268 probable polyamine oxidase

Probab=99.50  E-value=6e-13  Score=121.39  Aligned_cols=68  Identities=28%  Similarity=0.462  Sum_probs=53.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccC--chhHHHHHHh
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN--DSRFHELVDG  162 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  162 (253)
                      +|+|||||++||++|+.|.++|++|+|||+++ .+|||+.+...  .+..+|.|++++...  ...+.+++++
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~-r~GGri~t~~~--~g~~~d~G~~~i~~~~~~~~~~~l~~~   71 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRD-RIGGRVHTDYS--FGFPVDMGASWLHGVCNENPLAPLIGR   71 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCceeeecCc--CCcccCCCCeeEeccCCCchHHHHHHH
Confidence            79999999999999999999999999999985 69999977543  356788998877532  2234444444

>PRK08013 oxidoreductase; Provisional

Probab=99.50  E-value=2.1e-13  Score=123.13  Aligned_cols=44  Identities=16%  Similarity=0.020  Sum_probs=38.4

Q ss_pred             hhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          210 AQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       210 ~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...++++++++++|++++++++.+.++..++.+++||+||.|||
T Consensus       122 ~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG  165 (400)
T PRK08013        122 QQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADG  165 (400)
T ss_pred             hcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCC
Confidence            33447999999999999988888888877878899999999998

>PRK06753 hypothetical protein; Provisional

Probab=99.49  E-value=6e-13  Score=118.86  Aligned_cols=147  Identities=16%  Similarity=0.184  Sum_probs=80.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccccc
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP  171 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      ||+|||||++||++|+.|+++|++|+||||.+. ......+..+...      +...+..  .   .+.+.+...+....
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~~g~gi~l~~~------~~~~L~~--~---gl~~~~~~~~~~~~   69 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES-VKEVGAGIGIGDN------VIKKLGN--H---DLAKGIKNAGQILS   69 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-ccccccceeeChH------HHHHHHh--c---ChHHHHHhcCCccc
Confidence            799999999999999999999999999999853 2110000000000      0000000  0   00111100000000


Q ss_pred             ccccccceeeCCee-eeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          172 WEGVIGELEVGGQF-TPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                         .....+..+.. .............-.-..+.+.|.+..+..+|+++++|++|+++++++.++++++..+++|.||.
T Consensus        70 ---~~~~~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vig  146 (373)
T PRK06753         70 ---TMNLLDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIG  146 (373)
T ss_pred             ---ceeEEcCCCCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEE
Confidence               00000011111 00000000000111223455555565556789999999999988888988888888899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |||
T Consensus       147 adG  149 (373)
T PRK06753        147 ADG  149 (373)
T ss_pred             CCC
Confidence            998

>PRK06847 hypothetical protein; Provisional

Probab=99.48  E-value=5e-13  Score=119.39  Aligned_cols=40  Identities=13%  Similarity=0.089  Sum_probs=36.4

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|++++.+++.+.+.+.++.++.+|.||+|||
T Consensus       121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG  160 (375)
T PRK06847        121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG  160 (375)
T ss_pred             CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence            6899999999999988888888877778899999999998

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.48  E-value=6.1e-13  Score=119.72  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=36.5

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|++++.+++.+.++.+++.+++||.||+|+|
T Consensus       127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG  166 (392)
T PRK08773        127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADG  166 (392)
T ss_pred             CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecC
Confidence            6999999999999988888888877777899999999998

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.48  E-value=6.4e-13  Score=118.66  Aligned_cols=51  Identities=4%  Similarity=-0.068  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          202 RPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..++..+.+..  .+++++++++|++++.+++.|.+.++++ .++||.||+|+|
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G  201 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAG  201 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecC
Confidence            44444443322  2799999999999998888888876654 899999999998

>PRK07045 putative monooxygenase; Reviewed

Probab=99.48  E-value=6.2e-13  Score=119.50  Aligned_cols=152  Identities=20%  Similarity=0.167  Sum_probs=77.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhh-hcc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWL-ERG  167 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  167 (253)
                      ..+||+||||||+||++|+.|+++|++|+|+|+.+. ..-..+...+.+.+.      ..+..- ..+..+.+... ...
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~-~~~~~~~~~l~~~~~------~~L~~l-Gl~~~~~~~~~~~~~   75 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR-NRAQNGADLLKPSGI------GVVRAM-GLLDDVFAAGGLRRD   75 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc-ccCCCcccccCccHH------HHHHHc-CCHHHHHhccccccc
Confidence            347999999999999999999999999999999753 110000000111110      011000 00000010000 000


Q ss_pred             ccccccccccceeeCCeeeeCCCCC-CccccCCChHHHHHHHHhh---cCCcEEEcCeEEEEEEEeCCe--EEEEeCccc
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSP-PKYIGVNGMRPLADSLLAQ---TSMVSIVRPCWISNLQPFNGM--WHLSENVKL  241 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~--~~v~~~~~~  241 (253)
                      ....+..  +...   ...++.... ..+...-....+.+.|.++   .++++++++++|++++.++++  +.|+.+++.
T Consensus        76 ~~~~~~~--g~~~---~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~  150 (388)
T PRK07045         76 AMRLYHD--KELI---ASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE  150 (388)
T ss_pred             ceEEecC--CcEE---EEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC
Confidence            0000000  0000   000111100 0110000112333334433   347999999999999887554  457777778


Q ss_pred             eeecCEEEEcCC
Q 047483          242 RGQFDVVVIAHN  253 (253)
Q Consensus       242 ~~~ad~VV~AtG  253 (253)
                      ++++|.||.|||
T Consensus       151 ~~~~~~vIgADG  162 (388)
T PRK07045        151 RVAPTVLVGADG  162 (388)
T ss_pred             EEECCEEEECCC
Confidence            899999999998

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.47  E-value=4.6e-13  Score=120.27  Aligned_cols=42  Identities=10%  Similarity=-0.021  Sum_probs=38.2

Q ss_pred             cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       212 ~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .++++++++++|++++.+++++.++++++.+++||.||.|||
T Consensus       123 ~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG  164 (384)
T PRK08849        123 YPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADG  164 (384)
T ss_pred             CCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecC
Confidence            357999999999999998888888888888999999999998

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.47  E-value=5.2e-13  Score=120.75  Aligned_cols=42  Identities=14%  Similarity=0.031  Sum_probs=37.6

Q ss_pred             cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       212 ~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .++++++++++|++++.+++.+.++.+++.+++||.||.|||
T Consensus       124 ~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG  165 (405)
T PRK08850        124 QDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADG  165 (405)
T ss_pred             CCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCC
Confidence            346999999999999988888888888888999999999998

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.46  E-value=1e-12  Score=117.50  Aligned_cols=52  Identities=8%  Similarity=0.020  Sum_probs=39.6

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+  .+++++++++|++|+++++.+.|.+++ +++.+|.||+|+|
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~-~~i~a~~vV~aaG  197 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTK-GSYQANKLVVTAG  197 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCC-CEEEeCEEEEecC
Confidence            345555544432  269999999999999888888876655 4899999999987

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.46  E-value=2.1e-12  Score=123.68  Aligned_cols=53  Identities=23%  Similarity=0.204  Sum_probs=43.5

Q ss_pred             hHHHHHHHHhhcC-CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQTS-MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+... |++++++++|++|+..++.|.|.+.++..++||.||+|+|
T Consensus       407 p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G  460 (662)
T PRK01747        407 PAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANG  460 (662)
T ss_pred             HHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCC
Confidence            4667777766543 6999999999999988888998776666678999999998

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.46  E-value=3.7e-13  Score=121.11  Aligned_cols=51  Identities=12%  Similarity=0.048  Sum_probs=40.4

Q ss_pred             HHHHHHHhh---cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          203 PLADSLLAQ---TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       203 ~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+.+.|.+.   .++++++++++|++++.+++++.+.+.++.++.||.||.|+|
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  163 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDG  163 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCC
Confidence            344444443   235899999999999988888888877777899999999998

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.46  E-value=5e-13  Score=119.50  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=36.2

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|++++.+++++.+.+.++..+.+|.||.|+|
T Consensus       121 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG  160 (385)
T TIGR01988       121 NVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG  160 (385)
T ss_pred             CcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence            4899999999999988888888877777899999999998

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07588 hypothetical protein; Provisional

Probab=99.46  E-value=6e-13  Score=119.72  Aligned_cols=50  Identities=16%  Similarity=0.150  Sum_probs=41.0

Q ss_pred             HHHHHHhhcC-CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          204 LADSLLAQTS-MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       204 l~~~l~~~~~-gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +.+.|.+... +++|+++++|+++++++++|.+.++++.++++|.||.|||
T Consensus       105 l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG  155 (391)
T PRK07588        105 LAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG  155 (391)
T ss_pred             HHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence            4444444333 5899999999999998889998888888899999999998

>PRK05868 hypothetical protein; Validated

Probab=99.46  E-value=9.7e-13  Score=117.79  Aligned_cols=51  Identities=24%  Similarity=0.165  Sum_probs=41.3

Q ss_pred             HHHHHHHhhc-CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          203 PLADSLLAQT-SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       203 ~l~~~l~~~~-~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+.+.|.+.. .+++++++++|++++.+++.+.++++++.+++||.||.|||
T Consensus       106 ~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG  157 (372)
T PRK05868        106 DLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG  157 (372)
T ss_pred             HHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence            3444443332 37999999999999988888888888888999999999998

>PRK07233 hypothetical protein; Provisional

Probab=99.46  E-value=1.1e-12  Score=119.06  Aligned_cols=66  Identities=36%  Similarity=0.590  Sum_probs=48.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHH
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELV  160 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      +|+|||||++||++|+.|+++|++|+|+|++. ..||+..+....  +..+|.+.+.+....+.+.+++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~-~~GG~~~s~~~~--g~~~d~g~~~~~~~~~~~~~l~   66 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD-QLGGLAASFEFG--GLPIERFYHHIFKSDEALLELL   66 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC-CCCCceeeeccC--CcchhhhhhhhccccHHHHHHH
Confidence            58999999999999999999999999999986 589987654433  4455555554433333333333

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.46  E-value=7.5e-13  Score=118.89  Aligned_cols=41  Identities=10%  Similarity=-0.107  Sum_probs=35.3

Q ss_pred             cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       212 ~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+++. +++++|++++.+++.|.++.+++.+++||.||+|||
T Consensus       124 ~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG  164 (388)
T PRK07494        124 LPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG  164 (388)
T ss_pred             CCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence            34455 889999999988889998887777899999999998

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.46  E-value=7.3e-13  Score=119.06  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=38.4

Q ss_pred             HhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          209 LAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       209 ~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +...++++++++++|++++.+++.|.+.++++..+++|.||+|+|
T Consensus       122 ~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG  166 (395)
T PRK05732        122 LDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADG  166 (395)
T ss_pred             HhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence            334457999999999999988888888877777899999999998

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.45  E-value=4e-13  Score=118.09  Aligned_cols=34  Identities=38%  Similarity=0.643  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      +||+|||||++||++|+.|+++|++|+||||...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            6999999999999999999999999999999753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06184 hypothetical protein; Provisional

Probab=99.45  E-value=1e-12  Score=122.01  Aligned_cols=34  Identities=32%  Similarity=0.559  Sum_probs=32.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+||+|||||++||++|+.|+++|++|+||||.+
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~   36 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP   36 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899999999999999999999999999999975

>PRK09126 hypothetical protein; Provisional

Probab=99.45  E-value=4.5e-13  Score=120.41  Aligned_cols=41  Identities=7%  Similarity=0.026  Sum_probs=36.9

Q ss_pred             CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          213 SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       213 ~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+++|+++++|++++.+++.+.+.++++.+++||.||.|||
T Consensus       124 ~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG  164 (392)
T PRK09126        124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADS  164 (392)
T ss_pred             CCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCC
Confidence            47999999999999988888888877778999999999998

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.45  E-value=1.4e-12  Score=117.55  Aligned_cols=52  Identities=8%  Similarity=-0.032  Sum_probs=41.0

Q ss_pred             hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+.  |++++++++|.+++..++.|.+.+.+ +.+.||.||+|+|
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~-g~i~ad~vV~A~G  201 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQ-GEYEARTLINCAG  201 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECC-CEEEeCEEEECCC
Confidence            4566666655432  79999999999999888888777655 4899999999998

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.45  E-value=2e-12  Score=117.83  Aligned_cols=147  Identities=16%  Similarity=0.204  Sum_probs=76.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++|+++|+.|+++|++|+||||... +|..+..            +...+.   ..+..++..+......
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~-~g~k~~~------------gg~l~~---~~~e~l~~~~~~~~~~   68 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS-AGAKNVT------------GGRLYA---HSLEHIIPGFADSAPV   68 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC-CCCcccc------------cceech---hhHHHHhhhhhhcCcc
Confidence            48999999999999999999999999999999753 4432100            000000   0011111111000000


Q ss_pred             cccc--ccccceeeCCe-eeeCCC------CCCcc-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc
Q 047483          170 RPWE--GVIGELEVGGQ-FTPFPS------SPPKY-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV  239 (253)
Q Consensus       170 ~~~~--~~~~~~~~~~~-~~~~~~------~~~~~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~  239 (253)
                      ..+.  .....+...+. ...+..      ....| +.+..+.+++...+++ .|++++++++|++++.+++.+.+..++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~-~Gv~i~~~~~V~~i~~~~g~v~~v~~~  147 (428)
T PRK10157         69 ERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE-AGAQLITGIRVDNLVQRDGKVVGVEAD  147 (428)
T ss_pred             cceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHH-CCCEEECCCEEEEEEEeCCEEEEEEcC
Confidence            0000  00000000000 001100      00111 1111123333333333 279999999999998877776544556


Q ss_pred             cceeecCEEEEcCC
Q 047483          240 KLRGQFDVVVIAHN  253 (253)
Q Consensus       240 ~~~~~ad~VV~AtG  253 (253)
                      +..++|+.||+|+|
T Consensus       148 g~~i~A~~VI~A~G  161 (428)
T PRK10157        148 GDVIEAKTVILADG  161 (428)
T ss_pred             CcEEECCEEEEEeC
Confidence            67899999999998

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.45  E-value=5.4e-13  Score=119.93  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=38.1

Q ss_pred             hhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          210 AQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       210 ~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +..++++++++++|++++.+++.|.+..+++.+++||.||.|||
T Consensus       123 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG  166 (391)
T PRK08020        123 EAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADG  166 (391)
T ss_pred             HcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCC
Confidence            33457999999999999988888888877777899999999998

>PLN02661 Putative thiazole synthesis

Probab=99.45  E-value=4.1e-12  Score=111.37  Aligned_cols=39  Identities=41%  Similarity=0.721  Sum_probs=34.0

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGG  128 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg  128 (253)
                      .++||+|||||++|+++|+.|++. |++|+|+||+.. .||
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~-~GG  130 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS-PGG  130 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc-ccc
Confidence            358999999999999999999986 899999999854 444

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.45  E-value=1.2e-12  Score=122.56  Aligned_cols=149  Identities=19%  Similarity=0.137  Sum_probs=79.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++||++|+.|+++|++|+||||... .........+...      +...+..-     .+.+++..... 
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~-~~~~~ra~~l~~~------~~~~L~~l-----Gl~~~l~~~~~-   76 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT-LYDLPRAVGIDDE------ALRVLQAI-----GLADEVLPHTT-   76 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCCCCceeeeCHH------HHHHHHHc-----CChhHHHhhcc-
Confidence            48999999999999999999999999999999853 2211101001000      00000000     00111111000 


Q ss_pred             ccccccccceeeCC-eeeeCC-------CCCCcc-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC--
Q 047483          170 RPWEGVIGELEVGG-QFTPFP-------SSPPKY-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN--  238 (253)
Q Consensus       170 ~~~~~~~~~~~~~~-~~~~~~-------~~~~~~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~--  238 (253)
                       .+... ......+ ....+.       ++...+ +....+..++...+.+.++++|+++++|++++++++++.++.+  
T Consensus        77 -~~~~~-~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~  154 (538)
T PRK06183         77 -PNHGM-RFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDA  154 (538)
T ss_pred             -cCCce-EEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcC
Confidence             00000 0000001 111110       011011 1112233444443444557999999999999999888887654  


Q ss_pred             cc--ceeecCEEEEcCC
Q 047483          239 VK--LRGQFDVVVIAHN  253 (253)
Q Consensus       239 ~~--~~~~ad~VV~AtG  253 (253)
                      ++  .+++||+||.|||
T Consensus       155 ~G~~~~i~ad~vVgADG  171 (538)
T PRK06183        155 DGQRETVRARYVVGCDG  171 (538)
T ss_pred             CCCEEEEEEEEEEecCC
Confidence            33  4799999999998

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.44  E-value=1e-12  Score=117.73  Aligned_cols=41  Identities=7%  Similarity=0.170  Sum_probs=35.8

Q ss_pred             cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       212 ~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .++++++++++|+++.++++++.+.++++ +++||.||.|||
T Consensus       117 ~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG  157 (374)
T PRK06617        117 NPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDG  157 (374)
T ss_pred             CCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCC
Confidence            34588999999999998888888887664 999999999998

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.44  E-value=1.5e-12  Score=117.59  Aligned_cols=143  Identities=18%  Similarity=0.174  Sum_probs=78.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc-cccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .+||+||||||+|++||+.|+++|++|+||||... +|..... .....                ..+.++...+... +
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~-~G~k~~~~~~~~~----------------~~l~~l~~~~~~~-i   64 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE-PGAKPCCGGGLSP----------------RALEELIPDFDEE-I   64 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCC-CCCCccccceech----------------hhHHHhCCCcchh-h
Confidence            48999999999999999999999999999999753 5543321 10100                0000111110000 0


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEE-eCccceeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLS-ENVKLRGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~-~~~~~~~~a  245 (253)
                      ..........+.........+. ...|.-  ....+.+.|+++..  |++++.++.|..+..+++++.+. ..++.+++|
T Consensus        65 ~~~v~~~~~~~~~~~~~~~~~~-~~~y~v--~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a  141 (396)
T COG0644          65 ERKVTGARIYFPGEKVAIEVPV-GEGYIV--DRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRA  141 (396)
T ss_pred             heeeeeeEEEecCCceEEecCC-CceEEE--EhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEc
Confidence            0000000000000000111111 011111  12333333443322  79999999999999988776544 344468999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      ++||.|+|
T Consensus       142 ~~vI~AdG  149 (396)
T COG0644         142 KVVIDADG  149 (396)
T ss_pred             CEEEECCC
Confidence            99999998

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.44  E-value=1.9e-12  Score=117.39  Aligned_cols=52  Identities=10%  Similarity=-0.051  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          202 RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..+.+.|.+.++...++++++|++|+.++++|.+.++++.+++||.||+|||
T Consensus       105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG  156 (414)
T TIGR03219       105 ADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADG  156 (414)
T ss_pred             HHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCC
Confidence            5677777777766778999999999988888999888888899999999998

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.44  E-value=3.5e-12  Score=115.45  Aligned_cols=33  Identities=39%  Similarity=0.789  Sum_probs=31.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||+|||||++|+++|++|++.|.+|+||||+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            599999999999999999999999999999975

>PRK07190 hypothetical protein; Provisional

Probab=99.44  E-value=1.6e-12  Score=120.20  Aligned_cols=149  Identities=19%  Similarity=0.228  Sum_probs=78.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCC-CCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG-LGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .+||+|||||++||++|+.|+++|++|+||||.... ..++...  .....      ..++..     ..+.+.+...+.
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~--l~~~t------le~L~~-----lGl~~~l~~~~~   71 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADA--LNART------LQLLEL-----VDLFDELYPLGK   71 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceE--eCHHH------HHHHHh-----cChHHHHHhhCc
Confidence            379999999999999999999999999999997531 1121100  00000      000000     001111111110


Q ss_pred             ----cccccccccceeeCCe-eeeCCCCC-Ccc--ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc
Q 047483          169 ----VRPWEGVIGELEVGGQ-FTPFPSSP-PKY--IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK  240 (253)
Q Consensus       169 ----~~~~~~~~~~~~~~~~-~~~~~~~~-~~~--~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~  240 (253)
                          ...|... ..+..... +....... +.+  .....+..++...+++. |++|+++++|++++++++++.+...++
T Consensus        72 ~~~~~~~~~~g-~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~v~v~~~~g  149 (487)
T PRK07190         72 PCNTSSVWANG-KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAGCLTTLSNG  149 (487)
T ss_pred             cceeEEEecCC-ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCeeEEEECCC
Confidence                0111100 00000000 00000000 000  11111233333323333 699999999999999888887776666


Q ss_pred             ceeecCEEEEcCC
Q 047483          241 LRGQFDVVVIAHN  253 (253)
Q Consensus       241 ~~~~ad~VV~AtG  253 (253)
                      .+++|++||.|||
T Consensus       150 ~~v~a~~vVgADG  162 (487)
T PRK07190        150 ERIQSRYVIGADG  162 (487)
T ss_pred             cEEEeCEEEECCC
Confidence            7899999999998

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.44  E-value=1.2e-12  Score=117.93  Aligned_cols=40  Identities=5%  Similarity=-0.017  Sum_probs=36.6

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|++++++++.+.++.+++..++||.||.|||
T Consensus       125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG  164 (403)
T PRK07333        125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADG  164 (403)
T ss_pred             CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCC
Confidence            6999999999999988888888877777899999999998

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.44  E-value=2e-12  Score=111.15  Aligned_cols=142  Identities=11%  Similarity=0.090  Sum_probs=75.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|+++|++|+|+|++.. .+....+.......      ...+.....   .....        
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~-~~~~~~~~~~~~~~------~~~l~~~~~---~~~~~--------   62 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF-PRYKPCGGALSPRV------LEELDLPLE---LIVNL--------   62 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC-CCcccccCccCHhH------HHHhcCCch---hhhhh--------
Confidence            5999999999999999999999999999999853 32211111111000      000000000   00000        


Q ss_pred             cccccccceeeCC-e-eeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC-ccceeecCE
Q 047483          171 PWEGVIGELEVGG-Q-FTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN-VKLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~-~~~~~~ad~  247 (253)
                       +... ......+ . ..+.+......+....+.+.+...+.+. +++++++++|++++.+++.+.+..+ ++.+++||+
T Consensus        63 -~~~~-~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~  139 (295)
T TIGR02032        63 -VRGA-RFFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKI  139 (295)
T ss_pred             -eeeE-EEEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCE
Confidence             0000 0000000 0 0111100001111112333333333332 6999999999999988887766543 345799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       140 vv~a~G  145 (295)
T TIGR02032       140 VIGADG  145 (295)
T ss_pred             EEECCC
Confidence            999998

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02568 polyamine oxidase

Probab=99.44  E-value=5.1e-12  Score=117.94  Aligned_cols=55  Identities=11%  Similarity=-0.011  Sum_probs=47.7

Q ss_pred             CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483          198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At  252 (253)
                      ..++..+++.|.+..++..|++|++|++|++.+++|.|++.++..+.||+||+|.
T Consensus       238 ~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTv  292 (539)
T PLN02568        238 AKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTV  292 (539)
T ss_pred             CCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcC
Confidence            3468889999988876567999999999999999999988887789999999985

>PRK06834 hypothetical protein; Provisional

Probab=99.43  E-value=2.5e-12  Score=118.94  Aligned_cols=146  Identities=18%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCC--CCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG--LGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      +||+|||||++|+++|+.|+++|++|+|||+....  .+.+...  +...      ....+..     ..+.+.+.+.+.
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~--l~~~------s~~~L~~-----lGl~~~l~~~~~   70 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGG--LHAR------TLEVLDQ-----RGIADRFLAQGQ   70 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceee--ECHH------HHHHHHH-----cCcHHHHHhcCC
Confidence            79999999999999999999999999999997531  1111100  0000      0000000     001111111110


Q ss_pred             cccccccccceeeCCeeeeCCCC--CCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSS--PPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD  246 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad  246 (253)
                      ...... ......  .+...+..  ....+....+.+++...+++. +++|+++++|++++++++++.++..++.+++||
T Consensus        71 ~~~~~~-~~~~~~--~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~  146 (488)
T PRK06834         71 VAQVTG-FAATRL--DISDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQ  146 (488)
T ss_pred             ccccce-eeeEec--ccccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence            000000 000000  00000000  000011112333333333333 699999999999999888888877666789999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      +||.|+|
T Consensus       147 ~vVgADG  153 (488)
T PRK06834        147 YLVGCDG  153 (488)
T ss_pred             EEEEecC
Confidence            9999998

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.43  E-value=1.5e-12  Score=116.94  Aligned_cols=53  Identities=11%  Similarity=0.048  Sum_probs=40.0

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCe-EEEEeCccce-eecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGM-WHLSENVKLR-GQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~-~~ad~VV~AtG  253 (253)
                      ...+..+|++.+  .|+++++|++|++|++.+++ +.+.+.++.+ ++|+.||.|.|
T Consensus       152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AG  208 (429)
T COG0579         152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAG  208 (429)
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCc
Confidence            455555555533  27999999999999998884 5555656555 99999999987

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.43  E-value=1.6e-12  Score=116.46  Aligned_cols=52  Identities=10%  Similarity=0.147  Sum_probs=41.4

Q ss_pred             HHHHHHHHhh---cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          202 RPLADSLLAQ---TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..+.+.|.+.   .++++++++++|++++.++++|.++++++.+++||.||+|+|
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG  159 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADG  159 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecC
Confidence            3444444443   237999999999999988888888877777899999999998

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06185 hypothetical protein; Provisional

Probab=99.42  E-value=1.8e-12  Score=117.21  Aligned_cols=35  Identities=34%  Similarity=0.567  Sum_probs=32.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .++||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            45899999999999999999999999999999974

>PRK10015 oxidoreductase; Provisional

Probab=99.42  E-value=1.1e-12  Score=119.63  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=32.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||||++|+++|+.|+++|++|+||||...
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~   39 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS   39 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            48999999999999999999999999999999753

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.42  E-value=2.6e-12  Score=115.29  Aligned_cols=39  Identities=18%  Similarity=0.014  Sum_probs=34.4

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++ ++.|++++.+++.+.++++++.+++||.||+|+|
T Consensus       126 ~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG  164 (388)
T PRK07608        126 NLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADG  164 (388)
T ss_pred             CcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCC
Confidence            48888 9999999888888888877777899999999998

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.9e-12  Score=104.90  Aligned_cols=131  Identities=21%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +.||+|||||++||+|||+|+++|++|+|||++...-||.|++-..-+.         ..  -.+...++++++.   + 
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~---------iV--v~~~a~~iL~e~g---I-   94 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNK---------IV--VREEADEILDEFG---I-   94 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccce---------ee--ecchHHHHHHHhC---C-
Confidence            3799999999999999999999999999999985434455544322110         00  0122234444420   0 


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHh-hcC-CcEEEcCeEEEEEEEeCC-e-------EEEE---
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLA-QTS-MVSIVRPCWISNLQPFNG-M-------WHLS---  236 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~-gv~i~~~t~V~~i~~~~~-~-------~~v~---  236 (253)
                                    .+.+...   .|.-.+. ..++..|+. .+. |++|+..+.|+++...++ +       |...   
T Consensus        95 --------------~ye~~e~---g~~v~ds-~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~  156 (262)
T COG1635          95 --------------RYEEEED---GYYVADS-AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMA  156 (262)
T ss_pred             --------------cceecCC---ceEEecH-HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhc
Confidence                          1111111   1111111 222222222 222 699999999999976555 2       2211   


Q ss_pred             --eCccceeecCEEEEcCC
Q 047483          237 --ENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       237 --~~~~~~~~ad~VV~AtG  253 (253)
                        +-|--.++|++||-|||
T Consensus       157 ~lhvDPl~i~a~~VvDaTG  175 (262)
T COG1635         157 GLHVDPLTIRAKAVVDATG  175 (262)
T ss_pred             ccccCcceeeEEEEEeCCC
Confidence              11235789999999998

>PRK07208 hypothetical protein; Provisional

Probab=99.41  E-value=5.1e-12  Score=116.66  Aligned_cols=73  Identities=30%  Similarity=0.345  Sum_probs=57.0

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++..||+|||||++||++|+.|+++|++|+|+|++. ..||++.+....  ++.+|.|.+++....+.+.++++++
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~-~~GG~~~s~~~~--g~~~d~G~h~~~~~~~~~~~l~~~l   74 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP-VVGGISRTVTYK--GNRFDIGGHRFFSKSPEVMDLWNEI   74 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-CCCceeeeeccC--CceEccCCceeccCCHHHHHHHHHh
Confidence            445799999999999999999999999999999985 589988765443  4567777777665555555555544

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.40  E-value=7.9e-12  Score=113.21  Aligned_cols=52  Identities=15%  Similarity=-0.042  Sum_probs=39.3

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+..  .|++|+++++|++|+.+++.+. +.+ +++++.||.||+|+|
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t-~~~~~~a~~VV~a~G  254 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQT-GGGVITADAYVVALG  254 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEe-CCcEEeCCEEEECCC
Confidence            455666655433  2799999999999998877764 444 456899999999998

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.40  E-value=4.3e-12  Score=109.52  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=73.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|..|++.|++|+|+|++.  .||.+.....                                   
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~--~gg~~~~~~~-----------------------------------   43 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME--PGGQLTTTTE-----------------------------------   43 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC--CCcceeeccc-----------------------------------
Confidence            589999999999999999999999999999874  5654321100                                   


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                    +..+++.. .......+...++..+++. ++++++ ++|++++..++.|.+..+++..+++|.||+
T Consensus        44 --------------~~~~~~~~-~~~~~~~~~~~l~~~~~~~-gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~lii  106 (300)
T TIGR01292        44 --------------VENYPGFP-EGISGPELMEKMKEQAVKF-GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVII  106 (300)
T ss_pred             --------------ccccCCCC-CCCChHHHHHHHHHHHHHc-CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEE
Confidence                          00000000 0000001223333333343 588888 899999988888888877767899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       107 AtG  109 (300)
T TIGR01292       107 ATG  109 (300)
T ss_pred             CCC
Confidence            998

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR00275 flavoprotein, HI0933 family

Probab=99.39  E-value=2.4e-12  Score=116.36  Aligned_cols=147  Identities=18%  Similarity=0.292  Sum_probs=79.3

Q ss_pred             EEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc----cc-cCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           94 GIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT----RM-IGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        94 ~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      +|||||++||++|+.|+++|++|+|+||+.. .|+.+..    +. +.... ..+.....+......+...+..+.... 
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~-~G~k~~~sG~grcn~tn~~-~~~~~~~~~~~~~~~~~~~l~~~~~~d-   77 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK-IGKKLLISGGGRCNLTNSC-PTPEFVAYYPRNGKFLRSALSRFSNKD-   77 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc-ccccccccCCceEEccCCC-cchhHHHhcCCCcHHHHHHHHhCCHHH-
Confidence            6999999999999999999999999999863 5543211    10 00000 000000111111111112222111111 


Q ss_pred             ccccccccc-c--eeeCCeeeeCCCCCCccccCCChHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCcccee
Q 047483          169 VRPWEGVIG-E--LEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRG  243 (253)
Q Consensus       169 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~  243 (253)
                      ...|....+ .  ....+.++|...         ....+.+.+.+.+  .+++++++++|++++++++.|.+.. ++..+
T Consensus        78 ~~~~~~~~Gv~~~~~~~g~~~p~~~---------~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i  147 (400)
T TIGR00275        78 LIDFFESLGLELKVEEDGRVFPCSD---------SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEY  147 (400)
T ss_pred             HHHHHHHcCCeeEEecCCEeECCCC---------CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEE
Confidence            111211111 1  111222332221         1234444444332  2699999999999988777887766 45689


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      .+|.||+|+|
T Consensus       148 ~ad~VIlAtG  157 (400)
T TIGR00275       148 EADKVILATG  157 (400)
T ss_pred             EcCEEEECCC
Confidence            9999999998

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.39  E-value=3.3e-12  Score=115.39  Aligned_cols=33  Identities=36%  Similarity=0.535  Sum_probs=31.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||++||++|+.|+++|++|+|+|+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ   35 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            589999999999999999999999999999975

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.39  E-value=6.5e-12  Score=106.85  Aligned_cols=38  Identities=39%  Similarity=0.686  Sum_probs=34.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||||++|+++|+.|++.|++|+|+|+... .||
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~-~Gg   62 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS-FGG   62 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCC
Confidence            38999999999999999999999999999999854 554

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.38  E-value=7.3e-12  Score=106.30  Aligned_cols=38  Identities=37%  Similarity=0.624  Sum_probs=34.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||||++||++|+.|+++|++|+|+||+.. .|+
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~-~Gg   58 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA-FGG   58 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCc
Confidence            38999999999999999999999999999999864 443

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06126 hypothetical protein; Provisional

Probab=99.38  E-value=7.9e-12  Score=117.25  Aligned_cols=35  Identities=46%  Similarity=0.714  Sum_probs=32.6

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .++||+|||||++||++|+.|+++|++|+||||..
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            34899999999999999999999999999999874

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.37  E-value=7.5e-12  Score=98.62  Aligned_cols=147  Identities=20%  Similarity=0.235  Sum_probs=81.3

Q ss_pred             EEECcCHHHHHHHHHHhHc-----CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           94 GIIGGGMAGLACALSLDKR-----GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        94 ~iiG~G~~G~~~a~~l~~~-----g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      +|||+|++|++++.+|.++     ..+|+|||+...+.|+.+.....+  ..........+......-         ...
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~--~~llN~~a~~~s~~~~~~---------~~~   69 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPP--SHLLNTPADQMSLFPDDP---------GDD   69 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCCh--HHhhcccccccccccccC---------CCC
Confidence            5999999999999999887     579999999754344444332111  111111111111100000         011


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEE-cCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIV-RPCWISNLQPFNGMWHLSENVKLRGQFD  246 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~-~~t~V~~i~~~~~~~~v~~~~~~~~~ad  246 (253)
                      +.+|...... +.. .........++.....-+...++.+.+..+ +++|. ...+|++|+..+++|.+.++++..+.||
T Consensus        70 f~~Wl~~~~~-~~~-~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d  147 (156)
T PF13454_consen   70 FVDWLRANGA-DEA-EEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD  147 (156)
T ss_pred             HHHHHHhcCc-ccc-cccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence            1122211110 000 000011112333333334555555555544 44443 4679999999999999888898999999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       148 ~VvLa~G  154 (156)
T PF13454_consen  148 AVVLATG  154 (156)
T ss_pred             EEEECCC
Confidence            9999998

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.37  E-value=7.1e-12  Score=113.33  Aligned_cols=34  Identities=41%  Similarity=0.593  Sum_probs=31.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-CC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-GV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g~-~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|++|+++ |. +|+|||+..
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            48999999999999999999995 85 999999974

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.37  E-value=1.5e-11  Score=114.31  Aligned_cols=37  Identities=22%  Similarity=0.366  Sum_probs=33.9

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ...+||+|||||++|+++|+.|+++|++|+|+||++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~   40 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL   40 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3458999999999999999999999999999999754

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.36  E-value=1.7e-11  Score=109.30  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      +||+|||||++|+++|++|+++|++|+|||+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4899999999999999999999999999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08244 hypothetical protein; Provisional

Probab=99.35  E-value=7.3e-12  Score=116.13  Aligned_cols=145  Identities=20%  Similarity=0.204  Sum_probs=76.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCC-CCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG-LGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +||+||||||+||++|+.|+++|++|+||||.+.. ..++.  ..+...      ....+..     ..+.+++...+..
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra--~~l~~~------~~e~l~~-----lGl~~~l~~~~~~   69 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKA--LTLHPR------TLEILDM-----RGLLERFLEKGRK   69 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce--eEecHH------HHHHHHh-----cCcHHHHHhhccc
Confidence            79999999999999999999999999999997531 01110  000000      0000000     0001111111100


Q ss_pred             -c--cccccccceeeCCeeeeCCCCCCc-c-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC--cc-c
Q 047483          170 -R--PWEGVIGELEVGGQFTPFPSSPPK-Y-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN--VK-L  241 (253)
Q Consensus       170 -~--~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~--~~-~  241 (253)
                       .  .+......+    .+.......+. + +....+.+++...+++. +++++++++|++++++++++.+...  ++ .
T Consensus        70 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~  144 (493)
T PRK08244         70 LPSGHFAGLDTRL----DFSALDTSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGVEVVVRGPDGLR  144 (493)
T ss_pred             ccceEEecccccC----CcccCCCCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCeEEEEEEeCCccE
Confidence             0  000000000    00000000000 1 11112344444444443 6999999999999988888766532  33 4


Q ss_pred             eeecCEEEEcCC
Q 047483          242 RGQFDVVVIAHN  253 (253)
Q Consensus       242 ~~~ad~VV~AtG  253 (253)
                      +++||+||.|||
T Consensus       145 ~i~a~~vVgADG  156 (493)
T PRK08244        145 TLTSSYVVGADG  156 (493)
T ss_pred             EEEeCEEEECCC
Confidence            799999999998

>PLN02463 lycopene beta cyclase

Probab=99.35  E-value=1.6e-11  Score=112.09  Aligned_cols=136  Identities=17%  Similarity=0.187  Sum_probs=76.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCC-ccccccccceeccCchhHHHHHHhhhhccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQ-PLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+. ..       .+.. +...+    .+.  ...+.+.+.       
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~-~~-------~p~~~g~w~~----~l~--~lgl~~~l~-------   86 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL-SI-------WPNNYGVWVD----EFE--ALGLLDCLD-------   86 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc-ch-------hccccchHHH----HHH--HCCcHHHHH-------
Confidence            38999999999999999999999999999998642 10       0000 00000    000  000011111       


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD  246 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad  246 (253)
                       ..|......++..... .. .  ..|.. ..-..+.+.|.+++.  +++++ ..+|++|+..++.+.|+++++.+++||
T Consensus        87 -~~w~~~~v~~~~~~~~-~~-~--~~y~~-V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~  159 (447)
T PLN02463         87 -TTWPGAVVYIDDGKKK-DL-D--RPYGR-VNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQAS  159 (447)
T ss_pred             -hhCCCcEEEEeCCCCc-cc-c--Cccee-EEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcC
Confidence             1222211111110000 00 0  11111 112333344444332  68886 579999998888888888887799999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||.|+|
T Consensus       160 lVI~AdG  166 (447)
T PLN02463        160 LVLDATG  166 (447)
T ss_pred             EEEECcC
Confidence            9999998

>PRK06996 hypothetical protein; Provisional

Probab=99.35  E-value=1.1e-11  Score=111.93  Aligned_cols=40  Identities=10%  Similarity=-0.130  Sum_probs=34.9

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCcc---ceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVK---LRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~---~~~~ad~VV~AtG  253 (253)
                      +++++++++|+++++++++|+++..++   .+++||+||.|||
T Consensus       129 g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG  171 (398)
T PRK06996        129 PVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG  171 (398)
T ss_pred             CCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence            589999999999998888998876543   5899999999998

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.35  E-value=6.8e-12  Score=114.67  Aligned_cols=40  Identities=13%  Similarity=0.063  Sum_probs=34.3

Q ss_pred             CcEEEcCeEEEEEEEe-------CCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPF-------NGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~-------~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|++++.+       ++.+.+++.++.+++||+||.|||
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG  180 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADG  180 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecC
Confidence            5899999999999752       456778777888999999999998

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.34  E-value=1.4e-11  Score=115.60  Aligned_cols=144  Identities=16%  Similarity=0.210  Sum_probs=77.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh------
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG------  162 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  162 (253)
                      ..+||+|||||++||++|+.|+++|++|+||||... .........+...                 -.++++.      
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~-~~~~~ra~~l~~~-----------------~~~~l~~lGl~~~   83 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT-LSTGSRAICFAKR-----------------SLEIFDRLGCGER   83 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC-CCCCCeEEEEcHH-----------------HHHHHHHcCCcHH
Confidence            347999999999999999999999999999999853 2111001111100                 0111111      


Q ss_pred             hhhccccccccccccceeeCCeee--eC---CCC-CCccc--cCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEE
Q 047483          163 WLERGLVRPWEGVIGELEVGGQFT--PF---PSS-PPKYI--GVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH  234 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~-~~~~~--~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~  234 (253)
                      +...+.  .|.... .+...+...  ..   .+. .+.+.  ....+..++...+.+.++++|+++++|++++.+++++.
T Consensus        84 l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~  160 (547)
T PRK08132         84 MVDKGV--SWNVGK-VFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT  160 (547)
T ss_pred             HHhhCc--eeecee-EEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE
Confidence            101110  010000 000000110  00   000 01111  11123344444444455699999999999998888876


Q ss_pred             EEe--Cccc-eeecCEEEEcCC
Q 047483          235 LSE--NVKL-RGQFDVVVIAHN  253 (253)
Q Consensus       235 v~~--~~~~-~~~ad~VV~AtG  253 (253)
                      +..  .++. +++||+||.|||
T Consensus       161 v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        161 LTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEECCCCcEEEEeCEEEECCC
Confidence            653  2333 689999999998

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.34  E-value=1.2e-11  Score=114.91  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=34.5

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      |+..+||+|||||++|+++|+.|+++|++|+||||+..
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~   40 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL   40 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            34558999999999999999999999999999999854

>PLN02676 polyamine oxidase

Probab=99.33  E-value=4.5e-11  Score=110.60  Aligned_cols=54  Identities=9%  Similarity=-0.063  Sum_probs=45.9

Q ss_pred             CChHHHHHHHHhhcC--------CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483          199 NGMRPLADSLLAQTS--------MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~--------gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At  252 (253)
                      .+++++.+.|.+.+.        +.+|++|++|++|++.++++.|++.++.+++||+||+|.
T Consensus       221 ~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtv  282 (487)
T PLN02676        221 RGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSV  282 (487)
T ss_pred             CCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEcc
Confidence            468888888888652        257999999999999988999988887789999999985

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.33  E-value=6.5e-12  Score=116.22  Aligned_cols=54  Identities=35%  Similarity=0.540  Sum_probs=44.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCcccccccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA  146 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~  146 (253)
                      .+||+|||||+.||++|..|+++|++|+||||+. ..||+..+....  ++.||.|.
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~-~~GG~a~t~e~~--Gf~fd~G~   56 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND-RVGGRARTFELD--GFRFDTGP   56 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecC-CCCcceEEEecc--ceEeccCc
Confidence            3899999999999999999999999999999985 599987765554  44455444

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.33  E-value=3e-11  Score=113.31  Aligned_cols=35  Identities=29%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||++..
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~   40 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI   40 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            38999999999999999999999999999999753

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.32  E-value=2.8e-11  Score=107.78  Aligned_cols=53  Identities=15%  Similarity=0.093  Sum_probs=45.1

Q ss_pred             CChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483          199 NGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At  252 (253)
                      .+++.+.+++.++.. -.|.++.+|.+|.+.+++++|+..+.+++.+|+||++.
T Consensus       206 GGmd~la~Afa~ql~-~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~ti  258 (450)
T COG1231         206 GGMDQLAEAFAKQLG-TRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTI  258 (450)
T ss_pred             ccHHHHHHHHHHHhh-ceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEec
Confidence            457888888888765 68999999999999999999987776799999999873

>PRK11445 putative oxidoreductase; Provisional

Probab=99.32  E-value=1.5e-11  Score=109.20  Aligned_cols=40  Identities=10%  Similarity=-0.044  Sum_probs=34.0

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEe-Cccc--eeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSE-NVKL--RGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~-~~~~--~~~ad~VV~AtG  253 (253)
                      ++++++++.|+++++++++|.+.. +++.  +++||.||.|||
T Consensus       112 gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG  154 (351)
T PRK11445        112 SVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADG  154 (351)
T ss_pred             CCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCC
Confidence            699999999999998888888764 3443  689999999998

>PRK07538 hypothetical protein; Provisional

Probab=99.32  E-value=2e-11  Score=110.66  Aligned_cols=32  Identities=44%  Similarity=0.802  Sum_probs=30.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ||+|||||++||++|+.|+++|++|+|||+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   33 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP   33 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            89999999999999999999999999999975

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.31  E-value=1.2e-11  Score=100.51  Aligned_cols=129  Identities=21%  Similarity=0.271  Sum_probs=67.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC-CccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG-RMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +||+|||||++||++|+.|++.|++|+|||++.. .|| .|++-..      |.   ...-  .+....+++++.   + 
T Consensus        18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~-~GGg~~~Gg~l------f~---~iVV--q~~a~~iL~elg---i-   81 (230)
T PF01946_consen   18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS-PGGGMWGGGML------FN---KIVV--QEEADEILDELG---I-   81 (230)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS--BTTTTS-CTT------------EEE--ETTTHHHHHHHT-----
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC-CCccccccccc------cc---hhhh--hhhHHHHHHhCC---c-
Confidence            8999999999999999999999999999999854 554 4433211      11   1111  111233444420   0 


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhh-c-CCcEEEcCeEEEEEEEeC-CeEE---EEe------
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQ-T-SMVSIVRPCWISNLQPFN-GMWH---LSE------  237 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~-~gv~i~~~t~V~~i~~~~-~~~~---v~~------  237 (253)
                                    .+.++.   ..+.. .....+...|+.+ + .|++|+..+.|+++...+ +.+.   +..      
T Consensus        82 --------------~y~~~~---~g~~v-~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~  143 (230)
T PF01946_consen   82 --------------PYEEYG---DGYYV-ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMA  143 (230)
T ss_dssp             ----------------EE-S---SEEEE-S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT
T ss_pred             --------------eeEEeC---CeEEE-EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHh
Confidence                          111111   11111 1222333333322 1 389999999999997665 4432   211      


Q ss_pred             ---CccceeecCEEEEcCC
Q 047483          238 ---NVKLRGQFDVVVIAHN  253 (253)
Q Consensus       238 ---~~~~~~~ad~VV~AtG  253 (253)
                         -|--.++|+.||-|||
T Consensus       144 glHvDPl~i~ak~ViDaTG  162 (230)
T PF01946_consen  144 GLHVDPLTIRAKVVIDATG  162 (230)
T ss_dssp             --T-B-EEEEESEEEE---
T ss_pred             hcCCCcceEEEeEEEeCCC
Confidence               1224799999999998

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.31  E-value=2.2e-11  Score=112.20  Aligned_cols=36  Identities=31%  Similarity=0.448  Sum_probs=33.4

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +.++||+|||+|++|+++|+.|+++|.+|+||||..
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~   37 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP   37 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            345899999999999999999999999999999975

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.31  E-value=1.6e-11  Score=113.34  Aligned_cols=38  Identities=16%  Similarity=0.161  Sum_probs=32.4

Q ss_pred             cEEEcCeEEEEEEEe-CCeEEEEeCccceeecCEEEEcCC
Q 047483          215 VSIVRPCWISNLQPF-NGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       215 v~i~~~t~V~~i~~~-~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ++|+++++|++|+++ ++.|.|.+.+ +.++||.||+|+|
T Consensus       232 v~i~~~t~V~~I~~~~~~~~~V~T~~-G~i~A~~VVvaAG  270 (497)
T PTZ00383        232 ISINLNTEVLNIERSNDSLYKIHTNR-GEIRARFVVVSAC  270 (497)
T ss_pred             EEEEeCCEEEEEEecCCCeEEEEECC-CEEEeCEEEECcC
Confidence            789999999999987 5568887655 5899999999997

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.31  E-value=2.6e-11  Score=108.72  Aligned_cols=136  Identities=19%  Similarity=0.164  Sum_probs=78.6

Q ss_pred             cEEEECcCHHHHHHHHHH--hHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           92 HVGIIGGGMAGLACALSL--DKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l--~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ||+|||||++|+++|++|  ++.|.+|+|+|+... .+ ...           +....++......+.+++..       
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~-~~-~~~-----------~~tW~~~~~~~~~~~~~v~~-------   60 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK-PP-WPN-----------DRTWCFWEKDLGPLDSLVSH-------   60 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc-cc-ccC-----------CcccccccccccchHHHHhe-------
Confidence            899999999999999999  777999999999753 21 000           00011111111112222222       


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVV  248 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~V  248 (253)
                       .|......+........  .  ..|... .-..+.+.+.+++. +..++.++.|++|+..++.+.+.++++..++|+.|
T Consensus        61 -~w~~~~v~~~~~~~~~~--~--~~Y~~i-~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~V  134 (374)
T PF05834_consen   61 -RWSGWRVYFPDGSRILI--D--YPYCMI-DRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVV  134 (374)
T ss_pred             -ecCceEEEeCCCceEEc--c--cceEEE-EHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEE
Confidence             33322111111111100  0  122111 11333333444333 35677889999999988888888888889999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |.|+|
T Consensus       135 vDa~g  139 (374)
T PF05834_consen  135 VDARG  139 (374)
T ss_pred             EECCC
Confidence            99987

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.30  E-value=2.7e-11  Score=109.01  Aligned_cols=32  Identities=28%  Similarity=0.613  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            59999999999999999999999999999996

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.30  E-value=3.5e-11  Score=108.44  Aligned_cols=33  Identities=36%  Similarity=0.541  Sum_probs=31.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++|++|+|+|+..
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~   35 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            799999999999999999999999999999975

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.30  E-value=2.4e-11  Score=112.23  Aligned_cols=53  Identities=17%  Similarity=0.177  Sum_probs=39.0

Q ss_pred             hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeC-CeEEEEe---Ccc--ceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFN-GMWHLSE---NVK--LRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~-~~~~v~~---~~~--~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+...  |++|+++++|++|++++ +.|.+..   .++  ..++||+||+|+|
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG  237 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAG  237 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCC
Confidence            5666666655442  79999999999998864 4677652   222  3689999999987

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.29  E-value=4.4e-11  Score=113.26  Aligned_cols=52  Identities=13%  Similarity=-0.008  Sum_probs=41.8

Q ss_pred             HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          202 RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..+.+.|.+..+...++++++|++++..++.+.+.++++.++++|.||.|+|
T Consensus       194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG  245 (668)
T PLN02927        194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADG  245 (668)
T ss_pred             HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCC
Confidence            4455556665543357899999999988889988888878899999999998

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.28  E-value=3.4e-11  Score=111.87  Aligned_cols=55  Identities=13%  Similarity=0.021  Sum_probs=42.9

Q ss_pred             CChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEEEcCC
Q 047483          199 NGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+...+++.|.+.+.  |++|+++++|++|..+++. +.|..+++..+.||.||+|.+
T Consensus       216 gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~  273 (502)
T TIGR02734       216 GGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNAD  273 (502)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCc
Confidence            356777777766443  7999999999999887665 567677777899999999864

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.28  E-value=1.1e-11  Score=83.67  Aligned_cols=65  Identities=37%  Similarity=0.571  Sum_probs=51.8

Q ss_pred             EECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccC--chhHHHHHHh
Q 047483           95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN--DSRFHELVDG  162 (253)
Q Consensus        95 iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  162 (253)
                      |||||++||++|+.|+++|++|+|||+.+ ..||++.+...+  +..+|.+.+++...  .+.+.+++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~-~~GG~~~~~~~~--g~~~d~g~~~~~~~~~~~~~~~l~~~   67 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND-RLGGRARSFRIP--GYRFDLGAHYFFPPDDYPNLFRLLRE   67 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS-SSSGGGCEEEET--TEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc-ccCcceeEEEEC--CEEEeeccEEEeCCCCchHHHHHHcC
Confidence            89999999999999999999999999986 599999877664  47889998888763  3555665554

...

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=6.4e-11  Score=102.88  Aligned_cols=107  Identities=25%  Similarity=0.340  Sum_probs=70.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVK-STVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .+||+||||||+||++|.++++.+++ ++|+|+..  .||......                                  
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~--~gg~~~~~~----------------------------------   46 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE--PGGQLTKTT----------------------------------   46 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC--cCCccccce----------------------------------
Confidence            38999999999999999999999998 77777753  443221110                                  


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD  246 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad  246 (253)
                                     ....+++..    ....-..+.+.+.++.  .++++.. ..|.+++..++.+.|.++++. ++|+
T Consensus        47 ---------------~venypg~~----~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak  105 (305)
T COG0492          47 ---------------DVENYPGFP----GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAK  105 (305)
T ss_pred             ---------------eecCCCCCc----cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEe
Confidence                           011111111    1011244555544443  2577776 778888776667888777654 9999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|||
T Consensus       106 ~vIiAtG  112 (305)
T COG0492         106 AVIIATG  112 (305)
T ss_pred             EEEECcC
Confidence            9999998

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.26  E-value=1.4e-10  Score=106.90  Aligned_cols=32  Identities=16%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDT  121 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~  121 (253)
                      .+||+|||||++|+++|+.|++.  |.+|+|+||
T Consensus         6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            47999999999999999999998  899999999

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.26  E-value=9.5e-11  Score=105.25  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccccc
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP  171 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      ||+|||||++|+++|+.|++.|++|+|+|+.+. .++........   ..++         ...+.+.+.        ..
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~-~~~~~~~~~~~---~~~~---------~~~~~~~~~--------~~   59 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP-IPGNHTYGVWD---DDLS---------DLGLADCVE--------HV   59 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC-CCCCccccccH---hhhh---------hhchhhHHh--------hc
Confidence            799999999999999999999999999999753 44321110000   0000         000011111        12


Q ss_pred             ccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEe-CCeEEEEeCccceeecCEE
Q 047483          172 WEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPF-NGMWHLSENVKLRGQFDVV  248 (253)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~-~~~~~v~~~~~~~~~ad~V  248 (253)
                      |............. ..   ...|.. .....+.+.|.+++.  +++++ ..+|.+++.+ ++.|.+..+++..++|+.|
T Consensus        60 ~~~~~~~~~~~~~~-~~---~~~~~~-i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~V  133 (388)
T TIGR01790        60 WPDVYEYRFPKQPR-KL---GTAYGS-VDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLV  133 (388)
T ss_pred             CCCceEEecCCcch-hc---CCceeE-EcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEE
Confidence            22210000000000 00   011111 112333333433222  57776 5588898877 6678887777678999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |.|+|
T Consensus       134 I~A~G  138 (388)
T TIGR01790       134 IDARG  138 (388)
T ss_pred             EECCC
Confidence            99998

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.26  E-value=6.5e-11  Score=110.44  Aligned_cols=110  Identities=20%  Similarity=0.317  Sum_probs=76.6

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+|||||++|+++|.+|++.|++|+|+|+.   .||.+....    .  ++                         
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~---~GG~~~~~~----~--~~-------------------------  255 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER---FGGQVLDTM----G--IE-------------------------  255 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC---CCCeeeccC----c--cc-------------------------
Confidence            3589999999999999999999999999999863   566542100    0  00                         


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEE
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVV  248 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~V  248 (253)
                                     .+..++.     .....+...+...++++ +++++++++|++|.+.++.|.+...++..+.+|.|
T Consensus       256 ---------------~~~~~~~-----~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~v  314 (517)
T PRK15317        256 ---------------NFISVPE-----TEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTV  314 (517)
T ss_pred             ---------------ccCCCCC-----CCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEE
Confidence                           0000000     00011233333344444 59999999999999887888888777778999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|||
T Consensus       315 ViAtG  319 (517)
T PRK15317        315 ILATG  319 (517)
T ss_pred             EECCC
Confidence            99998

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.25  E-value=1.9e-10  Score=106.97  Aligned_cols=38  Identities=24%  Similarity=0.490  Sum_probs=34.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+|++|+++|+.+++.|.+|+||||... .||
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~-~GG   98 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV-AGG   98 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC-CCC
Confidence            48999999999999999999999999999999853 555

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.25  E-value=8e-11  Score=101.33  Aligned_cols=53  Identities=25%  Similarity=0.201  Sum_probs=44.0

Q ss_pred             CChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483          199 NGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At  252 (253)
                      .+-..+++.|..... .+|.++++|..|.+-.+++.++..+|..-++|.||+|+
T Consensus       217 ggS~~yvq~laa~~~-~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAt  269 (447)
T COG2907         217 GGSRAYVQRLAADIR-GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIAT  269 (447)
T ss_pred             cchHHHHHHHhcccc-ceeecCCceeeeeeCCCceEEecCCCCccccceeeeec
Confidence            345778887776653 57999999999999988888877778889999999987

>PLN02529 lysine-specific histone demethylase 1

Probab=99.24  E-value=3e-10  Score=108.85  Aligned_cols=60  Identities=35%  Similarity=0.467  Sum_probs=47.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCc--cccccccceec
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQP--LIFDHAAQFFT  150 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~--~~~~~~~~~~~  150 (253)
                      ..||+|||||++||++|..|+++|++|+|||++. .+||+..+......+  ..+|.|+.++.
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~-~~GG~~~t~~~~~~g~~~~~DlGaswi~  221 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN-RPGGRVYTQKMGRKGQFAAVDLGGSVIT  221 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc-cCcCceeeecccCCCCceEEecCCeecc
Confidence            4799999999999999999999999999999985 599988766543211  34566666654

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.23  E-value=2.2e-10  Score=102.52  Aligned_cols=35  Identities=43%  Similarity=0.713  Sum_probs=32.7

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...||+|||||++|+++|++|+++|.+|+|+|+..
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            34899999999999999999999999999999975

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.23  E-value=1.2e-10  Score=104.93  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=31.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS   35 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence            799999999999999999999999999999975

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.22  E-value=7.9e-11  Score=108.62  Aligned_cols=59  Identities=31%  Similarity=0.411  Sum_probs=46.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceec
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT  150 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      ..+|+|||||++||+||..|.+.|++|+|||+++ .+|||..+....... ..|.|..++.
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd-RvGGRI~t~~~~~~~-~vd~Gas~~~   73 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD-RVGGRIYTFKSEGGD-HVDLGASVLT   73 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC-CcCceeEEEecCCCC-eeecCCceec
Confidence            3799999999999999999999999999999985 699998876543221 3555555544

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.22  E-value=1.4e-10  Score=108.53  Aligned_cols=39  Identities=28%  Similarity=0.491  Sum_probs=34.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      .+||+|||||++|+.+|+.+++.|.+|+|+|++...+|+
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~   42 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ   42 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence            489999999999999999999999999999987444554

>PLN02697 lycopene epsilon cyclase

Probab=99.22  E-value=1.6e-10  Score=107.47  Aligned_cols=136  Identities=18%  Similarity=0.179  Sum_probs=75.2

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+... ....++        +..+    .+.  ...+.+.+.       
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p-~~~n~G--------vW~~----~l~--~lgl~~~i~-------  164 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FTNNYG--------VWED----EFK--DLGLEDCIE-------  164 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc-CCCccc--------cchh----HHH--hcCcHHHHH-------
Confidence            348999999999999999999999999999998532 111110        0000    000  000111111       


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEE-EeCccceeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHL-SENVKLRGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v-~~~~~~~~~a  245 (253)
                       ..|......++...... ..   ..|.. -.-..+.+.|.+++.  ++++ ++++|++|+.+++.+.+ ..+++.+++|
T Consensus       165 -~~w~~~~v~~~~~~~~~-~~---~~Yg~-V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A  237 (529)
T PLN02697        165 -HVWRDTIVYLDDDKPIM-IG---RAYGR-VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPC  237 (529)
T ss_pred             -hhcCCcEEEecCCceee-cc---CcccE-EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEEC
Confidence             12322211111110100 00   11110 112334444444332  6887 67899999887776653 4556678999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      +.||+|+|
T Consensus       238 ~lVI~AdG  245 (529)
T PLN02697        238 RLATVASG  245 (529)
T ss_pred             CEEEECCC
Confidence            99999998

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.21  E-value=1.6e-10  Score=103.24  Aligned_cols=57  Identities=30%  Similarity=0.557  Sum_probs=43.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccccccCCCccccccccceec
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT  150 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      .+|+|||||++||++|.+|.+.| .+|+|||..+ .+|||+.+..+.+.  .++.|+++..
T Consensus        22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d-RIGGRI~ti~~~d~--~ielGAqwih   79 (498)
T KOG0685|consen   22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASD-RIGGRIHTIPFADG--VIELGAQWIH   79 (498)
T ss_pred             ceEEEECCchHHHHHHHHHHHhCCceEEEEEecc-ccCceEeeEEcCCC--eEeecceeec
Confidence            58999999999999999999775 6899999875 69999877655432  3344444433

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.21  E-value=1.5e-11  Score=112.04  Aligned_cols=142  Identities=19%  Similarity=0.222  Sum_probs=35.8

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccccc
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP  171 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      ||||||||++|++||+.+++.|.+|+|+|+.. ..||........    .++ +  .+... .....+..++.+.-... 
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~-~lGG~~t~~~~~----~~~-~--~~~~~-~~~~gi~~e~~~~~~~~-   70 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG-FLGGMATSGGVS----PFD-G--NHDED-QVIGGIFREFLNRLRAR-   70 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS-SSTGGGGGSSS-----EET-T--EEHHH-HHHHHHHHHHHHST----
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCc-cCCCcceECCcC----Chh-h--cchhh-ccCCCHHHHHHHHHhhh-
Confidence            89999999999999999999999999999985 588755332211    010 0  00000 11122222221110000 


Q ss_pred             ccccccceeeCCeeeeCCCCCC-ccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE-EEEeC---ccceeecC
Q 047483          172 WEGVIGELEVGGQFTPFPSSPP-KYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW-HLSEN---VKLRGQFD  246 (253)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~-~v~~~---~~~~~~ad  246 (253)
                           ...    ......+|.. ..+....+..+++.++.+ .|++|++++.|.++..+++.+ .|...   +...++|+
T Consensus        71 -----~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~  140 (428)
T PF12831_consen   71 -----GGY----PQEDRYGWVSNVPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAK  140 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----ccc----ccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence                 000    0000011110 011112234555555544 369999999999999887553 23322   35689999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||.|||
T Consensus       141 ~~IDaTG  147 (428)
T PF12831_consen  141 VFIDATG  147 (428)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            9999997

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.21  E-value=1.8e-10  Score=107.40  Aligned_cols=110  Identities=15%  Similarity=0.267  Sum_probs=74.2

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+|||||++|+++|+.|++.|++|+|+|..   .||.+...    ..  +.                  .      
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~---~GG~~~~~----~~--~~------------------~------  257 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER---IGGQVKDT----VG--IE------------------N------  257 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC---CCCccccC----cC--cc------------------c------
Confidence            3589999999999999999999999999999852   56654210    00  00                  0      


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEE
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVV  248 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~V  248 (253)
                                      +...+..     ....+...+...+++. +++++++++|++|...++.+.+..+++..+.+|.|
T Consensus       258 ----------------~~~~~~~-----~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~l  315 (515)
T TIGR03140       258 ----------------LISVPYT-----TGSQLAANLEEHIKQY-PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSV  315 (515)
T ss_pred             ----------------ccccCCC-----CHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEE
Confidence                            0000000     0001122222223333 69999999999998877778887777778999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|||
T Consensus       316 IlAtG  320 (515)
T TIGR03140       316 IVATG  320 (515)
T ss_pred             EECCC
Confidence            99998

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02730 carot_isom carotene isomerase

Probab=99.20  E-value=1.3e-10  Score=107.88  Aligned_cols=55  Identities=15%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             CChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEEEcCC
Q 047483          199 NGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+...+++.|.+...  |++|+++++|++|..+++. +.|...++..++||.||+|.|
T Consensus       226 gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~  283 (493)
T TIGR02730       226 GGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNAT  283 (493)
T ss_pred             ChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCC
Confidence            356777777766543  7999999999999877554 456566777899999999865

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.20  E-value=1.6e-10  Score=105.85  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            899999999999999999999999999999974

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.20  E-value=1.5e-10  Score=110.28  Aligned_cols=36  Identities=25%  Similarity=0.370  Sum_probs=32.7

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~  123 (253)
                      +.++||+||||||+||++|+.|++. |++|+|||+.+
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence            3458999999999999999999995 99999999974

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.20  E-value=2e-10  Score=106.31  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|++|++.  |.+|+||||..
T Consensus         5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            37999999999999999999985  78999999974

>PRK09897 hypothetical protein; Provisional

Probab=99.20  E-value=2.2e-10  Score=106.61  Aligned_cols=154  Identities=19%  Similarity=0.213  Sum_probs=80.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCC-CCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLG-GRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      .+|+|||||++|+++|.+|.+.+  ++|+|||++.. .| |.......+...+.........    +....-+.+|....
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~-~G~G~ays~~~~~~~L~~N~~~~~~----p~~~~~f~~Wl~~~   76 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE-AGVGMPYSDEENSKMMLANIASIEI----PPIYCTYLEWLQKQ   76 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC-CCcceeecCCCChHHHHhccccccc----CCChHHHHHHhhhh
Confidence            48999999999999999998864  69999999743 55 3211110000000000000000    00011122222211


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--C--cEEEcCeEEEEEEEeCCeEEEEeCc-cce
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--M--VSIVRPCWISNLQPFNGMWHLSENV-KLR  242 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--g--v~i~~~t~V~~i~~~~~~~~v~~~~-~~~  242 (253)
                      ... |..... .+.  .........++......++..++.+.+.+.  |  +.++.+++|++|+..+++|.+.+++ +..
T Consensus        77 ~~~-~~~~~g-~~~--~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~  152 (534)
T PRK09897         77 EDS-HLQRYG-VKK--ETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPS  152 (534)
T ss_pred             hHH-HHHhcC-Ccc--eeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeE
Confidence            100 000000 000  000000111222222234555555555432  3  6788899999999988899887654 467


Q ss_pred             eecCEEEEcCC
Q 047483          243 GQFDVVVIAHN  253 (253)
Q Consensus       243 ~~ad~VV~AtG  253 (253)
                      +.||.||+|+|
T Consensus       153 i~aD~VVLAtG  163 (534)
T PRK09897        153 ETFDLAVIATG  163 (534)
T ss_pred             EEcCEEEECCC
Confidence            99999999998

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.19  E-value=2.4e-10  Score=103.68  Aligned_cols=36  Identities=44%  Similarity=0.800  Sum_probs=31.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ||+|||+|++||++|+.++++|.+|+|+||... .||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~-~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR-LGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG-GGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc-ccc
Confidence            899999999999999999999999999999853 455

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN03000 amine oxidase

Probab=99.19  E-value=6e-10  Score=107.66  Aligned_cols=60  Identities=32%  Similarity=0.431  Sum_probs=48.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCC--Cccccccccceec
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGP--QPLIFDHAAQFFT  150 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~~  150 (253)
                      ..+|+|||||++||.+|+.|.+.|++|+|+|++. .+||++.+.....  .+..+|.|+.++.
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~-riGGRi~T~~~~g~~~~~~~DlGas~i~  245 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK-RPGGRVYTKKMEANRVGAAADLGGSVLT  245 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC-cCCCCcceecccCCCCceEeecCCeEEe
Confidence            4799999999999999999999999999999985 5999988766432  1345566665554

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.18  E-value=3.8e-10  Score=108.83  Aligned_cols=51  Identities=10%  Similarity=-0.083  Sum_probs=42.7

Q ss_pred             CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483          198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At  252 (253)
                      ..++..+.++|++..   .|++|++|++|.+.+++|.+. .++.+++||+||+|.
T Consensus       433 ~GG~~~Li~aLa~~L---~I~ln~~V~~I~~~~dgV~V~-~~G~~~~AD~VIvTv  483 (808)
T PLN02328        433 PGGNDTFVRELAKDL---PIFYERTVESIRYGVDGVIVY-AGGQEFHGDMVLCTV  483 (808)
T ss_pred             CCcHHHHHHHHHhhC---CcccCCeeEEEEEcCCeEEEE-eCCeEEEcCEEEECC
Confidence            357889999998864   599999999999998888874 456789999999985

>PLN02985 squalene monooxygenase

Probab=99.18  E-value=5.5e-10  Score=103.96  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=32.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+||+|||||++|+++|+.|+++|++|+|+||..
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            34899999999999999999999999999999974

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.17  E-value=1.9e-10  Score=102.90  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=73.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ||+|||||++|+++|+.|++.  |++|+|+|+++. .++.. ...+             +....   .+....+...-..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~-~~~~~-tw~~-------------~~~~~---~~~~~~~~~~~v~   62 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT-IGGNH-TWSF-------------FDSDL---SDAQHAWLADLVQ   62 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC-CCCcc-ccee-------------ccccc---chhhhhhhhhhhe
Confidence            799999999999999999987  999999999753 33311 0011             10000   0011111111112


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                      ..|......+.......  .   ..|.... -..+.+.+.++++ ..++++++|+++  +.+++++  +++.+++|+.||
T Consensus        63 ~~W~~~~v~~~~~~~~l--~---~~Y~~I~-r~~f~~~l~~~l~-~~i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI  131 (370)
T TIGR01789        63 TDWPGYEVRFPKYRRKL--K---TAYRSMT-STRFHEGLLQAFP-EGVILGRKAVGL--DADGVDL--APGTRINARSVI  131 (370)
T ss_pred             EeCCCCEEECcchhhhc--C---CCceEEE-HHHHHHHHHHhhc-ccEEecCEEEEE--eCCEEEE--CCCCEEEeeEEE
Confidence            23433211111000000  0   1111111 1445555555554 337889999988  3455655  567889999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      .|+|
T Consensus       132 ~A~G  135 (370)
T TIGR01789       132 DCRG  135 (370)
T ss_pred             ECCC
Confidence            9997

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.17  E-value=2.6e-10  Score=104.09  Aligned_cols=34  Identities=35%  Similarity=0.526  Sum_probs=30.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|.+||++|+.+. .|.+|+|+||...
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~   37 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL   37 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence            489999999999999999984 7999999999853

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.17  E-value=3.1e-10  Score=106.72  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=69.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++||++|+.|+++|++|+|||++.  .||.+.....                                  
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~--~GG~~~~~~~----------------------------------   47 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD--FGGQITITSE----------------------------------   47 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--CCceEEeccc----------------------------------
Confidence            4899999999999999999999999999999863  6664321000                                  


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHH---HHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADS---LLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad  246 (253)
                                     ...+++..  ..   ....+++.   .+++. +++++ ++.|+++..+++.+.+.+.+ +.+.++
T Consensus        48 ---------------i~~~pg~~--~~---~~~~l~~~l~~~~~~~-gv~~~-~~~V~~i~~~~~~~~V~~~~-g~~~a~  104 (555)
T TIGR03143        48 ---------------VVNYPGIL--NT---TGPELMQEMRQQAQDF-GVKFL-QAEVLDVDFDGDIKTIKTAR-GDYKTL  104 (555)
T ss_pred             ---------------cccCCCCc--CC---CHHHHHHHHHHHHHHc-CCEEe-ccEEEEEEecCCEEEEEecC-CEEEEe
Confidence                           00000000  00   01222222   22333 57775 77899998777667776654 478999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|||
T Consensus       105 ~lVlATG  111 (555)
T TIGR03143       105 AVLIATG  111 (555)
T ss_pred             EEEECCC
Confidence            9999998

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK10262 thioredoxin reductase; Provisional

Probab=99.17  E-value=4.3e-10  Score=98.61  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=69.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++||++|..|+++|++|++||+..  .||.+....            .                      
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~--~gg~~~~~~------------~----------------------   49 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME--KGGQLTTTT------------E----------------------   49 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec--CCCceecCc------------e----------------------
Confidence            4899999999999999999999999999999652  566432110            0                      


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                     ++.+++.. .......+.+.+....+.+. .+++++ .|+.|+..++.|.+..+. ..+.+|.||
T Consensus        50 ---------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vi  110 (321)
T PRK10262         50 ---------------VENWPGDP-NDLTGPLLMERMHEHATKFE-TEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALI  110 (321)
T ss_pred             ---------------ECCCCCCC-CCCCHHHHHHHHHHHHHHCC-CEEEee-EEEEEEecCCeEEEEecC-CEEEECEEE
Confidence                           00001100 00000112233333333333 566665 577888878888886543 478999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|||
T Consensus       111 lAtG  114 (321)
T PRK10262        111 IATG  114 (321)
T ss_pred             ECCC
Confidence            9998

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.17  E-value=5.3e-10  Score=102.20  Aligned_cols=36  Identities=36%  Similarity=0.646  Sum_probs=32.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGG  128 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg  128 (253)
                      ||+|||+|++|+++|+.++++| .+|+||||... .||
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~-~gg   37 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV-IGG   37 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC-CCC
Confidence            7999999999999999999999 99999999853 444

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.15  E-value=7.1e-10  Score=100.21  Aligned_cols=33  Identities=27%  Similarity=0.549  Sum_probs=31.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+||||||+|+++|+.|+++|++|+|+||..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            489999999999999999999999999999974

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.14  E-value=4.7e-10  Score=103.38  Aligned_cols=33  Identities=48%  Similarity=0.866  Sum_probs=31.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||+|||+|++||++|+.+++.|.+|+|+||..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            699999999999999999999999999999974

>PLN02612 phytoene desaturase

Probab=99.13  E-value=2.2e-09  Score=101.18  Aligned_cols=72  Identities=22%  Similarity=0.316  Sum_probs=53.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ...+|+|||||++||++|++|.++|++|+|+|++. ..||+..+.... .+..+|.|.+++....+.+.+++++
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~-~~gG~~~s~~~~-~G~~~D~G~h~~~g~~~~~~~ll~e  163 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD-VLGGKVAAWKDE-DGDWYETGLHIFFGAYPNVQNLFGE  163 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-CCCCcceeeEcC-CCCEEcCCceEEeCCCchHHHHHHH
Confidence            34799999999999999999999999999999985 488887654321 2456777777666554444444443

>PTZ00367 squalene epoxidase; Provisional

Probab=99.13  E-value=7e-10  Score=104.12  Aligned_cols=34  Identities=35%  Similarity=0.478  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            4899999999999999999999999999999964

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.12  E-value=7.5e-10  Score=105.34  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=32.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||||++|+++|+.|+++|++|+|||++..
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~  105 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDF  105 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence            48999999999999999999999999999999854

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.12  E-value=7.7e-10  Score=105.01  Aligned_cols=34  Identities=32%  Similarity=0.532  Sum_probs=32.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~  124 (253)
                      +||+|||+|.+||++|+.+++.  |.+|+|+||+..
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            7999999999999999999998  999999999853

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.12  E-value=6.6e-10  Score=104.16  Aligned_cols=35  Identities=29%  Similarity=0.487  Sum_probs=32.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|++||++|+.+++.|.+|+|+||...
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~   50 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL   50 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence            38999999999999999999999999999999853

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.12  E-value=8.3e-10  Score=100.70  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=39.8

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      +.++||+|||+|++|+.+|..|++.|.+|+++|++. ..||++.+
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~-~yGG~~as   45 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNP-YYGGESAS   45 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCC-CcCccccc
Confidence            456999999999999999999999999999999986 58887764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.10  E-value=1.1e-09  Score=103.55  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      +||+|||+|++||+||+.+++.  |.+|+|+||..
T Consensus         5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~   39 (582)
T PRK09231          5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY   39 (582)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            7999999999999999999987  58999999975

>TIGR00551 nadB L-aspartate oxidase

Probab=99.10  E-value=8.6e-10  Score=102.23  Aligned_cols=33  Identities=36%  Similarity=0.524  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      +||+|||+|++||++|+.+++.|. |+|+||...
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~   35 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV   35 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence            799999999999999999999998 999999853

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.10  E-value=3.7e-10  Score=100.55  Aligned_cols=146  Identities=17%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccccc
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP  171 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      ||+|||||.+|+.||+.+++.|.+|+|+....+..|...-...+         +..    ....+..-++.+.  +..-.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsi---------gg~----~kg~L~~Eidalg--g~m~~   65 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSI---------GGI----AKGHLVREIDALG--GLMGR   65 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEE---------EST----THHHHHHHHHHTT---SHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhh---------ccc----cccchhHHHhhhh--hHHHH
Confidence            79999999999999999999999999994332223322111111         110    1111111111110  11100


Q ss_pred             cccccc-ceeeCCeeeeCCCCCCcc-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE-EEEeCccceeecCEE
Q 047483          172 WEGVIG-ELEVGGQFTPFPSSPPKY-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW-HLSENVKLRGQFDVV  248 (253)
Q Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~-~v~~~~~~~~~ad~V  248 (253)
                      +.+... .+.....-...+.+.+++ .....+...++..++..++++|+ +.+|++|..+++.+ -|.+.++..+.+|.|
T Consensus        66 ~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~v  144 (392)
T PF01134_consen   66 AADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAV  144 (392)
T ss_dssp             HHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEE
T ss_pred             HHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEE
Confidence            000000 000000000011121111 11112355566666666789987 57899998887765 466778889999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|||
T Consensus       145 VlaTG  149 (392)
T PF01134_consen  145 VLATG  149 (392)
T ss_dssp             EE-TT
T ss_pred             EEecc
Confidence            99998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.09  E-value=1.5e-09  Score=102.40  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~  124 (253)
                      +||+|||+|++||++|+.+++.  |.+|+|+||...
T Consensus         4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~   39 (580)
T TIGR01176         4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP   39 (580)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            7999999999999999999987  589999999753

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.09  E-value=1.1e-09  Score=103.36  Aligned_cols=32  Identities=34%  Similarity=0.564  Sum_probs=30.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ||+|||+|++||++|+.++++|.+|+|+||..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~   32 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY   32 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            79999999999999999999999999999975

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.09  E-value=1.3e-09  Score=100.55  Aligned_cols=42  Identities=31%  Similarity=0.558  Sum_probs=37.2

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.  ..||.+-.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~--~~GG~c~~   44 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG--KLGGTCLH   44 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc--CCCcceEc
Confidence            3589999999999999999999999999999986  37887643

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.09  E-value=6.5e-10  Score=97.94  Aligned_cols=34  Identities=41%  Similarity=0.850  Sum_probs=32.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+|+|||||++||++|..|.++|++|+|+|+...
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            6899999999999999999999999999999754

>PRK07121 hypothetical protein; Validated

Probab=99.07  E-value=2.5e-09  Score=99.20  Aligned_cols=38  Identities=26%  Similarity=0.479  Sum_probs=34.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+|.+||++|++++++|.+|+||||... .||
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~-~gG   57 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG-AGG   57 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC-CCC
Confidence            38999999999999999999999999999999853 454

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.07  E-value=1.3e-09  Score=93.53  Aligned_cols=36  Identities=33%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ....||+|||||+-|+++|++|+++|.++.++|+-+
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~   40 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP   40 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence            345899999999999999999999999999999964

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.07  E-value=1.3e-09  Score=99.66  Aligned_cols=42  Identities=31%  Similarity=0.377  Sum_probs=36.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.....||.+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~   44 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI   44 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence            489999999999999999999999999999987434677653

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.06  E-value=1.2e-09  Score=100.10  Aligned_cols=41  Identities=24%  Similarity=0.368  Sum_probs=36.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      ++||+|||||++|+++|+.++++|++|+|+|+.  ..||.+..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~--~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP--RVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC--ccCceeec
Confidence            389999999999999999999999999999985  37887643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.06  E-value=3e-09  Score=99.99  Aligned_cols=41  Identities=37%  Similarity=0.655  Sum_probs=35.3

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC-CCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH-GLGGR  129 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~-~~gg~  129 (253)
                      .++||+|||+|.+||++|+.+++.|.+|+||||... ..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~   44 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ   44 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence            348999999999999999999999999999999862 24553

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.06  E-value=1.5e-09  Score=101.03  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|.+||++|+.+++ |.+|+|+||...
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~   36 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK   36 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence            4799999999999999999976 899999999853

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.06  E-value=6.2e-10  Score=105.10  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=31.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      ++||+|||||++||+||+.+++.  |.+|+|+||..
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~   38 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH   38 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence            47999999999999999999987  48999999975

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.05  E-value=5.1e-09  Score=97.25  Aligned_cols=56  Identities=23%  Similarity=0.280  Sum_probs=44.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCCCCCCCCccccccCCCccccccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ  147 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~  147 (253)
                      .+|+|||||++||++|+.|.+.    |.+|+|||+.. ..||++.+......++.++.|..
T Consensus        23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~-~~GG~~~~~~~~~~Gy~~~~G~~   82 (576)
T PRK13977         23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD-VPGGSLDGAGNPEKGYVARGGRE   82 (576)
T ss_pred             CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC-CCCCCccCcccccCCEEEECCCC
Confidence            6899999999999999999995    68999999986 58998876443334555555543

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.04  E-value=2.6e-09  Score=100.69  Aligned_cols=34  Identities=32%  Similarity=0.488  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||+|.+||++|+.+++.|.+|+|+||..
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~   38 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVF   38 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            3899999999999999999999999999999974

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.04  E-value=1.2e-09  Score=102.52  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=32.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+|.+||+||+.+ +.|.+|+|+||.....||
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG   44 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSG   44 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCc
Confidence            37999999999999999999 999999999997532343

>PRK06370 mercuric reductase; Validated

Probab=99.04  E-value=2.4e-09  Score=98.65  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=37.4

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      +.++||+|||||++|+++|+.|++.|++|+|+|+..  .||.+..
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~--~GG~c~~   45 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL--LGGTCVN   45 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc--cCCceec
Confidence            445999999999999999999999999999999863  6776543

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.03  E-value=1.1e-09  Score=100.82  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=36.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+.+|+.|++.|++|+|+|++. ..||.+.
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~-~~GG~~~   45 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR-NVGGGCT   45 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc-ccccccc
Confidence            4899999999999999999999999999999964 4788653

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.03  E-value=4.9e-09  Score=96.45  Aligned_cols=39  Identities=31%  Similarity=0.546  Sum_probs=35.3

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG  127 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g  127 (253)
                      ..+||+|||||++|+.+|+.++.+|++|+|+|+++...|
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsG   49 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG   49 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCc
Confidence            458999999999999999999999999999999865444

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.03  E-value=3.4e-09  Score=97.81  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=36.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+.+|..|++.|++|+|+|+.+ ..||.+-
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~~GG~c~   44 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS-TLGGVCL   44 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-ccccccc
Confidence            4899999999999999999999999999999864 4777653

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.02  E-value=5.6e-09  Score=98.73  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=31.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC---CeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG---VKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g---~~v~~~e~~~  123 (253)
                      ++||+|||+|++||++|+.+++.|   .+|+|+||..
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~   41 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ   41 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence            379999999999999999999998   8999999975

>PRK06116 glutathione reductase; Validated

Probab=99.02  E-value=2.6e-09  Score=98.02  Aligned_cols=40  Identities=33%  Similarity=0.484  Sum_probs=36.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.  ..||.+.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~--~~GG~c~   43 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK--RLGGTCV   43 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc--chhhhhh
Confidence            489999999999999999999999999999986  3787653

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.02  E-value=2e-09  Score=102.47  Aligned_cols=34  Identities=32%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||+|++||++|+.+++.|.+|+|+||..
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~   41 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL   41 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            3799999999999999999999999999999975

>PRK14694 putative mercuric reductase; Provisional

Probab=99.01  E-value=4e-09  Score=97.32  Aligned_cols=41  Identities=32%  Similarity=0.643  Sum_probs=36.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      .+||+|||||++|+++|..|++.|++|+|+|++  ..||.|..
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~--~~GGtc~n   46 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG--TIGGTCVN   46 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc--ccccceec
Confidence            489999999999999999999999999999986  37887743

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.99  E-value=2.8e-09  Score=97.46  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=36.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      .+||+|||||++|+++|..|++.|++|+|+|+.....||.+
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c   43 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC   43 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence            48999999999999999999999999999999743357754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.99  E-value=4.4e-09  Score=100.39  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||+|.+||++|+.+++.|.+|+|+||..
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~   68 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD   68 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence            3799999999999999999999999999999853

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.99  E-value=4.3e-09  Score=96.10  Aligned_cols=30  Identities=30%  Similarity=0.684  Sum_probs=28.3

Q ss_pred             EECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           95 IIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        95 iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      |||+|++|+++|+.++++|.+|+||||...
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            799999999999999999999999999753

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.99  E-value=5.9e-09  Score=98.87  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||+|++||++|+.+++.|.+|+|+||..
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~   45 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF   45 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence            4899999999999999999999999999999974

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.98  E-value=9.7e-09  Score=97.27  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||+|.+||++|+.+++.|.+|+||||..
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~   45 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF   45 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            3899999999999999999999999999999974

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.98  E-value=5.2e-09  Score=96.08  Aligned_cols=41  Identities=29%  Similarity=0.460  Sum_probs=36.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      ++||+|||||++|+.+|+.|++.|++|+|+|+.  ..||.+-.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~--~~GG~c~~   42 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK--KLGGTCVN   42 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc--ccccceec
Confidence            489999999999999999999999999999986  37887643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.97  E-value=3.5e-09  Score=101.29  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=32.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~   39 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA   39 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            38999999999999999999999999999999753

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.97  E-value=6.5e-09  Score=95.69  Aligned_cols=41  Identities=27%  Similarity=0.466  Sum_probs=36.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      .+||+|||||++|+++|..|+++|++|+|+|+..  .||.+..
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~--~GG~c~~   44 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK--LGGTCLN   44 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc--cccceee
Confidence            3899999999999999999999999999999873  7887643

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.97  E-value=4.3e-09  Score=99.61  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~   41 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP   41 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            37999999999999999999999999999999853

>PRK08275 putative oxidoreductase; Provisional

Probab=98.96  E-value=6.5e-09  Score=97.83  Aligned_cols=34  Identities=26%  Similarity=0.531  Sum_probs=31.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~  124 (253)
                      +||+|||+|.+||+||+.+++.  |.+|+|+||...
T Consensus        10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275         10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            7999999999999999999987  789999999864

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.95  E-value=5.4e-09  Score=98.20  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|.+||+||+.++ .|.+|+|+||...
T Consensus         9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~   42 (553)
T PRK07395          9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL   42 (553)
T ss_pred             cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence            489999999999999999996 4999999999853

>PLN02976 amine oxidase

Probab=98.95  E-value=1.2e-08  Score=102.35  Aligned_cols=43  Identities=33%  Similarity=0.585  Sum_probs=38.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      ..||+|||||++|+++|+.|.+.|++|+|||++. .+||++.+.
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~-~vGGri~t~  735 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS-RIGGRVYTD  735 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc-CCCCceeec
Confidence            4789999999999999999999999999999985 588887654

>PLN02815 L-aspartate oxidase

Probab=98.95  E-value=9.7e-09  Score=97.10  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=31.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|.+||++|+.+++.| +|+|+||...
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~   62 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP   62 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence            489999999999999999999999 9999999753

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.95  E-value=7.8e-09  Score=98.51  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||+|++||++|+.+++.|.+|+|+||..
T Consensus        51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~   83 (635)
T PLN00128         51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF   83 (635)
T ss_pred             cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            799999999999999999999999999999975

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.94  E-value=6.2e-09  Score=95.98  Aligned_cols=42  Identities=31%  Similarity=0.459  Sum_probs=36.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      .+||+|||||++|+.+|..++++|++|+|+|+.. ..||.+..
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~-~~GG~c~~   44 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS-TLGGTCLN   44 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-ceeeeecc
Confidence            3899999999999999999999999999999753 37887644

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.94  E-value=9.2e-09  Score=97.84  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~   63 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP   63 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence            38999999999999999999999999999999753

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.94  E-value=7.4e-09  Score=98.04  Aligned_cols=35  Identities=29%  Similarity=0.515  Sum_probs=32.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ..||+|||+|++||++|+.+++.|.+|+|+||...
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~   37 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV   37 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            46999999999999999999999999999999753

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.94  E-value=3.2e-09  Score=97.84  Aligned_cols=41  Identities=24%  Similarity=0.376  Sum_probs=36.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      .+||+|||||++|+++|..|++.|++|+|+|++  ..||.+..
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~--~~GG~c~~   44 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK--YWGGVCLN   44 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCceec
Confidence            489999999999999999999999999999986  37776643

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.94  E-value=1.2e-08  Score=93.85  Aligned_cols=40  Identities=30%  Similarity=0.465  Sum_probs=36.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      +||+|||||++|+.+|+.|++.|++|+|+|+.  ..||.+..
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~--~~GG~~~~   41 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE--YLGGTCLN   41 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCceee
Confidence            79999999999999999999999999999983  37887643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.93  E-value=7.6e-09  Score=92.79  Aligned_cols=62  Identities=31%  Similarity=0.429  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483          100 MAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus       100 ~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++||+||+.|+++|++|+|||+.. .+||++.+...+..++.+|.|.+.+......+..++.+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~-r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~   62 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASD-RVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDE   62 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSS-SSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCC-CCCcceEEecCCccceeecCCcccccccchhhHHHHHH
Confidence            689999999999999999999986 69999988776544578899999887554444444443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.92  E-value=1.2e-08  Score=94.40  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      .+|++|||||++|+++|+.+++.|.+|+|+|+
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            48999999999999999999999999999998

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.92  E-value=5.7e-09  Score=84.87  Aligned_cols=32  Identities=44%  Similarity=0.694  Sum_probs=30.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ||+|||||++|+++|..|++.+.+|+|+|+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999999999999998864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.91  E-value=1.5e-08  Score=93.79  Aligned_cols=53  Identities=15%  Similarity=0.100  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCC-eEEEEeCccceeecCEEEEcCC
Q 047483          200 GMRPLADSLLAQTS--MVSIVRPCWISNLQPFNG-MWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       200 ~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ++..+|++|+....  |+.|..|++|++|.-..+ .|-|.+. -+.+++..||.|+|
T Consensus       185 DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~-~G~iet~~~VNaaG  240 (856)
T KOG2844|consen  185 DPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETP-HGSIETECVVNAAG  240 (856)
T ss_pred             CHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceecc-CcceecceEEechh
Confidence            46778888776543  799999999999976544 4556544 47899999999998

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.91  E-value=1.2e-08  Score=70.99  Aligned_cols=32  Identities=31%  Similarity=0.576  Sum_probs=30.3

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence            48999999999999999999999999999975

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.90  E-value=7.3e-09  Score=96.59  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|++||++|+.++  |.+|+|+||...
T Consensus         9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            489999999999999999997  579999999853

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.90  E-value=8.3e-09  Score=97.62  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||+|++||++|+.+++. .+|+|+||..
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~   37 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY   37 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence            48999999999999999999987 9999999975

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.89  E-value=2.9e-08  Score=93.91  Aligned_cols=39  Identities=33%  Similarity=0.543  Sum_probs=34.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ++||+|||+|++|+++|+.++++|++|+||||... .||.
T Consensus        12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~-~gg~   50 (581)
T PRK06134         12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPV-FGGT   50 (581)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC-CCcc
Confidence            48999999999999999999999999999999753 5553

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.88  E-value=3.4e-09  Score=93.77  Aligned_cols=140  Identities=13%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccc-cccCCCccccccccceeccCch----hHHHHHHhhh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFTVNDS----RFHELVDGWL  164 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  164 (253)
                      +|+++||.||++|++|..|.+.+ .++..||+.+.   -.|.. ...+...+....-..+....++    .+...+.+  
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~---f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~--   77 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS---FSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHE--   77 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHH--
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC---CCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHH--
Confidence            79999999999999999999986 99999998753   11211 1112111111111222221111    11222221  


Q ss_pred             hccccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCC----eEEEEe---
Q 047483          165 ERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG----MWHLSE---  237 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~----~~~v~~---  237 (253)
                       .+....|..       .+         ..+.......++++..+++++ -.++++++|++|+..++    .|.|.+   
T Consensus        78 -~~rl~~f~~-------~~---------~~~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~  139 (341)
T PF13434_consen   78 -HGRLYEFYN-------RG---------YFFPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPDDDGDEDLFRVTTRDS  139 (341)
T ss_dssp             -TT-HHHHHH-------H-----------SS-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEEEETTEEEEEEEEEET
T ss_pred             -cCChhhhhh-------cC---------CCCCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEecCCCccEEEEEEeec
Confidence             111111100       00         011122235788888888886 45899999999987654    488876   


Q ss_pred             -CccceeecCEEEEcCC
Q 047483          238 -NVKLRGQFDVVVIAHN  253 (253)
Q Consensus       238 -~~~~~~~ad~VV~AtG  253 (253)
                       .++..+.|+.||+|+|
T Consensus       140 ~g~~~~~~ar~vVla~G  156 (341)
T PF13434_consen  140 DGDGETYRARNVVLATG  156 (341)
T ss_dssp             TS-EEEEEESEEEE---
T ss_pred             CCCeeEEEeCeEEECcC
Confidence             2457899999999998

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.88  E-value=3e-08  Score=92.94  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=31.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++|+.+|+.+++.|.+|+|+|++.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            589999999999999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.88  E-value=2.6e-08  Score=92.90  Aligned_cols=37  Identities=24%  Similarity=0.552  Sum_probs=33.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+| +||++|+++++.|.+|+||||... .||
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~-~Gg   43 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK-FGG   43 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC-CCc
Confidence            4899999999 999999999999999999999753 444

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.88  E-value=4.8e-08  Score=92.37  Aligned_cols=38  Identities=32%  Similarity=0.552  Sum_probs=34.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+|++|+++|+.++++|.+|+|+||... .||
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~-~gG   46 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV-FGG   46 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC-CCC
Confidence            48999999999999999999999999999999853 454

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.87  E-value=8.9e-09  Score=101.86  Aligned_cols=40  Identities=35%  Similarity=0.627  Sum_probs=36.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+|+|||||++||++|+.|+++|++|+|||+.. ..||.+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~-~~GG~l  345 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH-DLGGVL  345 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC-CCCceE
Confidence            5799999999999999999999999999999974 477754

>PRK12839 hypothetical protein; Provisional

Probab=98.87  E-value=4.6e-08  Score=92.29  Aligned_cols=40  Identities=28%  Similarity=0.459  Sum_probs=35.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      .++||+|||+|.+|+++|+.|+++|.+|+||||+. ..||.
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~-~~gg~   46 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAS-TCGGA   46 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-CCCcc
Confidence            45899999999999999999999999999999975 35554

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.86  E-value=2.8e-08  Score=93.21  Aligned_cols=34  Identities=38%  Similarity=0.515  Sum_probs=31.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|++||++|+.+++. .+|+|+||...
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~   41 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL   41 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence            48999999999999999999987 89999999853

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.86  E-value=6.1e-08  Score=87.17  Aligned_cols=53  Identities=9%  Similarity=0.130  Sum_probs=39.7

Q ss_pred             hHHHHHHHHhh---cCCcEEEcCeEEEEEEEeCCe-EEEEe-----CccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQ---TSMVSIVRPCWISNLQPFNGM-WHLSE-----NVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~-~~v~~-----~~~~~~~ad~VV~AtG  253 (253)
                      +..+.+.|.+.   .++++++++++|++|++.+++ |.|..     .+...++|+.|++..|
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAG  241 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAG  241 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence            44555554442   347999999999999998666 98863     2446899999999876

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.85  E-value=2.9e-08  Score=94.26  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=29.7

Q ss_pred             EEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      |+|||+|++||++|+.+++.|.+|+|+||..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            6899999999999999999999999999975

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=5.1e-09  Score=94.96  Aligned_cols=69  Identities=26%  Similarity=0.413  Sum_probs=55.8

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +|+|+|||++||+||+.|+++|++|+|+|+++ ..||..++... ..+...++|.+.|......+..++.+
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~-~~GGk~~s~~~-~dg~~~E~glh~f~~~Y~n~~~ll~~   70 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARD-RLGGKVASWRD-SDGNHVEHGLHVFFGCYYNLLTLLKE   70 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccC-ccCceeeeeec-CCCCeeeeeeEEechhHHHHHHHhhh
Confidence            79999999999999999999999999999996 59998876544 34567788888887665555555544

>PTZ00058 glutathione reductase; Provisional

Probab=98.84  E-value=4.3e-08  Score=92.08  Aligned_cols=42  Identities=26%  Similarity=0.362  Sum_probs=37.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      ++||+|||||++|+.+|+.+++.|.+|+|+|++  ..||.+-+.
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~--~~GGtCln~   89 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD--YLGGTCVNV   89 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc--ccccccccc
Confidence            389999999999999999999999999999986  378876543

>PRK13748 putative mercuric reductase; Provisional

Probab=98.83  E-value=2.7e-08  Score=93.77  Aligned_cols=41  Identities=34%  Similarity=0.583  Sum_probs=37.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      .+||+|||||++|+.+|..|++.|++|+|+|++  ..||.+-.
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~--~~GG~c~n  138 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG--TIGGTCVN  138 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC--cceeeccc
Confidence            489999999999999999999999999999986  37887644

>PLN02546 glutathione reductase

Probab=98.83  E-value=1.1e-07  Score=89.33  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=30.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      ++||+|||+|++|..+|..+++.|.+|+|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            48999999999999999999999999999996

>PRK14727 putative mercuric reductase; Provisional

Probab=98.83  E-value=4.5e-08  Score=90.62  Aligned_cols=42  Identities=31%  Similarity=0.542  Sum_probs=37.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      ++||+|||+|++|+.+|+.|++.|.+|+|+|++. ..||.|-.
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~-~~GG~c~n   57 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD-VIGGCCVN   57 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-cceeEecc
Confidence            3899999999999999999999999999999874 47887754

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.83  E-value=5.5e-08  Score=98.58  Aligned_cols=40  Identities=28%  Similarity=0.558  Sum_probs=35.3

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      .++||+|||+|.+|+++|+.+++.|.+|+|+||... .||.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~-~GG~  447 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK-LGGN  447 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC-CCCc
Confidence            348999999999999999999999999999999853 5553

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.83  E-value=2.3e-08  Score=91.54  Aligned_cols=32  Identities=28%  Similarity=0.518  Sum_probs=29.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      +|+|||||++|+++|..|++.+  .+|+|||+.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~   35 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD   35 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence            6999999999999999999875  5999999975

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.83  E-value=7.7e-09  Score=95.93  Aligned_cols=57  Identities=35%  Similarity=0.489  Sum_probs=48.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceec
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT  150 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      .||+|||||++||++|..|+++|++|+|||++. ..||+..+...  .++.+|.|.+++.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~-~~GG~~~t~~~--~G~~fD~G~~~~~   58 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA-QPGGCAGTFRR--RGFTFDVGATQVA   58 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC-CCCCccceecc--CCEEEeecceEEE
Confidence            689999999999999999999999999999985 59998877654  3567777776664

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.82  E-value=3.5e-08  Score=87.12  Aligned_cols=146  Identities=21%  Similarity=0.237  Sum_probs=81.4

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHc------CCeEEEEcCCCCCCCCCcccc-ccCCCccccccccceeccCchhHHHHH
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKR------GVKSTVFDTGNHGLGGRMGTR-MIGPQPLIFDHAAQFFTVNDSRFHELV  160 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~------g~~v~~~e~~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ..++||+|||||++||++|++|.+.      .++|+|+||+. .+||..-.- .++                ...+.+++
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa-~~GghtlSGavie----------------p~aldEL~  136 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAA-EVGGHTLSGAVIE----------------PGALDELL  136 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecc-ccCCceecceeec----------------cchhhhhC
Confidence            3558999999999999999999773      58999999986 477755321 121                11223444


Q ss_pred             Hhhhhcccccc--cc-ccccceeeCCeeeeCCCCC-----CccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeC
Q 047483          161 DGWLERGLVRP--WE-GVIGELEVGGQFTPFPSSP-----PKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFN  230 (253)
Q Consensus       161 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~  230 (253)
                      .+|.+.+....  .. +.+..+...+ ..+.+-..     ..|+  ..+.++++.|.++..  |++|.-+..+.++-.++
T Consensus       137 P~wke~~apl~t~vT~d~~~fLt~~~-~i~vPv~~pm~NhGNYv--v~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~e  213 (621)
T KOG2415|consen  137 PDWKEDGAPLNTPVTSDKFKFLTGKG-RISVPVPSPMDNHGNYV--VSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDE  213 (621)
T ss_pred             cchhhcCCcccccccccceeeeccCc-eeecCCCcccccCCcEE--EEHHHHHHHHHHHHHhhCceeccccchhheeEcC
Confidence            44432221110  00 1111111111 11111111     1222  247788888877655  78888887777776553


Q ss_pred             Ce-EE-EE---------------eCccceeecCEEEEcCC
Q 047483          231 GM-WH-LS---------------ENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       231 ~~-~~-v~---------------~~~~~~~~ad~VV~AtG  253 (253)
                      ++ +. |.               ++.|-.+.|+.-|.|-|
T Consensus       214 dgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG  253 (621)
T KOG2415|consen  214 DGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG  253 (621)
T ss_pred             CCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence            32 22 11               22344678888888765

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.82  E-value=3.9e-08  Score=98.26  Aligned_cols=40  Identities=33%  Similarity=0.537  Sum_probs=35.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      .+||+|||||++||++|+.|++.|++|+|+|++. ..||.+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~-~~GG~~  202 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQP-EAGGSL  202 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-CCCCee
Confidence            4799999999999999999999999999999975 366654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02507 glutathione reductase

Probab=98.82  E-value=4.1e-08  Score=91.29  Aligned_cols=32  Identities=25%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      .+||+|||||++|+.+|..+++.|.+|+|+|+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            48999999999999999999999999999997

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.81  E-value=1.1e-08  Score=99.73  Aligned_cols=32  Identities=34%  Similarity=0.438  Sum_probs=30.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      +|+|||||++||++|+.|++.  |++|+|+|++.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~   35 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR   35 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence            799999999999999999998  89999999975

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.80  E-value=7.3e-08  Score=90.76  Aligned_cols=39  Identities=23%  Similarity=0.532  Sum_probs=34.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ++||+|||+|.+|+++|+.|+++|.+|+||||... .||.
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~-~gG~   44 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK-VGGS   44 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC-CCce
Confidence            48999999999999999999999999999999753 5554

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.80  E-value=1.1e-07  Score=90.06  Aligned_cols=38  Identities=32%  Similarity=0.658  Sum_probs=34.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+|++||++|+.++++|.+|+||||... .||
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~-~gG   48 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH-FGG   48 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC-CCc
Confidence            48999999999999999999999999999999853 454

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.79  E-value=4.6e-08  Score=92.74  Aligned_cols=32  Identities=34%  Similarity=0.634  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHh----HcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLD----KRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~----~~g~~v~~~e~~~  123 (253)
                      ||+|||+|++||+||+.++    +.|.+|+|+||..
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~   36 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN   36 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence            7999999999999999998    6799999999975

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.78  E-value=7.8e-08  Score=90.97  Aligned_cols=40  Identities=30%  Similarity=0.458  Sum_probs=35.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ++||+|||+|.+|+++|+.++++|++|+||||.. ..||..
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~-~~gg~~   55 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTE-YVGGTT   55 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-CCCCcc
Confidence            4899999999999999999999999999999975 356543

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.78  E-value=1.5e-08  Score=93.01  Aligned_cols=70  Identities=24%  Similarity=0.411  Sum_probs=55.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||||++||++|+.|.++|++|+|||+.+ ..||+..+... ..+..+|.|.+++....+.+.++++++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~-~~GG~~~s~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l   70 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD-VLGGKVAAWKD-EDGDWYETGLHIFFGAYPNMLQLLKEL   70 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCCCcceeEC-CCCCEEEcCcceeccCCchHHHHHHHc
Confidence            58999999999999999999999999999985 58998865421 134567888887776666666666553

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.77  E-value=1e-07  Score=89.81  Aligned_cols=39  Identities=23%  Similarity=0.497  Sum_probs=34.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ++||+|||+| +|+++|+.+++.|.+|+|+||.. ..||..
T Consensus        16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~-~~GG~~   54 (564)
T PRK12845         16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS-YVGGST   54 (564)
T ss_pred             eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCC-CCcCcc
Confidence            4899999999 89999999999999999999975 366643

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.77  E-value=9.4e-08  Score=88.18  Aligned_cols=40  Identities=35%  Similarity=0.535  Sum_probs=35.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      .||+|||+|++|+.+|..|+++|.+|+|+|++.  .||.+-.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~--~gG~c~~   41 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG--LGGAAVL   41 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC--CCCcccc
Confidence            489999999999999999999999999999863  6776643

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.77  E-value=3.2e-08  Score=90.89  Aligned_cols=51  Identities=6%  Similarity=-0.018  Sum_probs=34.0

Q ss_pred             hHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE--EEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW--HLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~--~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +.+++...+.+. |++++.++ |+++..+++++  .|..+++.+++||.||-|||
T Consensus       156 fd~~L~~~A~~~-Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG  208 (454)
T PF04820_consen  156 FDQFLRRHAEER-GVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASG  208 (454)
T ss_dssp             HHHHHHHHHHHT-T-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SG
T ss_pred             HHHHHHHHHhcC-CCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCC
Confidence            344444444443 79998884 88887776654  46677888999999999998

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.76  E-value=4.4e-08  Score=88.27  Aligned_cols=33  Identities=36%  Similarity=0.627  Sum_probs=31.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            589999999999999999999999999999865

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.75  E-value=3.9e-08  Score=88.82  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|+|||||++|+++|..|++.|.  +|+|+++..
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            589999999999999999999875  899999864

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.75  E-value=4.6e-08  Score=83.84  Aligned_cols=37  Identities=30%  Similarity=0.615  Sum_probs=32.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      .|+|||+|++||+++..+...|-.|+++|++. ..||.
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~-s~GGN   47 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAG-SIGGN   47 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccC-CcCCc
Confidence            59999999999999999999988899999985 36653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.75  E-value=9.5e-08  Score=85.71  Aligned_cols=96  Identities=19%  Similarity=0.241  Sum_probs=70.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||||+.|+.+|..|.+.|.+|+++|+.+. ...+                  .                     
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~-~l~~------------------~---------------------  180 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS-LLAS------------------L---------------------  180 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc-ccch------------------h---------------------
Confidence            35899999999999999999999999999998642 1000                  0                     


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                            .+.     .+...+...+++. +++++++++|.+++.+++.+.+.+.++..+.+|.||
T Consensus       181 ----------------------~~~-----~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI  232 (377)
T PRK04965        181 ----------------------MPP-----EVSSRLQHRLTEM-GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVI  232 (377)
T ss_pred             ----------------------CCH-----HHHHHHHHHHHhC-CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEE
Confidence                                  000     0112222222332 699999999999988777787877787899999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       233 ~a~G  236 (377)
T PRK04965        233 AAAG  236 (377)
T ss_pred             ECcC
Confidence            9987

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.75  E-value=4.4e-08  Score=96.47  Aligned_cols=41  Identities=41%  Similarity=0.618  Sum_probs=36.0

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ...+|+|||||++|+++|+.|+++|++|+|||+.. ..||.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~-~~GG~l  578 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE-NAGGVV  578 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-ccCcce
Confidence            34799999999999999999999999999999975 366654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.74  E-value=7.3e-08  Score=88.68  Aligned_cols=40  Identities=35%  Similarity=0.453  Sum_probs=35.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|..|++.|++|+|+|++  ..||.+.
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~GG~~~   42 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG--PLGGTCL   42 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC--cccccee
Confidence            389999999999999999999999999999994  3777654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.74  E-value=2.3e-07  Score=87.46  Aligned_cols=38  Identities=34%  Similarity=0.688  Sum_probs=34.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+|++|+++|+.++++|.+|+||||... .||
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~-~gG   44 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH-YGG   44 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC-CCc
Confidence            48999999999999999999999999999999753 454

>TIGR02053 MerA mercuric reductase

Probab=98.73  E-value=2.6e-08  Score=91.74  Aligned_cols=40  Identities=30%  Similarity=0.475  Sum_probs=35.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      +||+|||||++|+++|..|++.|++|+|+|+..  .||.+..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~--~GG~c~n   40 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP--LGGTCVN   40 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc--ccCCeee
Confidence            599999999999999999999999999999863  7877643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.73  E-value=1.2e-07  Score=86.75  Aligned_cols=32  Identities=16%  Similarity=0.414  Sum_probs=29.6

Q ss_pred             cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      +|+|||||++|+.+|..|++.  +.+|+|+|+.+
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~   36 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR   36 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            799999999999999999886  68999999975

>PRK12831 putative oxidoreductase; Provisional

Probab=98.73  E-value=4e-08  Score=90.53  Aligned_cols=41  Identities=39%  Similarity=0.649  Sum_probs=35.9

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ...||+|||||++||++|+.|+++|++|+|||+.. ..||.+
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~-~~GG~l  179 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH-EPGGVL  179 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC-CCCCee
Confidence            45799999999999999999999999999999874 366654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.72  E-value=2.2e-07  Score=86.11  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~  122 (253)
                      ++||+|||+|++|..+|+.+++. |.+|+|+|++
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            48999999999999999999997 9999999974

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.71  E-value=4.7e-08  Score=83.68  Aligned_cols=71  Identities=18%  Similarity=0.339  Sum_probs=57.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCcccc-ccccceeccCchhHHHHHHh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF-DHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +|++|||+|++|+.+|..|++.|.+|.|+||+++ +||.+....-+..++.+ ..|+++|..++..+-+.+..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H-IGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~   73 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH-IGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQ   73 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc-CCCccccccCCCCCeEEeeccCceeecCchHHHHHHhh
Confidence            6999999999999999999999999999999974 99988766555456544 46888888777766555554

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.71  E-value=2.8e-08  Score=91.83  Aligned_cols=69  Identities=22%  Similarity=0.410  Sum_probs=54.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +|+|||||++||++|+.|.++|++|+|+|++. ..||+.++... ..+..+|.|.+++....+.+.+++++
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~-~~GG~~~~~~~-~~g~~~d~G~~~~~~~~~~~~~~~~~   69 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRS-FIGGKVGSWVD-GDGNHIEMGLHVFFGCYANLFRLMKK   69 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC-CCCceeeeeec-CCCceEeeceEEecCchHHHHHHHHH
Confidence            58999999999999999999999999999985 58998776422 12567788888877655555555554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.70  E-value=1.3e-07  Score=86.44  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=70.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+.+|..+++.|.+|+|+|+.+. .                      +...++                
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~-i----------------------Lp~~D~----------------  214 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR-I----------------------LPGEDP----------------  214 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-C----------------------CCcCCH----------------
Confidence            5799999999999999999999999999999752 0                      000000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccc--eeecCEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKL--RGQFDVV  248 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~--~~~ad~V  248 (253)
                                                   .+.+++...+++ .+++++++++|+.++..++++.+..+++.  ++++|.|
T Consensus       215 -----------------------------ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~v  264 (454)
T COG1249         215 -----------------------------EISKELTKQLEK-GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAV  264 (454)
T ss_pred             -----------------------------HHHHHHHHHHHh-CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEE
Confidence                                         123333333334 46999999999999988776666655544  7899999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      ++|+|
T Consensus       265 LvAiG  269 (454)
T COG1249         265 LVAIG  269 (454)
T ss_pred             EEccC
Confidence            99998

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.70  E-value=2.3e-07  Score=85.38  Aligned_cols=40  Identities=33%  Similarity=0.585  Sum_probs=35.3

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      +|+|||||++|+++|..|++.|.+|+|+|++.  .||.+-+.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~--~GG~c~n~   41 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD--LGGTCLNE   41 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc--ccccCCCC
Confidence            79999999999999999999999999999873  67766443

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.70  E-value=4.4e-08  Score=88.30  Aligned_cols=153  Identities=20%  Similarity=0.231  Sum_probs=76.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--C-CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--G-VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g-~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ++|+|||+|++|+.+|.+|.+.  . ..|.|+|+... .|.......-.. .........-+....+...+-+.+|....
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~-~G~GiaYs~~~p-~~~lNv~a~~mS~~~pD~p~~F~~WL~~~   79 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN-FGQGIAYSTEEP-EHLLNVPAARMSAFAPDIPQDFVRWLQKQ   79 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc-cCCCccCCCCCc-hhhhccccccccccCCCCchHHHHHHHhc
Confidence            6899999999999999999985  1 23999999854 443222111100 00111111111111111111111121111


Q ss_pred             cccccccccc-ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCc-EEEcCeEEEEEEEe--CCeEEEEeCcccee
Q 047483          168 LVRPWEGVIG-ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMV-SIVRPCWISNLQPF--NGMWHLSENVKLRG  243 (253)
Q Consensus       168 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv-~i~~~t~V~~i~~~--~~~~~v~~~~~~~~  243 (253)
                      ....   ... .....+..++     ++.....-+.+.+..|.++.+.. -.+..++++++.+.  ..+|.+...++...
T Consensus        80 ~~~~---~d~~~~~~d~~~y~-----pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~  151 (474)
T COG4529          80 LQRY---RDPEDINHDGQAYP-----PRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSE  151 (474)
T ss_pred             cccc---CChhhcCCcccccc-----chhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCee
Confidence            0000   000 0001111111     22222223455566666654422 22346677777776  56777878888889


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      .||.+|+|||
T Consensus       152 ~ad~~Vlatg  161 (474)
T COG4529         152 IADIIVLATG  161 (474)
T ss_pred             eeeEEEEecc
Confidence            9999999997

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.70  E-value=1.3e-07  Score=86.27  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||||.+|+.+|..|.+.+++|+|+|+.+
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~   43 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN   43 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence            3689999999999999999987789999999864

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.70  E-value=6e-08  Score=90.88  Aligned_cols=36  Identities=31%  Similarity=0.502  Sum_probs=33.2

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .++||+|||||.+||.+|+.++++|.+|+|+||...
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~   40 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP   40 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            348999999999999999999999999999999753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.70  E-value=2e-07  Score=83.66  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=29.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      .+|+|||||++|+.+|..|.+.  ..+|+|+++..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~   37 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS   37 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            4899999999999999999885  46899999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.68  E-value=3.1e-07  Score=91.10  Aligned_cols=34  Identities=32%  Similarity=0.555  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||+|.+||++|+.+++.|.+|+|+||..
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~   46 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH   46 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            3899999999999999999999999999999975

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.67  E-value=2.5e-07  Score=83.53  Aligned_cols=95  Identities=24%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||+|..|+.+|..|++.|.+|+|+|+.+. ..++.                  +   .+               
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-~l~~~------------------~---~~---------------  186 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT-VMGRN------------------A---PP---------------  186 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc-chhhh------------------c---CH---------------
Confidence            35899999999999999999999999999998642 11000                  0   00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                    .....+...+++. ++++++++.|++++. ++.+.+.+.++..+.+|.||
T Consensus       187 ------------------------------~~~~~l~~~l~~~-GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv  234 (396)
T PRK09754        187 ------------------------------PVQRYLLQRHQQA-GVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVI  234 (396)
T ss_pred             ------------------------------HHHHHHHHHHHHC-CCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEE
Confidence                                          0122222222222 699999999999976 55566767777889999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       235 ~a~G  238 (396)
T PRK09754        235 YGIG  238 (396)
T ss_pred             ECCC
Confidence            9987

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.66  E-value=4.9e-08  Score=95.05  Aligned_cols=41  Identities=41%  Similarity=0.656  Sum_probs=35.6

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ...||+|||||++||++|+.|+++|++|+|||+.. ..||.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~-~~GG~l  470 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH-EIGGVL  470 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC-CCCCee
Confidence            34799999999999999999999999999999864 366653

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.66  E-value=6e-08  Score=86.74  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=48.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHH
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVD  161 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +||+|||||++|+++|+.|++.|.+|+|+|++. ..||.+.+.... .....+.|.+.+......+.+.+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~-~iGG~~~~~~~~-g~~~~~~G~h~f~t~~~~v~~~~~   70 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN-HIGGNCYDEVDE-TILFHQYGPHIFHTNNQYVWDYIS   70 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCCceeeecCC-CceEEeecceeEecCcHHHHHHHH
Confidence            699999999999999999999999999999975 488865543222 112235566666544444444333

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07846 mycothione reductase; Reviewed

Probab=98.66  E-value=2.2e-07  Score=85.45  Aligned_cols=93  Identities=17%  Similarity=0.140  Sum_probs=69.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+. ..        .              ..++                
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-ll--------~--------------~~d~----------------  207 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR-LL--------R--------------HLDD----------------  207 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-cc--------c--------------ccCH----------------
Confidence            5899999999999999999999999999998642 10        0              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+..+.+.  +++++++++|++++.+++++.+...++..+.+|.||+
T Consensus       208 -----------------------------~~~~~l~~l~~~--~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~  256 (451)
T PRK07846        208 -----------------------------DISERFTELASK--RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLV  256 (451)
T ss_pred             -----------------------------HHHHHHHHHHhc--CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEE
Confidence                                         012222333332  5999999999999877667777666677899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       257 a~G  259 (451)
T PRK07846        257 ATG  259 (451)
T ss_pred             EEC
Confidence            987

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.65  E-value=1e-07  Score=94.13  Aligned_cols=40  Identities=35%  Similarity=0.563  Sum_probs=35.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+|+|||||++||++|+.|++.|++|+|||+.. ..||..
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~-~lGG~l  576 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE-KPGGVV  576 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-ccCcee
Confidence            4799999999999999999999999999999975 367654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.64  E-value=2.5e-07  Score=85.20  Aligned_cols=94  Identities=17%  Similarity=0.206  Sum_probs=68.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|++.|.+|+++|+.+. .        .+              ..++                
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~--------l~--------------~~~~----------------  213 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR-I--------LP--------------GEDK----------------  213 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-c--------CC--------------cCCH----------------
Confidence            5899999999999999999999999999998642 1        00              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc---ceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK---LRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~---~~~~ad~  247 (253)
                                                   .+...+...+++. +++++++++|++|+.+++.+.+...++   ..+.+|.
T Consensus       214 -----------------------------~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~  263 (462)
T PRK06416        214 -----------------------------EISKLAERALKKR-GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADY  263 (462)
T ss_pred             -----------------------------HHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCE
Confidence                                         0122222222222 699999999999988777777665444   5799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       264 vi~a~G  269 (462)
T PRK06416        264 VLVAVG  269 (462)
T ss_pred             EEEeeC
Confidence            999987

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.64  E-value=1.2e-07  Score=87.58  Aligned_cols=39  Identities=28%  Similarity=0.337  Sum_probs=34.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhH--cCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDK--RGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~--~g~~v~~~e~~~~~~gg~~  130 (253)
                      .+|+|||||++|+.+|+.|++  .|++|+|||+.+ .+||.+
T Consensus        27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p-~pgGlv   67 (491)
T PLN02852         27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP-TPFGLV   67 (491)
T ss_pred             CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC-CCcceE
Confidence            689999999999999999987  699999999986 466644

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.64  E-value=3.9e-07  Score=78.66  Aligned_cols=39  Identities=33%  Similarity=0.630  Sum_probs=34.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC-CCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH-GLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~-~~gg  128 (253)
                      ..||+|||+|++||.+|.+|+++|.+|+|+|+... ..||
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG   44 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG   44 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence            47999999999999999999999999999998533 3454

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.63  E-value=1.2e-07  Score=85.59  Aligned_cols=32  Identities=47%  Similarity=0.657  Sum_probs=30.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ||+|||+|++||++|+.|.+. ++|+|+-|+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence            899999999999999999998 99999999753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.62  E-value=3.6e-07  Score=84.10  Aligned_cols=94  Identities=20%  Similarity=0.178  Sum_probs=69.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+|+|+.+. ...                   .+   ++.               
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~-------------------~~---d~~---------------  217 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR-LLS-------------------FL---DDE---------------  217 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-cCC-------------------cC---CHH---------------
Confidence            6899999999999999999999999999998642 100                   00   000               


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                           .        ...+.+.+.+.  +++++++++|++++.+++++.++..++..+.+|.||+
T Consensus       218 ---------------------~--------~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~  266 (461)
T PRK05249        218 ---------------------I--------SDALSYHLRDS--GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLY  266 (461)
T ss_pred             ---------------------H--------HHHHHHHHHHc--CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEE
Confidence                                 0        01222333222  6999999999999877777777766667899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       267 a~G  269 (461)
T PRK05249        267 ANG  269 (461)
T ss_pred             eec
Confidence            987

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.62  E-value=1.5e-07  Score=80.54  Aligned_cols=34  Identities=32%  Similarity=0.568  Sum_probs=31.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      .+|++|||||+.||+.|.+|.-+  +.+|.|+|+..
T Consensus        48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~   83 (453)
T KOG2665|consen   48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEK   83 (453)
T ss_pred             cccEEEECCceeehhhhHHHhhcCCCceEEeeehhh
Confidence            48999999999999999999877  89999999964

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.62  E-value=5.1e-07  Score=84.01  Aligned_cols=32  Identities=34%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +||+|||||++|+.+|..|+++|.+|+|+|+.
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            89999999999999999999999999999973

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.62  E-value=3.1e-07  Score=84.47  Aligned_cols=93  Identities=19%  Similarity=0.171  Sum_probs=68.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||.+|+.+|..|.+.|.+|+++|+.+. ..        +           .+   +.                
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~l--------~-----------~~---~~----------------  211 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR-IL--------P-----------GE---DA----------------  211 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC-CC--------C-----------CC---CH----------------
Confidence            5899999999999999999999999999998742 10        0           00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc--ceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK--LRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~--~~~~ad~  247 (253)
                                                   .+.. +.+.+.+.  +++++++++|++|+.+++.+.+...++  ..+.+|.
T Consensus       212 -----------------------------~~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~  260 (461)
T TIGR01350       212 -----------------------------EVSKVVAKALKKK--GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEK  260 (461)
T ss_pred             -----------------------------HHHHHHHHHHHHc--CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCE
Confidence                                         0111 22223322  699999999999988777777765444  4799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       261 vi~a~G  266 (461)
T TIGR01350       261 VLVAVG  266 (461)
T ss_pred             EEEecC
Confidence            999997

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.61  E-value=1.2e-07  Score=86.59  Aligned_cols=44  Identities=30%  Similarity=0.483  Sum_probs=38.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      ..+|++|||+|++|..+|..+++.|.+|.|+|+.. ..||.+-..
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~-~lGGtCln~   46 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE-RLGGTCLNV   46 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC-CcCceEEee
Confidence            45999999999999999999999999999999974 478876543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.61  E-value=2.2e-07  Score=84.14  Aligned_cols=33  Identities=33%  Similarity=0.602  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||+|||||++|+.+|+.|+++|++|+|||+.+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp   33 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP   33 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            379999999999999999999999999999865

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.61  E-value=1.4e-07  Score=84.09  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHc---CCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKR---GVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~---g~~v~~~e~~~  123 (253)
                      +|+|||||++|+.+|..|.++   +.+|+|+|++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~   35 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS   35 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence            489999999999999999643   68999999874

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.61  E-value=9.7e-08  Score=95.28  Aligned_cols=40  Identities=43%  Similarity=0.552  Sum_probs=35.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+|+|||||++||++|+.|+++|++|+|||+.. ..||.+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~-~~GG~l  469 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH-VVGGVL  469 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCccee
Confidence            4799999999999999999999999999999875 466643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.60  E-value=9.9e-08  Score=87.61  Aligned_cols=41  Identities=44%  Similarity=0.683  Sum_probs=35.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ...+|+|||||++||++|+.|++.|++|+|||+.. ..||.+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~-~~GG~l  172 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALH-KPGGVV  172 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-CCCcEe
Confidence            34799999999999999999999999999999974 356543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.60  E-value=2.8e-07  Score=80.75  Aligned_cols=34  Identities=35%  Similarity=0.487  Sum_probs=32.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..||+|||||.+|.++|+.|++.|.+|.|+||+-
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            3799999999999999999999999999999963

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=1.3e-07  Score=86.28  Aligned_cols=145  Identities=17%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCch----hHHHHHHhhhh
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS----RFHELVDGWLE  165 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  165 (253)
                      .+||+|||||-+|+.+|++.++.|.++.++--+.+.+|-..=+..+.+.      +...+...-+    .+....+.   
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~------~KG~lvrEIDALGG~Mg~~~D~---   74 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGP------GKGHLVREIDALGGLMGKAADK---   74 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCc------ccceeEEeehhccchHHHhhhh---
Confidence            4899999999999999999999999999998765433321100001000      0001111111    11111111   


Q ss_pred             cccccc-ccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe--EEEEeCccce
Q 047483          166 RGLVRP-WEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM--WHLSENVKLR  242 (253)
Q Consensus       166 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~--~~v~~~~~~~  242 (253)
                      .++--+ +....++     .+.....+....    ..+..++..++..+++.|+.+ .|+++..+++.  +-|.+.+|..
T Consensus        75 ~~IQ~r~LN~sKGP-----AVra~RaQaDk~----~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~  144 (621)
T COG0445          75 AGIQFRMLNSSKGP-----AVRAPRAQADKW----LYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPE  144 (621)
T ss_pred             cCCchhhccCCCcc-----hhcchhhhhhHH----HHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCe
Confidence            000000 0000000     000000111111    124555666666667888744 67788765543  4466788889


Q ss_pred             eecCEEEEcCC
Q 047483          243 GQFDVVVIAHN  253 (253)
Q Consensus       243 ~~ad~VV~AtG  253 (253)
                      +.|+.||++||
T Consensus       145 ~~a~aVVlTTG  155 (621)
T COG0445         145 FHAKAVVLTTG  155 (621)
T ss_pred             eecCEEEEeec
Confidence            99999999998

>PRK06116 glutathione reductase; Validated

Probab=98.60  E-value=5.9e-07  Score=82.49  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=68.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|.+|+.+|..|.+.|.+|+++++++. .        ..           .+   ++.               
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~--------l~-----------~~---~~~---------------  209 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA-P--------LR-----------GF---DPD---------------  209 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-C--------cc-----------cc---CHH---------------
Confidence            5899999999999999999999999999998642 1        00           00   000               


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV  249 (253)
                                           .        ...+.+.|.+.  |++++++++|.+++.++++ +.+.++++..+.+|.||
T Consensus       210 ---------------------~--------~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv  258 (450)
T PRK06116        210 ---------------------I--------RETLVEEMEKK--GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLI  258 (450)
T ss_pred             ---------------------H--------HHHHHHHHHHC--CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEE
Confidence                                 0        02222333222  6999999999999876554 66776677789999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       259 ~a~G  262 (450)
T PRK06116        259 WAIG  262 (450)
T ss_pred             EeeC
Confidence            9987

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.59  E-value=1.9e-07  Score=83.05  Aligned_cols=38  Identities=42%  Similarity=0.485  Sum_probs=33.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      .+|+|||+|++|+.+|..|++.|++|+|+|+.+ ..||.
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~~gg~   56 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP-EPGGL   56 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-CCCce
Confidence            689999999999999999999999999999975 35553

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.59  E-value=1.7e-07  Score=86.17  Aligned_cols=39  Identities=36%  Similarity=0.656  Sum_probs=34.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ..+|+|||||++|+++|+.|+++|++|+|+|+.. ..||.
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~-~~gG~  178 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD-KAGGL  178 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC-CCCcE
Confidence            4799999999999999999999999999999975 35553

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.58  E-value=7.2e-07  Score=82.69  Aligned_cols=32  Identities=34%  Similarity=0.450  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +||+|||+|++|+.+|+.+++.|.+|+|+|+.
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            89999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.58  E-value=5.7e-07  Score=82.32  Aligned_cols=93  Identities=23%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+. ...+                      .++                
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~~~----------------  198 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST-ILPR----------------------EEP----------------  198 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc-cCCC----------------------CCH----------------
Confidence            5799999999999999999999999999998642 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++. |++++++++|++|+.+++.+.+.. ++..+.+|.||+
T Consensus       199 -----------------------------~~~~~~~~~l~~~-GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viv  247 (438)
T PRK07251        199 -----------------------------SVAALAKQYMEED-GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLY  247 (438)
T ss_pred             -----------------------------HHHHHHHHHHHHc-CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEE
Confidence                                         0122222222222 699999999999987666666654 456899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       248 a~G  250 (438)
T PRK07251        248 ATG  250 (438)
T ss_pred             eeC
Confidence            987

>PLN02487 zeta-carotene desaturase

Probab=98.56  E-value=1.4e-07  Score=88.59  Aligned_cols=70  Identities=21%  Similarity=0.381  Sum_probs=52.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      .+|+|||||++||++|+.|.++|++|+|+|+.. ..||++++.... .+..+|.|.+++....+.+..++++
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~-~~gG~~~s~~~~-~g~~~e~G~h~~~~~~~~~~~ll~~  145 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP-FIGGKVGSFVDK-NGNHIEMGLHVFFGCYNNLFRLMKK  145 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC-CCCCceeeeeec-CCcEEecceeEecCCcHHHHHHHHh
Confidence            589999999999999999999999999999986 488877654321 2456677777765444444444444

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.56  E-value=1.1e-06  Score=79.41  Aligned_cols=33  Identities=48%  Similarity=0.835  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||+|++|+++|+.|.++|++|+|+|++.
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            489999999999999999999999999999964

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.55  E-value=1.3e-06  Score=78.27  Aligned_cols=61  Identities=11%  Similarity=0.023  Sum_probs=48.4

Q ss_pred             CccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEEEcCC
Q 047483          193 PKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       193 ~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .++++...+..+++.+.+...  |++|+|+++|.+|+..++. ..+.++++..+.+|+||+|.|
T Consensus       164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G  227 (486)
T COG2509         164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG  227 (486)
T ss_pred             ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
Confidence            456666677777777766554  6999999999999988764 445577778999999999987

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.55  E-value=8.3e-08  Score=91.58  Aligned_cols=44  Identities=34%  Similarity=0.598  Sum_probs=37.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      ++||+|||+|++|..+|..+++.|.+|+|+|++....||.+-..
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~  159 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV  159 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence            48999999999999999999999999999997533478876543

>PLN02507 glutathione reductase

Probab=98.55  E-value=7.6e-07  Score=82.86  Aligned_cols=94  Identities=18%  Similarity=0.181  Sum_probs=69.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+|+++.+. .        ..           .+   ++                
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~-~--------l~-----------~~---d~----------------  244 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL-P--------LR-----------GF---DD----------------  244 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC-c--------Cc-----------cc---CH----------------
Confidence            5899999999999999999999999999998642 0        00           00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++. |+++++++.|++++.+++++.+...++..+.+|.||+
T Consensus       245 -----------------------------~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~  294 (499)
T PLN02507        245 -----------------------------EMRAVVARNLEGR-GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLF  294 (499)
T ss_pred             -----------------------------HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEE
Confidence                                         0122222222222 6999999999999877777777766667899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       295 a~G  297 (499)
T PLN02507        295 ATG  297 (499)
T ss_pred             eec
Confidence            987

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.55  E-value=3.9e-07  Score=89.46  Aligned_cols=38  Identities=5%  Similarity=0.042  Sum_probs=31.1

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++.++.|++|..+..  .|.+.++..+.+|+||+|||
T Consensus        73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATG  110 (847)
T PRK14989         73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATG  110 (847)
T ss_pred             CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCC
Confidence            699999999999987543  34456667899999999998

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.54  E-value=1.6e-07  Score=83.18  Aligned_cols=71  Identities=24%  Similarity=0.435  Sum_probs=57.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCCCCCCCCccccccCCCccccccccceeccCch---hHHHHHHhh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS---RFHELVDGW  163 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  163 (253)
                      .+|+|||||++||++||+|++++.  .|+|+|+.+ ..||.+.+ ....+++.|+.|++.+....+   ...++++++
T Consensus        12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~-RvGGwirS-~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL   87 (491)
T KOG1276|consen   12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP-RVGGWIRS-DRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL   87 (491)
T ss_pred             ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC-cccceeee-ccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence            689999999999999999999975  456699986 59998877 344568899999998886665   455666654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.54  E-value=7.7e-07  Score=82.15  Aligned_cols=94  Identities=13%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|..|+.+|..|++.|.+|+++|+.+. ....                      .++                
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~d~----------------  218 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR-VLPG----------------------EDA----------------  218 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-CCCC----------------------CCH----------------
Confidence            5799999999999999999999999999998642 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++. |++++++++|++++.+++++.+...++..+.+|.||+
T Consensus       219 -----------------------------~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~  268 (466)
T PRK07845        219 -----------------------------DAAEVLEEVFARR-GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALM  268 (466)
T ss_pred             -----------------------------HHHHHHHHHHHHC-CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEE
Confidence                                         0122222222322 6999999999999877777777666777899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       269 a~G  271 (466)
T PRK07845        269 AVG  271 (466)
T ss_pred             eec
Confidence            987

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.54  E-value=7.9e-07  Score=81.61  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=68.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|.+|+.+|..|++.|.+|+|+|+... .        ..           .+   ++                
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-~--------l~-----------~~---d~----------------  207 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL-I--------LR-----------GF---DD----------------  207 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC-C--------Cc-----------cc---CH----------------
Confidence            5799999999999999999999999999998642 1        00           00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++. +++++++++|++++..++++.+...++..+.+|.||+
T Consensus       208 -----------------------------~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viv  257 (446)
T TIGR01424       208 -----------------------------DMRALLARNMEGR-GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLF  257 (446)
T ss_pred             -----------------------------HHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEE
Confidence                                         0112222222222 6999999999999877666777666667899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       258 a~G  260 (446)
T TIGR01424       258 ATG  260 (446)
T ss_pred             eeC
Confidence            987

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.54  E-value=7.4e-07  Score=81.90  Aligned_cols=93  Identities=12%  Similarity=0.052  Sum_probs=66.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||.+|+.+|..|++.|.+|+|+|+.+. +...                      .++                
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~-il~~----------------------~d~----------------  207 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER-VLRS----------------------FDS----------------  207 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-CCcc----------------------cCH----------------
Confidence            5899999999999999999999999999998642 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCcc-ceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVK-LRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~-~~~~ad~  247 (253)
                                                   .+.. +.+.|.+.  |+++++++.|++++.++++ ..+..+++ ..+.+|.
T Consensus       208 -----------------------------~~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~  256 (450)
T TIGR01421       208 -----------------------------MISETITEEYEKE--GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDE  256 (450)
T ss_pred             -----------------------------HHHHHHHHHHHHc--CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCE
Confidence                                         0122 22233322  6999999999999876443 55655555 5699999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       257 vi~a~G  262 (450)
T TIGR01421       257 LIWAIG  262 (450)
T ss_pred             EEEeeC
Confidence            999987

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03452 mycothione_red mycothione reductase

Probab=98.54  E-value=8e-07  Score=81.72  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=68.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+.+|..|.+.|.+|+++|+.+. ...                   .+   ++                
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~-ll~-------------------~~---d~----------------  210 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK-LLR-------------------HL---DE----------------  210 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc-ccc-------------------cc---CH----------------
Confidence            5899999999999999999999999999998642 100                   00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+..+.+.  ++++++++.|++++.+++.+.+...++..+.+|.||+
T Consensus       211 -----------------------------~~~~~l~~~~~~--gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~  259 (452)
T TIGR03452       211 -----------------------------DISDRFTEIAKK--KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLV  259 (452)
T ss_pred             -----------------------------HHHHHHHHHHhc--CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEE
Confidence                                         011222223322  5999999999999877767777666667899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       260 a~G  262 (452)
T TIGR03452       260 ATG  262 (452)
T ss_pred             eec
Confidence            987

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.52  E-value=1.2e-06  Score=80.76  Aligned_cols=93  Identities=17%  Similarity=0.184  Sum_probs=66.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+|+|+.+. .        .+              ..++                
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-~--------l~--------------~~d~----------------  213 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-A--------LP--------------NEDA----------------  213 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC-c--------CC--------------ccCH----------------
Confidence            5899999999999999999999999999997642 0        00              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC--cc--ceeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN--VK--LRGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~--~~--~~~~a  245 (253)
                                                   .+ ..+.+.|.+.  |++|+++++|++++.+++.+.+...  ++  ..+.+
T Consensus       214 -----------------------------~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~  262 (466)
T PRK07818        214 -----------------------------EVSKEIAKQYKKL--GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEA  262 (466)
T ss_pred             -----------------------------HHHHHHHHHHHHC--CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEe
Confidence                                         01 1222233332  6999999999999876666555432  33  36999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       263 D~vi~a~G  270 (466)
T PRK07818        263 DKVLQAIG  270 (466)
T ss_pred             CEEEECcC
Confidence            99999987

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.52  E-value=1e-06  Score=81.17  Aligned_cols=93  Identities=18%  Similarity=0.252  Sum_probs=66.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||++|+.+|..|.+.|.+|+|+|+.+. .        .+              ..++                
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~-l--------l~--------------~~d~----------------  211 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ-L--------LP--------------GEDE----------------  211 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-c--------Cc--------------cccH----------------
Confidence            5899999999999999999999999999998642 1        00              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc-ceeecCEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK-LRGQFDVV  248 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~-~~~~ad~V  248 (253)
                                                   .+.. +.+.|.+ . |++++++++|++++.++..+.+..+++ ..+.+|.|
T Consensus       212 -----------------------------e~~~~l~~~L~~-~-GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~v  260 (458)
T PRK06912        212 -----------------------------DIAHILREKLEN-D-GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFV  260 (458)
T ss_pred             -----------------------------HHHHHHHHHHHH-C-CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEE
Confidence                                         0112 2222332 2 699999999999987666665543322 36899999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       261 ivA~G  265 (458)
T PRK06912        261 LVSVG  265 (458)
T ss_pred             EEecC
Confidence            99998

>TIGR02053 MerA mercuric reductase

Probab=98.51  E-value=8.2e-07  Score=81.82  Aligned_cols=94  Identities=16%  Similarity=0.262  Sum_probs=66.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|.+|+.+|..|.+.|.+|+|+|+.+. ..        +              ..++                
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l--------~--------------~~d~----------------  207 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR-LL--------P--------------REEP----------------  207 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-CC--------C--------------ccCH----------------
Confidence            5899999999999999999999999999998642 10        0              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC---ccceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN---VKLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~---~~~~~~ad~  247 (253)
                                                   .+...+...+++. +++++++++|++++.+++.+.+...   ++.++.+|.
T Consensus       208 -----------------------------~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~  257 (463)
T TIGR02053       208 -----------------------------EISAAVEEALAEE-GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADE  257 (463)
T ss_pred             -----------------------------HHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCE
Confidence                                         0122222222322 6999999999999877665555432   235799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       258 ViiA~G  263 (463)
T TIGR02053       258 LLVATG  263 (463)
T ss_pred             EEEeEC
Confidence            999987

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.51  E-value=9.9e-07  Score=79.17  Aligned_cols=54  Identities=22%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          200 GMRPLADSLLAQTS-MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       200 ~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ....++..|.+.+. |++++++++|++|+.+++.|.+.+.++..++||.||+|+|
T Consensus       133 dp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G  187 (381)
T TIGR03197       133 SPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANG  187 (381)
T ss_pred             ChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCC
Confidence            35677777776544 7999999999999988888988877766699999999998

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=9.1e-07  Score=72.39  Aligned_cols=108  Identities=23%  Similarity=0.288  Sum_probs=71.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC---CCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN---HGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ..|+|||+|+++-.+|++++++.++-++||-..   ...||.+.+..                                 
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT---------------------------------   55 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT---------------------------------   55 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee---------------------------------
Confidence            589999999999999999999999999999642   12333332110                                 


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeec
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQF  245 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~a  245 (253)
                                      .+..+|+......+    ..+.+.+.++..  |.+|... .|.++.....-+++.+ +.+.+.|
T Consensus        56 ----------------~veNfPGFPdgi~G----~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~  113 (322)
T KOG0404|consen   56 ----------------DVENFPGFPDGITG----PELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTA  113 (322)
T ss_pred             ----------------ccccCCCCCccccc----HHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceee
Confidence                            11222222211111    344444444433  5677654 6888888888888865 5578999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|||
T Consensus       114 ~avI~atG  121 (322)
T KOG0404|consen  114 DAVILATG  121 (322)
T ss_pred             eeEEEecc
Confidence            99999998

>PRK07846 mycothione reductase; Reviewed

Probab=98.50  E-value=4.3e-07  Score=83.48  Aligned_cols=39  Identities=18%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      +|++|||+|++|..+|..+  .|.+|+|+|+.  ..||.+-..
T Consensus         2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~--~~GGtC~n~   40 (451)
T PRK07846          2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG--TFGGTCLNV   40 (451)
T ss_pred             CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC--CCCCcccCc
Confidence            7999999999999998763  59999999986  378876443

>TIGR03452 mycothione_red mycothione reductase

Probab=98.49  E-value=2.9e-07  Score=84.65  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=32.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      +|++|||+|++|..+|..  ..|.+|+|+|++.  .||.+-..
T Consensus         3 yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~--~GGtC~n~   41 (452)
T TIGR03452         3 YDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT--FGGTCLNV   41 (452)
T ss_pred             cCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC--CCCeeecc
Confidence            899999999999998654  4699999999863  78876443

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06370 mercuric reductase; Validated

Probab=98.49  E-value=1.4e-06  Score=80.32  Aligned_cols=94  Identities=19%  Similarity=0.199  Sum_probs=66.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+|+|+.+. ....                      .++                
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-~l~~----------------------~~~----------------  212 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR-LLPR----------------------EDE----------------  212 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-CCcc----------------------cCH----------------
Confidence            5899999999999999999999999999998642 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEE--e-CccceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLS--E-NVKLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~--~-~~~~~~~ad~  247 (253)
                                                   .+...+...+++ .|++++++++|.+++..++...+.  . +++..+.+|.
T Consensus       213 -----------------------------~~~~~l~~~l~~-~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~  262 (463)
T PRK06370        213 -----------------------------DVAAAVREILER-EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSH  262 (463)
T ss_pred             -----------------------------HHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCE
Confidence                                         011222222222 269999999999998776655443  2 2345799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       263 Vi~A~G  268 (463)
T PRK06370        263 ILVAVG  268 (463)
T ss_pred             EEECcC
Confidence            999987

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.48  E-value=3.2e-07  Score=84.78  Aligned_cols=41  Identities=39%  Similarity=0.681  Sum_probs=35.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ...+|+|||||++|+++|+.|++.|++|+|||+.. ..||.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~-~~GG~l  182 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD-RIGGLL  182 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC-CCCcee
Confidence            34799999999999999999999999999999975 366543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.47  E-value=4.4e-07  Score=88.76  Aligned_cols=38  Identities=5%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|++|+.+..  .|.+.++..+.+|.||+|||
T Consensus        68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATG  105 (785)
T TIGR02374        68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATG  105 (785)
T ss_pred             CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCC
Confidence            699999999999987653  45556667899999999998

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.46  E-value=5.5e-07  Score=83.15  Aligned_cols=41  Identities=44%  Similarity=0.749  Sum_probs=35.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ...+|+|||+|++|+++|+.|++.|++|+|+|+.+ ..||.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~-~~gG~l  180 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP-EIGGLL  180 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCCcee
Confidence            34789999999999999999999999999999975 366644

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.45  E-value=1.9e-06  Score=79.52  Aligned_cols=93  Identities=19%  Similarity=0.165  Sum_probs=65.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|+.|+.+|..|.+.|.+|+|+|+.+. ..        +  .         +   ++                
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~-il--------~--~---------~---d~----------------  215 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR-IC--------P--G---------T---DT----------------  215 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC-CC--------C--C---------C---CH----------------
Confidence            5899999999999999999999999999998642 10        0  0         0   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC-----ccceee
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN-----VKLRGQ  244 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~-----~~~~~~  244 (253)
                                                   .+. .+.+.|.+.  ++++++++.|++++.+++++.+...     ++..+.
T Consensus       216 -----------------------------~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~  264 (466)
T PRK06115        216 -----------------------------ETAKTLQKALTKQ--GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQ  264 (466)
T ss_pred             -----------------------------HHHHHHHHHHHhc--CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEE
Confidence                                         011 222223222  6999999999999876666654421     235799


Q ss_pred             cCEEEEcCC
Q 047483          245 FDVVVIAHN  253 (253)
Q Consensus       245 ad~VV~AtG  253 (253)
                      +|.||+|+|
T Consensus       265 ~D~vi~a~G  273 (466)
T PRK06115        265 ADYVLVAIG  273 (466)
T ss_pred             eCEEEEccC
Confidence            999999987

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.45  E-value=1.6e-06  Score=80.19  Aligned_cols=33  Identities=36%  Similarity=0.577  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~  213 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD  213 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            589999999999999999999999999999864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.45  E-value=2.5e-06  Score=78.20  Aligned_cols=92  Identities=23%  Similarity=0.354  Sum_probs=66.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|+.|+.+|..|.+.|.+|+|+|++.. ....                      .++                
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~~~----------------  199 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASL-FLPR----------------------EDR----------------  199 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC-CCCC----------------------cCH----------------
Confidence            4899999999999999999999999999998642 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                   .+ ..+.+.|.+.  |+++++++.|++++.+++.+.+..++ +.+.+|.||
T Consensus       200 -----------------------------~~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~v~v~~~~-g~i~~D~vl  247 (441)
T PRK08010        200 -----------------------------DIADNIATILRDQ--GVDIILNAHVERISHHENQVQVHSEH-AQLAVDALL  247 (441)
T ss_pred             -----------------------------HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEEcC-CeEEeCEEE
Confidence                                         01 1222223322  69999999999998877667665544 468999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       248 ~a~G  251 (441)
T PRK08010        248 IASG  251 (441)
T ss_pred             Eeec
Confidence            9987

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.45  E-value=2.6e-06  Score=78.80  Aligned_cols=94  Identities=13%  Similarity=0.157  Sum_probs=66.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+|+|+.+. ....                      .++.+              
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~d~~~--------------  226 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA-FLAA----------------------ADEQV--------------  226 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc-cCCc----------------------CCHHH--------------
Confidence            5899999999999999999999999999998642 1000                      00000              


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc--c--ceeecC
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV--K--LRGQFD  246 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~--~--~~~~ad  246 (253)
                                                    ...+.+.|.+  .|++++++++|++|+.+++.+.+...+  +  ..+.+|
T Consensus       227 ------------------------------~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D  274 (475)
T PRK06327        227 ------------------------------AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVD  274 (475)
T ss_pred             ------------------------------HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcC
Confidence                                          0122222332  269999999999998776666655332  2  469999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       275 ~vl~a~G  281 (475)
T PRK06327        275 KLIVSIG  281 (475)
T ss_pred             EEEEccC
Confidence            9999987

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.44  E-value=5.2e-07  Score=86.55  Aligned_cols=40  Identities=43%  Similarity=0.669  Sum_probs=35.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+|+|||||++||++|+.|++.|++|+|||+.. ..||.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~-~~GG~l  232 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE-QAGGMM  232 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCcee
Confidence            4689999999999999999999999999999975 367654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.42  E-value=3.3e-06  Score=74.13  Aligned_cols=42  Identities=31%  Similarity=0.513  Sum_probs=37.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      ++||+|||+|+.|-.+|+..++.|++.+++|++. ..||.+-.
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~-~LGGTcLn   80 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG-TLGGTCLN   80 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEEEeccC-ccCceeee
Confidence            4899999999999999999999999999999975 48886543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.40  E-value=2e-06  Score=84.15  Aligned_cols=95  Identities=18%  Similarity=0.191  Sum_probs=68.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||++|+.+|..|++.|.+|+|+|+.+. .-.    .                                     
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~-ll~----~-------------------------------------  178 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG-LMA----K-------------------------------------  178 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc-hhh----h-------------------------------------
Confidence            5799999999999999999999999999998642 000    0                                     


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                          ...     ......+...+++. |+++++++.|++|..++....+.++++..+.+|.||+
T Consensus       179 --------------------~ld-----~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~  232 (785)
T TIGR02374       179 --------------------QLD-----QTAGRLLQRELEQK-GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVM  232 (785)
T ss_pred             --------------------hcC-----HHHHHHHHHHHHHc-CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEE
Confidence                                000     00122222222332 6999999999999765544556677778999999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       233 a~G  235 (785)
T TIGR02374       233 AAG  235 (785)
T ss_pred             CCC
Confidence            987

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.40  E-value=1.3e-06  Score=78.06  Aligned_cols=62  Identities=18%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             eCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeC-ccceeecCEEEEcCC
Q 047483          181 VGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSEN-VKLRGQFDVVVIAHN  253 (253)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~-~~~~~~ad~VV~AtG  253 (253)
                      ..+.++|.....         .++++.|...+.  ||+|+++++|++|  ++++|.+.+. ++..++||.||+|||
T Consensus        74 ~~grvfP~S~~A---------~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtG  138 (376)
T TIGR03862        74 SSGRVFPVEMKA---------APLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALG  138 (376)
T ss_pred             CCCEECCCCCCH---------HHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCC
Confidence            456777766665         666666665443  7999999999999  3445777654 335699999999998

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.38  E-value=3.1e-06  Score=78.83  Aligned_cols=92  Identities=18%  Similarity=0.141  Sum_probs=66.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||..|+.+|..|++.|.+|+|+++... . ..     +                 ++                
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-l-~~-----~-----------------d~----------------  222 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP-L-RG-----F-----------------DR----------------  222 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc-c-cc-----C-----------------CH----------------
Confidence            4799999999999999999999999999986310 0 00     0                 00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                   .+. .+.+.|.+.  ++++++++.|.+++..++...+...++..+.+|.||
T Consensus       223 -----------------------------~~~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl  271 (499)
T PTZ00052        223 -----------------------------QCSEKVVEYMKEQ--GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVL  271 (499)
T ss_pred             -----------------------------HHHHHHHHHHHHc--CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEE
Confidence                                         011 222223222  699999999999987666666666666789999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|.|
T Consensus       272 ~a~G  275 (499)
T PTZ00052        272 YATG  275 (499)
T ss_pred             EeeC
Confidence            9987

>PRK14727 putative mercuric reductase; Provisional

Probab=98.37  E-value=3.4e-06  Score=78.17  Aligned_cols=92  Identities=12%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+|+++... .         ..    +          ++.               
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-l---------~~----~----------d~~---------------  229 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL-L---------FR----E----------DPL---------------  229 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC-C---------Cc----c----------hHH---------------
Confidence            5799999999999999999999999999986421 0         00    0          000               


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                           .        ...+.+.|.+.  |++++++++|++++.+++.+.+...+ +.+.+|.||+
T Consensus       230 ---------------------~--------~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~Vlv  277 (479)
T PRK14727        230 ---------------------L--------GETLTACFEKE--GIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLI  277 (479)
T ss_pred             ---------------------H--------HHHHHHHHHhC--CCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEE
Confidence                                 0        01222223222  69999999999998777777776544 5799999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       278 A~G  280 (479)
T PRK14727        278 STG  280 (479)
T ss_pred             ccC
Confidence            987

>PRK13748 putative mercuric reductase; Provisional

Probab=98.37  E-value=3.6e-06  Score=79.46  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=66.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|..|+.+|..|.+.|.+|+|+++...          +.              ..++.               
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~----------l~--------------~~d~~---------------  311 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL----------FF--------------REDPA---------------  311 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc----------cc--------------ccCHH---------------
Confidence            5899999999999999999999999999997421          00              00000               


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                    +. .+.+.|.+.  |+++++++.|++++.+++.+.+..++ +.+.+|.||
T Consensus       312 ------------------------------~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi  358 (561)
T PRK13748        312 ------------------------------IGEAVTAAFRAE--GIEVLEHTQASQVAHVDGEFVLTTGH-GELRADKLL  358 (561)
T ss_pred             ------------------------------HHHHHHHHHHHC--CCEEEcCCEEEEEEecCCEEEEEecC-CeEEeCEEE
Confidence                                          11 222223222  69999999999998777766665544 479999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       359 ~a~G  362 (561)
T PRK13748        359 VATG  362 (561)
T ss_pred             EccC
Confidence            9987

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.37  E-value=8.7e-07  Score=84.86  Aligned_cols=40  Identities=43%  Similarity=0.747  Sum_probs=35.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+|+|||+|++||++|+.|++.|++|+|||+.. ..||.+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~-~~GG~l  349 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP-EIGGML  349 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC-CCCCee
Confidence            4789999999999999999999999999999985 366654

>PRK14694 putative mercuric reductase; Provisional

Probab=98.36  E-value=4.3e-06  Score=77.20  Aligned_cols=92  Identities=14%  Similarity=0.215  Sum_probs=65.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|++|+.+|..|++.|.+|+++++... .         ..              .++                
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~-l---------~~--------------~~~----------------  218 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV-L---------SQ--------------EDP----------------  218 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC-C---------CC--------------CCH----------------
Confidence            5899999999999999999999999999986421 0         00              000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++. |+++++++.|.+++.+++.+.+.+++ +.+.+|.||+
T Consensus       219 -----------------------------~~~~~l~~~l~~~-GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~  267 (468)
T PRK14694        219 -----------------------------AVGEAIEAAFRRE-GIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLV  267 (468)
T ss_pred             -----------------------------HHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEE
Confidence                                         0111222222222 69999999999998777666665544 5799999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       268 a~G  270 (468)
T PRK14694        268 ATG  270 (468)
T ss_pred             ccC
Confidence            987

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.35  E-value=3.2e-06  Score=78.12  Aligned_cols=92  Identities=15%  Similarity=0.256  Sum_probs=65.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+.+|..|.+.|.+|+|+|+.+. .        .+              ..++                
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-i--------l~--------------~~d~----------------  215 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-V--------IP--------------AADK----------------  215 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-C--------CC--------------cCCH----------------
Confidence            5899999999999999999999999999998642 1        00              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc----cceeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV----KLRGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~----~~~~~a  245 (253)
                                                   .+.. +.+.|.++   +++++++.|++++..++.+.+...+    ...+.+
T Consensus       216 -----------------------------~~~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~  263 (471)
T PRK06467        216 -----------------------------DIVKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRY  263 (471)
T ss_pred             -----------------------------HHHHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEe
Confidence                                         0112 22222222   7899999999998776666665332    236999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       264 D~vi~a~G  271 (471)
T PRK06467        264 DAVLVAVG  271 (471)
T ss_pred             CEEEEeec
Confidence            99999987

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.35  E-value=2.3e-06  Score=76.80  Aligned_cols=33  Identities=33%  Similarity=0.590  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      .+|||||||.+|+.+|..|.++-  .+|+++|++.
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~   38 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD   38 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence            68999999999999999999974  9999999975

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.34  E-value=4.5e-06  Score=77.43  Aligned_cols=93  Identities=23%  Similarity=0.191  Sum_probs=64.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      .+++|||||+.|+.+|..+..   .|.+|+|+|+.+. +...                      .++             
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~-il~~----------------------~d~-------------  231 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM-ILRG----------------------FDS-------------  231 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc-cccc----------------------cCH-------------
Confidence            589999999999999976654   4999999998642 1000                      000             


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeec
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQF  245 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~a  245 (253)
                                                      .+ ..+.+.|.+.  |+++++++.|++++.++++ ..+..+++..+.+
T Consensus       232 --------------------------------~~~~~l~~~L~~~--GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~  277 (486)
T TIGR01423       232 --------------------------------TLRKELTKQLRAN--GINIMTNENPAKVTLNADGSKHVTFESGKTLDV  277 (486)
T ss_pred             --------------------------------HHHHHHHHHHHHc--CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEc
Confidence                                            01 2233333332  6999999999999875443 4555556678999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       278 D~vl~a~G  285 (486)
T TIGR01423       278 DVVMMAIG  285 (486)
T ss_pred             CEEEEeeC
Confidence            99999987

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.34  E-value=1.7e-06  Score=80.25  Aligned_cols=40  Identities=38%  Similarity=0.634  Sum_probs=34.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+|+|||+|++|+++|..|++.|++|+|||+.. ..||.+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~-~~gG~l  182 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED-RCGGLL  182 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CCCcee
Confidence            3699999999999999999999999999999875 356543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.34  E-value=4.8e-06  Score=76.23  Aligned_cols=94  Identities=18%  Similarity=0.254  Sum_probs=64.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|.+.|.+|+++++... .        ..          ..+   +                 
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~--------l~----------~~~---~-----------------  190 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR-I--------LP----------DSF---D-----------------  190 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc-c--------Cc----------hhc---C-----------------
Confidence            5899999999999999999999999999997642 0        00          000   0                 


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                  +.+...+...+++. |++++++++|++++.++..+.+.. +++.+.+|.||+
T Consensus       191 ----------------------------~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~  240 (444)
T PRK09564        191 ----------------------------KEITDVMEEELREN-GVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIV  240 (444)
T ss_pred             ----------------------------HHHHHHHHHHHHHC-CCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEE
Confidence                                        00122222222332 699999999999975444444444 345899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       241 a~G  243 (444)
T PRK09564        241 ATG  243 (444)
T ss_pred             CcC
Confidence            987

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=98.33  E-value=3.8e-06  Score=75.82  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=43.2

Q ss_pred             HHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483          104 ACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus       104 ~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +||+.|+++|++|+|||++. .+||+..+...+..+..+|.|.+++....+.+.+++++
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~-~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~   58 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARP-RLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRR   58 (419)
T ss_pred             ChHHHHHhCCCceEEEecCC-CCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHH
Confidence            48999999999999999986 59999887655433334788887776555555555554

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.33  E-value=4e-06  Score=77.79  Aligned_cols=92  Identities=17%  Similarity=0.250  Sum_probs=65.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||..|+.+|..|++.|.+|+|+++. . .        .+  .  +          ++                
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-~--------l~--~--~----------d~----------------  220 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-L--------LR--G--F----------DQ----------------  220 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-c--------cc--c--c----------CH----------------
Confidence            47999999999999999999999999999863 1 0        00  0  0          00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc---ceeecC
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK---LRGQFD  246 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~---~~~~ad  246 (253)
                                                   .+.. +.+.|.++  |+++++++.+++++..++...++.+++   .++.+|
T Consensus       221 -----------------------------~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D  269 (484)
T TIGR01438       221 -----------------------------DCANKVGEHMEEH--GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYD  269 (484)
T ss_pred             -----------------------------HHHHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeC
Confidence                                         0122 22233322  699999999999987666655554433   379999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       270 ~vl~a~G  276 (484)
T TIGR01438       270 TVLLAIG  276 (484)
T ss_pred             EEEEEec
Confidence            9999987

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.33  E-value=4e-06  Score=76.43  Aligned_cols=93  Identities=22%  Similarity=0.277  Sum_probs=65.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|++.|.+|+++++... ...                  ..+   ++                
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~~~------------------~~~---~~----------------  179 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER-ILN------------------KLF---DE----------------  179 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc-cCc------------------ccc---CH----------------
Confidence            5899999999999999999999999999998642 100                  000   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++. |+++++++.|.+++.++. + +...++..+.+|.||+
T Consensus       180 -----------------------------~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~  227 (427)
T TIGR03385       180 -----------------------------EMNQIVEEELKKH-EINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVIL  227 (427)
T ss_pred             -----------------------------HHHHHHHHHHHHc-CCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEE
Confidence                                         0122222222222 699999999999976543 3 3445667899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       228 a~G  230 (427)
T TIGR03385       228 ATG  230 (427)
T ss_pred             CCC
Confidence            987

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.30  E-value=3.8e-07  Score=74.02  Aligned_cols=42  Identities=29%  Similarity=0.494  Sum_probs=33.9

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~  130 (253)
                      .+.||+|||+|.+||++||..+++  .++|.|+|..-..-||.|
T Consensus        75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            347999999999999999999865  789999998643234444

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.29  E-value=6e-06  Score=81.26  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+.+|..|.+.|.+|+|+|+.+. .                      +.                    
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~-l----------------------l~--------------------  182 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM-L----------------------MA--------------------  182 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc-c----------------------hh--------------------
Confidence            5799999999999999999999999999998642 0                      00                    


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC--CeEEEEeCccceeecCEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN--GMWHLSENVKLRGQFDVV  248 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~--~~~~v~~~~~~~~~ad~V  248 (253)
                                         ....     ......+...+++. |+++++++.|++|..++  ....+.++++..+.+|.|
T Consensus       183 -------------------~~ld-----~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~V  237 (847)
T PRK14989        183 -------------------EQLD-----QMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFI  237 (847)
T ss_pred             -------------------hhcC-----HHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEE
Confidence                               0000     00122223333333 69999999999997643  234466677789999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       238 v~A~G  242 (847)
T PRK14989        238 VFSTG  242 (847)
T ss_pred             EECCC
Confidence            99987

>PTZ00058 glutathione reductase; Provisional

Probab=98.29  E-value=6.7e-06  Score=77.45  Aligned_cols=93  Identities=18%  Similarity=0.328  Sum_probs=65.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||..|+.+|..|.+.|.+|+|+|+++. ..        +           .+   ++                
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~-il--------~-----------~~---d~----------------  278 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR-LL--------R-----------KF---DE----------------  278 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc-cc--------c-----------cC---CH----------------
Confidence            6899999999999999999999999999998642 00        0           00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCc-cceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENV-KLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~-~~~~~ad~  247 (253)
                                                   .+ ..+.+.|.+.  |+++++++.|.+++.+++ ++.+...+ +..+.+|.
T Consensus       279 -----------------------------~i~~~l~~~L~~~--GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~  327 (561)
T PTZ00058        279 -----------------------------TIINELENDMKKN--NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDY  327 (561)
T ss_pred             -----------------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCE
Confidence                                         01 1222333332  699999999999986543 45544333 34799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       328 VlvA~G  333 (561)
T PTZ00058        328 VIYCVG  333 (561)
T ss_pred             EEECcC
Confidence            999987

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.29  E-value=6.8e-06  Score=72.02  Aligned_cols=53  Identities=19%  Similarity=0.051  Sum_probs=40.7

Q ss_pred             hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...++..|++.+.  |++++++++|++|+.+++.|....++++.++||.||+|+|
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G  190 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAG  190 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCC
Confidence            4666666665433  7999999999999988877653334445899999999998

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.27  E-value=7.2e-06  Score=78.46  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||..|+.+|..|.+.|.+|+|+|+.+
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~  345 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP  345 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            479999999999999999999999999999864

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.27  E-value=2.7e-06  Score=75.22  Aligned_cols=145  Identities=12%  Similarity=0.041  Sum_probs=83.9

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccc-cccCCCccccccccceeccCch-hHHHHHHhhh
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFTVNDS-RFHELVDGWL  164 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  164 (253)
                      ...+|++.||-||.-|++|..|.+++ .++..+||.+.   =+|.. ..++...+.......+....++ .--.+++.+ 
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~---F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL-   78 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD---FSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL-   78 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC---CCcCCCcccCCccccccchhhhccccCCCCchHHHHHH-
Confidence            34589999999999999999999975 88999999753   11111 0112111111111112211111 001111111 


Q ss_pred             hccccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC--CeEE--EEeCcc
Q 047483          165 ERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN--GMWH--LSENVK  240 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~--~~~~--v~~~~~  240 (253)
                                     ...+.++.+-.....++.+....++|+..+.+++  .++|+++|++|...+  ....  +.+.++
T Consensus        79 ---------------~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~~~~d~~~~~~~~t~~~  141 (436)
T COG3486          79 ---------------HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISSLDGDAVVRLFVVTANG  141 (436)
T ss_pred             ---------------HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccccCCcceeEEEEEcCCC
Confidence                           1112223332222334444556899998888874  889999999884432  2222  445666


Q ss_pred             ceeecCEEEEcCC
Q 047483          241 LRGQFDVVVIAHN  253 (253)
Q Consensus       241 ~~~~ad~VV~AtG  253 (253)
                      ..++|+.||+.+|
T Consensus       142 ~~y~ar~lVlg~G  154 (436)
T COG3486         142 TVYRARNLVLGVG  154 (436)
T ss_pred             cEEEeeeEEEccC
Confidence            7999999999987

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=98.27  E-value=8.1e-06  Score=72.35  Aligned_cols=47  Identities=19%  Similarity=0.306  Sum_probs=35.5

Q ss_pred             HHHhhcCCcEEEcCeEEEEEEEe-------CCeE-EEEeCccceeecCEEEEcCC
Q 047483          207 SLLAQTSMVSIVRPCWISNLQPF-------NGMW-HLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       207 ~l~~~~~gv~i~~~t~V~~i~~~-------~~~~-~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+.+..++++|...++|.++...       ++.| .++.+++..+..|.+|.|+|
T Consensus       160 ~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg  214 (481)
T KOG3855|consen  160 QLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADG  214 (481)
T ss_pred             HHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeecccc
Confidence            34445557999999998888652       2234 56678888999999999997

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.26  E-value=5.8e-06  Score=75.75  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||..|+.+|..|++.|.+|+|+|+.+
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  181 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD  181 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            589999999999999999999999999999864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.25  E-value=9.9e-06  Score=74.58  Aligned_cols=33  Identities=42%  Similarity=0.805  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+++|+.+
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~  202 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD  202 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            589999999999999999999999999999864

>PRK13984 putative oxidoreductase; Provisional

Probab=98.25  E-value=3.3e-06  Score=80.41  Aligned_cols=40  Identities=35%  Similarity=0.551  Sum_probs=35.0

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ...+|+|||+|++|+++|..|+++|++|+|||+.. ..||.
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~-~~gG~  321 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS-KPGGV  321 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCce
Confidence            34789999999999999999999999999999975 35554

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.22  E-value=2.6e-05  Score=67.69  Aligned_cols=36  Identities=33%  Similarity=0.508  Sum_probs=31.8

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~  123 (253)
                      +...||+|||||..|++.|+.|+++    |++|+|+|++.
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd  123 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD  123 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence            3458999999999999999999874    79999999964

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.22  E-value=1.3e-06  Score=78.59  Aligned_cols=40  Identities=40%  Similarity=0.705  Sum_probs=36.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+++|||||++|+.+|+.|++.|++|.++||++ .+||+..
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKep-siGGrma  164 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEP-SIGGRMA  164 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC-cccccHH
Confidence            579999999999999999999999999999987 4898754

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.20  E-value=8.4e-06  Score=73.18  Aligned_cols=96  Identities=21%  Similarity=0.246  Sum_probs=70.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+++|||+|+.|+.+|..|.++|++|+++|+... .++....                                     
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~-~~~~~~~-------------------------------------  177 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR-LGGQLLD-------------------------------------  177 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccc-cchhhhh-------------------------------------
Confidence            36899999999999999999999999999999753 3332100                                     


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEE---EEeCccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH---LSENVKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~---v~~~~~~~~~ad  246 (253)
                                                   ..+...+..+.++. ++++++++.+.+|+..++...   +...++..+.+|
T Consensus       178 -----------------------------~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d  227 (415)
T COG0446         178 -----------------------------PEVAEELAELLEKY-GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKAD  227 (415)
T ss_pred             -----------------------------HHHHHHHHHHHHHC-CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEee
Confidence                                         01123333334443 499999999999987765533   455667789999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .|+++.|
T Consensus       228 ~~~~~~g  234 (415)
T COG0446         228 LVIIGPG  234 (415)
T ss_pred             EEEEeec
Confidence            9999875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=3.6e-06  Score=73.09  Aligned_cols=110  Identities=18%  Similarity=0.300  Sum_probs=71.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+||||||+|.++|++.+++|++.-|+-.+   .||..    .+--+  .                  +.      
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer---fGGQv----ldT~~--I------------------EN------  256 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER---FGGQV----LDTMG--I------------------EN------  256 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh---hCCee----ccccc--h------------------hh------
Confidence            4599999999999999999999999876655321   34422    11000  0                  00      


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEe---CCeEEEEeCccceeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPF---NGMWHLSENVKLRGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~---~~~~~v~~~~~~~~~a  245 (253)
                                      +...     .+...+.+..-+++..++++ +++..-.+.+++++.   ++-..|++.++..+++
T Consensus       257 ----------------fIsv-----~~teGpkl~~ale~Hv~~Y~-vDimn~qra~~l~~a~~~~~l~ev~l~nGavLka  314 (520)
T COG3634         257 ----------------FISV-----PETEGPKLAAALEAHVKQYD-VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKA  314 (520)
T ss_pred             ----------------eecc-----ccccchHHHHHHHHHHhhcC-chhhhhhhhhcceecCCCCccEEEEecCCceecc
Confidence                            0000     01111123344445555565 888888888888774   4557888899999999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      +-||++||
T Consensus       315 ktvIlstG  322 (520)
T COG3634         315 RTVILATG  322 (520)
T ss_pred             ceEEEecC
Confidence            99999998

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.18  E-value=6.3e-06  Score=74.02  Aligned_cols=47  Identities=19%  Similarity=0.072  Sum_probs=34.0

Q ss_pred             HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccc-eeecCEEEEcCC
Q 047483          202 RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKL-RGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~-~~~ad~VV~AtG  253 (253)
                      ..+++.++++. |++|++++.|++++.+  .+.+  .++. .+.++.||-|+|
T Consensus       212 ~~~a~~~L~~~-GV~v~l~~~Vt~v~~~--~v~~--~~g~~~I~~~tvvWaaG  259 (405)
T COG1252         212 SKYAERALEKL-GVEVLLGTPVTEVTPD--GVTL--KDGEEEIPADTVVWAAG  259 (405)
T ss_pred             HHHHHHHHHHC-CCEEEcCCceEEECCC--cEEE--ccCCeeEecCEEEEcCC
Confidence            45555555554 6999999999999754  3433  3444 599999999987

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.15  E-value=1.9e-06  Score=74.52  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~  124 (253)
                      +|+||||+|.+|+.+|.+|++.| .+|+|||++..
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            59999999999999999999997 79999999854

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02546 glutathione reductase

Probab=98.15  E-value=2e-05  Score=74.29  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||..|+.+|..|++.|.+|+|+|+.+
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~  285 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK  285 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence            589999999999999999999999999999864

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.14  E-value=1.8e-05  Score=72.15  Aligned_cols=36  Identities=11%  Similarity=-0.097  Sum_probs=29.1

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      |++++++++|+++..  +.  +.++++.++.+|.||.|.|
T Consensus       242 gV~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G  277 (424)
T PTZ00318        242 GVDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTG  277 (424)
T ss_pred             CCEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccC
Confidence            699999999999864  33  3456677899999999987

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.12  E-value=6.2e-06  Score=73.08  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=30.4

Q ss_pred             CcEEEcCeEEEEEEEeC-CeEEEEeCc-----cceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFN-GMWHLSENV-----KLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~-~~~~v~~~~-----~~~~~ad~VV~AtG  253 (253)
                      .+.|+.+++|++++..+ ++|.+...+     ...+.+|.||+|||
T Consensus       293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG  338 (341)
T PF13434_consen  293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG  338 (341)
T ss_dssp             -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred             CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence            48999999999999988 488887443     35789999999998

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.10  E-value=4.1e-06  Score=80.51  Aligned_cols=41  Identities=51%  Similarity=0.802  Sum_probs=36.3

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ...+|+|||||++||++|+.|++.|++|+|||+.. ..||.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~-~~GG~l  366 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP-EIGGLL  366 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCcee
Confidence            34799999999999999999999999999999975 477754

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.09  E-value=1.7e-06  Score=78.76  Aligned_cols=41  Identities=37%  Similarity=0.679  Sum_probs=36.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ++||+|||||.+|..||+..+-+|++|.++|+++.++|-..
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS  107 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence            48999999999999999999999999999999976666443

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.09  E-value=9.4e-06  Score=68.88  Aligned_cols=39  Identities=28%  Similarity=0.584  Sum_probs=33.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC------CeEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG------VKSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g------~~v~~~e~~~~~~gg~  129 (253)
                      ..+|+|||||+.|.++||.|++++      ..|+|||+... .||.
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I-A~ga   54 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI-AGGA   54 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc-cccc
Confidence            368999999999999999999987      89999999743 4443

>PRK02106 choline dehydrogenase; Validated

Probab=98.01  E-value=7e-06  Score=77.53  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=32.7

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhH-cCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDK-RGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e~~~  123 (253)
                      .++|+||||+|.+|+.+|..|++ .|++|+|||++.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            45899999999999999999999 799999999984

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.01  E-value=9.1e-05  Score=67.62  Aligned_cols=40  Identities=28%  Similarity=0.436  Sum_probs=33.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCCCCCCCCcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+.=|||+|+++|++|..|.+.    |-+|+|||+.. ..||.+-
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~-~~GGsld   46 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELD-VPGGSLD   46 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCC-CCCCccc
Confidence            4677999999999999999885    67999999975 4666443

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.01  E-value=6.9e-05  Score=70.13  Aligned_cols=33  Identities=30%  Similarity=0.513  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||..|+.+|..|++.|.+|+|+|+.+
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence            589999999999999999999999999999753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.97  E-value=1.7e-05  Score=74.18  Aligned_cols=39  Identities=23%  Similarity=0.139  Sum_probs=34.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||+|++|+.+|+.|+++|++|+|||++.. .|+.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~-~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAA-DSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCc-cCCCc
Confidence            5999999999999999999999999999999853 55555

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.96  E-value=9.8e-06  Score=79.60  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ...+|+|||||++||++|+.|+++|++|+|+|+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            4579999999999999999999999999999985

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.90  E-value=2e-05  Score=72.47  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=33.4

Q ss_pred             CcEEEECcCHHHHHHHHHHh-HcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLD-KRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~-~~g~~v~~~e~~~~~~gg~~  130 (253)
                      .+|+|||||++|+.+|..|. +.|++|+|||+.+ .+||.+
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p-~pgGLv   79 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP-NPYGLI   79 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC-CCccEE
Confidence            68999999999999999865 5699999999986 477743

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.90  E-value=1.4e-05  Score=72.71  Aligned_cols=33  Identities=36%  Similarity=0.629  Sum_probs=31.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||+|++|+++|+.|+++|++|+|+|++.
T Consensus         3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            799999999999999999999999999999863

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.90  E-value=1.5e-05  Score=68.89  Aligned_cols=34  Identities=41%  Similarity=0.888  Sum_probs=31.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||||++|++||++|.++|+++.|+.++.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            4899999999999999999999999999999864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.87  E-value=0.00022  Score=61.28  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~  173 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR  173 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence            58999999999999999999999999999985

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.87  E-value=7.2e-05  Score=67.16  Aligned_cols=38  Identities=34%  Similarity=0.598  Sum_probs=34.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++|++|||+|..||.+|..|++.|.+|+++|+. +..||
T Consensus        14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerr-hv~gG   51 (561)
T KOG4254|consen   14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR-HVIGG   51 (561)
T ss_pred             ccceEEecCCccchhHHHHHHhcCcceEEEEEe-eecCc
Confidence            489999999999999999999999999999997 34555

>PRK10262 thioredoxin reductase; Provisional

Probab=97.86  E-value=0.00013  Score=63.92  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++..
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            3689999999999999999999999999999863

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.86  E-value=0.0002  Score=65.86  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.83  E-value=0.00021  Score=65.82  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ..+|+|||+|.+|+-+|..|.+.|. +|+++++.
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~  306 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR  306 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            3689999999999999999999998 89999975

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.81  E-value=0.00016  Score=64.40  Aligned_cols=36  Identities=11%  Similarity=-0.027  Sum_probs=29.1

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ++++++++.|++++.  +  .+.+.++..+.+|.||+|+|
T Consensus       205 gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G  240 (364)
T TIGR03169       205 GIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATG  240 (364)
T ss_pred             CCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccC
Confidence            699999999998853  2  34455667899999999987

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.00011  Score=66.47  Aligned_cols=38  Identities=26%  Similarity=0.453  Sum_probs=33.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG  127 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g  127 (253)
                      .+||+|||||-+|+.+|.+.++-|.+.+++-.+-..+|
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig   65 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG   65 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence            38999999999999999999999999999988654444

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.79  E-value=3.3e-05  Score=73.06  Aligned_cols=41  Identities=44%  Similarity=0.772  Sum_probs=35.9

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ...+|+|||+|++||++|+.|++.|++|+|+|+.. ..||.+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~-~~GG~l  176 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP-KLGGMM  176 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCee
Confidence            34689999999999999999999999999999975 477644

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.79  E-value=2.3e-05  Score=73.63  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=33.1

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..++|+||||+|.+|+.+|..|++.|++|+|||++.
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            345899999999999999999998899999999973

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.78  E-value=0.00025  Score=63.07  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVK-STVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~  122 (253)
                      .+|+|||+|..|+.+|..|.+.|.+ |+|+++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            5799999999999999999999987 9999975

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.78  E-value=0.00022  Score=65.04  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=33.4

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      +.++||+|+|.|+.-+.+|-.|++.|.+|+.+|+++ --||.+++.
T Consensus         2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~-yYGg~~asl   46 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRND-YYGGEWASL   46 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SSCGGG-EE
T ss_pred             CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC-CcCCchhcc
Confidence            456999999999999999999999999999999996 478866543

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.73  E-value=3e-05  Score=71.11  Aligned_cols=40  Identities=40%  Similarity=0.506  Sum_probs=36.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+|+|||+||+||++|..|++.|+.|+|+|+.. ..||++.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~-~~GGll~  163 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA-LDGGLLL  163 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC-CCceeEE
Confidence            689999999999999999999999999999975 5888653

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.71  E-value=0.00035  Score=65.40  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||.+|+.+|..|+..+.+|+|+++.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~  384 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP  384 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence            589999999999999999999999999999764

>PRK12831 putative oxidoreductase; Provisional

Probab=97.71  E-value=0.0006  Score=63.03  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+|+|||||.+|+-+|..|.+.|.+|+++++.
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            468999999999999999999999999999975

>TIGR01810 betA choline dehydrogenase

Probab=97.67  E-value=4e-05  Score=71.96  Aligned_cols=32  Identities=34%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      |+||||+|.+|+.+|.+|++.| ++|+|||++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            7999999999999999999998 7999999985

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.61  E-value=0.00044  Score=62.61  Aligned_cols=97  Identities=19%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ....|++||+|..|+.+|..|...+.+|+++++.+. .        .+          .+|                   
T Consensus       212 ~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~-~--------~~----------~lf-------------------  253 (478)
T KOG1336|consen  212 LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW-L--------LP----------RLF-------------------  253 (478)
T ss_pred             cCceEEEECchHHHHHHHHHHHhcCceEEEEccCcc-c--------hh----------hhh-------------------
Confidence            346799999999999999999999999999998642 0        00          000                   


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC-Ce-EEEEeCccceeecC
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN-GM-WHLSENVKLRGQFD  246 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~-~~-~~v~~~~~~~~~ad  246 (253)
                                                   ...+++....+.+. ++++++.++.+.+++.+. +. ..|...++..+.||
T Consensus       254 -----------------------------~~~i~~~~~~y~e~-kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad  303 (478)
T KOG1336|consen  254 -----------------------------GPSIGQFYEDYYEN-KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD  303 (478)
T ss_pred             -----------------------------hHHHHHHHHHHHHh-cCeEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence                                         00123333333332 269999999999998765 33 45667888999999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+++|
T Consensus       304 lvv~GiG  310 (478)
T KOG1336|consen  304 LVVVGIG  310 (478)
T ss_pred             eEEEeec
Confidence            9999887

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00035  Score=60.59  Aligned_cols=33  Identities=30%  Similarity=0.611  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|-|||||++|..+||+++++|++|.++|-++
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence            468999999999999999999999999999875

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.55  E-value=0.00085  Score=62.82  Aligned_cols=53  Identities=15%  Similarity=0.030  Sum_probs=37.6

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEE-EEe--C-c--cceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWH-LSE--N-V--KLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~-v~~--~-~--~~~~~ad~VV~AtG  253 (253)
                      ...++..++...  .|++|+++++|++|+++++.+. +..  . +  ...++|+.||+|+|
T Consensus       127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG  187 (516)
T TIGR03377       127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAG  187 (516)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCC
Confidence            455555554433  2799999999999998777642 332  1 2  24799999999998

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.47  E-value=4.3e-05  Score=65.83  Aligned_cols=34  Identities=21%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-C-CeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-G-VKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g-~~v~~~e~~~  123 (253)
                      .+.|+|||||..|+++|..+.++ | -+|.|+|..+
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            47999999999999999999886 4 4899999764

>PLN02785 Protein HOTHEAD

Probab=97.47  E-value=0.00013  Score=69.17  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=30.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+||||||.+|+.+|..|++ +.+|+|||++.
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            3899999999999999999999 69999999985

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.41  E-value=0.0019  Score=62.20  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+-+|..|.+.|. +|+|+++..
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4689999999999999999999986 699998753

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.38  E-value=0.00088  Score=58.58  Aligned_cols=43  Identities=33%  Similarity=0.466  Sum_probs=37.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      .+|.+|||||..|++.|.+.++.|.+|.|+|.. .+.||.+-..
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~-f~lGGTCVn~   62 (478)
T KOG0405|consen   20 DFDYLVIGGGSGGVASARRAASHGAKVALCELP-FGLGGTCVNV   62 (478)
T ss_pred             ccceEEEcCCcchhHHhHHHHhcCceEEEEecC-CCcCceEEee
Confidence            489999999999999999999999999999975 3688876443

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.35  E-value=0.00029  Score=62.11  Aligned_cols=37  Identities=35%  Similarity=0.447  Sum_probs=32.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGG  128 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg  128 (253)
                      ..|+|||+||+|+.+|++|.++  +++|.|+|+.+. +.|
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFG   59 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFG   59 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccc
Confidence            5899999999999999999985  699999999864 555

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.34  E-value=0.0025  Score=62.43  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=30.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVK-STVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~  123 (253)
                      ..+|+|||||.+|+-+|..|.+.|.+ |+|+++..
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            36899999999999999999999987 99999763

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.33  E-value=0.0033  Score=58.22  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=28.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ..+|+|||+|.+|+-+|..+.+.|. +|++++..
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence            3589999999999999999888886 78877654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.25  E-value=0.0033  Score=59.47  Aligned_cols=34  Identities=32%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||||.+|+.+|..|++.|.+|+++++.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            3689999999999999999999999999999863

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.24  E-value=0.00038  Score=68.66  Aligned_cols=40  Identities=43%  Similarity=0.674  Sum_probs=36.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+|+|||+|++||++|-.|-+.|+.|+|+||.. ..||-+
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~d-r~ggll 1824 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD-RVGGLL 1824 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC-CcCcee
Confidence            3689999999999999999999999999999985 588743

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.21  E-value=0.0037  Score=62.56  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+|+|||||.+|+-+|..+.+.|.+|+++.++
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr  479 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR  479 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence            368999999999999999999999999999875

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.15  E-value=0.0051  Score=62.06  Aligned_cols=33  Identities=12%  Similarity=0.175  Sum_probs=29.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ..+|+|||+|..|+.+|..|++.|. .|+|+|..
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~  350 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR  350 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence            3689999999999999999999995 68899875

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.14  E-value=0.0065  Score=56.25  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+-+|..+.+.|. +|+|+++..
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            689999999999999999999995 799999863

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.08  E-value=0.00066  Score=64.53  Aligned_cols=95  Identities=19%  Similarity=0.196  Sum_probs=67.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      ..-+|||||+-||.+|..|.+.|.+|+|++-.+.                       +       +...++.        
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~-----------------------l-------MerQLD~--------  187 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT-----------------------L-------MERQLDR--------  187 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecch-----------------------H-------HHHhhhh--------
Confidence            4579999999999999999999999999996531                       0       0000000        


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                          .         -..+++..+++. |+++++++..+.|...+.-..+.+.++..+.||.||.
T Consensus       188 --------------------~---------ag~lL~~~le~~-Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~  237 (793)
T COG1251         188 --------------------T---------AGRLLRRKLEDL-GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVM  237 (793)
T ss_pred             --------------------H---------HHHHHHHHHHhh-cceeecccchhhhhcCcceeeEeecCCCcccceeEEE
Confidence                                0         023334333333 6899988888888764444467788999999999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       238 a~G  240 (793)
T COG1251         238 AVG  240 (793)
T ss_pred             ecc
Confidence            987

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.08  E-value=0.00063  Score=63.81  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNH  124 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~  124 (253)
                      .++|.+|||||-+|+.+|..|++. .++|+|+|++..
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~   92 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD   92 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence            349999999999999999999997 689999999754

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.05  E-value=0.0035  Score=56.89  Aligned_cols=38  Identities=8%  Similarity=0.020  Sum_probs=32.9

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ++++++++.|+.++.....  |...++.++.++.+|+|||
T Consensus       141 gIe~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATG  178 (478)
T KOG1336|consen  141 GIELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATG  178 (478)
T ss_pred             CceEEEcceeEEeeccccE--EEeCCCceeecceEEEeec
Confidence            5999999999999877665  4467788999999999998

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.01  E-value=0.0022  Score=59.17  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+|+|||+|.+|+-.|..|++.+.+|+++.+.
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~  236 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRA  236 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence            368999999999999999999999999999975

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.96  E-value=0.0087  Score=59.88  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=29.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-C-CeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-G-VKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g-~~v~~~e~~~  123 (253)
                      ..+|+|||||.+|+-+|..+.+. | .+|+|+.++.
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            46899999999999999998887 5 4899999863

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.95  E-value=0.011  Score=57.18  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||||..|+-+|..+.+.|. +|+++.+..
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            589999999999999999999986 799988753

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00092  Score=58.28  Aligned_cols=32  Identities=41%  Similarity=0.637  Sum_probs=30.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      .+|.+|||||.+||+||.+.+..|.+|.++|-
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            48999999999999999999999999999996

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.90  E-value=0.002  Score=57.67  Aligned_cols=40  Identities=15%  Similarity=0.032  Sum_probs=37.5

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      |+.++-|..|.++.+......+...+|.+++.|+||+|+|
T Consensus       407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG  446 (659)
T KOG1346|consen  407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVG  446 (659)
T ss_pred             CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEec
Confidence            7999999999999998888889999999999999999987

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.85  E-value=0.01  Score=59.48  Aligned_cols=34  Identities=32%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-CC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-GV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g~-~v~~~e~~~  123 (253)
                      ..+|+|||||.+|+-+|..+.+. |. +|+|++++.
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            46899999999999999998886 85 899999863

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.73  E-value=0.0023  Score=50.22  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=30.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .|+|||||..|.++|..|+++|.+|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.71  E-value=0.0013  Score=58.84  Aligned_cols=33  Identities=27%  Similarity=0.579  Sum_probs=27.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhH--------------cCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDK--------------RGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~--------------~g~~v~~~e~~~  123 (253)
                      ..++||||||+|..+|-+|+.              .-++|+++|+.+
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d  265 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD  265 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence            579999999999999999875              246888888764

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.65  E-value=0.0031  Score=50.73  Aligned_cols=32  Identities=28%  Similarity=0.520  Sum_probs=28.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .|.|||+|..|...|..++..|++|+++|.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            38999999999999999999999999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.58  E-value=0.014  Score=55.38  Aligned_cols=52  Identities=12%  Similarity=0.103  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhc--CCcEEEcCeEEEEEEEe-CCeEE---E-EeCcc--ceeecCEEEEcCC
Q 047483          202 RPLADSLLAQT--SMVSIVRPCWISNLQPF-NGMWH---L-SENVK--LRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~--~gv~i~~~t~V~~i~~~-~~~~~---v-~~~~~--~~~~ad~VV~AtG  253 (253)
                      ..++..|.++.  .+++|+.++.++++..+ ++.+.   + ...++  ..+.|+.||+|||
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  186 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG  186 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence            44555555433  27999999999999875 44432   2 11233  3578999999998

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.49  E-value=0.012  Score=52.58  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=30.6

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ++.++.+++|+++......+.+  .++ .+.+|.+|+|+|
T Consensus        67 ~i~~~~~~~v~~id~~~~~v~~--~~g-~~~yd~LvlatG  103 (415)
T COG0446          67 GIDVRTGTEVTSIDPENKVVLL--DDG-EIEYDYLVLATG  103 (415)
T ss_pred             CCEEeeCCEEEEecCCCCEEEE--CCC-cccccEEEEcCC
Confidence            5899999999999887776554  343 899999999998

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.47  E-value=0.025  Score=50.67  Aligned_cols=53  Identities=17%  Similarity=0.219  Sum_probs=38.1

Q ss_pred             hHHHHHHHHhh-----cCCcEEEcCeEEEEEEEeCCe-EEEEe-----CccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQ-----TSMVSIVRPCWISNLQPFNGM-WHLSE-----NVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~-----~~gv~i~~~t~V~~i~~~~~~-~~v~~-----~~~~~~~ad~VV~AtG  253 (253)
                      +.++.+.|.++     .+.+.++.+++|.+++..+++ +.+..     ....+++.|.||+|||
T Consensus       274 i~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATG  337 (436)
T COG3486         274 IEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATG  337 (436)
T ss_pred             HHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecc
Confidence            45555554443     235899999999999988766 66552     2335789999999998

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.46  E-value=0.0036  Score=50.63  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=26.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..||.+|..|+++|++|+.+|.+.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            69999999999999999999999999999874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.45  E-value=0.0045  Score=57.41  Aligned_cols=32  Identities=38%  Similarity=0.500  Sum_probs=30.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||+|.+|+++|..|.++|++|+++|+.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~   48 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDG   48 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47999999999999999999999999999965

>PRK13984 putative oxidoreductase; Provisional

Probab=96.44  E-value=0.027  Score=53.83  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=25.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC------eEEEEc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV------KSTVFD  120 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~------~v~~~e  120 (253)
                      .+|+|||||.+|+-+|..|.+.+.      +|+++.
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            589999999999999999988753      566653

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.43  E-value=0.041  Score=53.04  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..+|+|||+|..|+-+|..+.+.|. +|+++++..
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3689999999999999999888885 899998753

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.43  E-value=0.0057  Score=47.33  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             EEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      |+|+|+|..|+..|+.|++.|.+|+++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.42  E-value=0.042  Score=55.60  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=28.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ..+|+|||||.+|+-+|..+.+.|. .|+++.+.
T Consensus       571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            4689999999999999999999997 47777764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.31  E-value=0.0053  Score=53.65  Aligned_cols=32  Identities=31%  Similarity=0.581  Sum_probs=30.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            69999999999999999999999999999864

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.29  E-value=0.039  Score=49.73  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +.+|+|+|+|.+|.++...|-..-++|+|+..+.
T Consensus        55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn   88 (491)
T KOG2495|consen   55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN   88 (491)
T ss_pred             CceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence            3689999999999999999988889999999764

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.19  E-value=0.0066  Score=55.93  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|||.|.+|+++|..|.++|++|+++|+..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            58999999999999999999999999999864

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.18  E-value=0.032  Score=53.45  Aligned_cols=38  Identities=11%  Similarity=0.175  Sum_probs=32.8

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++.+.+|+.|.++...  |+++.+..+.+|.+|+|||
T Consensus        73 ~i~L~~~~~v~~idr~~k~--V~t~~g~~~~YDkLilATG  110 (793)
T COG1251          73 GITLYTGEKVIQIDRANKV--VTTDAGRTVSYDKLIIATG  110 (793)
T ss_pred             CcEEEcCCeeEEeccCcce--EEccCCcEeecceeEEecC
Confidence            6999999999999887653  4567788999999999998

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.16  E-value=0.0093  Score=51.63  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|+++|++|+++|++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999864

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.15  E-value=0.016  Score=54.43  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+=.|..|++...+|.+.-|..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            4689999999999999999999999999988753

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.061  Score=48.09  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=35.2

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ..++||+|+|-|+.=+..+-.|+..|.+|+.+||++. -||
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~y-YG~   41 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDY-YGG   41 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCC-CCc
Confidence            3459999999999999999999999999999999864 555

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.97  E-value=0.0067  Score=52.02  Aligned_cols=32  Identities=34%  Similarity=0.559  Sum_probs=27.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-------CeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-------VKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-------~~v~~~e~~  122 (253)
                      .+|+|||+|..||++|+.+.+.+       .+|+|++-.
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr   42 (342)
T KOG3923|consen    4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR   42 (342)
T ss_pred             ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence            68999999999999999888843       689998754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.96  E-value=0.011  Score=49.40  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +++|||+|-.|...|..|.+.|++|+++|++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            69999999999999999999999999999964

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.95  E-value=0.014  Score=50.55  Aligned_cols=33  Identities=33%  Similarity=0.565  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|++.|++|+++|..+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            379999999999999999999999999999864

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.87  E-value=0.011  Score=50.99  Aligned_cols=32  Identities=22%  Similarity=0.446  Sum_probs=30.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|...|..|+++|++|+++|++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            69999999999999999999999999999864

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.87  E-value=0.017  Score=50.84  Aligned_cols=33  Identities=18%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..++.+|++|+++|..+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=95.86  E-value=0.047  Score=49.86  Aligned_cols=40  Identities=10%  Similarity=-0.124  Sum_probs=31.3

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEE-eCcc--ceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLS-ENVK--LRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~-~~~~--~~~~ad~VV~AtG  253 (253)
                      |++++++++|++++.+++.+... ..++  ..++||.||+|+|
T Consensus       273 Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtG  315 (422)
T PRK05329        273 GGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATG  315 (422)
T ss_pred             CCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCC
Confidence            69999999999999877765432 3222  4589999999998

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.85  E-value=0.013  Score=50.60  Aligned_cols=33  Identities=24%  Similarity=0.470  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|+++|++|+++|.+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            469999999999999999999999999999863

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.85  E-value=0.016  Score=50.79  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|...|..|++.|++|+++.++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            579999999999999999999999999999863

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.80  E-value=0.038  Score=50.37  Aligned_cols=40  Identities=5%  Similarity=0.052  Sum_probs=32.2

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCc-cceee--cCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENV-KLRGQ--FDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~-~~~~~--ad~VV~AtG  253 (253)
                      +++++.+++|++|+.++..+.+...+ +..+.  +|+||+|||
T Consensus        58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG  100 (427)
T TIGR03385        58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPG  100 (427)
T ss_pred             CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCC
Confidence            58999999999998877777775432 34677  999999998

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.76  E-value=0.013  Score=42.60  Aligned_cols=32  Identities=31%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            68999999999999999999999999999976

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.72  E-value=0.017  Score=46.69  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=29.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|.++.-+|+.|++.|.+|+++=|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            3789999999999999999999999999998864

...

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.71  E-value=0.13  Score=48.87  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=28.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      ..+|+|||+|..|+-+|..+.+.| .+|+|+.+..
T Consensus       267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~  301 (564)
T PRK12771        267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT  301 (564)
T ss_pred             CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            367999999999999999888888 5788888753

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.66  E-value=0.018  Score=52.95  Aligned_cols=33  Identities=36%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            579999999999999999999999999999863

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.66  E-value=0.022  Score=46.79  Aligned_cols=32  Identities=31%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|||||.+|..-+..|.+.|.+|+|+...
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            58999999999999999999999999999875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.65  E-value=0.021  Score=49.48  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|++.|++|+++|++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.62  E-value=0.018  Score=49.90  Aligned_cols=33  Identities=24%  Similarity=0.535  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.23  Score=43.36  Aligned_cols=33  Identities=33%  Similarity=0.413  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||-+.+--|+.|.+-+.+|+++=|++
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~  176 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD  176 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc
Confidence            599999999999999999999999999999874

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.58  E-value=0.026  Score=44.37  Aligned_cols=31  Identities=35%  Similarity=0.374  Sum_probs=29.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      .+|+|||||-.|..-|..|.+.|.+|+|+..
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            6899999999999999999999999999964

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.51  E-value=0.027  Score=46.19  Aligned_cols=32  Identities=31%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            68999999999999999999999999999874

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.50  E-value=0.02  Score=51.14  Aligned_cols=32  Identities=25%  Similarity=0.459  Sum_probs=30.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..||..|..|++.|++|+.+|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            68999999999999999999999999999864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.50  E-value=0.021  Score=49.88  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||+|..|...|..|++.|.+|+++.+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            47999999999999999999999999999986

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.48  E-value=0.025  Score=49.31  Aligned_cols=33  Identities=24%  Similarity=0.482  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|++.|++|+++|++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999753

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.47  E-value=0.027  Score=44.63  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            689999999999999999999999999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.47  E-value=0.02  Score=49.28  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|+++|++|+++|.++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            369999999999999999999999999999764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.47  E-value=0.019  Score=49.80  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      +|+|||+|..|...|..|++.|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            599999999999999999999999999998

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.46  E-value=0.022  Score=51.93  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||.|..|+.+|..|+++|++|+++|++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.41  E-value=0.24  Score=46.09  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=29.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      ..+|+|||||..|+-+|..+.+.| .+|+++|..+
T Consensus       283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~  317 (485)
T TIGR01317       283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP  317 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            368999999999999988888877 5799999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.38  E-value=0.029  Score=49.34  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|++.|++|+++++..
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999853

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.37  E-value=0.023  Score=49.17  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=29.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +|+|||+|..|...|..|++.|.+|+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5999999999999999999999999999984

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.36  E-value=0.034  Score=42.41  Aligned_cols=33  Identities=33%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVK-STVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~  123 (253)
                      .+++|||+|-+|-++++.|.+.|.+ |+|+.|..
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            6899999999999999999999986 99999863

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.27  E-value=0.024  Score=50.11  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||+|..|...|..|+++|++|+++++.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            36999999999999999999999999999985

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.23  E-value=0.036  Score=45.35  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      .+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            689999999999999999999998 69999986

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.19  E-value=0.029  Score=50.25  Aligned_cols=48  Identities=19%  Similarity=0.306  Sum_probs=41.8

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccccc
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMI  135 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~  135 (253)
                      .+.++||+|||-|..=..+|.+.++.|.+|+=+|+++. -||.|....+
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~y-YGg~waSfSm   52 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEY-YGGNWASFSM   52 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccc-cCCcccceee
Confidence            45569999999999999999999999999999999964 8888876544

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.16  E-value=0.049  Score=48.01  Aligned_cols=94  Identities=12%  Similarity=0.106  Sum_probs=62.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +.+++|||||..++.+|--++-.|.++.++=|....                       +...++.              
T Consensus       189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv-----------------------LR~FD~~--------------  231 (478)
T KOG0405|consen  189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV-----------------------LRGFDEM--------------  231 (478)
T ss_pred             CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh-----------------------hcchhHH--------------
Confidence            368999999999999998888888888888775320                       0000000              


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHH-HHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLA-DSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDV  247 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~  247 (253)
                                                     +++.+ +.|..  .|++++.++.++.+.+.+++ ..+.++.+....+|.
T Consensus       232 -------------------------------i~~~v~~~~~~--~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~  278 (478)
T KOG0405|consen  232 -------------------------------ISDLVTEHLEG--RGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDT  278 (478)
T ss_pred             -------------------------------HHHHHHHHhhh--cceeecccccceeeeecCCCceEEEEeccccccccE
Confidence                                           12222 22222  26999999999999988766 334445544556999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      |+.|+|
T Consensus       279 llwAiG  284 (478)
T KOG0405|consen  279 LLWAIG  284 (478)
T ss_pred             EEEEec
Confidence            999987

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.07  E-value=0.11  Score=46.78  Aligned_cols=39  Identities=18%  Similarity=0.122  Sum_probs=33.8

Q ss_pred             CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          213 SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       213 ~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .|+-+..+.+|..|...+..+++  ++|.+|.+|..++|||
T Consensus       270 GGvAvl~G~kvvkid~~d~~V~L--nDG~~I~YdkcLIATG  308 (659)
T KOG1346|consen  270 GGVAVLRGRKVVKIDEEDKKVIL--NDGTTIGYDKCLIATG  308 (659)
T ss_pred             CceEEEeccceEEeecccCeEEe--cCCcEeehhheeeecC
Confidence            37899999999999888776654  6788999999999998

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.04  E-value=0.046  Score=43.46  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.0

Q ss_pred             CCcEEEECcCH-HHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGM-AGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~-~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            47899999996 6999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.91  E-value=0.032  Score=50.75  Aligned_cols=32  Identities=31%  Similarity=0.413  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|+.+|..|+++|++|+++|++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            58999999999999999999999999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.89  E-value=0.052  Score=41.25  Aligned_cols=33  Identities=39%  Similarity=0.476  Sum_probs=29.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            579999999999999999999997 899999863

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.86  E-value=0.046  Score=49.08  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+|+|||+|.+|+.+|..|...|.+|+++++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            367999999999999999999999999999985

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.84  E-value=0.059  Score=39.52  Aligned_cols=31  Identities=35%  Similarity=0.430  Sum_probs=27.9

Q ss_pred             EEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      |+|+|.|..|...+..|.+.+.+|+++|++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            6899999999999999999888999999974

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.84  E-value=0.045  Score=47.86  Aligned_cols=32  Identities=31%  Similarity=0.521  Sum_probs=29.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      +|.|||+|..|.++|+.|+.+|  .+|.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            5999999999999999999999  5899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.77  E-value=0.056  Score=47.19  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|.++|..|++.|++|+++++..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            479999999999999999999999999999864

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.76  E-value=0.048  Score=47.65  Aligned_cols=33  Identities=21%  Similarity=0.494  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|.|||+|..|..+|+.|+.+|+ +|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            369999999999999999999886 899999853

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.65  E-value=0.049  Score=47.88  Aligned_cols=32  Identities=22%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|...|..|++.|.+|+++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            58999999999999999999999999999853

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.59  E-value=0.054  Score=47.36  Aligned_cols=32  Identities=25%  Similarity=0.486  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|...|..|++.|++|++++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999863

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.57  E-value=0.062  Score=50.22  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|+++|++|+++|+..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.55  E-value=0.066  Score=42.17  Aligned_cols=33  Identities=39%  Similarity=0.535  Sum_probs=28.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||-|..|...|..|.++|++|.++++..
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            379999999999999999999999999999863

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.54  E-value=0.052  Score=46.70  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|.+.|..|.++|++|++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999863

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.50  E-value=0.063  Score=50.14  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            369999999999999999999999999999864

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.40  E-value=0.069  Score=50.00  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|+++|++|+++|+..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~   40 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA   40 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PRK04148 hypothetical protein; Provisional

Probab=94.40  E-value=0.05  Score=41.50  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .++++||.| .|...|..|++.|++|+.+|.++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence            579999999 99999999999999999999875

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.36  E-value=0.033  Score=47.16  Aligned_cols=30  Identities=27%  Similarity=0.586  Sum_probs=25.9

Q ss_pred             EEEECcCHHHHHHHHHHhHc--CCeEEEEcCC
Q 047483           93 VGIIGGGMAGLACALSLDKR--GVKSTVFDTG  122 (253)
Q Consensus        93 v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~  122 (253)
                      .+|||||++|.+||-.|+..  ..+|+++-..
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitas   33 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS   33 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence            68999999999999999985  5688888764

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.34  E-value=0.072  Score=48.42  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=31.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|+|+|+|+.|+.+|..|...|.+|+++|..+
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4689999999999999999999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.29  E-value=0.074  Score=49.66  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=31.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.13  E-value=0.088  Score=46.68  Aligned_cols=33  Identities=39%  Similarity=0.511  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            689999999999999999999997 899999864

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.08  E-value=0.12  Score=45.59  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~  124 (253)
                      .+|+|||+|..|..+|+.|+..|+ +|+|+|.++.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            589999999999999999999996 9999998653

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.03  E-value=0.095  Score=46.48  Aligned_cols=33  Identities=45%  Similarity=0.532  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            689999999999999999999998 999999863

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.02  E-value=0.1  Score=44.63  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      ..|+|||.|-.|..+|..|++.| -+++|+|.+.
T Consensus        31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            68999999999999999999999 5899999864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.01  E-value=0.069  Score=52.14  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..++..|++|+++|...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.00  E-value=0.12  Score=39.75  Aligned_cols=32  Identities=34%  Similarity=0.570  Sum_probs=28.8

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|+|||+ |..|.++|+.|...++  ++.++|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            6999999 9999999999999864  799999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.96  E-value=0.098  Score=45.57  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=29.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|+.|+..|+ +|.++|.+.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            479999999999999999999875 999999854

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.94  E-value=0.052  Score=47.03  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      -+|+|||||.+|.-+|.-+...|.+|+|+|.+
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n  200 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLN  200 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence            68999999999999999999999999999987

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.92  E-value=0.12  Score=42.39  Aligned_cols=33  Identities=39%  Similarity=0.523  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            689999999999999999999997 899999863

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.92  E-value=0.11  Score=45.01  Aligned_cols=33  Identities=39%  Similarity=0.487  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-+|-++|+.|++.|. +|+|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            579999999999999999999997 799999863

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.90  E-value=0.095  Score=43.73  Aligned_cols=32  Identities=34%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC---eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV---KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~---~v~~~e~~  122 (253)
                      .+|+|+|+|-+|..+|..|.+.|.   +|.|+++.
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            589999999999999999999997   59999986

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=93.88  E-value=0.076  Score=51.82  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..++.+|++|+++|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.86  E-value=0.079  Score=47.91  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=27.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|+.+|..++. |++|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            58999999999999988875 99999999864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.82  E-value=0.13  Score=42.09  Aligned_cols=33  Identities=30%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|.|-.|..+|..|.+.|.+|+++|.+.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999999753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.78  E-value=0.11  Score=41.51  Aligned_cols=32  Identities=34%  Similarity=0.473  Sum_probs=29.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      +|+|||+|-.|...|..|++.|. +++|+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999998 599999864

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.77  E-value=0.091  Score=45.38  Aligned_cols=32  Identities=34%  Similarity=0.543  Sum_probs=29.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            38899999999999999999999999999864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.75  E-value=0.095  Score=48.59  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      .+|+|||.|..|+.+|..|+++  |++|+.+|.+.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            3699999999999999999998  58899999864

>PLN02712 arogenate dehydrogenase

Probab=93.74  E-value=0.27  Score=47.66  Aligned_cols=32  Identities=25%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|.|||.|..|-+.|..|.+.|++|+++++.
T Consensus        53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~   84 (667)
T PLN02712         53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS   84 (667)
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57999999999999999999999999999985

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.71  E-value=0.13  Score=39.32  Aligned_cols=32  Identities=38%  Similarity=0.483  Sum_probs=29.3

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      +|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            48999999999999999999997 799999864

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=93.68  E-value=0.23  Score=46.09  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             cCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe--EEEEeCc----cceeecCEEEEcC
Q 047483          197 GVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM--WHLSENV----KLRGQFDVVVIAH  252 (253)
Q Consensus       197 ~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~--~~v~~~~----~~~~~ad~VV~At  252 (253)
                      ...+++.+.++|.+...  |++|+++++|++|..+++.  +.+..++    +..+.||.||.+.
T Consensus       227 ~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~  290 (492)
T TIGR02733       227 LHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANL  290 (492)
T ss_pred             ecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECC
Confidence            34568888888877653  7899999999999887664  3332222    1478999999875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=93.63  E-value=0.18  Score=35.11  Aligned_cols=31  Identities=29%  Similarity=0.391  Sum_probs=28.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc-CCeEEEEcC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR-GVKSTVFDT  121 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~  121 (253)
                      .+++|+|.|.+|..++..|.+. +.+|.++++
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            6799999999999999999998 689999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.54  E-value=0.14  Score=44.62  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=31.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||.|.+|..++..|.+.|.+|+++++..
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.53  E-value=0.12  Score=47.95  Aligned_cols=32  Identities=19%  Similarity=0.061  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|+|.|-+|.++|..|.++|.+|++.|.+
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            57999999999999999999999999999964

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=93.52  E-value=0.1  Score=45.40  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             EEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           93 VGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      |.|||+|..|..+|+.|+.+|+ +|+++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999876 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.45  E-value=0.12  Score=47.38  Aligned_cols=33  Identities=33%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|-+|+++|..|++.|++|++.|+..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            468999999999999999999999999999753

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.42  E-value=0.15  Score=47.61  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=29.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|+|.|.+|++++..|.+.|.+|++.|..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999999964

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.40  E-value=0.13  Score=46.25  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=31.1

Q ss_pred             CCCcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           89 SDPHVGIIG-GGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        89 ~~~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ....|+||| .|..|-++|..|.++|+.|+++++.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            446799999 8999999999999999999999985

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=93.40  E-value=0.1  Score=51.17  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|+.++..|++|+++|...
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            469999999999999999999999999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.38  E-value=0.15  Score=42.14  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            689999999999999999999997 599999863

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.37  E-value=0.13  Score=44.87  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=29.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      .|+|||+|-+|.++|+.|+..|  .+++++|++.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            5899999999999999999998  4899999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.30  E-value=0.12  Score=39.67  Aligned_cols=31  Identities=29%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             EEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++|+|+|..+..++..+...|++|+|+|.++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            5799999999999999999999999999874

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.30  E-value=0.14  Score=42.28  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=29.2

Q ss_pred             cEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.||| +|..|.++|..|++.|++|+++.++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            589997 79999999999999999999998864

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.27  E-value=0.13  Score=47.55  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|+|.|.+|+++|..|.+.|++|++.|++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            479999999999999999999999999999753

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.24  E-value=0.17  Score=44.31  Aligned_cols=33  Identities=30%  Similarity=0.614  Sum_probs=29.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||+|-.|.++|+.|+..|.  ++.|+|.+.
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            589999999999999999998875  799999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.21  E-value=0.16  Score=44.00  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...++|||.|-+|..+|..|...|.+|+++++..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.20  E-value=0.11  Score=43.14  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=31.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ..|.|||+|..|...|.-.+..|++|.+++++..
T Consensus        12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            6799999999999999999999999999998753

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.16  E-value=0.16  Score=47.45  Aligned_cols=34  Identities=35%  Similarity=0.473  Sum_probs=31.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|+|+|.+|+.++..+...|.+|+++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.15  E-value=0.19  Score=40.62  Aligned_cols=32  Identities=22%  Similarity=0.453  Sum_probs=29.5

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..++|+|| |..|..+|..|++.|.+|+++.|+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999997 999999999999999999999875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.14  E-value=0.14  Score=44.48  Aligned_cols=32  Identities=34%  Similarity=0.452  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|...|..|+++|++|++++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999864

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.10  E-value=0.18  Score=42.48  Aligned_cols=33  Identities=33%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            689999999999999999999996 899999864

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.09  E-value=0.14  Score=46.10  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~  122 (253)
                      .+|+|||+|-.|..+|+.|+++| .+|+|.+|.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            47999999999999999999998 899999996

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.05  E-value=0.23  Score=43.65  Aligned_cols=33  Identities=24%  Similarity=0.492  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||+|-.|.++|+.|+..|+  ++.|+|.+.
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            589999999999999999999987  899999854

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.04  E-value=0.18  Score=45.75  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ....|+|||.|..|..+|..|...|.+|+++|..+
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            34689999999999999999999999999999764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.03  E-value=0.19  Score=42.52  Aligned_cols=33  Identities=30%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            689999999999999999999996 899999753

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.03  E-value=0.17  Score=46.47  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|.|-+|+++|..|+++|++|+++|...
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~   38 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL   38 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            479999999999999999999999999999753

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.00  E-value=0.15  Score=44.65  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|+|+|..|...|+.|++.|..|+++=|..
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            69999999999999999999998888887754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.99  E-value=0.19  Score=43.84  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||.|..|.+.|..|.+.|.  +|+++++..
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            479999999999999999999985  899999863

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=92.95  E-value=0.071  Score=47.49  Aligned_cols=42  Identities=29%  Similarity=0.439  Sum_probs=33.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCCCCCCCCcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      ..+-|||+|++||++|..|-+.    |.++.|+|.-+ ..||.+-+.
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelp-l~GGSlDG~   68 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELP-LAGGSLDGA   68 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCc-ccCCCCCCC
Confidence            4578999999999999999874    68999999864 467655443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.90  E-value=0.13  Score=50.15  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHh-HcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLD-KRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~-~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..++ ..|++|+++|...
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999999 8899999999853

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=92.86  E-value=0.23  Score=38.26  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      .+++|||+|..|...|..|.+.| .+|++++++.
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            57999999999999999999986 7899999863

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.81  E-value=0.21  Score=41.62  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            689999999999999999999997 899998753

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.76  E-value=0.17  Score=46.08  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||-|.+|.++|..|.++|.+|+++|...
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            469999999999999999999999999999753

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.74  E-value=0.2  Score=42.79  Aligned_cols=32  Identities=34%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..++|+|+|-+|.++|+.|++.|.+|+++++.
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57999999999999999999999999999885

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=92.73  E-value=0.2  Score=39.44  Aligned_cols=35  Identities=29%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ....++|+|=|..|-.+|..|+..|.+|+|.|.++
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            34679999999999999999999999999999875

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=92.71  E-value=0.16  Score=47.13  Aligned_cols=33  Identities=30%  Similarity=0.569  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|..+|..|+++|++|+++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~   34 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY   34 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.66  E-value=0.12  Score=45.70  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...||+|||||-+|..+|+.|+--=..|+++|=.+
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~  387 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  387 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence            44799999999999999999987656799999754

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.64  E-value=0.15  Score=44.53  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||||..|-..|+.++..|++|+++|.+.
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            479999999999999999999889999999863

>PRK08328 hypothetical protein; Provisional

Probab=92.61  E-value=0.23  Score=41.53  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=29.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            689999999999999999999996 799998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
3kkj_A	336	X-Ray Structure Of P. Syringae Q888a4 Oxidoreductas		4e-05

>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At Resolution 2.5a, Northeast Structural Genomics Consortium Target Psr10 Length = 336

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
           + IIG G+AGL+ A +L   G +  +FD      G               D  AQ+FT  
Sbjct: 5   IAIIGTGIAGLSAAQALTAAGHQVHLFDKSR---GSGGRXSSKRSDAGALDXGAQYFTAR 61
Query: 153 DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNG 200
           D RF   V  W  +G V  W  ++      G+ +P P    +++G  G
Sbjct: 62  DRRFATAVKQWQAQGHVAEWTPLLYNFH-AGRLSPSPDEQVRWVGKPG 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	2e-24
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	8e-14
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-11
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	4e-11
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-10
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-10
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-09
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	4e-09
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	4e-09
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-08
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-08
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	4e-08
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	9e-08
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-07
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	3e-07
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	3e-07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	4e-07
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	6e-07
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	6e-07
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	7e-07
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	8e-07
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	2e-06
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	2e-06
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	2e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	4e-06
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	4e-06
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	6e-06
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	6e-06
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	6e-06
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	7e-06
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	8e-06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	8e-06
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	3e-05
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	3e-05
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	4e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	1e-04
1e3o_C	160	Octamer-binding transcription factor 1; transcript	1e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	2e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	2e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	2e-04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	2e-04
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-04
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	3e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	3e-04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	3e-04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	4e-04
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	8e-04

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 69.0 bits (167), Expect = 8e-14
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 10/165 (6%)

Query: 91  PHVGIIGGGMAGLACALSLDKRGVKS---TVFDTGNHGLGGRMGTR-MIGPQPLIFDHAA 146
             V I+G GM G  CA  L ++        V+D      GGRM T           D  A
Sbjct: 2   AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA-DDSGGRMTTACSPHNPQCTADLGA 60

Query: 147 QFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLAD 206
           Q+ T       +    + E         +   +E              ++   G+  +  
Sbjct: 61  QYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEG----MVMKEGDCNFVAPQGISSIIK 116

Query: 207 SLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIA 251
             L ++    +     ++ +   +  W +S+      QFD++V+ 
Sbjct: 117 HYLKESGA-EVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLT 160

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 21/128 (16%)

Query: 85  APVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDH 144
            P ++  +V ++GGG++GLA A  L  RG  + + ++    LGG +GT  +     + + 
Sbjct: 11  MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR-LGGAVGTHALA--GYLVEQ 67

Query: 145 AAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQ-FTPFPSSPPKYIGVNG-MR 202
               F   +     L                   L + G+     P++  +Y+   G +R
Sbjct: 68  GPNSFLDREPATRALAA----------------ALNLEGRIRAADPAAKRRYVYTRGRLR 111

Query: 203 PLADSLLA 210
            +  S  A
Sbjct: 112 SVPASPPA 119

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 86  PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHA 145
             S+  HV I+G GMAGL+ A  L   G + TV +  +   GGR+ T          +  
Sbjct: 29  ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE-ASERPGGRVRTYRNEEAGWYANLG 87

Query: 146 AQFFTVNDSRFHELVD 161
                       E + 
Sbjct: 88  PMRLPEKHRIVREYIR 103

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 87  VSSDPHVGIIGGGMAGLACALSLDKRGVKS-TVFDTGNHGLGGRMGTRMIGPQPLIFDHA 145
           +S D  + IIG G AGLA  + L++ G    T+ +     +GG+  +     +   ++  
Sbjct: 3   ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILE-RTDHVGGKCHSPNYHGRR--YEMG 59

Query: 146 AQFFTVNDSRFHELVD 161
           A     +     E++D
Sbjct: 60  AIMGVPSYDTIQEIMD 75

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147
           SS   V +IG G++GLA A  L   G+  TVF+      GG++ +       LI+D  A 
Sbjct: 11  SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK-AGGKLRSVSQD--GLIWDEGAN 67

Query: 148 FFTVNDSRFHELVD 161
             T ++     L+D
Sbjct: 68  TMTESEGDVTFLID 81

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 6/123 (4%)

Query: 89  SDPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA 146
           S   + I+GGG+ GLA A   ++    +  T+ + G   LGG++ T          +   
Sbjct: 3   SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER-LGGKVATYRED--GFTIERGP 59

Query: 147 QFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLAD 206
             +        +L++       +         +   G   P P      I  + +     
Sbjct: 60  DSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTD-LDLFRQ 118

Query: 207 SLL 209
           + L
Sbjct: 119 TTL 121

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 91  PHVGIIGGGMAGLACALSLDKRGVKS-TVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFF 149
           P + IIG G  GL  A+ L + G K+  +++  +   GG   + +       +D      
Sbjct: 10  PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDT-PGGLSRSFLD-ENGFTWDLGGHVI 67

Query: 150 TVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKY-IGVNGMRPLADSL 208
             +   F +++D  ++   V   E  +    V G++ P+P     + +     +   D L
Sbjct: 68  FSHYQYFDDVMDWAVQGWNVLQRESWVW---VRGRWVPYPFQNNIHRLPEQDRKRCLDEL 124

Query: 209 LAQTSMVSIVRP 220
           +   +      P
Sbjct: 125 VRSHARTYTEPP 136

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 55.4 bits (132), Expect = 4e-09
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 8/79 (10%)

Query: 91  PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQP--------LIF 142
             + I+G G+AGL     L + G   T+ +   + +GGR+ T                  
Sbjct: 45  KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYA 104

Query: 143 DHAAQFFTVNDSRFHELVD 161
           +  A            L+D
Sbjct: 105 EAGAMRLPSFHPLTLALID 123

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 14/127 (11%)

Query: 91  PHVGIIGGGMAGLACALSLDKR------GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDH 144
            HV IIGGG+ GLA A  ++K        ++ T+ +     +GG++ T        I + 
Sbjct: 6   KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPR-VGGKIQTVKKD--GYIIER 62

Query: 145 AAQFFTVNDSRFHELVD--GWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR 202
               F        +LV   G LE  LV         + V     P P      I    + 
Sbjct: 63  GPDSFLERKKSAPQLVKDLG-LEHLLVNN-ATGQSYVLVNRTLHPMPKGAVMGIPTK-IA 119

Query: 203 PLADSLL 209
           P   + L
Sbjct: 120 PFVSTGL 126

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 53.0 bits (126), Expect = 3e-08
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 92  HVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT 150
            V +IG G  GL  A  L++  G    + D+     GG   T +  P+  ++D       
Sbjct: 12  DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET-PGGLASTDVT-PEGFLYDVGGHVIF 69

Query: 151 VNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSP 192
            +   F + +D  L +         I  +   GQ+ P+P   
Sbjct: 70  SHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQN 111

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 52.1 bits (124), Expect = 4e-08
 Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           I+G G AG   A  L   G +  + D   H +GG           LI  +    F  N  
Sbjct: 34  IVGAGFAGSVLAERLASSGQRVLIVDRRPH-IGGNAYDCYDDAGVLIHPYGPHIFHTNSK 92

Query: 155 RFHELVDGWLE--RGLVRPWEGVIGELEVGGQFTPFP 189
              E +  + E      R          V GQ  P P
Sbjct: 93  DVFEYLSRFTEWRPYQHRVL------ASVDGQLLPIP 123

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 51.2 bits (122), Expect = 9e-08
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 14/122 (11%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKS--TVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFF 149
            V ++GGG++GLA +  L +        + ++    LGG + + + GP   IF+   +  
Sbjct: 4   TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSER-LGGWIRS-VRGPNGAIFELGPRGI 61

Query: 150 TVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNG-MRPLADSL 208
               +     +    E GL         + EV       P++  +++ V G +  L   L
Sbjct: 62  RPAGALGARTLLLVSELGL---------DSEVLPVRGDHPAAQNRFLYVGGALHALPTGL 112

Query: 209 LA 210
             
Sbjct: 113 RG 114

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147
           S+   V ++GGG++G+A A  L   G+   V +     +GGR  T          D    
Sbjct: 2   SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLE-ARDRVGGRTYTLRNQKVK-YVDLGGS 59

Query: 148 FFTVNDSRFHELVD 161
           +     +R   L  
Sbjct: 60  YVGPTQNRILRLAK 73

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFTVND 153
           I+G G +G      L ++G +  + D  +H +GG     R      ++  +    F  ++
Sbjct: 8   IVGAGFSGAVIGRQLAEKGHQVHIIDQRDH-IGGNSYDARDSETNVMVHVYGPHIFHTDN 66

Query: 154 SRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFP---SSPPKYIGVNGMRPLADSLLA 210
                 V+   E               V GQ    P    +  ++         A +L+A
Sbjct: 67  ETVWNYVNKHAEMMPYVNRVKAT----VNGQVFSLPINLHTINQFFSKTCSPDEARALIA 122

Query: 211 QTSMVSIVRP 220
           +    +I  P
Sbjct: 123 EKGDSTIADP 132

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 84  TAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFD 143
                    V +IGGG  GL     L   G K+ + +     +GGR  +  I   P  ++
Sbjct: 33  DTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLE-ARDRIGGRSWSSNIDGYP--YE 89

Query: 144 HAAQFFTVNDSRFHELVDG-WLERGLVRPWEGVIGELEVGGQFTPFPSSPP 193
               +   + S     +    +   L   +    G      +  P  S+  
Sbjct: 90  MGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYM 140

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVF 119
            +   + ++GG ++GL  AL L   GV   V+
Sbjct: 3   PTTDRIAVVGGSISGLTAALMLRDAGVDVDVY 34

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           I+G G+ G  CA  L K   K  V +  NH +GG   T        I  + A  F  ND 
Sbjct: 6   IVGSGLFGAVCANELKKLNKKVLVIEKRNH-IGGNAYTEDCE-GIQIHKYGAHIFHTNDK 63

Query: 155 RFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFP 189
              + V+  +E          I       +    P
Sbjct: 64  YIWDYVNDLVEFNRFTNSPLAI----YKDKLFNLP 94

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKS-TVFDTGNHGLGGRMGTRMIGPQPLIFDHAA 146
           +  P V ++G GM+G++ A  L + G+    + +  +H +GGRM            +  A
Sbjct: 2   TVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH-IGGRMHKTNFAGIN--VELGA 58

Query: 147 QFFT 150
            +  
Sbjct: 59  NWVE 62

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 5/147 (3%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147
           +    V I+G G +GLA A +L K G+   V +     +GGR  T  I       +   Q
Sbjct: 3   TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIE-ARDRVGGRTWTDTIDGAV--LEIGGQ 59

Query: 148 FFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKY--IGVNGMRPLA 205
           + + + +    L+D    +   R  EG    +   G+ T +              M  L 
Sbjct: 60  WVSPDQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLI 119

Query: 206 DSLLAQTSMVSIVRPCWISNLQPFNGM 232
           D +    + +    P      +  + +
Sbjct: 120 DEMDDLAAQIGAEEPWAHPLARDLDTV 146

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 83  FTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF 142
               V     V ++GGG AGL  A  L K G K TV +      GGR+ T   G +    
Sbjct: 4   LIGKVKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLE-ARTRPGGRVWTARGGSEETDL 62

Query: 143 DHAAQFFTVNDSRFHEL 159
               Q  T ++  F+ +
Sbjct: 63  SGETQKCTFSEGHFYNV 79

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 48.7 bits (115), Expect = 8e-07
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 5/116 (4%)

Query: 47  NNANARKPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACA 106
               A   +        +    R  L   F   +     P      V IIG G++GLA A
Sbjct: 65  QQLEAPYNSDTVLVHRVHSYLERHGLI-NFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAA 123

Query: 107 LSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT-VNDSRFHELVD 161
             L   G+  T+ +  +  +GGR+ T   G      D  A   T +  +    +  
Sbjct: 124 RQLQSFGMDVTLLEARDR-VGGRVATFRKGNYV--ADLGAMVVTGLGGNPMAVVSK 176

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 77  AQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVF 119
                             +IG G+ GL+ A++L + G+   V+
Sbjct: 10  HHHSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVY 52

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 89  SDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
           SD +V IIGGG  GL  A  L + G+  +V++
Sbjct: 25  SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYE 56

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
             ++G G+ GL     L + G +  V +  +  +GGR   
Sbjct: 3   AVVVGAGLGGLLAGAFLARNGHEIIVLE-KSAMIGGRFTN 41

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFT- 150
             ++GGG +GL  A  L   G K  + + G   LGGR  +        L  +    +   
Sbjct: 4   AIVVGGGFSGLKAARDLTNAGKKVLLLE-GGERLGGRAYSRESRNVPGLRVEIGGAYLHR 62

Query: 151 VNDSRFHELVD 161
            +  R    +D
Sbjct: 63  KHHPRLAAELD 73

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
            V I+G G +G   A  L + G    + DT    +GG +
Sbjct: 391 SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK-IGGHL 428

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVF 119
                  + GGG AGL  A++L + G    + 
Sbjct: 9   GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLH 40

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 85  APVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
               SD  V ++G G +GL  A +L  RG    + + G   LGGR+
Sbjct: 386 RAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRD-LGGRV 430

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKS-TVF 119
           S    + I G G+ GL+CAL+L + G+   T+ 
Sbjct: 2   SEPIDILIAGAGIGGLSCALALHQAGIGKVTLL 34

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 85  APVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
            P     ++ ++G G AGLA A++   RG + T+FD  +  +GG
Sbjct: 368 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE-IGG 410

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
              +IG G+ GL  A  L K G +  VF+      GGR   
Sbjct: 2   KTVVIGAGLGGLLSAARLSKAGHEVEVFE-RLPITGGRFTN 41

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 86  PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
              +   V IIG G+AGL  A +L + G++  +       +GGR+ T
Sbjct: 4   VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT 50

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 45.7 bits (107), Expect = 8e-06
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 86  PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHA 145
           P      V IIG G++GLA A  L   G+  T+ +  +  +GGR+ T   G      D  
Sbjct: 274 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVATFRKGNYV--ADLG 330

Query: 146 AQFFT-VNDSRFHELVD 161
           A   T +  +    +  
Sbjct: 331 AMVVTGLGGNPMAVVSK 347

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Length = 676

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 42/236 (17%), Positives = 70/236 (29%), Gaps = 38/236 (16%)

Query: 51  ARKPTPRNRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLD 110
            ++     +R    G   +             F    SS     IIGGG+A    +L+L 
Sbjct: 236 QKRKGFGRKREMLCGVMEQ---TLPLPCSAPWFNRTGSSKREAAIIGGGIASALLSLALL 292

Query: 111 KRGVKSTVFDTGNHGLGGRMGTRMIGPQPLI--------------FDHAAQFFT------ 150
           +RG + T++        G  G R     PL+              F  A +F+       
Sbjct: 293 RRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVKF 352

Query: 151 ------VNDSRFHELVDGWLERGLVRPWEGVIGEL---EVGGQFTPFPSSPPKYIGVNG- 200
                 V    + E     + + L       +          Q T   ++        G 
Sbjct: 353 DHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGG 412

Query: 201 ---MRPLADSLL--AQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIA 251
                 L  ++L  AQ   + I     + N    +  W L+     +    VVV+A
Sbjct: 413 WLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLA 468

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 86  PVSSDPHVGIIGGGMAGLACALSLDKRGVKS-TVFDTGNHGLGG 128
           P +    + ++G G A ++CA  L + G    T+F+     +GG
Sbjct: 183 PEAYSAKIALLGAGPASISCASFLARLGYSDITIFE-KQEYVGG 225

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
           VG+IG G AGLA A  L  +G +  V+D     +GG
Sbjct: 125 VGVIGAGPAGLAAAEELRAKGYEVHVYDR-YDRMGG 159

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 95  IIGGGMAGLACALSL-DKRGVKSTVFDTGNHGLGGRMGTRMIGPQP-LIFDHAAQFFTVN 152
           ++G G  GL  A  +  +   +  V +   H +GG   +         +  + A  F  +
Sbjct: 12  VVGSGFFGLTIAERVATQLDKRVLVLERRPH-IGGNAYSEAEPQTGIEVHKYGAHLFHTS 70

Query: 153 DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFP 189
           + R  + V  + +    R     +      GQ   FP
Sbjct: 71  NKRVWDYVRQFTDFTDYRHRVFAM----HNGQAYQFP 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 32/230 (13%), Positives = 53/230 (23%), Gaps = 92/230 (40%)

Query: 33  LTSTIKATSSQPKPN------------NANARKPTPRNRRRSSYGSSRRSALKKTFAQEQ 80
           L S IK    QP               N N +     N  R       R AL +      
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLEL----- 147

Query: 81  VTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPL 140
                     P   ++  G+ G          G K+ V                      
Sbjct: 148 ---------RPAKNVLIDGVLG--S-------G-KTWV---------------------- 166

Query: 141 IFDHAAQFFTVNDSRFHELVDG---WLERGLVRPWEGVIGELE-----VGGQFTPFPSSP 192
               A         +    +D    WL        E V+  L+     +   +T      
Sbjct: 167 ----ALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 193 PKY-IGVNGM----------RPLADSLLAQTSMVSIVRPCWISN-LQPFN 230
               + ++ +          +P  + LL       ++     +     FN
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLL-------VLLNVQNAKAWNAFN 263

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
            S   V ++G G+ GL+ AL L ++G    +  
Sbjct: 4   HSQKRVVVLGSGVIGLSSALILARKGYSVHILA 36

>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 4   TFISSASS---SFLILQPLKPPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPTPRNRR 60
           T IS   +   SF  +  LKP     L+ A+   S+  + SS    N+      + R ++
Sbjct: 45  TTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKK 104

Query: 61  RSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVK 115
           R+S  ++ R AL+K+F + Q     P S D         +  +A  L+++K  ++
Sbjct: 105 RTSIETNIRVALEKSFMENQ----KPTSED---------ITLIAEQLNMEKEVIR 146

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 7/143 (4%)

Query: 27  LSKAKTLTSTIKATS--SQPKPNNANARKPTPRNRRRSSYGSSRRSALKKTFAQEQVT-F 83
           +S   T TST  +    +     +  +      +     +   R S + +          
Sbjct: 1   MSATSTATSTSASQLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDL 60

Query: 84  TAPVSSDPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLI 141
                SD  V I+G G +GL+ A  + K    +K  + ++     GG      +    ++
Sbjct: 61  DKFAVSD--VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVM 118

Query: 142 FDHAAQFFTVNDSRFHELVDGWL 164
              A  F    +  + +  D  +
Sbjct: 119 RKPAHLFLQELEIPYEDEGDYVV 141

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 14/151 (9%)

Query: 1   MMATFISSASSSFLILQPLKPPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPTPRNRR 60
           M  + +   S   L+   LK    +     +      K           +A   +P    
Sbjct: 1   MSPSVLEPQSVPTLVNVGLKAVGRNDAPVERDARGLSKPLLELMPTLGTDAFTFSPIRES 60

Query: 61  RSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACA--LSLDKRGVKSTV 118
             S     R+  ++ FA       A   +D  + I+G G  GL+ A  LS  +  ++ T+
Sbjct: 61  TVS-----RAMTRRYFAD----LDAHAETD--IVIVGAGSCGLSAAYVLSTLRPDLRITI 109

Query: 119 FDTGNHGLGGRMGTRMIGPQPLIFDHAAQFF 149
            + G    GG           ++    A  F
Sbjct: 110 VEAGVAP-GGGAWLGGQLFSAMVMRKPADVF 139

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 89  SDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147
           ++  V ++G G AGL+ A  + K   V+  + +      GG      +    ++   A  
Sbjct: 38  AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHL 97

Query: 148 FFTVNDSRFHELVDGW 163
           F       + E     
Sbjct: 98  FLDEIGVAYDEQDTYV 113

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 84  TAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
               S      +IG G+ G+  A  +++ G+K    +     +GG
Sbjct: 3   NRAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEA-GEDVGG 46

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGN--HGLGGRMG-TRMIGPQ 138
           V ++GGG  GLA A  + +RG +  V +     +  GG  G  R    Q
Sbjct: 7   VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQ 55

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Length = 689

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 39/218 (17%)

Query: 73  KKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
           +              +    + IIGGG+     AL+L +RG   T++        G  G 
Sbjct: 247 QIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQGASGN 306

Query: 133 RMIGPQPLI--------------FDHAAQFFT---------------VNDSRFHELVDGW 163
           R     PL+              F  A + +                V+   F +   G 
Sbjct: 307 RQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGVSQLAFDDKSRGK 366

Query: 164 LERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGV-----NGMRP--LADSLL--AQTSM 214
           +E+ L   W     E     Q +        + G+       + P  L  +L+  AQ + 
Sbjct: 367 IEKMLHTQWPVEFAEAMSREQLSELAGLDCAHDGIHYPAGGWLCPSDLTHALMMLAQQNG 426

Query: 215 VSIVRPCWISNLQPFNGMWHLS-ENVKLRGQFDVVVIA 251
           ++      +  L+  +  W L+    +       V++A
Sbjct: 427 MTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILA 464

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG--GRMGTRMIGPQ 138
             +IGGG+ G A A  L K    + +F++G  G          M+G  
Sbjct: 20  AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAG-MLGAH 66

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFD 120
           I G G+ G   A  L ++G +  V +
Sbjct: 11  INGCGIGGAMLAYLLGRQGHRVVVVE 36

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 81  VTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
           V        +  V ++G G +GL     L + G    V +T    +GG
Sbjct: 7   VDSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG-DVGG 53

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 84  TAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
               ++   V ++G G+AGL        +G+    F+  + G+GG
Sbjct: 15  ATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS-GVGG 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.79
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.76
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.68
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.64
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.64
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.62
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.62
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.61
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.57
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.57
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.57
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.57
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.56
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.56
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.56
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.56
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.55
3dme_A	369	Conserved exported protein; structural genomics, P	99.55
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.55
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.54
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.54
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.54
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.54
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.53
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.53
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.53
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.53
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.53
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.52
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.52
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.51
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.51
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.51
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.5
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.5
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.5
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.49
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.49
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.48
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.48
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.48
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.48
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.48
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.47
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.47
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.46
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.46
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.46
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.46
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.45
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.44
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.42
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.42
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.42
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.41
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.41
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.41
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.4
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.4
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.39
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.39
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.39
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.39
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.39
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.39
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.37
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.37
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.36
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.36
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.36
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.36
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.36
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.35
3atr_A	453	Conserved archaeal protein; saturating double bond	99.35
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.35
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.35
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.35
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.35
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.34
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.34
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.33
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.33
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.33
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.32
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.32
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.32
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.32
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.32
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.32
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.31
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.3
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.3
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.29
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.28
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.28
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.27
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.26
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.24
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.23
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.23
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.22
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.21
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.18
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.18
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.18
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.17
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.17
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.17
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.16
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.16
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.16
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.16
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.15
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.14
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.14
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.13
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.13
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.12
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.11
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.11
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.1
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.09
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.09
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.08
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.08
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.08
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.07
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.07
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.06
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.06
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.05
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.03
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.03
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.02
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.02
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.01
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.01
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.01
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.0
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.0
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.0
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.99
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.99
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.99
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.99
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.98
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.98
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.97
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.97
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.95
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.94
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.93
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.92
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.91
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.91
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.91
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.9
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.9
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.9
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.89
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.88
4dna_A	463	Probable glutathione reductase; structural genomic	98.88
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.87
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.87
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.86
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.86
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.86
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.85
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.85
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.84
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.84
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.84
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.83
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.83
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.82
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.82
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.82
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.81
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.8
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.79
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.79
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.78
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.76
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.75
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.75
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.74
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.73
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.73
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.73
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.71
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.7
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.69
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.69
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.69
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.68
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.68
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.66
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.66
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.64
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.64
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.64
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.64
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.63
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.62
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.62
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.62
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.61
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.61
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.6
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.6
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.6
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.59
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.59
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.59
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.59
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.58
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.58
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.58
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.57
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.57
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.56
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.56
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.55
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.55
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.54
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.54
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.54
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.52
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.51
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.5
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.5
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.47
4dna_A	463	Probable glutathione reductase; structural genomic	98.46
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.46
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.45
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.44
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.38
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.38
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.38
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.38
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.38
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.37
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.36
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.34
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.33
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.31
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.29
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.28
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.27
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.25
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.24
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.21
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.18
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.17
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.16
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.15
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.14
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.14
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.13
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.12
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.04
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.03
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.02
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.97
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.92
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.92
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.89
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.88
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.87
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.84
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.81
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.78
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.72
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.72
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.71
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.7
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.69
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.69
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.63
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.62
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.6
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.59
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.57
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.57
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.5
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.49
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.41
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.27
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.15
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.07
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.92
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.89
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.85
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.85
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.82
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.79
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.79
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.64
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.61
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.51
4fk1_A	304	Putative thioredoxin reductase; structural genomic	96.47
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.36
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.24
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.2
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.18
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.97
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.9
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.87
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.87
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.83
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.83
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.82
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.81
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.8
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.74
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.73
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.68
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.65
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.63
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.62
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.62
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.61
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.56
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.54
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.54
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.5
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.47
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.44
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.44
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.42
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.41
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.39
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	95.38
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.37
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.35
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.32
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.31
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.31
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.31
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.3
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.23
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.22
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.19
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.17
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.14
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.09
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.07
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.05
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.04
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.04
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.01
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.97
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.92
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.89
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.88
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.88
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.86
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.82
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.8
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.79
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.79
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.76
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.75
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.75
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.73
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.73
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.72
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.68
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.67
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.6
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.6
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.58
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.57
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.55
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.52
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.51
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.48
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.46
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.41
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.41
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	94.4
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.4
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.39
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.37
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.37
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.37
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.37
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.34
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.29
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.26
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.26
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.22
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.2
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.19
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.18
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.13
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.12
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.1
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.09
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.09
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.06
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.04
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.01
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.98
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.97
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.96
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.93
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.93
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.91
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.9
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.85
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.85
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.83
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.81
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.81
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.76
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.76
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.75
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.71
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.7
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.68
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	93.67
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	93.63
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.61
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.61
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.61
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.59
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.57
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.56
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.52
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.52
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.52
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.49
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	93.47
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.45
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.42
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.41
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	93.4
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.39
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.37
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.36
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.33
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	93.29
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.28
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.25
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.21
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.21
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.11
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.11
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.09
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.08
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.0
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.99
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.99
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.92
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.9
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.86
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.81
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	92.78
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	92.75
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	92.74
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.7
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	92.69
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	92.65
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	92.62
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	92.57
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	92.52
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	92.5
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	92.46
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	92.46
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.45
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.37
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.31
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	92.28
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	92.26
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.23
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	92.21
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.2
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.13
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	92.04
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	92.01
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.0
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	91.98
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	91.97
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	91.95
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	91.93
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	91.82
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.7
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	91.6
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	91.47
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	91.45
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	91.41
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	91.32
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	91.28
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	91.23

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.76  E-value=7.2e-18  Score=147.28  Aligned_cols=154  Identities=22%  Similarity=0.388  Sum_probs=115.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCCCCCCCCccccccC-CCccccccccceeccCch---hHHHHHHhh
Q 047483           91 PHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGNHGLGGRMGTRMIG-PQPLIFDHAAQFFTVNDS---RFHELVDGW  163 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~~~~gg~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~  163 (253)
                      .||+|||||++|+++|+.|++   .|++|+||||+. ..||++.+.... .....++.+..++.....   .+..+++.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~-~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~   80 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD-DSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL   80 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS-SSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC-CCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence            589999999999999999999   999999999985 688888765442 234567788887765544   455666666


Q ss_pred             hhccccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcccee
Q 047483          164 LERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRG  243 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~  243 (253)
                      ...+....|........       .......|....++..+++.+.++. +++|+++++|++|++++++|.|.++++..+
T Consensus        81 ~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~l~~~l~~~~-g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~  152 (342)
T 3qj4_A           81 LAYGVLRPLSSPIEGMV-------MKEGDCNFVAPQGISSIIKHYLKES-GAEVYFRHRVTQINLRDDKWEVSKQTGSPE  152 (342)
T ss_dssp             HHTTSCEECCSCEETCC-------C--CCEEEECTTCTTHHHHHHHHHH-TCEEESSCCEEEEEECSSSEEEEESSSCCE
T ss_pred             HhCCCeecCchhhccee-------ccCCccceecCCCHHHHHHHHHHhc-CCEEEeCCEEEEEEEcCCEEEEEECCCCEE
Confidence            66666666654321110       0011134555667889999888876 589999999999999988999988777778


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      +||.||+|+.
T Consensus       153 ~ad~vV~A~p  162 (342)
T 3qj4_A          153 QFDLIVLTMP  162 (342)
T ss_dssp             EESEEEECSC
T ss_pred             EcCEEEECCC
Confidence            9999999973

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.68  E-value=6.8e-16  Score=139.63  Aligned_cols=70  Identities=29%  Similarity=0.462  Sum_probs=53.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC------CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG------VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g------~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +||+|||||++||++|+.|+++|      ++|+|||+++ ..||+..+...  .+..++.|.+.+....+.+.++++++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~-~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~l~~~l   81 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP-RVGGKIQTVKK--DGYIIERGPDSFLERKKSAPQLVKDL   81 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS-SSCTTCCEECC--TTCCEESSCCCEETTCTHHHHHHHHT
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC-CCCceEEEecc--CCEEeccChhhhhhCCHHHHHHHHHc
Confidence            69999999999999999999999      9999999985 58988776544  35566777766554455555555543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.64  E-value=3e-15  Score=136.14  Aligned_cols=72  Identities=25%  Similarity=0.524  Sum_probs=56.7

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ..+||+|||||++||++|+.|+++|++|+|||++. ..||+..+....  +..+|.|.+++......+.++++++
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~-~~GGr~~t~~~~--g~~~~~g~~~~~~~~~~~~~~~~~~   86 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA-RLGGAVGTHALA--GYLVEQGPNSFLDREPATRALAAAL   86 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS-SSBTTCCEEEET--TEEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC-CCCceeeeeccC--CeeeecChhhhhhhhHHHHHHHHHc
Confidence            34799999999999999999999999999999985 599998876553  5677888777765555555555543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.64  E-value=1.2e-15  Score=137.10  Aligned_cols=150  Identities=19%  Similarity=0.244  Sum_probs=84.6

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc----ccc-cCCCccccccccceeccCchhHHHHHHh
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG----TRM-IGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +..+||+|||||++|+++|+.|+++|++|+|||++.. .|+.+.    +.. +......   ...++......+...+..
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~-~g~~~~~sGgg~~n~t~~~~~---~~~~~~~~~~~~~~~l~~  100 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA-PGEKIRISGGGRCNFTNIHAS---PRNFLSGNPHFCKSALAR  100 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCHHHHHSGGGTCEEEETTCS---GGGEEESSTTTTHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC-CCceeEEcCCCceeccCCCCC---HHHHhhcCHHHHHHHHHh
Confidence            3458999999999999999999999999999999853 554321    100 0000000   011121111122222222


Q ss_pred             hhhcccccccccccc---ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEe
Q 047483          163 WLERGLVRPWEGVIG---ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSE  237 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~  237 (253)
                      +...... .|....+   .....+..++          ......+.+.|.+.+.  +++|+++++|++|+.++++|.|.+
T Consensus       101 ~~~~~~~-~~~~~~Gi~~~~~~~g~~~~----------~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~  169 (417)
T 3v76_A          101 YRPQDFV-ALVERHGIGWHEKTLGQLFC----------DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTT  169 (417)
T ss_dssp             SCHHHHH-HHHHHTTCCEEECSTTEEEE----------SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEE
T ss_pred             cCHHHHH-HHHHHcCCCcEEeeCCEEee----------CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEE
Confidence            1111111 1110000   0111222222          1122445444444332  799999999999999888899887


Q ss_pred             CccceeecCEEEEcCC
Q 047483          238 NVKLRGQFDVVVIAHN  253 (253)
Q Consensus       238 ~~~~~~~ad~VV~AtG  253 (253)
                      .++ .++||.||+|||
T Consensus       170 ~~g-~i~ad~VIlAtG  184 (417)
T 3v76_A          170 SAG-TVDAASLVVASG  184 (417)
T ss_dssp             TTE-EEEESEEEECCC
T ss_pred             CCc-EEEeeEEEECCC
Confidence            775 899999999998

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.62  E-value=8.1e-15  Score=135.00  Aligned_cols=161  Identities=14%  Similarity=0.108  Sum_probs=102.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc-
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL-  168 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  168 (253)
                      .+||+|||||++||++|+.|+++|++|+|||++. ..||+..+.... .+..+|.|.+++......+.++++++.-... 
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~-~~GGr~~t~~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~   81 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD-RVGGRTYTLRNQ-KVKYVDLGGSYVGPTQNRILRLAKELGLETYK   81 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSS-SSBTTCCEECCT-TTSCEESSCCEECTTCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCCceeecccC-CCcccccCceEecCCcHHHHHHHHHcCCccee
Confidence            3799999999999999999999999999999985 589988665442 2456677776665444444444443210000 


Q ss_pred             -------ccccccc-------cc------------------------------------------c--------------
Q 047483          169 -------VRPWEGV-------IG------------------------------------------E--------------  178 (253)
Q Consensus       169 -------~~~~~~~-------~~------------------------------------------~--------------  178 (253)
                             ...+.+.       ..                                          .              
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~  161 (520)
T 1s3e_A           82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESA  161 (520)
T ss_dssp             CCCSSEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHH
T ss_pred             cccCCceEEEECCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCHHH
Confidence                   0000000       00                                          0              


Q ss_pred             ---eee--CCeeeeCC-------------------------CCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEE
Q 047483          179 ---LEV--GGQFTPFP-------------------------SSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQP  228 (253)
Q Consensus       179 ---~~~--~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~  228 (253)
                         +..  .+.+...+                         .....+....++..+.+.|.+.. +++|++|++|++|+.
T Consensus       162 ~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l-g~~i~~~~~V~~i~~  240 (520)
T 1s3e_A          162 KQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL-GDRVKLERPVIYIDQ  240 (520)
T ss_dssp             HHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHH-GGGEESSCCEEEEEC
T ss_pred             HHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHHc-CCcEEcCCeeEEEEE
Confidence               000  00000000                         00011223356788888888776 478999999999998


Q ss_pred             eCCeEEEEeCccceeecCEEEEcCC
Q 047483          229 FNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       229 ~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ++++|.|.+.++..+.||+||+|.+
T Consensus       241 ~~~~v~v~~~~g~~~~ad~VI~a~p  265 (520)
T 1s3e_A          241 TRENVLVETLNHEMYEAKYVISAIP  265 (520)
T ss_dssp             SSSSEEEEETTSCEEEESEEEECSC
T ss_pred             CCCeEEEEECCCeEEEeCEEEECCC
Confidence            8888988888877899999999974

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.62  E-value=1.5e-14  Score=131.49  Aligned_cols=54  Identities=15%  Similarity=0.145  Sum_probs=45.9

Q ss_pred             CChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          199 NGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .++..+.+.|.+....++|+++++|++|++++++|.|++.++ .++||.||+|++
T Consensus       233 ~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p  286 (475)
T 3lov_A          233 TGLESLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIP  286 (475)
T ss_dssp             TCHHHHHHHHHHHCSSCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSC
T ss_pred             ChHHHHHHHHHhhccCCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCC
Confidence            456778888888765469999999999999999999987776 899999999975

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.61  E-value=3.8e-15  Score=136.37  Aligned_cols=71  Identities=24%  Similarity=0.391  Sum_probs=58.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483           91 PHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +||+|||||++||++|+.|+++ |++|+|||+++ .+||++.+.. ...++.+|.|.+++....+.+.+++.++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~-~~GG~~~T~~-~~~G~~~D~G~h~~~~~~~~v~~l~~e~   82 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE-TPGGLASTDV-TPEGFLYDVGGHVIFSHYKYFDDCLDEA   82 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS-SCCGGGCEEE-CTTSCEEESSCCCCCCCBHHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC-CCcCCeeeEE-ecCCEEEEeCceEecCCCHHHHHHHHHh
Confidence            7999999999999999999985 99999999986 5999887642 2236788999988876677666666553

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.57  E-value=1.2e-14  Score=130.16  Aligned_cols=148  Identities=21%  Similarity=0.259  Sum_probs=81.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc----ccc-cCCCccccccccceeccCchhHHHHHHhhh
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG----TRM-IGPQPLIFDHAAQFFTVNDSRFHELVDGWL  164 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      .+||+|||||++|+++|+.|+++|.+|+|||++.. .|+.+.    +.. +.......   ..++......+...+..+.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~-~g~~~~~sggg~cn~~~~~~~~---~~~~~~~~~~~~~~l~~~~   79 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK-IGRKILMSGGGFCNFTNLEVTP---AHYLSQNPHFVKSALARYT   79 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCHHHHHGGGGTCCCEESSCCG---GGEECSCTTSTHHHHHHSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCC-CchhcEEcCCCeEEccCCccCH---HHhccCCHHHHHHHHHhCC
Confidence            48999999999999999999999999999999853 443221    000 00000000   1122111111111111110


Q ss_pred             hcccccccccccc-ce--eeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEe----CCeEEE
Q 047483          165 ERGLVRPWEGVIG-EL--EVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPF----NGMWHL  235 (253)
Q Consensus       165 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~----~~~~~v  235 (253)
                      ..... .|....+ .+  ...+.+++..          ....+.+.|.+.+.  |++|+++++|+++..+    ++.|.|
T Consensus        80 ~~~~~-~~~~~~Gi~~~~~~~g~~~p~~----------~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v  148 (401)
T 2gqf_A           80 NWDFI-SLVAEQGITYHEKELGQLFCDE----------GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVL  148 (401)
T ss_dssp             HHHHH-HHHHHTTCCEEECSTTEEEETT----------CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEE
T ss_pred             HHHHH-HHHHhCCCceEECcCCEEccCC----------CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEE
Confidence            00000 1110000 00  1122333321          12444444443322  6999999999999876    566888


Q ss_pred             EeCccceeecCEEEEcCC
Q 047483          236 SENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       236 ~~~~~~~~~ad~VV~AtG  253 (253)
                      .+.++ .++||.||+|||
T Consensus       149 ~~~~g-~i~ad~VVlAtG  165 (401)
T 2gqf_A          149 QVNST-QWQCKNLIVATG  165 (401)
T ss_dssp             EETTE-EEEESEEEECCC
T ss_pred             EECCC-EEECCEEEECCC
Confidence            77665 899999999998

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.57  E-value=3.5e-14  Score=128.98  Aligned_cols=70  Identities=24%  Similarity=0.366  Sum_probs=53.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCCCCCCCCccccccCCCccccccccceeccC---chhHHHHHHh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN---DSRFHELVDG  162 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  162 (253)
                      .||+|||||++||++|++|+++|.  +|+|||++. ..||+..+.... .+..++.|.+.+...   ...+.+++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~-~~GG~~~t~~~~-~g~~~d~G~~~~~~~~~~~~~~~~l~~~   77 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE-RLGGWIRSVRGP-NGAIFELGPRGIRPAGALGARTLLLVSE   77 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS-SSBTTCCEEECT-TSCEEESSCCCBCCCHHHHHHHHHHHHH
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC-CCCCceEEEecc-CCeEEEeCCCcccCCCcccHHHHHHHHH
Confidence            699999999999999999999999  999999985 589988764432 356777777776433   2334444444

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.57  E-value=3.7e-14  Score=134.77  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=43.6

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...++..|.+.+  .|++|+++++|++|+.++++|.|.+.++++++||.||+|+|
T Consensus       416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG  470 (676)
T 3ps9_A          416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANG  470 (676)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCC
Confidence            355666655533  27999999999999999999988887777899999999998

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.57  E-value=4.2e-15  Score=135.95  Aligned_cols=54  Identities=11%  Similarity=0.040  Sum_probs=45.1

Q ss_pred             CChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEEEcC
Q 047483          199 NGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~At  252 (253)
                      .++..+.+.|++.+.  |++|++|++|++|+.++++++ |+++++.++.||.||.+.
T Consensus       218 GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a  274 (501)
T 4dgk_A          218 GGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNA  274 (501)
T ss_dssp             THHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECC
T ss_pred             CCCcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECC
Confidence            457788888776543  799999999999999999876 668888899999999875

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.56  E-value=4.9e-14  Score=123.87  Aligned_cols=52  Identities=13%  Similarity=0.157  Sum_probs=41.9

Q ss_pred             hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+.  |++|+++++|++|+++++.|.|.+.++ .++||.||+|+|
T Consensus       153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G  206 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAG  206 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCG
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCC
Confidence            3556555555432  799999999999999988898877665 899999999997

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.56  E-value=3.5e-14  Score=135.24  Aligned_cols=53  Identities=13%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccc-eeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKL-RGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~-~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+  .|++|+++++|++|+.++++|.|.+.++. .++||.||+|+|
T Consensus       411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG  466 (689)
T 3pvc_A          411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATG  466 (689)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCC
Confidence            355666655533  27999999999999998888988877766 899999999998

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.56  E-value=1.7e-14  Score=125.45  Aligned_cols=125  Identities=18%  Similarity=0.275  Sum_probs=82.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|+++|++|+|||+.. ..||.|... ++.  ..+......                     .
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~-~~gg~~~~~-~~~--~~~~~~~~~---------------------~   58 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA-SPGGAWQHA-WHS--LHLFSPAGW---------------------S   58 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSS-SSSGGGGGS-CTT--CBCSSCGGG---------------------S
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC-CCCCcccCC-CCC--cEecCchhh---------------------h
Confidence            799999999999999999999999999999985 477766431 110  000000000                     0


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV  249 (253)
                      .+           ..++.+.+...+.....+..++..++++. +++++++++|++++.+++.|. |.++++ .+.+|.||
T Consensus        59 ~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV  125 (357)
T 4a9w_A           59 SI-----------PGWPMPASQGPYPARAEVLAYLAQYEQKY-ALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVI  125 (357)
T ss_dssp             CC-----------SSSCCCCCSSSSCBHHHHHHHHHHHHHHT-TCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEE
T ss_pred             hC-----------CCCCCCCCccCCCCHHHHHHHHHHHHHHc-CCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEE
Confidence            00           00111112122222223445555555554 589999999999999999999 877665 99999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|||
T Consensus       126 ~AtG  129 (357)
T 4a9w_A          126 SATG  129 (357)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9998

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.56  E-value=3.3e-14  Score=128.65  Aligned_cols=159  Identities=17%  Similarity=0.189  Sum_probs=85.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHH-HHhhhhc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHEL-VDGWLER  166 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  166 (253)
                      .+||+|||||++||++|+.|++.|.  +|+|||+.. ..||.|.........+........+. ..+..... ...+ ..
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~-~~GG~~~~~~~~~~~~~ip~~~~~~~-~~~~~~g~~~~~~-~~   82 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG-SPGGVWNYTSTLSNKLPVPSTNPILT-TEPIVGPAALPVY-PS   82 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS-SSSTTCSCCSCCCSCCCSSBCCTTCC-CCCBCCSSSCCBC-CC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC-CCCCeecCCCCCCccccccccccccc-ccccccccccCCc-cC
Confidence            4799999999999999999999999  999999975 47776643221110000000000000 00000000 0000 00


Q ss_pred             ccccccccccc-ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc---cc-
Q 047483          167 GLVRPWEGVIG-ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV---KL-  241 (253)
Q Consensus       167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~---~~-  241 (253)
                      ........... ... .-..++++...+.+.....+.++++.+++++ +..|+++++|++|+..++.|.|+..+   +. 
T Consensus        83 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~  160 (447)
T 2gv8_A           83 PLYRDLQTNTPIELM-GYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL-LPFIKLATDVLDIEKKDGSWVVTYKGTKAGSP  160 (447)
T ss_dssp             CCCTTCBCSSCHHHH-SCTTCCCCTTCCSSCBHHHHHHHHHHHHGGG-GGGEECSEEEEEEEEETTEEEEEEEESSTTCC
T ss_pred             chhhhhccCCCHHHh-ccCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-hCeEEeCCEEEEEEeCCCeEEEEEeecCCCCe
Confidence            00000000000 000 0001122222223333223455555566555 47899999999999988889887654   44 


Q ss_pred             --eeecCEEEEcCC
Q 047483          242 --RGQFDVVVIAHN  253 (253)
Q Consensus       242 --~~~ad~VV~AtG  253 (253)
                        ++.+|.||+|||
T Consensus       161 ~~~~~~d~VVvAtG  174 (447)
T 2gv8_A          161 ISKDIFDAVSICNG  174 (447)
T ss_dssp             EEEEEESEEEECCC
T ss_pred             eEEEEeCEEEECCC
Confidence              799999999998

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.55  E-value=6.1e-14  Score=126.22  Aligned_cols=53  Identities=9%  Similarity=-0.115  Sum_probs=42.4

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCe---EEEEEEEeCCeEE-EEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPC---WISNLQPFNGMWH-LSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t---~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+  .|++|++++   +|++|..+++.|. |.+.++.+++||.||+|+|
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG  218 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAG  218 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCC
Confidence            345555555433  279999999   9999999888888 8777766899999999998

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.55  E-value=8e-15  Score=128.15  Aligned_cols=53  Identities=9%  Similarity=-0.075  Sum_probs=40.8

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCe-EEEEeCcc--ceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGM-WHLSENVK--LRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~-~~v~~~~~--~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+  .|++|+++++|++|+.++++ |.|.+.++  ..++||.||+|+|
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G  206 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAG  206 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCG
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCC
Confidence            345555555433  27999999999999988765 88877665  4899999999997

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.55  E-value=7.1e-14  Score=125.23  Aligned_cols=55  Identities=20%  Similarity=0.369  Sum_probs=45.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCcccccccccee
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFF  149 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~  149 (253)
                      ||+|||||++||++|+.|+++|++|+|||++. ..||+..+....  ++.+|.|...+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~-~~GG~~~~~~~~--g~~~d~G~~~~   56 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA-MIGGRFTNLPYK--GFQLSTGALHM   56 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSSEEEET--TEEEESSSCSE
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC-CCCceeEEeccC--CEEEecCCeEE
Confidence            89999999999999999999999999999985 589988765443  55666665433

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.54  E-value=1.2e-14  Score=134.91  Aligned_cols=132  Identities=16%  Similarity=0.157  Sum_probs=90.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|++.|++|+|||++. ..||.|....++  ++..+.....+.....  .++...        
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~-~~GGtw~~~~yp--g~~~dv~s~~y~~~f~--~~~~~~--------   88 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS-GVGGVWYWNRYP--GARCDVESIDYSYSFS--PELEQE--------   88 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCTHHHHCCCT--TCBCSSCTTTSSCCSC--HHHHHH--------
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC-CCCCccccCCCC--CceeCCCchhcccccc--cccccC--------
Confidence            799999999999999999999999999999985 588877644443  2333333222221100  000010        


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeCC--eEEEEeCccceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFNG--MWHLSENVKLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~~--~~~v~~~~~~~~~ad~  247 (253)
                                        ..|...+.....+..+++.++++.. ..+++++++|++++.+++  .|.|++.++.+++||+
T Consensus        89 ------------------~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~  150 (549)
T 4ap3_A           89 ------------------WNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARF  150 (549)
T ss_dssp             ------------------CCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEE
T ss_pred             ------------------CCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCE
Confidence                              1122223333345666666666664 138999999999988765  7999888888899999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       151 lV~AtG  156 (549)
T 4ap3_A          151 LVVAAG  156 (549)
T ss_dssp             EEECCC
T ss_pred             EEECcC
Confidence            999998

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.54  E-value=7.2e-15  Score=131.13  Aligned_cols=141  Identities=14%  Similarity=0.111  Sum_probs=80.7

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh------
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG------  162 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  162 (253)
                      ..+||+|||||++||++|+.|+++|++|+|||+... ......       ++.+.          +.-..+++.      
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~-~~~~~~-------~~~l~----------~~~~~~l~~lg~~~~   83 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE-IKPVGA-------AISVW----------PNGVKCMAHLGMGDI   83 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC-C----C-------EEEEC----------HHHHHHHHHTTCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC-CCCcCe-------eEEEC----------HHHHHHHHHCCCHHH
Confidence            348999999999999999999999999999999753 211100       01000          000111111      


Q ss_pred             hhhccccccccccccceeeC-C-eeeeCC--------CCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe
Q 047483          163 WLERGLVRPWEGVIGELEVG-G-QFTPFP--------SSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM  232 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~  232 (253)
                      +...+...  .. ....... + ....++        ......+   ....+.+.|.+....++|+++++|++++.++++
T Consensus        84 ~~~~~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i---~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~  157 (407)
T 3rp8_A           84 METFGGPL--RR-MAYRDFRSGENMTQFSLAPLIERTGSRPCPV---SRAELQREMLDYWGRDSVQFGKRVTRCEEDADG  157 (407)
T ss_dssp             HHHHSCCC--CE-EEEEETTTCCEEEEEECHHHHHHHSSCCEEE---EHHHHHHHHHHHHCGGGEEESCCEEEEEEETTE
T ss_pred             HHhhcCCC--cc-eEEEECCCCCEeEEecchhhhhhcCCceEEE---EHHHHHHHHHHhCCcCEEEECCEEEEEEecCCc
Confidence            10111000  00 0000000 0 000000        0000111   123444555554434789999999999999999


Q ss_pred             EEEEeCccceeecCEEEEcCC
Q 047483          233 WHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       233 ~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      |.+++.++.+++||.||.|||
T Consensus       158 v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A          158 VTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             EEEEETTSCEEEESEEEECCC
T ss_pred             EEEEEcCCCEEeeCEEEECCC
Confidence            999988888999999999998

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.54  E-value=7.7e-15  Score=136.03  Aligned_cols=131  Identities=15%  Similarity=0.226  Sum_probs=89.4

Q ss_pred             CcEEEECcCHHHHHHHHHHh-HcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           91 PHVGIIGGGMAGLACALSLD-KRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~-~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +||+|||||++|+++|+.|+ +.|++|+|||++. ..||.+....++  ++..+.....+.....  .+...        
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~-~~GGtw~~~~yp--g~~~d~~s~~~~~~~~--~~~~~--------   75 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKAD-GPGGTWYWNRYP--GALSDTESHLYRFSFD--RDLLQ--------   75 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS-SSCTHHHHCCCT--TCEEEEEGGGSSCCSC--HHHHH--------
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCC-CCCCcccccCCC--CceecCCcceeeeccc--ccccc--------
Confidence            79999999999999999999 8899999999985 588877554443  2223322222221100  00000        


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCc--EEEcCeEEEEEEEeCC--eEEEEeCccceeec
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMV--SIVRPCWISNLQPFNG--MWHLSENVKLRGQF  245 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv--~i~~~t~V~~i~~~~~--~~~v~~~~~~~~~a  245 (253)
                                        ...|...+.....+..+++..+++.+ +  +++++++|++++.+++  .|.|++.++.+++|
T Consensus        76 ------------------~~~~~~~~~~~~ei~~~l~~~~~~~g-~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~a  136 (540)
T 3gwf_A           76 ------------------ESTWKTTYITQPEILEYLEDVVDRFD-LRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRA  136 (540)
T ss_dssp             ------------------HCCCSBSEEEHHHHHHHHHHHHHHTT-CGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ------------------CCCCcccCCCHHHHHHHHHHHHHHcC-CcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEe
Confidence                              01122222333335666666666654 5  8999999999998865  89998888778999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       137 d~lV~AtG  144 (540)
T 3gwf_A          137 KYVVNAVG  144 (540)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCc
Confidence            99999998

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.54  E-value=1.1e-13  Score=123.22  Aligned_cols=140  Identities=14%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc--
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG--  167 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  167 (253)
                      .+||+|||||++||++|+.|+++|++|+|||+..........+       +.+          .+...+.++.+.-..  
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g-------~~l----------~~~~~~~l~~~g~~~~~   67 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTG-------IVV----------QPELVHYLLEQGVELDS   67 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCE-------EEC----------CHHHHHHHHHTTCCGGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc-------ccc----------ChhHHHHHHHcCCcccc
Confidence            4799999999999999999999999999999975311111100       000          111122232221000  


Q ss_pred             ccccccccccceee-CCee---eeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcccee
Q 047483          168 LVRPWEGVIGELEV-GGQF---TPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRG  243 (253)
Q Consensus       168 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~  243 (253)
                      ....... ...... .+..   .+.+.   ..   .....+.+.|.+..++++|+++++|++++.++++|.+++.++.++
T Consensus        68 ~~~~~~~-~~~~~~~~g~~~~~~~~~~---~~---~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~  140 (397)
T 2vou_A           68 ISVPSSS-MEYVDALTGERVGSVPADW---RF---TSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKA  140 (397)
T ss_dssp             TCBCCCE-EEEEETTTCCEEEEEECCC---CE---EEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccc-eEEEecCCCCccccccCcc---cc---cCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEE
Confidence            0000000 000000 1110   01110   01   112445555656556799999999999999888899988887889


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      +||.||+|||
T Consensus       141 ~ad~vV~AdG  150 (397)
T 2vou_A          141 EANWVIGADG  150 (397)
T ss_dssp             EESEEEECCC
T ss_pred             ECCEEEECCC
Confidence            9999999998

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.53  E-value=1.8e-14  Score=133.58  Aligned_cols=133  Identities=16%  Similarity=0.191  Sum_probs=88.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++|+++|+.|++.|++|+|||++. ..||.|....++.  ..++.....+.....  .+....+      
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~-~~GG~w~~~~~pg--~~~d~~~~~~~~~f~--~~~~~~~------   84 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG-DVGGVWYWNRYPG--ARCDIESIEYCYSFS--EEVLQEW------   84 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCTHHHHCCCTT--CBCSSCTTTSSCCSC--HHHHHHC------
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC-CCCCcccccCCCc--eeecccccccccccC--hhhhhcc------
Confidence            3799999999999999999999999999999985 4888775443332  222222222211100  0000000      


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeC--CeEEEEeCccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFN--GMWHLSENVKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~--~~~~v~~~~~~~~~ad  246 (253)
                                          .+...+.....+.++++.+++++. +.+++++++|++++.++  +.|.|++.++.+++||
T Consensus        85 --------------------~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad  144 (542)
T 1w4x_A           85 --------------------NWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRAR  144 (542)
T ss_dssp             --------------------CCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEE
T ss_pred             --------------------CcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeC
Confidence                                011112222235566666666665 46899999999998875  3799988777789999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|||
T Consensus       145 ~vV~AtG  151 (542)
T 1w4x_A          145 YLIMASG  151 (542)
T ss_dssp             EEEECCC
T ss_pred             EEEECcC
Confidence            9999998

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.53  E-value=3.5e-14  Score=128.65  Aligned_cols=152  Identities=22%  Similarity=0.267  Sum_probs=81.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc----cc-cCCCccccccccceeccCchhHHHHHHhhh
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT----RM-IGPQPLIFDHAAQFFTVNDSRFHELVDGWL  164 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      .+||+|||||++|+++|+.|+++|.+|+||||... .|+....    .. +... ..++.....+......+...+..+.
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~-~g~~~~~sg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  103 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK-LGRKLAISGGGRCNVTNR-LPLDEIVKHIPGNGRFLYSAFSIFN  103 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCHHHHHTGGGTCCCEEC-SCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC-CCceeEEeCCCceeccCc-ccHHHHHHHhccChHHHHHHHHhcC
Confidence            37999999999999999999999999999999753 4432110    00 0000 0000000000000011111111100


Q ss_pred             hcccccccccccc-c--eeeCCeeeeCCCCCCccccCCChHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCe-EEEEeC
Q 047483          165 ERGLVRPWEGVIG-E--LEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT--SMVSIVRPCWISNLQPFNGM-WHLSEN  238 (253)
Q Consensus       165 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~-~~v~~~  238 (253)
                      .. ....|....+ .  ....+.+++...         ....+++.|.+.+  .|++|+++++|++|..+++. |.|.+.
T Consensus       104 ~~-~~~~~~~~~G~~~~~~~~g~~~p~~~---------~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~  173 (447)
T 2i0z_A          104 NE-DIITFFENLGVKLKEEDHGRMFPVSN---------KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ  173 (447)
T ss_dssp             HH-HHHHHHHHTTCCEEECGGGEEEETTC---------CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET
T ss_pred             HH-HHHHHHHhcCCceEEeeCCEEECCCC---------CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEEC
Confidence            00 0001111000 0  011222333221         1244444444432  27999999999999987776 777777


Q ss_pred             ccceeecCEEEEcCC
Q 047483          239 VKLRGQFDVVVIAHN  253 (253)
Q Consensus       239 ~~~~~~ad~VV~AtG  253 (253)
                      ++..++||.||+|||
T Consensus       174 ~G~~i~Ad~VVlAtG  188 (447)
T 2i0z_A          174 TGEVLETNHVVIAVG  188 (447)
T ss_dssp             TCCEEECSCEEECCC
T ss_pred             CCCEEECCEEEECCC
Confidence            766699999999998

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.53  E-value=3.3e-14  Score=127.18  Aligned_cols=54  Identities=19%  Similarity=0.094  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEEEcCC
Q 047483          199 NGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~AtG  253 (253)
                      .++..+.+.|.+.+.  |++|+++++|++|+.++++|. |.++ ++.++||.||+|+|
T Consensus       193 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~  249 (425)
T 3ka7_A          193 GGCKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLG  249 (425)
T ss_dssp             TSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSC
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCC
Confidence            345677777766543  799999999999999988886 5554 67899999999986

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.53  E-value=2.3e-14  Score=126.41  Aligned_cols=52  Identities=12%  Similarity=-0.022  Sum_probs=40.3

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+  .|++|+++++|++|+.+++.|. |.+.++ .++||.||+|+|
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G  202 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATN  202 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCG
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcc
Confidence            345555554433  2799999999999998888887 766654 899999999997

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.53  E-value=7e-14  Score=124.18  Aligned_cols=51  Identities=14%  Similarity=0.044  Sum_probs=39.7

Q ss_pred             HHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          202 RPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..+++.|.+.+  .|++|+++++|++|+.+++.|.+.+++ ++++||.||+|+|
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~-g~i~a~~VV~A~G  205 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDR-GTYRAGKVVLACG  205 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESS-CEEEEEEEEECCG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECC-CEEEcCEEEEcCC
Confidence            44455544432  279999999999999888888886654 5899999999997

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.52  E-value=1e-13  Score=125.14  Aligned_cols=54  Identities=11%  Similarity=0.095  Sum_probs=45.1

Q ss_pred             CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEEEcCC
Q 047483          198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..++..+.+.|++..+ ++|++|++|++|+.++++ |.|.+ +++.++||.||+|++
T Consensus       211 ~gG~~~l~~~l~~~lg-~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p  265 (453)
T 2yg5_A          211 IGGMQQVSIRMAEALG-DDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVP  265 (453)
T ss_dssp             TTCTHHHHHHHHHHHG-GGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSC
T ss_pred             cCChHHHHHHHHHhcC-CcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCC
Confidence            3457888888888764 799999999999998888 88865 567899999999974

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.52  E-value=7.9e-14  Score=127.46  Aligned_cols=66  Identities=23%  Similarity=0.383  Sum_probs=50.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHH
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHEL  159 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      +||+|||||++||++|+.|+++|++|+|||++. .+||+..+....  +..+|.|.+++....+.+.++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~-~~GGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~~  105 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARD-RIGGRSWSSNID--GYPYEMGGTWVHWHQSHVWRE  105 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSS-BSBTTCCEEEET--TEEEECSCCCBCTTSHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCC-CCCCcceecccC--CeeecCCCeEecCccHHHHHH
Confidence            699999999999999999999999999999985 599998765443  445666666554333333333

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.51  E-value=1.7e-13  Score=122.82  Aligned_cols=53  Identities=15%  Similarity=0.134  Sum_probs=43.6

Q ss_pred             CChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          199 NGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .++..+++.++++. + +|+++++|++|+++++++.|++.++.+++||.||+|+|
T Consensus       204 ~g~~~l~~~~~~~~-g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~  256 (431)
T 3k7m_X          204 NGSADLVDAMSQEI-P-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATP  256 (431)
T ss_dssp             TCTHHHHHHHHTTC-S-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSC
T ss_pred             CcHHHHHHHHHhhC-C-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence            34567777776654 4 99999999999988888988887777799999999986

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.51  E-value=4.1e-14  Score=124.79  Aligned_cols=51  Identities=8%  Similarity=-0.030  Sum_probs=39.8

Q ss_pred             HHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          202 RPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..+++.|.+.+  .|++++++++|++|+.+++.|.|.+.++ .++||.||+|+|
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G  216 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASG  216 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCC
Confidence            44555554433  2699999999999998888887776665 899999999997

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.51  E-value=1.6e-13  Score=122.25  Aligned_cols=150  Identities=21%  Similarity=0.240  Sum_probs=83.7

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccc--cccceeccCchhHHHHHHhhhhc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFD--HAAQFFTVNDSRFHELVDGWLER  166 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      ..+||+|||||++||++|+.|+++|++|+|||+... .+.+..+.     .+.+.  .+...+... ..+.++.......
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~-~~~~~~g~-----~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~   97 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND-REARIFGG-----TLDLHKGSGQEAMKKA-GLLQTYYDLALPM   97 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS-TTCCCCSC-----CEECCTTTHHHHHHHT-TCHHHHHHHCBCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC-ccccccCC-----eeeeCCccHHHHHHhc-ChHHHHHHhhccc
Confidence            458999999999999999999999999999999753 32221100     00000  000011000 0001111100000


Q ss_pred             cccccccccccceeeCCee-eeC--CCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcccee
Q 047483          167 GLVRPWEGVIGELEVGGQF-TPF--PSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRG  243 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~  243 (253)
                      ..  .+..      ..+.. ...  +...........-..+.+.|.+...+++|+++++|++++.++++|.+++.++.++
T Consensus        98 ~~--~~~~------~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~  169 (398)
T 2xdo_A           98 GV--NIAD------EKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSE  169 (398)
T ss_dssp             CE--EEEC------SSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCE
T ss_pred             ce--EEEC------CCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEE
Confidence            00  1110      01111 110  0000000000122455666666665678999999999998888899988887789


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      +||.||+|||
T Consensus       170 ~ad~vV~AdG  179 (398)
T 2xdo_A          170 TADLVILANG  179 (398)
T ss_dssp             EESEEEECSC
T ss_pred             ecCEEEECCC
Confidence            9999999998

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.50  E-value=3.1e-13  Score=120.95  Aligned_cols=69  Identities=23%  Similarity=0.401  Sum_probs=50.9

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHH
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELV  160 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ...||+|||||++||++|+.|+++| ++|+|||++. ..||++.+...+  +..+|.|.+++......+.+++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~-~~GG~~~t~~~~--G~~~d~G~~~~~~~~~~~~~l~   74 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD-HVGGKCHSPNYH--GRRYEMGAIMGVPSYDTIQEIM   74 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-CSSTTCCCCEET--TEECCSSCCCBCTTCHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC-CCCCcccccCCC--CcccccCceeecCCcHHHHHHH
Confidence            3479999999999999999999999 9999999985 589988765543  4455666555443333333333

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.50  E-value=3e-14  Score=132.17  Aligned_cols=133  Identities=11%  Similarity=0.132  Sum_probs=89.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++|+++|+.|++.|++|+|||++. ..||.|....++.  ..++.....+...          + .....
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~-~~GGtw~~~~yPg--~~~d~~~~~y~~~----------f-~~~~~   74 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGE-DVGGTWYWNRYPG--CRLDTESYAYGYF----------A-LKGII   74 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCTHHHHCCCTT--CBCSSCHHHHCHH----------H-HTTSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC-CCCCccccCCCCc--eeecCchhhcccc----------c-Ccccc
Confidence            4799999999999999999999999999999985 5888875544442  2222221111100          0 00000


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeC--CeEEEEeCccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFN--GMWHLSENVKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~--~~~~v~~~~~~~~~ad  246 (253)
                      .                 ...+...+.....+..+++.++++.. ..+++++++|++++.++  +.|.|+++++.+++||
T Consensus        75 ~-----------------~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad  137 (545)
T 3uox_A           75 P-----------------EWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCR  137 (545)
T ss_dssp             T-----------------TCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEE
T ss_pred             c-----------------CCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeC
Confidence            0                 01122222233345666666666654 13799999999998764  4799988888889999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       138 ~lV~AtG  144 (545)
T 3uox_A          138 FLISATG  144 (545)
T ss_dssp             EEEECCC
T ss_pred             EEEECcC
Confidence            9999998

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.50  E-value=8.5e-13  Score=120.41  Aligned_cols=57  Identities=11%  Similarity=0.026  Sum_probs=47.1

Q ss_pred             cCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc---ceeecCEEEEcCC
Q 047483          197 GVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK---LRGQFDVVVIAHN  253 (253)
Q Consensus       197 ~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~---~~~~ad~VV~AtG  253 (253)
                      ...++..+.+.|.+..+..+|+++++|++|++++++|.|++.++   ..++||+||+|..
T Consensus       234 ~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p  293 (489)
T 2jae_A          234 PVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIP  293 (489)
T ss_dssp             ETTCTTHHHHHHHHHHCGGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSC
T ss_pred             ecCCHHHHHHHHHHhcCCCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCC
Confidence            34568889999988765468999999999999999998876654   5799999999864

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.49  E-value=7.5e-14  Score=122.87  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+||+||||||+||++|+.|+++|++|+||||.+
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3899999999999999999999999999999975

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.49  E-value=1.4e-13  Score=120.98  Aligned_cols=51  Identities=4%  Similarity=-0.001  Sum_probs=39.9

Q ss_pred             HHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          202 RPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..+++.|.+.+  .|++++++++|++|+.++++|.+.+.++ .++||.||+|+|
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G  201 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAG  201 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCC
Confidence            45555554433  2799999999999998877888876654 699999999997

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.48  E-value=3.4e-13  Score=119.02  Aligned_cols=51  Identities=2%  Similarity=-0.045  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          202 RPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ..+++.|.+.+.  |++++++++|++|+.++++|.+.+++ +.++||.||+|+|
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~~a~~vV~A~G  202 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETAN-GSYTADKLIVSMG  202 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETT-EEEEEEEEEECCG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCC-CEEEeCEEEEecC
Confidence            455555554332  79999999999999887788887655 4899999999997

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.48  E-value=6.9e-13  Score=121.84  Aligned_cols=143  Identities=20%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .++||+|||||++||++|+.|+++|++|+||||... .+.......              +.   ..-.++++.+   ++
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~-~~~~~r~~~--------------l~---~~~~~~l~~l---Gl   68 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE-RTGESRGLG--------------FT---ARTMEVFDQR---GI   68 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC--CCCCCSEE--------------EC---HHHHHHHHTT---TC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC-CCCCCCcce--------------EC---HHHHHHHHHC---CC
Confidence            448999999999999999999999999999999753 221110000              00   0111122211   11


Q ss_pred             ccccccc--ccceeeCCeeeeCCCC---CC--ccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccc
Q 047483          169 VRPWEGV--IGELEVGGQFTPFPSS---PP--KYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKL  241 (253)
Q Consensus       169 ~~~~~~~--~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~  241 (253)
                      ...+...  .......+........   .+  ..+....+..++...+.+. +++|+++++|++++++++++.++..++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~v~~~~~~  147 (500)
T 2qa1_A           69 LPRFGEVETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGL-GADIRRGHEVLSLTDDGAGVTVEVRGPE  147 (500)
T ss_dssp             GGGGCSCCBCCEEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHT-TCEEEETCEEEEEEEETTEEEEEEEETT
T ss_pred             HHHHHhccccccccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHC-CCEEECCcEEEEEEEcCCeEEEEEEcCC
Confidence            1111000  0000000000111000   00  0111112333333333333 6999999999999999998888765543


Q ss_pred             ---eeecCEEEEcCC
Q 047483          242 ---RGQFDVVVIAHN  253 (253)
Q Consensus       242 ---~~~ad~VV~AtG  253 (253)
                         +++||+||.|||
T Consensus       148 g~~~~~a~~vVgADG  162 (500)
T 2qa1_A          148 GKHTLRAAYLVGCDG  162 (500)
T ss_dssp             EEEEEEESEEEECCC
T ss_pred             CCEEEEeCEEEECCC
Confidence               799999999998

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.48  E-value=3.1e-13  Score=126.03  Aligned_cols=141  Identities=19%  Similarity=0.153  Sum_probs=76.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh------h
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG------W  163 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  163 (253)
                      .+||+|||||++||++|+.|+++|++|+|||+... ......       ...+.          ..-.++++.      +
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~-~~~~~r-------~~~l~----------~~s~~~l~~lGl~~~l  110 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE-PVGHDR-------AGALH----------IRTVETLDLRGLLDRF  110 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS-CCCSSS-------CCCBC----------HHHHHHHHTTTCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC-CCCCce-------EEEEC----------HHHHHHHHHcCChHHH
Confidence            48999999999999999999999999999999753 211100       00000          000111111      1


Q ss_pred             hhccccc--c-ccccc-cceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEe
Q 047483          164 LERGLVR--P-WEGVI-GELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSE  237 (253)
Q Consensus       164 ~~~~~~~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~  237 (253)
                      ...+...  . |.... ..++.    ...... ..+........+.+.|.+..  .+++|+++++|++++++++++.++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~  185 (570)
T 3fmw_A          111 LEGTQVAKGLPFAGIFTQGLDF----GLVDTR-HPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTV  185 (570)
T ss_dssp             TTSCCBCSBCCBTTBCTTCCBG----GGSCCS-CCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEE
T ss_pred             HhcCcccCCceeCCcccccccc----cccCCC-CCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEE
Confidence            1111000  0 10000 00000    000000 01111111122333333322  1699999999999999888888776


Q ss_pred             --Ccc-ceeecCEEEEcCC
Q 047483          238 --NVK-LRGQFDVVVIAHN  253 (253)
Q Consensus       238 --~~~-~~~~ad~VV~AtG  253 (253)
                        .++ .+++||+||.|||
T Consensus       186 ~~~~G~~~~~a~~vV~ADG  204 (570)
T 3fmw_A          186 AGPSGPYPVRARYGVGCDG  204 (570)
T ss_dssp             EETTEEEEEEESEEEECSC
T ss_pred             EeCCCcEEEEeCEEEEcCC
Confidence              566 6899999999998

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.48  E-value=4.6e-13  Score=123.24  Aligned_cols=58  Identities=33%  Similarity=0.467  Sum_probs=47.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccccccCCCccccccccceec
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT  150 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      .||+|||||++||++|+.|+++| ++|+|||++. .+||++.+.... .+..+|.|.+++.
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~-riGGr~~t~~~~-~G~~~D~G~~~~~   67 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD-RVGGRLQTVTGY-QGRKYDIGASWHH   67 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSS-SSBTTCCEEECG-GGCEEESSCCEEC
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCC-CCCCceeeeecC-CCcEEecCCeEEe
Confidence            69999999999999999999999 9999999985 599998664331 2455677766654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.47  E-value=1.7e-13  Score=121.42  Aligned_cols=50  Identities=16%  Similarity=0.025  Sum_probs=40.1

Q ss_pred             HHHHHHHhhcCCcEEEcCeEEEEEEEeC-CeEEEEeCccceeecCEEEEcCC
Q 047483          203 PLADSLLAQTSMVSIVRPCWISNLQPFN-GMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       203 ~l~~~l~~~~~gv~i~~~t~V~~i~~~~-~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+.+.|.+..+ ..|+++++|++++..+ +.+.+++.++.+++||+||.|||
T Consensus       113 ~L~~~L~~~~~-~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG  163 (412)
T 4hb9_A          113 ELKEILNKGLA-NTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADG  163 (412)
T ss_dssp             HHHHHHHTTCT-TTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHhhcc-ceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCC
Confidence            34444555554 5799999999998764 45888889999999999999998

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.47  E-value=1.5e-13  Score=122.03  Aligned_cols=33  Identities=39%  Similarity=0.539  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhH-cC-CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDK-RG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~-~g-~~v~~~e~~~  123 (253)
                      +||+|||||++|+++|++|++ +| ++|+|||++.
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            799999999999999999999 99 9999999975

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.46  E-value=6.8e-14  Score=124.41  Aligned_cols=147  Identities=18%  Similarity=0.116  Sum_probs=79.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCcccccc-ccceeccCchhHHHHHHhhhhcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDH-AAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +||+|||||++|+++|+.|+++|++|+|||+... ....       ..+..+.. +...+... .    +.+.+..... 
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~-~~~~-------~~~~~l~~~~~~~l~~~-g----~~~~~~~~~~-   72 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR-ERAI-------NGADLLKPAGIRVVEAA-G----LLAEVTRRGG-   72 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC-C----------CCCCEECHHHHHHHHHT-T----CHHHHHHTTC-
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC-CCcc-------CceeeECchHHHHHHHc-C----cHHHHHHhCC-
Confidence            7999999999999999999999999999999743 2100       00110000 00000000 0    0001100000 


Q ss_pred             ccccccccceeeCCe-e--eeCCCC-CCccccCCChHHHHHHHHhh---cCCcEEEcCeEEEEEEEeCCeE--EEEeCcc
Q 047483          170 RPWEGVIGELEVGGQ-F--TPFPSS-PPKYIGVNGMRPLADSLLAQ---TSMVSIVRPCWISNLQPFNGMW--HLSENVK  240 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~~~~~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~~--~v~~~~~  240 (253)
                       .+.. .......+. .  .+.... .+.+........+.+.|.+.   .++++|+++++|++++.++++|  .+++.++
T Consensus        73 -~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g  150 (399)
T 2x3n_A           73 -RVRH-ELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDG  150 (399)
T ss_dssp             -EEEC-EEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTS
T ss_pred             -Ccce-eEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCC
Confidence             0000 000011110 0  111100 01111111223444444443   3368999999999999988888  8887777


Q ss_pred             ceeecCEEEEcCC
Q 047483          241 LRGQFDVVVIAHN  253 (253)
Q Consensus       241 ~~~~ad~VV~AtG  253 (253)
                      .+++||.||+|||
T Consensus       151 ~~~~ad~vV~AdG  163 (399)
T 2x3n_A          151 RVLRPRVVVGADG  163 (399)
T ss_dssp             CEEEEEEEEECCC
T ss_pred             CEEECCEEEECCC
Confidence            7899999999998

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.46  E-value=1.6e-12  Score=119.01  Aligned_cols=45  Identities=36%  Similarity=0.636  Sum_probs=39.2

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRM  134 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~  134 (253)
                      ..+||+|||||++||++|+.|+++|++|+|||++. ..||++.+..
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~-~~GG~~~~~~   56 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG-KAGGKLRSVS   56 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS-SSCSSCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC-CCCCceeeec
Confidence            34799999999999999999999999999999985 5899876543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.46  E-value=1.3e-12  Score=107.44  Aligned_cols=73  Identities=37%  Similarity=0.649  Sum_probs=57.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLER  166 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +||+||||||+||++|+.|+++|++|+||||+. .+||++.+....  +..++.|.+++......+......+...
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~-~~GG~~~~~~~~--~~~~d~g~~~~~~~~~~~~~~~~~~~~~   75 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR-GSGGRMSSKRSD--AGALDMGAQYFTARDRRFATAVKQWQAQ   75 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCGGGCEEEET--TEEEECSCCCBCCCSHHHHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC-CCCCcccccccC--CceeecCccccccCcHHHHHHHHHHHhc
Confidence            799999999999999999999999999999985 589988766554  4567778777776666655555554333

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.46  E-value=6.6e-13  Score=118.57  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++|+++|+.|+++|++|+|||+..
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            799999999999999999999999999999974

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.45  E-value=5.3e-13  Score=122.59  Aligned_cols=142  Identities=20%  Similarity=0.169  Sum_probs=79.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ++||+|||||++||++|+.|+++|++|+||||... .+.....       .       .+.   ..-.++++.+   ++.
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~-~~~~~r~-------~-------~l~---~~~~~~l~~l---Gl~   70 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ-RTGESRG-------L-------GFT---ARTMEVFDQR---GIL   70 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS-CCCCCCS-------E-------EEC---HHHHHHHHHT---TCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCce-------e-------EEC---HHHHHHHHHC---CCH
Confidence            48999999999999999999999999999999753 2211100       0       000   1111222221   111


Q ss_pred             cccccc--ccceeeCCeeeeC---CCCCC--ccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccc-
Q 047483          170 RPWEGV--IGELEVGGQFTPF---PSSPP--KYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKL-  241 (253)
Q Consensus       170 ~~~~~~--~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~-  241 (253)
                      ..+...  .......+.....   ....+  ..+....+..++...+.+. +++|+++++|++++++++++.++..++. 
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~v~~~~~~g  149 (499)
T 2qa2_A           71 PAFGPVETSTQGHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGR-GAELLRGHTVRALTDEGDHVVVEVEGPDG  149 (499)
T ss_dssp             GGGCSCCEESEEEETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHT-TCEEEESCEEEEEEECSSCEEEEEECSSC
T ss_pred             HHHHhccccccceecceecccccCCCCCCceEecCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEcCCC
Confidence            111100  0000000110111   10011  0111112333333333333 6999999999999998888888765543 


Q ss_pred             --eeecCEEEEcCC
Q 047483          242 --RGQFDVVVIAHN  253 (253)
Q Consensus       242 --~~~ad~VV~AtG  253 (253)
                        +++||+||.|||
T Consensus       150 ~~~~~a~~vVgADG  163 (499)
T 2qa2_A          150 PRSLTTRYVVGCDG  163 (499)
T ss_dssp             EEEEEEEEEEECCC
T ss_pred             cEEEEeCEEEEccC
Confidence              799999999998

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.44  E-value=8.6e-13  Score=121.96  Aligned_cols=34  Identities=29%  Similarity=0.584  Sum_probs=32.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||||++||++|+.|+++|++|+||||..
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~   38 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP   38 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4799999999999999999999999999999975

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.42  E-value=7.6e-13  Score=114.54  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=76.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||++. ..||.+... ++..        .++                    
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~~gg~~~~~-~~~~--------~~~--------------------   54 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP-EPGGQLTAL-YPEK--------YIY--------------------   54 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SSCHHHHHT-CTTS--------EEC--------------------
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC-CCCCeeecc-CCCc--------eee--------------------
Confidence            4799999999999999999999999999999975 366544221 0000        000                    


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHH---HhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSL---LAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad  246 (253)
                                       ..+.. +. .   ....+.+.+   +++. +++++++++|++++.+++.|.+.+.++..+.+|
T Consensus        55 -----------------~~~~~-~~-~---~~~~~~~~l~~~~~~~-~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~  111 (335)
T 2zbw_A           55 -----------------DVAGF-PK-V---YAKDLVKGLVEQVAPF-NPVYSLGERAETLEREGDLFKVTTSQGNAYTAK  111 (335)
T ss_dssp             -----------------CSTTC-SS-E---EHHHHHHHHHHHHGGG-CCEEEESCCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             -----------------ccCCC-CC-C---CHHHHHHHHHHHHHHc-CCEEEeCCEEEEEEECCCEEEEEECCCCEEEeC
Confidence                             00000 00 0   012333333   3333 489999999999998887898887776789999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|||
T Consensus       112 ~lv~AtG  118 (335)
T 2zbw_A          112 AVIIAAG  118 (335)
T ss_dssp             EEEECCT
T ss_pred             EEEECCC
Confidence            9999998

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.42  E-value=6.1e-13  Score=114.13  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=34.1

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ++.+||+|||||++|++||+.|+++|++|+|||++.  .||.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~--~gg~   43 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT--NRNR   43 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC--CGGG
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC--CCCe
Confidence            345899999999999999999999999999999863  4543

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.42  E-value=1.6e-12  Score=120.46  Aligned_cols=147  Identities=18%  Similarity=0.182  Sum_probs=80.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc-------ccccc-CCCcccccc--------ccceeccCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM-------GTRMI-GPQPLIFDH--------AAQFFTVND  153 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~-------~~~~~-~~~~~~~~~--------~~~~~~~~~  153 (253)
                      ..||+|||||++|+++|+.|++.|++|+|||++.. .+++.       ..... ......+..        +........
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~-~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~  185 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE-VRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD  185 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCC-HHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCc-ccccccchhcccccccccccccceeccCCcccccCCceEEEecc
Confidence            47999999999999999999999999999999753 32211       11000 000011111        110000001


Q ss_pred             h--hHHHHHHhhhhccccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhc--CCcEEEcCeEEEEEEEe
Q 047483          154 S--RFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT--SMVSIVRPCWISNLQPF  229 (253)
Q Consensus       154 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~  229 (253)
                      .  ...+.++.+...+....+..           .   .  ..+.+......+.+.|.+..  .|++|+++++|++|+.+
T Consensus       186 ~~~~~~~v~~~~~~~G~~~~i~~-----------~---~--~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~  249 (549)
T 3nlc_A          186 PNFYGRKVITEFVEAGAPEEILY-----------V---S--KPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME  249 (549)
T ss_dssp             TTCHHHHHHHHHHHTTCCGGGGT-----------B---S--SCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES
T ss_pred             ccccHHHHHHHHHHcCCCceEee-----------c---c--ccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe
Confidence            0  11222222222221111100           0   0  01111111234444443332  27999999999999987


Q ss_pred             CCeE-EEEeCccceeecCEEEEcCC
Q 047483          230 NGMW-HLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       230 ~~~~-~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ++.+ .|.+.++..+.||.||+|+|
T Consensus       250 ~~~v~gV~l~~G~~i~Ad~VVlA~G  274 (549)
T 3nlc_A          250 DGQITGVTLSNGEEIKSRHVVLAVG  274 (549)
T ss_dssp             SSBEEEEEETTSCEEECSCEEECCC
T ss_pred             CCEEEEEEECCCCEEECCEEEECCC
Confidence            7654 47777777899999999998

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.41  E-value=7.7e-13  Score=118.18  Aligned_cols=35  Identities=31%  Similarity=0.679  Sum_probs=32.3

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVK-STVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~  123 (253)
                      ..+||+|||||++||++|+.|+++|++ |+|||+..
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            348999999999999999999999999 99999975

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.41  E-value=4.9e-12  Score=115.62  Aligned_cols=55  Identities=13%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccc----eeecCEEEEcCC
Q 047483          198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKL----RGQFDVVVIAHN  253 (253)
Q Consensus       198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~----~~~ad~VV~AtG  253 (253)
                      ..++..+.+.|.+..+. +|+++++|++|+.++++|.|+..++.    +++||+||+|.+
T Consensus       237 ~gG~~~l~~~l~~~l~~-~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p  295 (498)
T 2iid_A          237 VDGMDKLPTAMYRDIQD-KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT  295 (498)
T ss_dssp             TTCTTHHHHHHHHHTGG-GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSC
T ss_pred             CCcHHHHHHHHHHhccc-ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCC
Confidence            34678888888887653 89999999999998888888765443    479999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.41  E-value=9.9e-13  Score=112.70  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=72.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|+++|++|+|||++   .||.+.....                                   
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~---~gg~~~~~~~-----------------------------------   57 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGET---PGGQLTEAGI-----------------------------------   57 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS---TTGGGGGCCE-----------------------------------
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEecc---CCCeeccccc-----------------------------------
Confidence            79999999999999999999999999999986   5665432100                                   


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                    ...++...  ......+...+...+++. ++++++ ++|+++..+++.|.+.+.++..+.+|.||+
T Consensus        58 --------------~~~~~~~~--~~~~~~~~~~~~~~~~~~-~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvl  119 (323)
T 3f8d_A           58 --------------VDDYLGLI--EIQASDMIKVFNKHIEKY-EVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVIL  119 (323)
T ss_dssp             --------------ECCSTTST--TEEHHHHHHHHHHHHHTT-TCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEE
T ss_pred             --------------ccccCCCC--CCCHHHHHHHHHHHHHHc-CCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEE
Confidence                          00000000  000001122233333333 588888 899999988888998888778999999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       120 AtG  122 (323)
T 3f8d_A          120 GIG  122 (323)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            998

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.40  E-value=1.8e-12  Score=121.29  Aligned_cols=35  Identities=37%  Similarity=0.646  Sum_probs=32.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+||+|||||++|+++|+.|+++|++|+|||+..
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~   56 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA   56 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence            35899999999999999999999999999999974

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.40  E-value=1.7e-12  Score=119.38  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=31.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++|+++|+.|+++|++|+|||+..
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            799999999999999999999999999999975

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.39  E-value=2.6e-12  Score=108.95  Aligned_cols=107  Identities=19%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|+++|++|+|||++..  .+.+...                                     
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~--~~~~~~~-------------------------------------   43 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGER--RNRFASH-------------------------------------   43 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC--GGGGCSC-------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc--ccccchh-------------------------------------
Confidence            7999999999999999999999999999998641  1111000                                     


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                    ...++...  ......+...+...+++.++++++. .+|++++.+++.|.+.+.++..+.+|.||+
T Consensus        44 --------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vvi  106 (297)
T 3fbs_A           44 --------------SHGFLGQD--GKAPGEIIAEARRQIERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLIL  106 (297)
T ss_dssp             --------------CCSSTTCT--TCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEE
T ss_pred             --------------hcCCcCCC--CCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEE
Confidence                          00000000  0000012223333334444567664 599999999889999888877899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       107 AtG  109 (297)
T 3fbs_A          107 AMG  109 (297)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.39  E-value=1e-12  Score=113.17  Aligned_cols=112  Identities=18%  Similarity=0.207  Sum_probs=75.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|+++|++|+|||+.+ ..||.+... ++..        .                       
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~~gG~~~~~-~~~~--------~-----------------------   54 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLP-QLGGQLSAL-YPEK--------Y-----------------------   54 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCHHHHHH-CTTS--------E-----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC-CCCceehhc-CCCc--------e-----------------------
Confidence            699999999999999999999999999999985 366655211 1100        0                       


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCccceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~~~ad~VV  249 (253)
                                    ....++..  ......+...+...+++. +++++++++|++++..++ .|.+.+.++ .+.+|.||
T Consensus        55 --------------~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV  116 (332)
T 3lzw_A           55 --------------IYDVAGFP--KIRAQELINNLKEQMAKF-DQTICLEQAVESVEKQADGVFKLVTNEE-THYSKTVI  116 (332)
T ss_dssp             --------------ECCSTTCS--SEEHHHHHHHHHHHHTTS-CCEEECSCCEEEEEECTTSCEEEEESSE-EEEEEEEE
T ss_pred             --------------EeccCCCC--CCCHHHHHHHHHHHHHHh-CCcEEccCEEEEEEECCCCcEEEEECCC-EEEeCEEE
Confidence                          00000000  000011233333333333 599999999999998866 788887765 49999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       117 lAtG  120 (332)
T 3lzw_A          117 ITAG  120 (332)
T ss_dssp             ECCT
T ss_pred             ECCC
Confidence            9998

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.39  E-value=1.9e-12  Score=114.37  Aligned_cols=35  Identities=26%  Similarity=0.562  Sum_probs=32.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||+...
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            47999999999999999999999999999999753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.39  E-value=1.2e-12  Score=114.77  Aligned_cols=135  Identities=16%  Similarity=0.264  Sum_probs=77.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +||+|||||++|+++|+.|++.|+ +|+|||++.  .||.+......  .       .++.....      ..  ..++.
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~--~Gg~~~~~~~~--~-------~~~~~~~~------~~--~~g~~   65 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT--VGHSFKHWPKS--T-------RTITPSFT------SN--GFGMP   65 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS--TTHHHHTSCTT--C-------BCSSCCCC------CG--GGTCC
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC--CCCccccCccc--c-------cccCcchh------cc--cCCch
Confidence            799999999999999999999999 999999974  67644321100  0       00000000      00  00000


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                       .+...  .......+...    ..+.....+..++..++++. +++++++++|++|+.+++.|.|.+.++ .+.+|.||
T Consensus        66 -~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vV  136 (369)
T 3d1c_A           66 -DMNAI--SMDTSPAFTFN----EEHISGETYAEYLQVVANHY-ELNIFENTVVTNISADDAYYTIATTTE-TYHADYIF  136 (369)
T ss_dssp             -CTTCS--STTCCHHHHHC----CSSCBHHHHHHHHHHHHHHT-TCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEE
T ss_pred             -hhhhc--ccccccccccc----ccCCCHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEE
Confidence             00000  00000000000    00111111234444444444 589999999999998877898877654 79999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       137 lAtG  140 (369)
T 3d1c_A          137 VATG  140 (369)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9998

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.39  E-value=7.6e-12  Score=103.47  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++|+.+|+.|++.|.+|+|||++....|  ..   ... ..    + . +  ....   ++.++.     
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G--~~---~~~-~~----~-~-~--~~~~---~~~~~~-----   60 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM--MP---FLP-PK----P-P-F--PPGS---LLERAY-----   60 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT--CC---SSC-CC----S-C-C--CTTC---HHHHHC-----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC--cc---cCc-cc----c-c-c--chhh---HHhhhc-----
Confidence            48999999999999999999999999999999743233  11   000 00    0 0 0  0001   111110     


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE-EEEeCccceeecCEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW-HLSENVKLRGQFDVV  248 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~-~v~~~~~~~~~ad~V  248 (253)
                                +..+         +   ....+..++...+++.++++++ +++|++|..+++.+ .+.+.++..++||.|
T Consensus        61 ----------d~~g---------~---~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~V  117 (232)
T 2cul_A           61 ----------DPKD---------E---RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKV  117 (232)
T ss_dssp             ----------CTTC---------C---CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEE
T ss_pred             ----------cCCC---------C---CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEE
Confidence                      0000         0   0011233344444444468888 67999999887764 566666678999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       118 V~A~G  122 (232)
T 2cul_A          118 VLAVG  122 (232)
T ss_dssp             EECCT
T ss_pred             EECCC
Confidence            99998

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.39  E-value=1.2e-12  Score=114.56  Aligned_cols=114  Identities=14%  Similarity=0.201  Sum_probs=75.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||+.. ..||.+... .+..        ..+                    
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~~gg~~~~~-~~~~--------~~~--------------------   63 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMP-QLGGQLAAL-YPEK--------HIY--------------------   63 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCHHHHHT-CTTS--------EEC--------------------
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCC-CCCCccccc-CCCc--------ccc--------------------
Confidence            4799999999999999999999999999999975 366544211 0000        000                    


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCccceeecCEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENVKLRGQFDVV  248 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~~~ad~V  248 (253)
                                       ..++.. . .....+...+...+++. +++++++++|++++..++ .|.+.+.++..+.+|.|
T Consensus        64 -----------------~~~~~~-~-~~~~~~~~~l~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~l  123 (360)
T 3ab1_A           64 -----------------DVAGFP-E-VPAIDLVESLWAQAERY-NPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAV  123 (360)
T ss_dssp             -----------------CSTTCS-S-EEHHHHHHHHHHHHHTT-CCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred             -----------------cCCCCC-C-CCHHHHHHHHHHHHHHh-CCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEE
Confidence                             000000 0 00001122222223333 589999999999998765 78888777778999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|||
T Consensus       124 i~AtG  128 (360)
T 3ab1_A          124 LIAAG  128 (360)
T ss_dssp             EECCT
T ss_pred             EEccC
Confidence            99998

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.37  E-value=5.4e-12  Score=114.76  Aligned_cols=55  Identities=11%  Similarity=-0.002  Sum_probs=46.6

Q ss_pred             CChHHHHHHHHhhcC----------CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          199 NGMRPLADSLLAQTS----------MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       199 ~~~~~l~~~l~~~~~----------gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .++..+.+.|.+.+.          +++|+++++|++|+.+++++.|++.++.+++||+||+|++
T Consensus       203 gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~  267 (472)
T 1b37_A          203 RGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSAS  267 (472)
T ss_dssp             TCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSC
T ss_pred             CcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecC
Confidence            467788888887652          3689999999999998888998888877899999999975

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.37  E-value=4.5e-12  Score=108.52  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=74.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +||+|||||++|+++|+.|+++|+ +|+|||++  ..||.+......                                 
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~--~~gg~~~~~~~~---------------------------------   46 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG--MPGGQITGSSEI---------------------------------   46 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS--STTCGGGGCSCB---------------------------------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC--CCCccccccccc---------------------------------
Confidence            699999999999999999999999 99999995  256654221000                                 


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                      ..+++. +.......+...+...+++. ++++++ ++|++++.+++.|.+...++..+++|.||
T Consensus        47 ----------------~~~~~~-~~~~~~~~~~~~l~~~~~~~-~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv  107 (311)
T 2q0l_A           47 ----------------ENYPGV-KEVVSGLDFMQPWQEQCFRF-GLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVI  107 (311)
T ss_dssp             ----------------CCSTTC-CSCBCHHHHHHHHHHHHHTT-SCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEE
T ss_pred             ----------------ccCCCC-cccCCHHHHHHHHHHHHHHc-CCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEE
Confidence                            000000 00011011222333333333 588888 78999998888888877777789999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|||
T Consensus       108 ~AtG  111 (311)
T 2q0l_A          108 IATG  111 (311)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9998

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.36  E-value=1.7e-11  Score=112.15  Aligned_cols=61  Identities=21%  Similarity=0.408  Sum_probs=46.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccccccCCCccccccccceeccC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN  152 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                      .+||+|||||++||++|+.|+++| .+|+|||++. ..||++.+.. ...++.++.|.+.+...
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~-~~GG~~~~~~-~~~g~~~~~g~~~~~~~   70 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND-TPGGLSRSFL-DENGFTWDLGGHVIFSH   70 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSS-SSSGGGCEEE-CTTSCEEESSCCCBCCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCC-CCCCeeeeee-cCCCcEEeeCCcccccC
Confidence            479999999999999999999998 7999999985 5899887631 12244555555554433

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.36  E-value=2.7e-12  Score=110.77  Aligned_cols=110  Identities=19%  Similarity=0.195  Sum_probs=71.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++|+++|+.|++.|++|+|||+. . .||.+.....            .                     
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~-~gg~~~~~~~------------~---------------------   52 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-M-PGGQIAWSEE------------V---------------------   52 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-C-TTGGGGGCSC------------B---------------------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-C-CCcccccccc------------c---------------------
Confidence            479999999999999999999999999999997 2 6665432100            0                     


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEe--CCe-EEEEeCccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPF--NGM-WHLSENVKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~--~~~-~~v~~~~~~~~~ad  246 (253)
                                      ..+++.. .......+...+...+++. ++++++ .+|++++.+  ++. |.+...++..+.+|
T Consensus        53 ----------------~~~~~~~-~~~~~~~~~~~l~~~~~~~-gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~  113 (325)
T 2q7v_A           53 ----------------ENFPGFP-EPIAGMELAQRMHQQAEKF-GAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAK  113 (325)
T ss_dssp             ----------------CCSTTCS-SCBCHHHHHHHHHHHHHHT-TCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEE
T ss_pred             ----------------ccCCCCC-CCCCHHHHHHHHHHHHHHc-CCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeC
Confidence                            0000000 0000001222233333333 588887 589999876  444 77766666789999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      +||+|||
T Consensus       114 ~vv~AtG  120 (325)
T 2q7v_A          114 AVILATG  120 (325)
T ss_dssp             EEEECCC
T ss_pred             EEEECcC
Confidence            9999998

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.36  E-value=8.8e-12  Score=114.43  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=32.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4799999999999999999999999999999975

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.36  E-value=2.9e-12  Score=124.34  Aligned_cols=52  Identities=13%  Similarity=0.048  Sum_probs=39.6

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeE-EEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMW-HLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~-~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...++..|.+.+  .|++|+++++|++|+.+++.+ .|.+.+ ++++||.||+|+|
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~-G~i~Ad~VV~AaG  204 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTAD-GVIPADIVVSCAG  204 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT-EEEECSEEEECCG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECC-cEEECCEEEECCc
Confidence            345555555543  279999999999999887775 455555 4899999999997

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.36  E-value=2.7e-12  Score=110.82  Aligned_cols=111  Identities=18%  Similarity=0.239  Sum_probs=74.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC---CCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN---HGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      +||+|||||++|+++|+.|+++|++|+|||+..   ...||.+....                                 
T Consensus        23 ~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~---------------------------------   69 (338)
T 3itj_A           23 NKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT---------------------------------   69 (338)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSS---------------------------------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccch---------------------------------
Confidence            799999999999999999999999999999953   12444332110                                 


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe---Cccceee
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE---NVKLRGQ  244 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~---~~~~~~~  244 (253)
                                      .+..+++. +.+.....+...+...+++. ++++++++ |++++.+++.|.+..   .++..+.
T Consensus        70 ----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~  130 (338)
T 3itj_A           70 ----------------EIENFPGF-PDGLTGSELMDRMREQSTKF-GTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVT  130 (338)
T ss_dssp             ----------------EECCSTTC-TTCEEHHHHHHHHHHHHHHT-TCEEECSC-EEEEECSSSSEEEEETTCSSSCCEE
T ss_pred             ----------------hhcccCCC-cccCCHHHHHHHHHHHHHHc-CCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEE
Confidence                            00000110 01111112233333344444 59999998 999998888898876   3567899


Q ss_pred             cCEEEEcCC
Q 047483          245 FDVVVIAHN  253 (253)
Q Consensus       245 ad~VV~AtG  253 (253)
                      +|.||+|+|
T Consensus       131 ~d~vvlAtG  139 (338)
T 3itj_A          131 TDAIILATG  139 (338)
T ss_dssp             EEEEEECCC
T ss_pred             eCEEEECcC
Confidence            999999998

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.35  E-value=3.3e-12  Score=101.14  Aligned_cols=106  Identities=15%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+.+|..|++.|.+|+|+|+.+. .-.+.                ..+                     
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~-~~~~~----------------~~~---------------------   43 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS-KVKGV----------------SRV---------------------   43 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC-TTTTC----------------SCC---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC-cccCc----------------hhh---------------------
Confidence            6899999999999999999999999999998741 10000                000                     


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                     ..+++. +.......+...+...+++. +++++++ +|++++.+++.|.+.++++ .+++|.||+
T Consensus        44 ---------------~~~~~~-~~~~~~~~~~~~l~~~~~~~-gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~  104 (180)
T 2ywl_A           44 ---------------PNYPGL-LDEPSGEELLRRLEAHARRY-GAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLL  104 (180)
T ss_dssp             ---------------CCSTTC-TTCCCHHHHHHHHHHHHHHT-TCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEE
T ss_pred             ---------------hccCCC-cCCCCHHHHHHHHHHHHHHc-CCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEE
Confidence                           000000 00000011223333333333 5999999 9999998877888887776 899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       105 A~G  107 (180)
T 2ywl_A          105 CTH  107 (180)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            998

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.35  E-value=4.6e-12  Score=114.70  Aligned_cols=34  Identities=41%  Similarity=0.626  Sum_probs=32.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||+..
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3799999999999999999999999999999975

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.35  E-value=5e-12  Score=117.73  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=34.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||||++||++|+.|+++|++|+||||... .||
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~-~gg  158 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF-SGG  158 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS-SCT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC-CCC
Confidence            37999999999999999999999999999999853 454

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.35  E-value=8.5e-12  Score=116.28  Aligned_cols=39  Identities=28%  Similarity=0.519  Sum_probs=34.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ++||+|||||++||++|+.|+++|++|+||||... .||.
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~-~gg~  164 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV-IGGN  164 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC-CCCc
Confidence            48999999999999999999999999999999853 5543

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.35  E-value=7.5e-12  Score=116.17  Aligned_cols=33  Identities=39%  Similarity=0.577  Sum_probs=31.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++|++|+||||..
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~   59 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTD   59 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            799999999999999999999999999999975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.35  E-value=8e-12  Score=113.69  Aligned_cols=145  Identities=12%  Similarity=0.123  Sum_probs=80.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhH---cCCe---EEEEcCCCCCCCCCccccccCCC-ccccccccceeccCchhHHHHHHhh
Q 047483           91 PHVGIIGGGMAGLACALSLDK---RGVK---STVFDTGNHGLGGRMGTRMIGPQ-PLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~---~g~~---v~~~e~~~~~~gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      .||+|||||++|+++|..|++   .|++   |+|||+.. ..||.|........ ..........+....          
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~-~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~----------   71 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQA-DWGGQWNYTWRTGLDENGEPVHSSMYRYLW----------   71 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSS-SSCGGGSCCSCCSBCTTSSBCCCCCCTTCB----------
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCC-CCCCEeecCCCCCccccCCCCcCccccchh----------
Confidence            699999999999999999999   9999   99999985 47887653221100 000000000110000          


Q ss_pred             hhccccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcE--EEcCeEEEEEEEeCC--eEEEEeCc
Q 047483          164 LERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVS--IVRPCWISNLQPFNG--MWHLSENV  239 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~--i~~~t~V~~i~~~~~--~~~v~~~~  239 (253)
                        ......... +..+...   .....+.+.+.....+.++++.+++++ +++  |+++++|++|+..++  .|.|+..+
T Consensus        72 --~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~  144 (464)
T 2xve_A           72 --SNGPKECLE-FADYTFD---EHFGKPIASYPPREVLWDYIKGRVEKA-GVRKYIRFNTAVRHVEFNEDSQTFTVTVQD  144 (464)
T ss_dssp             --CSSCGGGTC-BTTBCHH---HHHSSCCCSSCBHHHHHHHHHHHHHHH-TCGGGEECSEEEEEEEEETTTTEEEEEEEE
T ss_pred             --hcCChhhcc-cCCCCCC---cccCCCCCCCCCHHHHHHHHHHHHHHc-CCcceEEeCCEEEEEEEcCCCCcEEEEEEE
Confidence              000000000 0000000   000011122222223444555555554 366  999999999998766  78887543


Q ss_pred             ---c--ceeecCEEEEcCC
Q 047483          240 ---K--LRGQFDVVVIAHN  253 (253)
Q Consensus       240 ---~--~~~~ad~VV~AtG  253 (253)
                         +  .++.+|.||+|||
T Consensus       145 ~~~g~~~~~~~d~VVvAtG  163 (464)
T 2xve_A          145 HTTDTIYSEEFDYVVCCTG  163 (464)
T ss_dssp             TTTTEEEEEEESEEEECCC
T ss_pred             cCCCceEEEEcCEEEECCC
Confidence               2  5789999999998

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.34  E-value=9.5e-13  Score=119.28  Aligned_cols=141  Identities=9%  Similarity=0.091  Sum_probs=78.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-----CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCch----hHHHHHH
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-----VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS----RFHELVD  161 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-----~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  161 (253)
                      +||+|||||++|+++|+.|++.|     .+|+|||+... .|...+ ...+...+.......+.....+    .+...+.
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~-~g~~~~-~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~  108 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGD-YRWHGN-TLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH  108 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSS-CCSSGG-GCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCC-CCCcCC-CCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence            69999999999999999999999     99999999853 552221 1111111100000000000000    0011111


Q ss_pred             hhhhccccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEe---CCeE--EEE
Q 047483          162 GWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPF---NGMW--HLS  236 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~---~~~~--~v~  236 (253)
                      .   .+                ....+..+...+.....+..+++.+++++. ++++++++|++|+.+   ++.|  .|.
T Consensus       109 ~---~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~~V~~i~~~~~~~~~~~~~V~  168 (463)
T 3s5w_A          109 K---HD----------------RLVDFINLGTFYPCRMEFNDYLRWVASHFQ-EQSRYGEEVLRIEPMLSAGQVEALRVI  168 (463)
T ss_dssp             H---TT----------------CHHHHHHHCCSCCBHHHHHHHHHHHHTTCT-TTEEESEEEEEEEEEEETTEEEEEEEE
T ss_pred             h---cC----------------ceeecccccCCCCCHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEEecCCCceEEEEEE
Confidence            0   00                000000001111121234555665665554 899999999999877   4545  555


Q ss_pred             eCccc----eeecCEEEEcCC
Q 047483          237 ENVKL----RGQFDVVVIAHN  253 (253)
Q Consensus       237 ~~~~~----~~~ad~VV~AtG  253 (253)
                      +.++.    .+.||.||+|||
T Consensus       169 ~~~g~g~~~~~~~d~lVlAtG  189 (463)
T 3s5w_A          169 SRNADGEELVRTTRALVVSPG  189 (463)
T ss_dssp             EEETTSCEEEEEESEEEECCC
T ss_pred             EecCCCceEEEEeCEEEECCC
Confidence            54543    799999999998

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.34  E-value=6.8e-12  Score=107.96  Aligned_cols=109  Identities=17%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.  ..||.+.....    .                            
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~gg~~~~~~~----~----------------------------   60 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA--VAGGLTAEAPL----V----------------------------   60 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--STTGGGGGCSC----B----------------------------
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC--CCCccccccch----h----------------------------
Confidence            3479999999999999999999999999999995  25664421100    0                            


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEE
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVV  248 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~V  248 (253)
                                       ..+++.  .......+...+...+++. ++++++ .+|++++.+++.|.+.. ++..+.+|.|
T Consensus        61 -----------------~~~~~~--~~~~~~~~~~~~~~~~~~~-~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~l  118 (319)
T 3cty_A           61 -----------------ENYLGF--KSIVGSELAKLFADHAANY-AKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYV  118 (319)
T ss_dssp             -----------------CCBTTB--SSBCHHHHHHHHHHHHHTT-SEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEE
T ss_pred             -----------------hhcCCC--cccCHHHHHHHHHHHHHHc-CCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEE
Confidence                             000000  0000001122222223333 588888 68999998888888866 4568999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       119 i~AtG  123 (319)
T 3cty_A          119 IITTG  123 (319)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99998

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.33  E-value=1.8e-11  Score=114.48  Aligned_cols=38  Identities=29%  Similarity=0.553  Sum_probs=34.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc------CCeEEEEcCCCCCCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR------GVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~------g~~v~~~e~~~~~~gg~  129 (253)
                      +||+|||||++||++|+.|++.      |++|+||||+.. .|+.
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~-~g~~   79 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH-IGAH   79 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS-TTTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCC-CCCc
Confidence            8999999999999999999999      999999999853 5543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.33  E-value=5.2e-12  Score=109.58  Aligned_cols=110  Identities=16%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+|||||++|+++|+.|++.|++|+|||+.  ..||.+.....    .                            
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~gg~~~~~~~----~----------------------------   58 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT--SFGGALMTTTD----V----------------------------   58 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS--SCSCGGGSCSC----B----------------------------
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCceeccch----h----------------------------
Confidence            3479999999999999999999999999999975  25654321000    0                            


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEE-EeCccceeecCE
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHL-SENVKLRGQFDV  247 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v-~~~~~~~~~ad~  247 (253)
                                       ..+++.. .......+...+...+++. ++++++++ |++++. ++.|.+ .+.++..+.+|.
T Consensus        59 -----------------~~~~~~~-~~~~~~~~~~~l~~~~~~~-~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~  117 (335)
T 2a87_A           59 -----------------ENYPGFR-NGITGPELMDEMREQALRF-GADLRMED-VESVSL-HGPLKSVVTADGQTHRARA  117 (335)
T ss_dssp             -----------------CCSTTCT-TCBCHHHHHHHHHHHHHHT-TCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEE
T ss_pred             -----------------hhcCCCC-CCCCHHHHHHHHHHHHHHc-CCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCE
Confidence                             0000000 0000011222233333333 58999987 999987 666777 666667899999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|||
T Consensus       118 lviAtG  123 (335)
T 2a87_A          118 VILAMG  123 (335)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999998

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.33  E-value=4.7e-12  Score=112.21  Aligned_cols=33  Identities=30%  Similarity=0.561  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++|++|+|||+..
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            799999999999999999999999999999974

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.32  E-value=7.3e-12  Score=107.27  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=32.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+||+|||||++|+++|+.|+++|++|+|||+..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            34899999999999999999999999999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.32  E-value=4.3e-12  Score=108.99  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|++.|++|+|||+.  ..||.+......                                  
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~gg~~~~~~~~----------------------------------   49 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGM--EKGGQLTTTTEV----------------------------------   49 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCS--STTGGGGGCSBC----------------------------------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccC--CCCceEecchhh----------------------------------
Confidence            79999999999999999999999999999975  256643110000                                  


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                     ..++... .......+...+...+++. ++++++++ |+.++.+++.|.+ ..++..+.+|+||+
T Consensus        50 ---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~  110 (320)
T 1trb_A           50 ---------------ENWPGDP-NDLTGPLLMERMHEHATKF-ETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALII  110 (320)
T ss_dssp             ---------------CCSTTCC-SSCBHHHHHHHHHHHHHHT-TCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEE
T ss_pred             ---------------hhCCCCC-CCCCHHHHHHHHHHHHHHC-CCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEE
Confidence                           0000000 0000011222223333333 58999986 9999888888887 55667899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |||
T Consensus       111 AtG  113 (320)
T 1trb_A          111 ATG  113 (320)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.32  E-value=5e-12  Score=114.06  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG-VKSTVFDT  121 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~  121 (253)
                      .+||+|||||++|+++|++|+++| .+|+|||+
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            379999999999999999999999 99999999

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.32  E-value=3e-12  Score=119.13  Aligned_cols=35  Identities=26%  Similarity=0.562  Sum_probs=32.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+||+|||||++|+++|+.|+++|++|+|+|++..
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~   52 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDF   52 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSST
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            48999999999999999999999999999999853

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.32  E-value=2.1e-12  Score=111.67  Aligned_cols=110  Identities=17%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC---CCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN---HGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      +||+|||||++|+++|+.|++.|++|+|||+..   ...||.+....            .                    
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~------------~--------------------   56 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTT------------D--------------------   56 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCS------------E--------------------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeecc------------c--------------------
Confidence            799999999999999999999999999999821   12333321100            0                    


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCE
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDV  247 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~  247 (253)
                                       ...++... .......+...+...+++. ++++++++ |++++.+++.|.+.+ ++..+++|.
T Consensus        57 -----------------~~~~~~~~-~~~~~~~~~~~l~~~~~~~-gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~  115 (333)
T 1vdc_A           57 -----------------VENFPGFP-EGILGVELTDKFRKQSERF-GTTIFTET-VTKVDFSSKPFKLFT-DSKAILADA  115 (333)
T ss_dssp             -----------------ECCSTTCT-TCEEHHHHHHHHHHHHHHT-TCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEE
T ss_pred             -----------------cccCCCCc-cCCCHHHHHHHHHHHHHHC-CCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCE
Confidence                             00000000 0000001122222223333 58999987 999988888888876 667899999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|||
T Consensus       116 vv~A~G  121 (333)
T 1vdc_A          116 VILAIG  121 (333)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999998

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.32  E-value=2.5e-12  Score=114.81  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      +||+|||||++|+++|+.|+++  |++|+|||++.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            7999999999999999999999  99999999974

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.31  E-value=2.6e-11  Score=116.54  Aligned_cols=52  Identities=8%  Similarity=-0.007  Sum_probs=44.8

Q ss_pred             CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483          198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH  252 (253)
Q Consensus       198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At  252 (253)
                      ..++..+++.+.+   +++|+++++|++|++++++|.|++.++..++||+||+|+
T Consensus       530 ~~G~~~l~~aLa~---gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~  581 (776)
T 4gut_A          530 TPGYSVIIEKLAE---GLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTV  581 (776)
T ss_dssp             TTCTHHHHHHHHT---TSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECC
T ss_pred             CChHHHHHHHHHh---CCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECC
Confidence            3467888887775   479999999999999888899988887789999999996

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.30  E-value=1.2e-11  Score=113.50  Aligned_cols=129  Identities=17%  Similarity=0.184  Sum_probs=74.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+|||||++||++|+.|++.|++|+|||+... .|+.....              .    .+...+.+..   .+.
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~-~g~~~~~~--------------~----~~~~~~~l~~---~g~  148 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK-FSRHNVLH--------------L----WPFTIHDLRA---LGA  148 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS-CCCCCEEE--------------C----CHHHHHHHHT---TTH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc-cCCCCccc--------------C----ChhHHHHHHH---cCC
Confidence            358999999999999999999999999999999853 43221000              0    0111111111   111


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEe---CCeEEEEe--C-cc--
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPF---NGMWHLSE--N-VK--  240 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~---~~~~~v~~--~-~~--  240 (253)
                      ...+ ..   +..        ... ..+....+...+...+++ .+++|+++++|++++.+   ++.|.+..  . ++  
T Consensus       149 ~~~~-~~---~~~--------~~~-~~~~~~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~  214 (497)
T 2bry_A          149 KKFY-GR---FCT--------GTL-DHISIRQLQLLLLKVALL-LGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQL  214 (497)
T ss_dssp             HHHC-TT---TTC--------TTC-CEEEHHHHHHHHHHHHHH-TTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHH
T ss_pred             cccc-cc---ccc--------ccc-ccCCHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCE
Confidence            0000 00   000        000 001111223333333333 36999999999999874   34566665  3 44  


Q ss_pred             ceeecCEEEEcCC
Q 047483          241 LRGQFDVVVIAHN  253 (253)
Q Consensus       241 ~~~~ad~VV~AtG  253 (253)
                      .+++||+||+|||
T Consensus       215 ~~i~ad~VV~A~G  227 (497)
T 2bry_A          215 ASYEFDVLISAAG  227 (497)
T ss_dssp             HTCCBSEEEECCC
T ss_pred             EEEEcCEEEECCC
Confidence            4799999999998

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.30  E-value=2e-11  Score=110.60  Aligned_cols=44  Identities=23%  Similarity=0.311  Sum_probs=39.8

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      +.++||+|||||++||++|+.|+++|++|+|||++. ..||++.+
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~-~~GG~~~t   52 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQD-HYGGEAAS   52 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCGGGCE
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCccccc
Confidence            345899999999999999999999999999999986 59998766

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.29  E-value=4.9e-11  Score=101.55  Aligned_cols=38  Identities=29%  Similarity=0.583  Sum_probs=33.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg  128 (253)
                      .+||+|||||++|+++|+.|+++ |.+|+|+|+... .|+
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~-~gg   77 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS-PGG   77 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS-CCT
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC-CCC
Confidence            37999999999999999999997 999999999854 444

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.28  E-value=1.1e-11  Score=116.98  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=32.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH-cCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDK-RGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e~~~  123 (253)
                      .+||+|||||++||++|+.|++ .|++|+||||..
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~   66 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE   66 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3799999999999999999999 999999999975

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.28  E-value=1.5e-11  Score=105.29  Aligned_cols=108  Identities=17%  Similarity=0.248  Sum_probs=72.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|+.   .||.+....    .+      ..+                     
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~---~gG~~~~~~----~~------~~~---------------------   47 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER---FGGQILDTV----DI------ENY---------------------   47 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS---TTGGGGGCC----EE------CCB---------------------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC---CCceecccc----cc------ccc---------------------
Confidence            69999999999999999999999999999863   455442100    00      000                     


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC---CeEEEEeCccceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN---GMWHLSENVKLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~---~~~~v~~~~~~~~~ad~  247 (253)
                                        ...  .+.....+...+...+++. +++++++++|+.++.+.   +.|.+...++..+.+|.
T Consensus        48 ------------------~~~--~~~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~  106 (310)
T 1fl2_A           48 ------------------ISV--PKTEGQKLAGALKVHVDEY-DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARS  106 (310)
T ss_dssp             ------------------TTB--SSEEHHHHHHHHHHHHHTS-CEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEE
T ss_pred             ------------------cCc--CCCCHHHHHHHHHHHHHHc-CCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCE
Confidence                              000  0000001223333333333 59999999999997653   36888877777899999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|||
T Consensus       107 lv~AtG  112 (310)
T 1fl2_A          107 IIVATG  112 (310)
T ss_dssp             EEECCC
T ss_pred             EEECcC
Confidence            999998

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.27  E-value=2.4e-11  Score=103.74  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=70.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEE-EcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTV-FDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~-~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +||+|||||++|+++|+.|+++|++|+| +|+.  ..||.+......                                 
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~--~~gG~~~~~~~~---------------------------------   49 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG--MPGGQITSSSEI---------------------------------   49 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS--STTGGGGGCSCB---------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC--CCCceeeeecee---------------------------------
Confidence            7999999999999999999999999999 9994  366654221000                                 


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC--CeEEE-EeCccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN--GMWHL-SENVKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~--~~~~v-~~~~~~~~~ad  246 (253)
                                      ..+++. +.+.....+...+...+++. +++++++ +|+++ .++  +.|.+ ..+++ .+.+|
T Consensus        50 ----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d  108 (315)
T 3r9u_A           50 ----------------ENYPGV-AQVMDGISFMAPWSEQCMRF-GLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAK  108 (315)
T ss_dssp             ----------------CCSTTC-CSCBCHHHHHHHHHHHHTTT-CCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEE
T ss_pred             ----------------ccCCCC-CCCCCHHHHHHHHHHHHHHc-CcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeC
Confidence                            000000 00011011223333333333 5899988 89999 777  78884 23444 89999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       109 ~lvlAtG  115 (315)
T 3r9u_A          109 AVIVCTG  115 (315)
T ss_dssp             EEEECCC
T ss_pred             EEEEeeC
Confidence            9999998

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.26  E-value=8.4e-11  Score=102.52  Aligned_cols=38  Identities=29%  Similarity=0.573  Sum_probs=33.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg  128 (253)
                      .+||+|||||++||++|+.|+++  |++|+|||++.. .||
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~-~GG  118 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA-PGG  118 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS-CCT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCC
Confidence            38999999999999999999997  999999999854 443

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.24  E-value=1.9e-10  Score=103.65  Aligned_cols=46  Identities=17%  Similarity=0.217  Sum_probs=40.2

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccc
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRM  134 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~  134 (253)
                      ...+||+|||+|++|+++|+.|+++|++|+|+|++. ..||++.+..
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~-~~gg~~~s~~   49 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNP-YYGGESSSIT   49 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCTTSCEEC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-Cccccccccc
Confidence            345899999999999999999999999999999985 5888876544

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.23  E-value=6.4e-11  Score=108.89  Aligned_cols=38  Identities=26%  Similarity=0.495  Sum_probs=34.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      +||+|||+|++||++|+.|+++|++|+||||... .||.
T Consensus        42 ~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~-~GG~   79 (510)
T 4at0_A           42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTSG-WGGA   79 (510)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC-CCCc
Confidence            7999999999999999999999999999999853 5554

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.23  E-value=4.1e-11  Score=111.75  Aligned_cols=35  Identities=26%  Similarity=0.540  Sum_probs=32.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||++..
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~   66 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDF   66 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            37999999999999999999999999999999753

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.22  E-value=4.7e-11  Score=108.62  Aligned_cols=45  Identities=24%  Similarity=0.266  Sum_probs=39.0

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      ++..+||+|||+|++|+++|+.|++.|++|+|+|++. ..||...+
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~-~~Gg~~~s   61 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNP-YYGGETAS   61 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCGGGCE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccC-CCCCCccc
Confidence            3345899999999999999999999999999999986 48886554

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.21  E-value=1.6e-10  Score=106.81  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|++   .|++|+|||+..
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            3799999999999999999999   999999999964

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.18  E-value=7.1e-11  Score=110.67  Aligned_cols=145  Identities=11%  Similarity=0.146  Sum_probs=76.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+||+|||||++|+++|+.|++.|.+|+|+|+.....|+..-         ....+..    ....+.+.++.+  .+..
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c---------~ps~gGi----a~~~lv~el~al--~g~~   85 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSC---------NPAIGGV----AKGQITREIDAL--GGEM   85 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS---------CSEEECH----HHHHHHHHHHHH--TCSH
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCcc---------ccchhhh----hHHHHHHHHHhc--ccHH
Confidence            489999999999999999999999999999997422333110         0000000    000111111111  0000


Q ss_pred             cccccccc-ceeeCCeeee--CCCC-CCc-cccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEE-EEeCcccee
Q 047483          170 RPWEGVIG-ELEVGGQFTP--FPSS-PPK-YIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH-LSENVKLRG  243 (253)
Q Consensus       170 ~~~~~~~~-~~~~~~~~~~--~~~~-~~~-~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~  243 (253)
                      ..+..... .+.   ....  .+.. ... ......+...+...+++.++++|+ +..|+++..+++.+. |.+.++..+
T Consensus        86 ~~~~d~~gi~f~---~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i  161 (641)
T 3cp8_A           86 GKAIDATGIQFR---MLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAI  161 (641)
T ss_dssp             HHHHHHHEEEEE---EECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEE
T ss_pred             HHHHHhcCCchh---hcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEE
Confidence            00000000 000   0000  0000 000 011112233334444444578885 558999988877765 667777789


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      .||.||+|||
T Consensus       162 ~Ad~VVLATG  171 (641)
T 3cp8_A          162 QAKAAILACG  171 (641)
T ss_dssp             EEEEEEECCT
T ss_pred             EeCEEEECcC
Confidence            9999999998

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.18  E-value=9.4e-11  Score=107.63  Aligned_cols=68  Identities=12%  Similarity=-0.021  Sum_probs=49.8

Q ss_pred             eeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC--------CeEEEEeCcc-----ceeecCEEEEc
Q 047483          185 FTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN--------GMWHLSENVK-----LRGQFDVVVIA  251 (253)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~--------~~~~v~~~~~-----~~~~ad~VV~A  251 (253)
                      ++++..+...|.....+.++++..++++. ..|+|+++|++++..+        +.|.|+..++     .++.|+.||+|
T Consensus       131 l~~f~~~~~~~p~r~E~~~Yl~~~A~~~~-~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVla  209 (501)
T 4b63_A          131 LIHFTNLSTFLPARLEFEDYMRWCAQQFS-DVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIA  209 (501)
T ss_dssp             HHHHHTTCCSCCBHHHHHHHHHHHHHTTG-GGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEEC
T ss_pred             ccCCccccCCCCCHHHHHHHHHHHHHHcC-CceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEEC
Confidence            34444444455555567888888888875 6799999999998754        2488875432     46899999999


Q ss_pred             CC
Q 047483          252 HN  253 (253)
Q Consensus       252 tG  253 (253)
                      +|
T Consensus       210 tG  211 (501)
T 4b63_A          210 IG  211 (501)
T ss_dssp             CC
T ss_pred             cC
Confidence            98

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.18  E-value=4.5e-11  Score=102.55  Aligned_cols=39  Identities=33%  Similarity=0.627  Sum_probs=35.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +|||+|||||++|+++|+.|++.|++|+|||++.  .||.+
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~--~gG~~   44 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI--PGGQM   44 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--TTGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--CCCee
Confidence            4899999999999999999999999999999863  67655

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.17  E-value=1.3e-10  Score=107.72  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|++   .|++|+|||+..
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4799999999999999999999   999999999964

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.17  E-value=5.4e-11  Score=112.80  Aligned_cols=33  Identities=33%  Similarity=0.447  Sum_probs=31.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhH-----cCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDK-----RGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~-----~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|++     .|++|+||||..
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            799999999999999999999     999999999974

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.17  E-value=1.5e-10  Score=105.76  Aligned_cols=40  Identities=18%  Similarity=0.129  Sum_probs=36.3

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      |++++++++|++++.+++++.+.++++..+.+|.||+|+|
T Consensus       246 Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G  285 (484)
T 3o0h_A          246 GISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATG  285 (484)
T ss_dssp             TCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCC
T ss_pred             CCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeC
Confidence            7999999999999988778888888877899999999998

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.16  E-value=6.1e-10  Score=103.82  Aligned_cols=39  Identities=38%  Similarity=0.527  Sum_probs=34.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      .+||+|||+|++||++|+.|+++|++|+|||+... .||.
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~-~~~~  164 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI-PGGN  164 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSS-SCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCcc
Confidence            47999999999999999999999999999999853 4543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.16  E-value=1.1e-10  Score=107.62  Aligned_cols=110  Identities=17%  Similarity=0.304  Sum_probs=73.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.   .||.+....    ++  .   .+..                  
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~---~GG~~~~~~----~~--~---~~~~------------------  260 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER---FGGQVLDTV----DI--E---NYIS------------------  260 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS---TTGGGTTCS----CB--C---CBTT------------------
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC---CCCcccccc----cc--c---ccCC------------------
Confidence            3589999999999999999999999999999963   565542110    00  0   0000                  


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEe---CCeEEEEeCccceeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPF---NGMWHLSENVKLRGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~---~~~~~v~~~~~~~~~a  245 (253)
                                       .+       +.....+...+...+++. +++++++++|+++..+   ++.|.+.+.++..+++
T Consensus       261 -----------------~~-------~~~~~~l~~~l~~~~~~~-gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~  315 (521)
T 1hyu_A          261 -----------------VP-------KTEGQKLAGALKAHVSDY-DVDVIDSQSASKLVPAATEGGLHQIETASGAVLKA  315 (521)
T ss_dssp             -----------------BS-------SBCHHHHHHHHHHHHHTS-CEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEE
T ss_pred             -----------------CC-------CCCHHHHHHHHHHHHHHc-CCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEc
Confidence                             00       000001222333333333 6999999999999764   3368888777778999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|||
T Consensus       316 d~vVlAtG  323 (521)
T 1hyu_A          316 RSIIIATG  323 (521)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99999998

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.16  E-value=9.9e-11  Score=109.44  Aligned_cols=144  Identities=16%  Similarity=0.178  Sum_probs=75.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|++.|.+|+|+|++....|...         +....+..    ....+.+.++.+.  +...
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~---------Cnps~GGi----a~g~lv~eldalg--g~~~   92 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMS---------CNPAIGGI----AKGIVVREIDALG--GEMG   92 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCC---------SCSEEECT----THHHHHHHHHHHT--CSHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcC---------cccccccc----chHHHHHHHHHhh--hHHH
Confidence            8999999999999999999999999999999742233210         00000100    0011111111110  0000


Q ss_pred             ccccccc-ceeeCCeeeeCCC---CCCc-cccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE-EEEeCccceee
Q 047483          171 PWEGVIG-ELEVGGQFTPFPS---SPPK-YIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW-HLSENVKLRGQ  244 (253)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~-~v~~~~~~~~~  244 (253)
                      .+..... .+.   .+....+   +... ......+...+...+++.++++| ++++|++|..+++.+ .|.+.++..+.
T Consensus        93 ~~~d~~gi~f~---~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~  168 (637)
T 2zxi_A           93 KAIDQTGIQFK---MLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYK  168 (637)
T ss_dssp             HHHHHHEEEEE---EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEE
T ss_pred             HHhhhccccee---ecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEE
Confidence            0000000 000   0000000   0000 00001123333333444457898 578999998877665 46667777899


Q ss_pred             cCEEEEcCC
Q 047483          245 FDVVVIAHN  253 (253)
Q Consensus       245 ad~VV~AtG  253 (253)
                      ||.||+|||
T Consensus       169 AdaVVLATG  177 (637)
T 2zxi_A          169 TKAVVVTTG  177 (637)
T ss_dssp             CSEEEECCT
T ss_pred             eCEEEEccC
Confidence            999999998

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.16  E-value=5.8e-11  Score=111.34  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|++.|.+|+|+|++.
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            3899999999999999999999999999999974

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.15  E-value=2.5e-10  Score=104.05  Aligned_cols=31  Identities=35%  Similarity=0.621  Sum_probs=30.3

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ||+|||||++|+++|+.|+++|++|+|+||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            7999999999999999999999999999997

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.14  E-value=4.3e-10  Score=97.43  Aligned_cols=37  Identities=30%  Similarity=0.541  Sum_probs=33.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGG  128 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg  128 (253)
                      +||+|||||++|+++|+.|+++  |++|+|+|++.. .||
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~-~gg  104 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA-PGG  104 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS-CCT
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc-ccc
Confidence            7999999999999999999998  999999999864 443

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.14  E-value=2.5e-10  Score=107.97  Aligned_cols=33  Identities=30%  Similarity=0.528  Sum_probs=31.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++|.+|+||||..
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~   38 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            799999999999999999999999999999975

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.13  E-value=1.6e-10  Score=106.08  Aligned_cols=33  Identities=36%  Similarity=0.558  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~  123 (253)
                      +||+|||||++|+++|+.|++   +|++|+|||+..
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            699999999999999999999   999999999974

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.13  E-value=5e-10  Score=103.28  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH------------cCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDK------------RGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~------------~g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|++            .|++|+|||+..
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            4799999999999999999999            899999999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.12  E-value=3.7e-10  Score=106.14  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++|.+|+||||..
T Consensus        19 ~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~   51 (621)
T 2h88_A           19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF   51 (621)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            799999999999999999999999999999974

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.11  E-value=8.1e-10  Score=104.36  Aligned_cols=33  Identities=33%  Similarity=0.577  Sum_probs=31.4

Q ss_pred             CcEEEECcCHHHHHHHHHHh---H-cCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLD---K-RGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~---~-~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+   + +|.+|+||||..
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            89999999999999999999   6 899999999975

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.11  E-value=1.1e-09  Score=102.68  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++|  .+|+||||..
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~   40 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            79999999999999999999999  9999999974

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.10  E-value=3.9e-10  Score=103.09  Aligned_cols=41  Identities=27%  Similarity=0.474  Sum_probs=36.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|++.|++|+|||+.. ..||.+.
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~-~~GG~~~   65 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRS-TYGGTCL   65 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SSSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCccc
Confidence            4899999999999999999999999999999874 4777653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.09  E-value=2.3e-09  Score=101.56  Aligned_cols=52  Identities=12%  Similarity=0.013  Sum_probs=43.3

Q ss_pred             CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc------cceeecCEEEEcC
Q 047483          198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV------KLRGQFDVVVIAH  252 (253)
Q Consensus       198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~------~~~~~ad~VV~At  252 (253)
                      ..++..+.+.|.+.   ++|++|++|++|+++++++.|++.+      +.+++||+||+|.
T Consensus       397 ~gG~~~l~~~La~~---l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tv  454 (662)
T 2z3y_A          397 RNGYSCVPVALAEG---LDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTL  454 (662)
T ss_dssp             TTCTTHHHHHHTTT---CEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECC
T ss_pred             cCcHHHHHHHHHhc---CceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECC
Confidence            45678888887763   6899999999999999999887654      5689999999985

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.09  E-value=3.3e-10  Score=102.98  Aligned_cols=114  Identities=12%  Similarity=0.105  Sum_probs=63.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .||+|||||++|+++|+.|+++  |.+|+|||+++. .+.       ...++.+..+..+.                   
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~-~~~-------~~~gl~~~~~g~~~-------------------   56 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR-ISY-------GGCGIPYYVSGEVS-------------------   56 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCc-ccc-------cccccchhhcCCCC-------------------
Confidence            6999999999999999999998  999999999853 210       00000000000000                   


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe-Ccc--ceeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE-NVK--LRGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~-~~~--~~~~a  245 (253)
                                  ....+.+.+..         +....+.+.++. +++++++++|++++.++..+.+.. .++  ..+.+
T Consensus        57 ------------~~~~~~~~~~~---------~~~~~~~~~~~~-gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~  114 (472)
T 3iwa_A           57 ------------NIESLQATPYN---------VVRDPEFFRINK-DVEALVETRAHAIDRAAHTVEIENLRTGERRTLKY  114 (472)
T ss_dssp             ----------------------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ------------chHHhccccch---------hccCHHHHhhhc-CcEEEECCEEEEEECCCCEEEEeecCCCCEEEEEC
Confidence                        00000010000         112222222222 589999999999998888888764 223  37899


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|||
T Consensus       115 d~lviAtG  122 (472)
T 3iwa_A          115 DKLVLALG  122 (472)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeCC
Confidence            99999998

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.08  E-value=1.6e-10  Score=105.22  Aligned_cols=39  Identities=33%  Similarity=0.551  Sum_probs=35.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|+.. ..||.+
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~-~~GG~~   44 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG-KLGGTC   44 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SSSHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CcCCcc
Confidence            799999999999999999999999999999964 366654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.08  E-value=4.3e-10  Score=104.12  Aligned_cols=33  Identities=39%  Similarity=0.499  Sum_probs=31.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++||+|||||++||++|+.|++ |.+|+||||..
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~   40 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP   40 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence            3799999999999999999999 99999999985

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.08  E-value=1.2e-10  Score=101.96  Aligned_cols=36  Identities=28%  Similarity=0.508  Sum_probs=33.2

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...+||+|||||++|+++|++|+++|++|+|||+..
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            345899999999999999999999999999999975

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.07  E-value=4.9e-10  Score=101.74  Aligned_cols=41  Identities=34%  Similarity=0.552  Sum_probs=36.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|++.|++|+|+|+++ ..||.+.
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~-~~GG~~~   46 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG-ALGGTCL   46 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-SSCCSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC-Ccccccc
Confidence            4899999999999999999999999999999985 3777653

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.07  E-value=1.1e-09  Score=102.49  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++|.+|+||||..
T Consensus         8 ~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~   40 (588)
T 2wdq_A            8 FDAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (588)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            799999999999999999999999999999975

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.06  E-value=5.6e-10  Score=104.26  Aligned_cols=109  Identities=10%  Similarity=0.189  Sum_probs=70.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ..||+|||||++|+++|+.|++.  |.+|+|||++.. .+       +..                ..+...+..     
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~-~~-------~~~----------------~~lp~~~~g-----   86 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY-IS-------FAN----------------CGLPYYIGG-----   86 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC-SS-------BCG----------------GGHHHHHTT-----
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC-cc-------ccC----------------CCCchhhcC-----
Confidence            37999999999999999999998  899999999753 22       000                000000000     


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe-Cccc--eee
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE-NVKL--RGQ  244 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~-~~~~--~~~  244 (253)
                                      .+.+...     .    +....+.+.++. +++++++++|++++.++..+.+.. .++.  .+.
T Consensus        87 ----------------~~~~~~~-----~----~~~~~~~~~~~~-gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~  140 (588)
T 3ics_A           87 ----------------VITERQK-----L----LVQTVERMSKRF-NLDIRVLSEVVKINKEEKTITIKNVTTNETYNEA  140 (588)
T ss_dssp             ----------------SSCCGGG-----G----BSSCHHHHHHHT-TCEEECSEEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ----------------cCCChHH-----h----hccCHHHHHHhc-CcEEEECCEEEEEECCCCEEEEeecCCCCEEEEe
Confidence                            0000000     0    011122233333 589999999999998888888764 2333  789


Q ss_pred             cCEEEEcCC
Q 047483          245 FDVVVIAHN  253 (253)
Q Consensus       245 ad~VV~AtG  253 (253)
                      +|.||+|||
T Consensus       141 ~d~lviAtG  149 (588)
T 3ics_A          141 YDVLILSPG  149 (588)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999998

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.06  E-value=7.3e-11  Score=107.28  Aligned_cols=41  Identities=32%  Similarity=0.351  Sum_probs=36.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.. ..||.+.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~-~~GG~~~   44 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG-ELGGNCL   44 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTS-SSSHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCC-CCCCccc
Confidence            3799999999999999999999999999999764 4787654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.05  E-value=4e-10  Score=102.78  Aligned_cols=40  Identities=28%  Similarity=0.533  Sum_probs=35.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      .+||+|||||++|+++|+.|++.|++|+|+|++. ..||.+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~~GG~~   45 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK-TLGGVC   45 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-CSSHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCCce
Confidence            3799999999999999999999999999999964 366644

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.05  E-value=5.6e-10  Score=101.53  Aligned_cols=39  Identities=26%  Similarity=0.457  Sum_probs=34.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ++||+|||||++|+++|+.|++.|++|+|+|++. ..||.
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~-~~gG~   41 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK-GKEGK   41 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB-CTTSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC-ccCCC
Confidence            4899999999999999999999999999999985 34544

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.04  E-value=4.5e-10  Score=101.97  Aligned_cols=41  Identities=32%  Similarity=0.544  Sum_probs=36.2

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      ..+||+|||||++|+++|+.|++.|++|+|||++ . .||.+.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~-~GG~~~   43 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-T-IGGTCV   43 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-S-TTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-C-CCcccc
Confidence            3489999999999999999999999999999997 3 677653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.03  E-value=5.5e-09  Score=101.28  Aligned_cols=52  Identities=12%  Similarity=0.013  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc------cceeecCEEEEcC
Q 047483          198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV------KLRGQFDVVVIAH  252 (253)
Q Consensus       198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~------~~~~~ad~VV~At  252 (253)
                      ..++..+.+.|.+.   +.|++|++|++|++.+++|.|++.+      +..++||+||+|.
T Consensus       568 ~gG~~~L~~aLa~~---l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTv  625 (852)
T 2xag_A          568 RNGYSCVPVALAEG---LDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTL  625 (852)
T ss_dssp             TTCTTHHHHHHTTT---CCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECC
T ss_pred             cCcHHHHHHHHHhC---CCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECC
Confidence            45788888888764   6899999999999999999887544      5679999999985

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.03  E-value=8.1e-10  Score=99.94  Aligned_cols=107  Identities=13%  Similarity=0.198  Sum_probs=68.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .||+|||||++|+++|+.|+++  |.+|+|||++.. .|...       .+.      ..+.          ..      
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~-~g~~~-------~~~------~~~~----------~~------   52 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQAT-VGYLS-------GGL------SAYF----------NH------   52 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC-CSSCC-------C------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC-CcccC-------ccc------hhhh----------cC------
Confidence            5999999999999999999998  899999999753 32100       000      0000          00      


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEE-eCccceeecCE
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLS-ENVKLRGQFDV  247 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~-~~~~~~~~ad~  247 (253)
                                     .... .... .+    ...+.+    ++. +++++++++|++++..+..|.+. .+++..+.+|.
T Consensus        53 ---------------~~~~-~~~~-~~----~~~~~~----~~~-gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~  106 (452)
T 3oc4_A           53 ---------------TINE-LHEA-RY----ITEEEL----RRQ-KIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDK  106 (452)
T ss_dssp             -------------------------CC----CCHHHH----HHT-TEEEECSCEEEEEETTTTEEEEEETTEEEEEECSE
T ss_pred             ---------------CCCC-HHHh-hc----CCHHHH----HHC-CCEEEECCEEEEEECCCCEEEEEecCceEEEEcCE
Confidence                           0000 0000 00    012222    222 58999999999999888888775 33556899999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|||
T Consensus       107 lviAtG  112 (452)
T 3oc4_A          107 LILATG  112 (452)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999998

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.02  E-value=7.7e-10  Score=100.35  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=34.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|+.  ..||.+
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~--~~gG~~   41 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK--YWGGVC   41 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--CTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC--CCCCcc
Confidence            79999999999999999999999999999997  256544

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.02  E-value=2e-09  Score=96.23  Aligned_cols=40  Identities=8%  Similarity=-0.071  Sum_probs=34.6

Q ss_pred             CcEEEcCeEEEEEEEeCCeE-EEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMW-HLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~-~v~~~~~~~~~ad~VV~AtG  253 (253)
                      |+++++++.|++|+.+++.+ .+.++++..+.||.||+|+|
T Consensus       208 GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G  248 (415)
T 3lxd_A          208 GVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIG  248 (415)
T ss_dssp             TCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSC
T ss_pred             CCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCC
Confidence            69999999999998876655 56677878999999999998

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.01  E-value=1.9e-09  Score=101.93  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc------CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR------GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~------g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++      |.+|+||||..
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~   61 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS   61 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence            8999999999999999999998      99999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.01  E-value=1.6e-10  Score=102.66  Aligned_cols=105  Identities=13%  Similarity=0.234  Sum_probs=68.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +.+|+|||||++|+++|..|.+.+.+|+|||+.+. .+              |+         ...+...+...      
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~-~~--------------y~---------~~~l~~~l~g~------   58 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKY-LP--------------YY---------RPRLNEIIAKN------   58 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSS-CC--------------BC---------GGGHHHHHHSC------
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCC-CC--------------cc---------cChhhHHHcCC------
Confidence            37899999999999999999778999999999753 11              10         01111111110      


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                     ..  ....   .  ....+++    ++. +++++++++|++|+.++..  |+++++..+.+|.||
T Consensus        59 ---------------~~--~~~l---~--~~~~~~~----~~~-~i~~~~~~~V~~id~~~~~--v~~~~g~~~~yd~lv  109 (385)
T 3klj_A           59 ---------------KS--IDDI---L--IKKNDWY----EKN-NIKVITSEFATSIDPNNKL--VTLKSGEKIKYEKLI  109 (385)
T ss_dssp             ---------------CC--GGGT---B--SSCHHHH----HHT-TCEEECSCCEEEEETTTTE--EEETTSCEEECSEEE
T ss_pred             ---------------CC--HHHc---c--CCCHHHH----HHC-CCEEEeCCEEEEEECCCCE--EEECCCCEEECCEEE
Confidence                           00  0000   0  0112222    222 6999999999999877664  445677789999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|||
T Consensus       110 lAtG  113 (385)
T 3klj_A          110 IASG  113 (385)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            9998

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.01  E-value=4.2e-10  Score=99.43  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=31.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNH  124 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~  124 (253)
                      ||+|||||++||++|+.|+++  |++|+|||++..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            899999999999999999999  999999999753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.00  E-value=1.5e-09  Score=98.03  Aligned_cols=33  Identities=33%  Similarity=0.538  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      +||+|||||++|+++|+.|++.  |.+|+|||+..
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~   38 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATE   38 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            6999999999999999999998  88999999975

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.00  E-value=7.3e-10  Score=102.79  Aligned_cols=108  Identities=12%  Similarity=0.184  Sum_probs=68.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .||+|||||++|+++|+.|+++  |.+|+|||+.+. .+.              ..         ..+...+..      
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~-~~~--------------~~---------~~l~~~~~~------   51 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEY-VSF--------------AN---------CGLPYHISG------   51 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSC-SSB--------------CG---------GGHHHHHTS------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCC-ccc--------------cc---------cCchHHhcC------
Confidence            4899999999999999999998  899999999753 210              00         000000000      


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe---Cccceeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE---NVKLRGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~---~~~~~~~a  245 (253)
                                     ...+     .....    ....+.+.++. +++++++++|++|+.++..+.+..   .....+.+
T Consensus        52 ---------------~~~~-----~~~~~----~~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~  106 (565)
T 3ntd_A           52 ---------------EIAQ-----RSALV----LQTPESFKARF-NVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESY  106 (565)
T ss_dssp             ---------------SSCC-----GGGGB----CCCHHHHHHHH-CCEEETTEEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ---------------CcCC-----hHHhh----ccCHHHHHHhc-CcEEEECCEEEEEECCCCEEEEEecCCCCeEEEEC
Confidence                           0000     00000    11112222323 589999999999998888887764   22247899


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|||
T Consensus       107 d~lviAtG  114 (565)
T 3ntd_A          107 DTLLLSPG  114 (565)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999998

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.00  E-value=9.3e-10  Score=97.33  Aligned_cols=74  Identities=23%  Similarity=0.313  Sum_probs=58.3

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC-CCCCCCCccccccC--------CCccccccccceeccCchhHHHH
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG-NHGLGGRMGTRMIG--------PQPLIFDHAAQFFTVNDSRFHEL  159 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~-~~~~gg~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      ...||+|||||++||++|+.|.++|++|+|||++ . .+||++.+....        ..+..++.|..++......+.++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~-~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~  121 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANAN-RVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLAL  121 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSS-CCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccc-ccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHH
Confidence            3479999999999999999999999999999998 5 589988765432        23566777877776656666667


Q ss_pred             HHhh
Q 047483          160 VDGW  163 (253)
Q Consensus       160 ~~~~  163 (253)
                      ++++
T Consensus       122 ~~~l  125 (376)
T 2e1m_A          122 IDKL  125 (376)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            6663

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.00  E-value=6.7e-10  Score=99.01  Aligned_cols=72  Identities=17%  Similarity=0.280  Sum_probs=53.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCCCccccccCCCcccc-ccccceeccCchhHHHHHH
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGGRMGTRMIGPQPLIF-DHAAQFFTVNDSRFHELVD  161 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  161 (253)
                      ..+||+|||||++||++|+.|+++ |++|+|||++. ..||++.+...+..+..+ +.|.+++....+.+.++++
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~-~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~   79 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP-HIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVR   79 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSS-SSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCC-CCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHH
Confidence            358999999999999999999999 99999999985 599998776543134444 3666666544444444443

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.00  E-value=1e-09  Score=100.06  Aligned_cols=108  Identities=14%  Similarity=0.163  Sum_probs=68.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .||+|||||++|+++|+.|++.  |.+|+|||+... .++..         +              .+...+..     .
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~-~~~~~---------~--------------~~~~~~~~-----~   87 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI-YSYAQ---------C--------------GLPYVISG-----A   87 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSC-CSBCG---------G--------------GHHHHHTT-----S
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC-CCCCC---------C--------------CcchhhcC-----C
Confidence            5999999999999999999996  899999999753 21100         0              00000000     0


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe-Cccc--eeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE-NVKL--RGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~-~~~~--~~~a  245 (253)
                      ...+..                 .   .     ....+.+.+. .+++++++++|+.|+.+++.+.+.. .++.  .+.+
T Consensus        88 ~~~~~~-----------------l---~-----~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~  141 (480)
T 3cgb_A           88 IASTEK-----------------L---I-----ARNVKTFRDK-YGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY  141 (480)
T ss_dssp             SSCGGG-----------------G---B-----SSCHHHHHHT-TCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cCCHHH-----------------h---h-----hcCHHHHHhh-cCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEc
Confidence            000000                 0   0     0001222232 2599999999999988777787764 3344  6999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|||
T Consensus       142 d~lviAtG  149 (480)
T 3cgb_A          142 DRLLIATG  149 (480)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999998

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.99  E-value=7.6e-10  Score=101.35  Aligned_cols=104  Identities=22%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +||+|||||++|+++|+.|++. ++|+|||++.. .||.+.....           ..+.                    
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~-~GG~~~~~~~-----------~~~g--------------------  155 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGW-LGGDMWLKGI-----------KQEG--------------------  155 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSS-SSCSGGGTCS-----------EETT--------------------
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCC-CCCeeecccc-----------ccCC--------------------
Confidence            6999999999999999999999 99999999853 6654421100           0000                    


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhc-CCcEEEcCeEEEEEEEeCCeEEEEe-Cccc--eeecC
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT-SMVSIVRPCWISNLQPFNGMWHLSE-NVKL--RGQFD  246 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~gv~i~~~t~V~~i~~~~~~~~v~~-~~~~--~~~ad  246 (253)
                                       +++         ...++...+.+++ .++++++++.|.+|..++..+.+.. +++.  .+.+|
T Consensus       156 -----------------~~~---------~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d  209 (493)
T 1y56_A          156 -----------------FNK---------DSRKVVEELVGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAK  209 (493)
T ss_dssp             -----------------TTE---------EHHHHHHHHHHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEES
T ss_pred             -----------------CCC---------CHHHHHHHHHHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECC
Confidence                             000         1133334444332 3689999999999988777776543 2332  68999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|||
T Consensus       210 ~lvlAtG  216 (493)
T 1y56_A          210 RVVLATG  216 (493)
T ss_dssp             CEEECCC
T ss_pred             EEEECCC
Confidence            9999998

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.99  E-value=1.6e-09  Score=97.47  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=31.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|..|++.|.  +|+|+|+..
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~   39 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   39 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCC
Confidence            4799999999999999999999998  899999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.99  E-value=1e-09  Score=99.80  Aligned_cols=39  Identities=28%  Similarity=0.544  Sum_probs=35.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.|++.|++|+|||+++ ..||.+
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~~GG~~   45 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNE-TLGGTC   45 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS-SSSHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CcCCcc
Confidence            799999999999999999999999999999975 377765

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.99  E-value=8.9e-10  Score=98.19  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~  123 (253)
                      .||+|||||++|+++|+.|++   .|++|+|||++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            489999999999999999999   899999999975

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.98  E-value=1.2e-10  Score=101.67  Aligned_cols=32  Identities=31%  Similarity=0.520  Sum_probs=30.6

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC------CeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG------VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g------~~v~~~e~~~  123 (253)
                      ||+|||||++|+++|++|+++|      .+|+|||+..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            8999999999999999999998      9999999974

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.98  E-value=6.3e-09  Score=92.67  Aligned_cols=40  Identities=8%  Similarity=-0.065  Sum_probs=34.7

Q ss_pred             CcEEEcCeEEEEEEEeCCeE-EEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMW-HLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~-~v~~~~~~~~~ad~VV~AtG  253 (253)
                      |++++++++|++++.+++.+ .+.++++..+.||.||+|+|
T Consensus       198 GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G  238 (404)
T 3fg2_P          198 GIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVG  238 (404)
T ss_dssp             TCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCC
T ss_pred             CcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcC
Confidence            69999999999998876664 46677888999999999998

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.97  E-value=1.2e-09  Score=99.15  Aligned_cols=40  Identities=28%  Similarity=0.496  Sum_probs=35.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+ ..||.+.
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~~GG~~~   42 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRG-ALGGTCL   42 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SSSHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC-CcCCcCC
Confidence            799999999999999999999999999999974 3777653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.97  E-value=3.4e-09  Score=95.84  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=34.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|+.  ..||.+
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~--~~gG~~   41 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG--NLGGVC   41 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC--CCCCcC
Confidence            79999999999999999999999999999997  366654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.95  E-value=2.4e-09  Score=97.55  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=35.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|++.|++|+|||++.  .||.+.
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~--~GG~~~   50 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA--LGGTCV   50 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC--TTHHHH
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC--cCCcCc
Confidence            4799999999999999999999999999999973  677653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.94  E-value=2.2e-09  Score=98.27  Aligned_cols=38  Identities=34%  Similarity=0.559  Sum_probs=34.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc---CCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR---GVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~---g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.|++.   |++|+|||++.  .||.+
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~--~GG~~   43 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG--IGGAA   43 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC--TTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC--cCCcc
Confidence            7999999999999999999999   99999999974  67754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.93  E-value=2.8e-09  Score=97.04  Aligned_cols=38  Identities=34%  Similarity=0.534  Sum_probs=34.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|++  ..||.+
T Consensus        21 ~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~--~~GG~~   58 (478)
T 3dk9_A           21 YDYLVIGGGSGGLASARRAAELGARAAVVESH--KLGGTC   58 (478)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCcc
Confidence            89999999999999999999999999999986  367765

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.92  E-value=7.3e-10  Score=99.79  Aligned_cols=33  Identities=27%  Similarity=0.583  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~  123 (253)
                      .||+|||||++|+++|+.|++   .|++|+|||+++
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~   40 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND   40 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence            699999999999999999999   899999999874

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.91  E-value=6.2e-09  Score=92.02  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|++.|  .+|+|+|++.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            479999999999999999999998  5799999863

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.91  E-value=2.5e-09  Score=94.90  Aligned_cols=71  Identities=15%  Similarity=0.321  Sum_probs=54.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCcccc-ccccceeccCchhHHHHHHh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF-DHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  162 (253)
                      .||+|||||++|+++|+.|+++|++|+|+|++. ..||++.+......++.+ +.|.+++....+.+.+++++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~-~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~   75 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD-HIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNK   75 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS-SSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC-CcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHH
Confidence            699999999999999999999999999999985 589988765553335544 66777766555555555543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.90  E-value=1.6e-09  Score=99.82  Aligned_cols=43  Identities=28%  Similarity=0.304  Sum_probs=37.2

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      +..+||+|||||++|+++|+.|++.|++|+|||++. ..||.+.
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~-~~GG~~~   83 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP-FLGGSCP   83 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SSSCHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCCccc
Confidence            345899999999999999999999999999999975 3677553

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.90  E-value=3.1e-09  Score=96.12  Aligned_cols=39  Identities=28%  Similarity=0.478  Sum_probs=35.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|++. ..||.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~-~~GG~~   40 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEK-ALGGTC   40 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SSSHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCC-CCCCcc
Confidence            699999999999999999999999999999974 377654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.90  E-value=6.7e-09  Score=94.93  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH-cCCeEEEEc
Q 047483           90 DPHVGIIGGGMAGLACALSLDK-RGVKSTVFD  120 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e  120 (253)
                      .+||+|||||++|+++|+.|++ .|++|+|+|
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            3799999999999999999999 999999999

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.89  E-value=3.3e-09  Score=97.74  Aligned_cols=35  Identities=40%  Similarity=0.459  Sum_probs=32.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+++
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            34899999999999999999999999999999853

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.88  E-value=1.7e-08  Score=91.19  Aligned_cols=93  Identities=15%  Similarity=0.144  Sum_probs=70.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+. ..        +.              .++                
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~-~l--------~~--------------~~~----------------  208 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR-IL--------PT--------------MDL----------------  208 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SC--------TT--------------SCH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc-cc--------cc--------------cCH----------------
Confidence            5899999999999999999999999999998742 10        00              000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                   .+.+ +.+.+.+.  |++++++++|++++.+++.+.+.++++..+.+|.||
T Consensus       209 -----------------------------~~~~~l~~~l~~~--Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv  257 (455)
T 2yqu_A          209 -----------------------------EVSRAAERVFKKQ--GLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVL  257 (455)
T ss_dssp             -----------------------------HHHHHHHHHHHHH--TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEE
T ss_pred             -----------------------------HHHHHHHHHHHHC--CCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEE
Confidence                                         0111 22223232  699999999999998888888877677789999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       258 ~A~G  261 (455)
T 2yqu_A          258 VAVG  261 (455)
T ss_dssp             ECSC
T ss_pred             ECcC
Confidence            9998

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.88  E-value=2.7e-09  Score=96.82  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=35.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||+.  ..||.+.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~--~~GG~~~   44 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF--RYGGTCV   44 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS--CTTHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC--CCCCccc
Confidence            379999999999999999999999999999994  3777653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.87  E-value=3.4e-09  Score=94.42  Aligned_cols=70  Identities=20%  Similarity=0.269  Sum_probs=51.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccc-cccccceeccCchhHHHHHH
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLI-FDHAAQFFTVNDSRFHELVD  161 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  161 (253)
                      .+||+|||||++||++|+.|+++|++|+|+|++. ..||++.+... ..++. ++.|.+.+......+.++++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~-~~GG~~~~~~~-~~G~~~~~~G~~~~~~~~~~~~~~~~   99 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP-HIGGNAYDCYD-DAGVLIHPYGPHIFHTNSKDVFEYLS   99 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSSGGGCCEEC-TTSCEECTTSCCCCEESCHHHHHHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccC-CCCCccceeec-cCCceEeecCCcccCCChHHHHHHHH
Confidence            4799999999999999999999999999999985 58888765432 22343 36666666544444444443

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.87  E-value=3.4e-09  Score=97.04  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH-cCCeEEEEc
Q 047483           90 DPHVGIIGGGMAGLACALSLDK-RGVKSTVFD  120 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e  120 (253)
                      .+||+|||||++|+++|+.|++ .|++|+|||
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            4799999999999999999999 999999999

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.86  E-value=2.2e-08  Score=88.46  Aligned_cols=96  Identities=16%  Similarity=0.075  Sum_probs=71.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+++|||+|+.|+.+|..|.+.|.+|+|+|+.+. ...+.                  +   ++               
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~~~~~------------------~---~~---------------  187 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQ-VMPGL------------------L---HP---------------  187 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SSTTT------------------S---CH---------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc-hhhcc------------------c---CH---------------
Confidence            36899999999999999999999999999998642 10000                  0   00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                    .+...+...+++ .|++++++++|++++.+++.+.+.++++..+.+|.||
T Consensus       188 ------------------------------~~~~~l~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv  236 (384)
T 2v3a_A          188 ------------------------------AAAKAVQAGLEG-LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVV  236 (384)
T ss_dssp             ------------------------------HHHHHHHHHHHT-TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEE
T ss_pred             ------------------------------HHHHHHHHHHHH-cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEE
Confidence                                          011222222222 2699999999999998888888887777889999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       237 ~a~G  240 (384)
T 2v3a_A          237 SAVG  240 (384)
T ss_dssp             ECSC
T ss_pred             ECcC
Confidence            9998

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.86  E-value=5.5e-09  Score=94.41  Aligned_cols=107  Identities=8%  Similarity=0.075  Sum_probs=68.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      +||+|||||++|+++|+.|++.  |.+|+|+|+... .+..         ..              .+...+..     .
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~-~~~~---------~~--------------~~~~~~~g-----~   51 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN-ISFL---------SC--------------GIALYLGK-----E   51 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC-CCBC---------GG--------------GHHHHHTT-----C
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC-CCcc---------cc--------------cchhhhcC-----C
Confidence            4899999999999999999998  999999999752 2110         00              00000000     0


Q ss_pred             cc--cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC---cccee
Q 047483          169 VR--PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN---VKLRG  243 (253)
Q Consensus       169 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~---~~~~~  243 (253)
                      ..  .+..                 .   .  ..+...+    ++. +++++++++|..++.+++.+.+...   .+..+
T Consensus        52 ~~~~~~~~-----------------~---~--~~~~~~~----~~~-gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~  104 (452)
T 2cdu_A           52 IKNNDPRG-----------------L---F--YSSPEEL----SNL-GANVQMRHQVTNVDPETKTIKVKDLITNEEKTE  104 (452)
T ss_dssp             BGGGCGGG-----------------G---B--SCCHHHH----HHT-TCEEEESEEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred             cccCCHHH-----------------h---h--hcCHHHH----HHc-CCEEEeCCEEEEEEcCCCEEEEEecCCCceEEE
Confidence            00  0000                 0   0  0112222    222 5899999999999887777777541   14579


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      ++|.||+|||
T Consensus       105 ~~d~lviAtG  114 (452)
T 2cdu_A          105 AYDKLIMTTG  114 (452)
T ss_dssp             ECSEEEECCC
T ss_pred             ECCEEEEccC
Confidence            9999999998

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.86  E-value=9.4e-09  Score=93.29  Aligned_cols=40  Identities=30%  Similarity=0.415  Sum_probs=35.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|++.|++|+|||++.  .||.+.
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~--~GG~~~   43 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA--LGGTCV   43 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--TTHHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC--CCCcCc
Confidence            4799999999999999999999999999999973  677654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.85  E-value=1.5e-09  Score=95.66  Aligned_cols=32  Identities=31%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||+|||||++|+++|..|++.| +|+|+|+..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~   40 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEP   40 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCC
Confidence            69999999999999999999999 999999974

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.85  E-value=6.2e-09  Score=94.10  Aligned_cols=40  Identities=28%  Similarity=0.377  Sum_probs=35.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|++.|++|+|+|++.  .||.+.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~--~GG~~~   43 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE--LGGTCV   43 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC--TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC--CCCccc
Confidence            3799999999999999999999999999999973  677654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.84  E-value=7.8e-09  Score=93.27  Aligned_cols=106  Identities=13%  Similarity=0.144  Sum_probs=67.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ||+|||||++|+++|+.|++.  |.+|+|+|+... .|..         .+              .+...+..     ..
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~-~~~~---------~~--------------~~~~~~~~-----~~   52 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF-ISFL---------SA--------------GMQLYLEG-----KV   52 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS-SSBC---------GG--------------GHHHHHTT-----SS
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCc-cCcc---------cc--------------cchhhhcC-----cc
Confidence            899999999999999999998  999999999753 2210         00              00000000     00


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe-Cccc--eeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE-NVKL--RGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~-~~~~--~~~ad  246 (253)
                      ..+.                 ..   .  ......+    ++. +++++.++.|+.+..+++.+.+.. .++.  .+++|
T Consensus        53 ~~~~-----------------~~---~--~~~~~~~----~~~-gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d  105 (447)
T 1nhp_A           53 KDVN-----------------SV---R--YMTGEKM----ESR-GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYD  105 (447)
T ss_dssp             CCGG-----------------GS---B--SCCHHHH----HHT-TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECS
T ss_pred             CCHH-----------------Hh---h--cCCHHHH----HHC-CCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCC
Confidence            0000                 00   0  0112222    223 699999999999988777777754 2233  48999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|||
T Consensus       106 ~lviAtG  112 (447)
T 1nhp_A          106 KLIISPG  112 (447)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999998

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.84  E-value=2.9e-09  Score=101.38  Aligned_cols=41  Identities=39%  Similarity=0.677  Sum_probs=36.0

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+||+|||||++||++|+.|+++|++|+|||++. ..||.+
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~-~~GG~~  430 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGR-DLGGRV  430 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSCTHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCEe
Confidence            45799999999999999999999999999999975 366653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.83  E-value=5.6e-09  Score=93.24  Aligned_cols=33  Identities=30%  Similarity=0.574  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCe--EEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVK--STVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~--v~~~e~~~  123 (253)
                      .||+|||||++|+++|+.|+++|++  |+|+|+.+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~   37 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEP   37 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCC
Confidence            4899999999999999999999987  99999875

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.7e-09  Score=93.53  Aligned_cols=41  Identities=27%  Similarity=0.414  Sum_probs=35.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH--cCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDK--RGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~--~g~~v~~~e~~~~~~gg~~~  131 (253)
                      ++||+||||||+||+||++|++  .|++|+||||+. .+||.+.
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~-~~GG~~~  107 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV-APGGGSW  107 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS-SCCTTTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC-CCCceEE
Confidence            4799999999999999999986  499999999985 4777653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.82  E-value=1.3e-08  Score=92.78  Aligned_cols=33  Identities=39%  Similarity=0.571  Sum_probs=31.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+||+|||||++|+++|+.|++.|++|+|+||.
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            489999999999999999999999999999963

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.82  E-value=1.5e-08  Score=91.34  Aligned_cols=107  Identities=7%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +|+|||||++|+++|..|++.|  .+|+|+|++....+++.                        .+...+..     ..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~------------------------~l~~~~~~-----~~   52 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC------------------------ALPYVIGE-----VV   52 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG------------------------GHHHHHTT-----SS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc------------------------hhHHHHcC-----Cc
Confidence            6999999999999999999987  57999998743111111                        00000100     00


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC---ccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN---VKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~---~~~~~~ad  246 (253)
                      ....                ...     ......+    .++. +++++.+++|+.|+.....+.+...   ++..+.+|
T Consensus        53 ~~~~----------------~~~-----~~~~~~~----~~~~-~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd  106 (437)
T 4eqs_A           53 EDRR----------------YAL-----AYTPEKF----YDRK-QITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYD  106 (437)
T ss_dssp             CCGG----------------GTB-----CCCHHHH----HHHH-CCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECS
T ss_pred             cchh----------------hhh-----hcCHHHH----HHhc-CCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcC
Confidence            0000                000     0011222    2222 5899999999999887777666532   33468999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      +||+|||
T Consensus       107 ~lVIATG  113 (437)
T 4eqs_A          107 KLILSPG  113 (437)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999998

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.82  E-value=1.3e-08  Score=92.94  Aligned_cols=33  Identities=39%  Similarity=0.522  Sum_probs=31.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+||+|||||++|+++|+.|++.|++|+|+||.
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            389999999999999999999999999999973

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.81  E-value=1.1e-08  Score=91.41  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|+.|++.|.  +|+|+|+..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   42 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   42 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCC
Confidence            4799999999999999999999997  599999874

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.80  E-value=5.8e-08  Score=88.08  Aligned_cols=94  Identities=16%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+. ....                      .++                
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~----------------------~~~----------------  210 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPE-ILPQ----------------------GDP----------------  210 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTT----------------------SCH----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCc-cccc----------------------cCH----------------
Confidence            5899999999999999999999999999998742 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC-c--cc--eeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN-V--KL--RGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~-~--~~--~~~a  245 (253)
                                                   .+.+.+...+++. |++++++++|++++.+++.+.+..+ +  +.  .+.+
T Consensus       211 -----------------------------~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~  260 (464)
T 2eq6_A          211 -----------------------------ETAALLRRALEKE-GIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVV  260 (464)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEE
T ss_pred             -----------------------------HHHHHHHHHHHhc-CCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEc
Confidence                                         0122222222222 6999999999999988777776654 4  44  7999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       261 D~vv~a~G  268 (464)
T 2eq6_A          261 DKVLVAVG  268 (464)
T ss_dssp             SEEEECSC
T ss_pred             CEEEECCC
Confidence            99999998

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.79  E-value=1.6e-08  Score=91.54  Aligned_cols=39  Identities=28%  Similarity=0.503  Sum_probs=35.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|+.  ..||.+.
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~--~~GG~~~   44 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ--ALGGTCL   44 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS--CTTHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEccC--CCCCcCC
Confidence            79999999999999999999999999999994  3777664

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.79  E-value=7.6e-09  Score=91.17  Aligned_cols=59  Identities=29%  Similarity=0.379  Sum_probs=45.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccc-cccceeccC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFD-HAAQFFTVN  152 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~  152 (253)
                      +||+|||||++||++|+.|+++|++|+|+|++. ..||++.+....  +..++ .|.+++...
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~-~~GG~~~~~~~~--g~~~~~~G~~~~~~~   61 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN-HIGGNAYTEDCE--GIQIHKYGAHIFHTN   61 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS-SSSGGGCEEEET--TEEEETTSCCCEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCC-CCCcceEeeccC--CceeeccCCceecCC
Confidence            589999999999999999999999999999985 588887654432  34442 555555443

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.78  E-value=2.9e-09  Score=95.73  Aligned_cols=33  Identities=36%  Similarity=0.556  Sum_probs=29.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      .+|+|||||++|+++|+.|++.+  ++|+|+|+++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            47999999999999999999865  8999999874

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.76  E-value=6.9e-08  Score=87.24  Aligned_cols=93  Identities=15%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||..|+.+|..|++.|.+|+|+|+.+. ....            ++          +                
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~------------~~----------~----------------  208 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA-PLPS------------FD----------P----------------  208 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTT------------SC----------H----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc-hhhh------------hh----------H----------------
Confidence            5899999999999999999999999999998642 1000            00          0                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVV  248 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~V  248 (253)
                                                   .+.+ +.+.+.+.  |++++++++|++++.++++ +.+.++++..+.+|.|
T Consensus       209 -----------------------------~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~v  257 (450)
T 1ges_A          209 -----------------------------MISETLVEVMNAE--GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCL  257 (450)
T ss_dssp             -----------------------------HHHHHHHHHHHHH--SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEE
T ss_pred             -----------------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEE
Confidence                                         0112 22223232  6999999999999876543 6777777778999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       258 v~a~G  262 (450)
T 1ges_A          258 IWAIG  262 (450)
T ss_dssp             EECSC
T ss_pred             EECCC
Confidence            99998

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.75  E-value=2.5e-08  Score=98.18  Aligned_cols=41  Identities=29%  Similarity=0.487  Sum_probs=36.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      .+||+|||||++|+++|+.|++.|++|+|||+.. ..||++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~-~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERA-EAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCceec
Confidence            3799999999999999999999999999999975 3677664

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.75  E-value=5.2e-08  Score=88.38  Aligned_cols=94  Identities=26%  Similarity=0.211  Sum_probs=70.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||.+|+.+|..|++.|.+|+|+|+.+. ...          .  +          ++.+.             
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~-~l~----------~--~----------~~~~~-------------  210 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDR-LLF----------Q--F----------DPLLS-------------  210 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SST----------T--S----------CHHHH-------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc-ccc----------c--c----------CHHHH-------------
Confidence            5899999999999999999999999999998642 100          0  0          00000             


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccc-eeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKL-RGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~-~~~ad~VV  249 (253)
                                                     ..+.+.+.+.  |++++++++|++|+.+++++.+.++++. .+.+|.||
T Consensus       211 -------------------------------~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv  257 (463)
T 2r9z_A          211 -------------------------------ATLAENMHAQ--GIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVI  257 (463)
T ss_dssp             -------------------------------HHHHHHHHHT--TCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEE
T ss_pred             -------------------------------HHHHHHHHHC--CCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEE
Confidence                                           1122223222  6999999999999987777778777777 79999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       258 ~a~G  261 (463)
T 2r9z_A          258 WAVG  261 (463)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            9998

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.74  E-value=9.7e-08  Score=86.26  Aligned_cols=94  Identities=16%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+. ....            +          ++                
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~------------~----------~~----------------  211 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE-ILSG------------F----------EK----------------  211 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SSTT------------S----------CH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-cccc------------c----------CH----------------
Confidence            6899999999999999999999999999998742 1000            0          00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC---ccceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN---VKLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~---~~~~~~ad~  247 (253)
                                                   .+...+...+++. |++++++++|++++.+++.+.+...   ++..+.+|.
T Consensus       212 -----------------------------~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~  261 (455)
T 1ebd_A          212 -----------------------------QMAAIIKKRLKKK-GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADY  261 (455)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESE
T ss_pred             -----------------------------HHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCE
Confidence                                         0122222222222 6999999999999988777766543   446799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       262 vv~a~G  267 (455)
T 1ebd_A          262 VLVTVG  267 (455)
T ss_dssp             EEECSC
T ss_pred             EEECcC
Confidence            999998

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.73  E-value=8.8e-09  Score=94.36  Aligned_cols=39  Identities=28%  Similarity=0.481  Sum_probs=35.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~  131 (253)
                      +||+|||||++|+++|+.|++.|++|+|||++.  .||.+.
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~--~GG~c~   41 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR--LGGTCV   41 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS--TTHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC--cCcccc
Confidence            799999999999999999999999999999973  677654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.73  E-value=6.8e-09  Score=94.15  Aligned_cols=40  Identities=40%  Similarity=0.625  Sum_probs=35.3

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ..+||+|||||++||++|+.|++.|++|+|||+.. ..||.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~-~~GG~  160 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYD-RMGGL  160 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS-SCSTH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC-CCCCe
Confidence            34799999999999999999999999999999975 36664

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.73  E-value=1.5e-08  Score=92.65  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=35.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|++.  .||.+
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~--~GGtc   46 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA--YGTTC   46 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC--SSCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC--CCCcc
Confidence            799999999999999999999999999999963  77765

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.71  E-value=4.3e-08  Score=89.65  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=31.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      .+||+|||||++|+++|..|.++  |.+|+|||+..
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~   46 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   46 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            47999999999999999999887  89999999975

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.70  E-value=3.6e-08  Score=89.43  Aligned_cols=39  Identities=26%  Similarity=0.457  Sum_probs=35.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      .+||+|||||++|+++|..|++.|++|+|+|++.  .||.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~--~GG~~   44 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE--VGGVC   44 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--TTHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC--CCCCC
Confidence            3799999999999999999999999999999974  67654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.69  E-value=1.3e-08  Score=90.31  Aligned_cols=33  Identities=21%  Similarity=0.446  Sum_probs=29.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      .+|+|||||++|+++|..|++.+  .+|+|||+++
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            57999999999999999998875  6999999874

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.69  E-value=1.3e-07  Score=86.22  Aligned_cols=94  Identities=18%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||..|+.+|..|++.|.+|+|+|+.+. ....                      .++                
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-~l~~----------------------~~~----------------  226 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LMQG----------------------ADR----------------  226 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS-SSTT----------------------SCH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc-cccc----------------------cCH----------------
Confidence            6899999999999999999999999999998742 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc----cceeecC
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV----KLRGQFD  246 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~----~~~~~ad  246 (253)
                                                   .+...+...+++. |++++++++|++++.+++.+.+..++    +..+.+|
T Consensus       227 -----------------------------~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D  276 (482)
T 1ojt_A          227 -----------------------------DLVKVWQKQNEYR-FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYD  276 (482)
T ss_dssp             -----------------------------HHHHHHHHHHGGG-EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEES
T ss_pred             -----------------------------HHHHHHHHHHHhc-CCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcC
Confidence                                         0122222223332 69999999999999887776666554    5678999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       277 ~vv~a~G  283 (482)
T 1ojt_A          277 AVLVAAG  283 (482)
T ss_dssp             CEEECCC
T ss_pred             EEEECcC
Confidence            9999998

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.69  E-value=1e-07  Score=86.64  Aligned_cols=94  Identities=18%  Similarity=0.267  Sum_probs=67.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||.+|+.+|..|++.|.+|+|+|+.+. .....            +          +                
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~------------~----------~----------------  224 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ-IGASM------------D----------G----------------  224 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSSSS------------C----------H----------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc-ccccc------------C----------H----------------
Confidence            6899999999999999999999999999998742 11000            0          0                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEE--eCCeEEEEeC-----cccee
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQP--FNGMWHLSEN-----VKLRG  243 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~--~~~~~~v~~~-----~~~~~  243 (253)
                                                   .+...+...+++. |++++++++|++++.  +++.+.+..+     ++..+
T Consensus       225 -----------------------------~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~  274 (478)
T 1v59_A          225 -----------------------------EVAKATQKFLKKQ-GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENL  274 (478)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             -----------------------------HHHHHHHHHHHHC-CCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEE
Confidence                                         0122222222322 699999999999987  5555666543     34679


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      .+|.||+|+|
T Consensus       275 ~~D~vv~a~G  284 (478)
T 1v59_A          275 EAEVLLVAVG  284 (478)
T ss_dssp             EESEEEECSC
T ss_pred             ECCEEEECCC
Confidence            9999999998

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.68  E-value=8e-08  Score=88.12  Aligned_cols=34  Identities=18%  Similarity=0.416  Sum_probs=31.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +.+|||||||++|+.+|..|.+.+++|+|+|+++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            3689999999999999999999999999999874

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.68  E-value=2e-08  Score=88.69  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=31.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||+|||||++|+.+|+.|+++|++|+|+|++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            599999999999999999999999999999975

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.66  E-value=2e-07  Score=84.88  Aligned_cols=93  Identities=13%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||..|+.+|..|++.|.+|+++|+.+. ....                      .++.               
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-~l~~----------------------~d~~---------------  227 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGET-VLRK----------------------FDEC---------------  227 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS-SCTT----------------------SCHH---------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc-cccc----------------------cCHH---------------
Confidence            5899999999999999999999999999998742 1000                      0000               


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCCe--EEEEeCcc-ceeecC
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNGM--WHLSENVK-LRGQFD  246 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~--~~v~~~~~-~~~~ad  246 (253)
                                                    +. .+.+.|.+.  |++++++++|++|+.++++  +.+.++++ ..+.+|
T Consensus       228 ------------------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D  275 (479)
T 2hqm_A          228 ------------------------------IQNTITDHYVKE--GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVD  275 (479)
T ss_dssp             ------------------------------HHHHHHHHHHHH--TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEES
T ss_pred             ------------------------------HHHHHHHHHHhC--CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcC
Confidence                                          11 222223333  6999999999999876544  66777776 689999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       276 ~vv~a~G  282 (479)
T 2hqm_A          276 ELIWTIG  282 (479)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999998

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.66  E-value=8.7e-08  Score=87.95  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=31.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH-cCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDK-RGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e~~~  123 (253)
                      ++|+||||+|.+|+.+|.+|++ .|++|+|||++.
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~   51 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE   51 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence            4899999999999999999998 689999999975

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.64  E-value=6.2e-08  Score=91.87  Aligned_cols=39  Identities=36%  Similarity=0.714  Sum_probs=34.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||+... .||.
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~-~gg~  411 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE-IGGQ  411 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS-SCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC-CCCe
Confidence            47999999999999999999999999999999753 5654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.64  E-value=1.4e-07  Score=86.23  Aligned_cols=94  Identities=13%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|..|+.+|..|.+.|.+|+++|+.+. ....            +          ++                
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------~----------d~----------------  223 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH-VLPY------------E----------DA----------------  223 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSS-SSCC------------S----------SH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-cccc------------c----------CH----------------
Confidence            6899999999999999999999999999998742 1000            0          00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++. |++|+++++|++|+.+++++.+..+++..+.+|.||+
T Consensus       224 -----------------------------~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~  273 (499)
T 1xdi_A          224 -----------------------------DAALVLEESFAER-GVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALM  273 (499)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEE
T ss_pred             -----------------------------HHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEE
Confidence                                         0122222222222 6999999999999987767777777777899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       274 a~G  276 (499)
T 1xdi_A          274 TIG  276 (499)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.64  E-value=1.8e-07  Score=84.86  Aligned_cols=95  Identities=15%  Similarity=0.145  Sum_probs=68.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||..|+.+|..|++.|.+|+|+|+.+. ...+                  .+   ++                
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------------~~---~~----------------  220 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGH-VGGV------------------GI---DM----------------  220 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSCS------------------SC---CH----------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCc-cCCc------------------cc---CH----------------
Confidence            5899999999999999999999999999998742 1000                  00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEe-----Cccceee
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSE-----NVKLRGQ  244 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~-----~~~~~~~  244 (253)
                                                   .+...+...+++. |++++++++|++++.++++ +.+..     .++..+.
T Consensus       221 -----------------------------~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~  270 (474)
T 1zmd_A          221 -----------------------------EISKNFQRILQKQ-GFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVIT  270 (474)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEE
T ss_pred             -----------------------------HHHHHHHHHHHHC-CCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEE
Confidence                                         0122222222322 6999999999999887665 66652     4556799


Q ss_pred             cCEEEEcCC
Q 047483          245 FDVVVIAHN  253 (253)
Q Consensus       245 ad~VV~AtG  253 (253)
                      +|.||+|+|
T Consensus       271 ~D~vv~a~G  279 (474)
T 1zmd_A          271 CDVLLVCIG  279 (474)
T ss_dssp             ESEEEECSC
T ss_pred             cCEEEECcC
Confidence            999999998

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.64  E-value=3.2e-07  Score=82.39  Aligned_cols=96  Identities=20%  Similarity=0.192  Sum_probs=68.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++|+.+. ...+                  .+   .+               
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~-~l~~------------------~~---~~---------------  191 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR-VLER------------------VT---AP---------------  191 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-TTTT------------------TS---CH---------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc-cccc------------------hh---hH---------------
Confidence            46899999999999999999999999999998642 1000                  00   00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEE--eCCeE-EEEeCccceeecC
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQP--FNGMW-HLSENVKLRGQFD  246 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~--~~~~~-~v~~~~~~~~~ad  246 (253)
                                                    .+...+...+++. |++++++++|++|+.  +++.+ .+.++++..+.+|
T Consensus       192 ------------------------------~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D  240 (431)
T 1q1r_A          192 ------------------------------PVSAFYEHLHREA-GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPAD  240 (431)
T ss_dssp             ------------------------------HHHHHHHHHHHHH-TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECS
T ss_pred             ------------------------------HHHHHHHHHHHhC-CeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcC
Confidence                                          0112222222222 699999999999987  44444 5667777889999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       241 ~Vv~a~G  247 (431)
T 1q1r_A          241 LVIAGIG  247 (431)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999997

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.63  E-value=2.2e-07  Score=85.54  Aligned_cols=94  Identities=13%  Similarity=0.091  Sum_probs=68.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|..|+.+|..|.+.|.+|+++|+.+. ....                   +   ++.+              
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~-~l~~-------------------~---~~~~--------------  257 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP-LKLI-------------------K---DNET--------------  257 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT-TTTC-------------------C---SHHH--------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc-cccc-------------------c---cHHH--------------
Confidence            6899999999999999999999999999998742 1000                   0   0000              


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe----EEEEeCccc-eeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM----WHLSENVKL-RGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~----~~v~~~~~~-~~~a  245 (253)
                                                    ...+.+.+.+.  |++++++++|++|+.++++    +.+.++++. .+.|
T Consensus       258 ------------------------------~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~a  305 (523)
T 1mo9_A          258 ------------------------------RAYVLDRMKEQ--GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET  305 (523)
T ss_dssp             ------------------------------HHHHHHHHHHT--TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEEC
T ss_pred             ------------------------------HHHHHHHHHhC--CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEc
Confidence                                          01222223332  6999999999999876555    677777766 8999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       306 D~Vv~A~G  313 (523)
T 1mo9_A          306 DFVFLGLG  313 (523)
T ss_dssp             SCEEECCC
T ss_pred             CEEEECcC
Confidence            99999998

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.62  E-value=1.8e-07  Score=84.69  Aligned_cols=91  Identities=22%  Similarity=0.351  Sum_probs=65.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+. ....            +          ++                
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~------------~----------~~----------------  212 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER-ILPT------------Y----------DS----------------  212 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS-SSTT------------S----------CH----------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc-cccc------------c----------CH----------------
Confidence            5899999999999999999999999999998742 1000            0          00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc--ceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK--LRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~--~~~~ad~  247 (253)
                                                   .+. .+.+.+.+.  |++++++++|++++. ++ +.+...++  ..+.+|.
T Consensus       213 -----------------------------~~~~~l~~~l~~~--gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~  259 (458)
T 1lvl_A          213 -----------------------------ELTAPVAESLKKL--GIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADR  259 (458)
T ss_dssp             -----------------------------HHHHHHHHHHHHH--TCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSC
T ss_pred             -----------------------------HHHHHHHHHHHHC--CCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCE
Confidence                                         011 122223232  699999999999986 43 66653334  5799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       260 vv~a~G  265 (458)
T 1lvl_A          260 VLVAVG  265 (458)
T ss_dssp             EEECCC
T ss_pred             EEECcC
Confidence            999998

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.62  E-value=1.9e-07  Score=84.14  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=66.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+++|||+|++|+.+|..|++.|.+|+|+|+.+. ...+                  .+   ++               
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~------------------~~---~~---------------  191 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR-PLGV------------------YL---DK---------------  191 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-TTTT------------------TC---CH---------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcc-cccc------------------cC---CH---------------
Confidence            37999999999999999999999999999998742 1100                  00   00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                    .+...+...+++. |++++++++|++++.++..+.+.. ++..+.+|.||
T Consensus       192 ------------------------------~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi  239 (447)
T 1nhp_A          192 ------------------------------EFTDVLTEEMEAN-NITIATGETVERYEGDGRVQKVVT-DKNAYDADLVV  239 (447)
T ss_dssp             ------------------------------HHHHHHHHHHHTT-TEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEE
T ss_pred             ------------------------------HHHHHHHHHHHhC-CCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEE
Confidence                                          0122222222332 699999999999986533334544 44689999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       240 ~a~G  243 (447)
T 1nhp_A          240 VAVG  243 (447)
T ss_dssp             ECSC
T ss_pred             ECcC
Confidence            9998

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.62  E-value=3.9e-07  Score=81.23  Aligned_cols=92  Identities=21%  Similarity=0.239  Sum_probs=66.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||+|..|+.+|..|++.|.+|+++|+.+. ...+.                  +   ++               
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~------------------~---~~---------------  187 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR-LMSRA------------------A---PA---------------  187 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SSTTT------------------S---CH---------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc-ccccc------------------c---CH---------------
Confidence            46899999999999999999999999999998742 10000                  0   00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                    .+...+...+++. |++++++++|++++  ++  .+.++++..+.+|.||
T Consensus       188 ------------------------------~~~~~l~~~l~~~-GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi  232 (408)
T 2gqw_A          188 ------------------------------TLADFVARYHAAQ-GVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVV  232 (408)
T ss_dssp             ------------------------------HHHHHHHHHHHHT-TCEEEESCCEEEEE--TT--EEEETTSCEEECSEEE
T ss_pred             ------------------------------HHHHHHHHHHHHc-CcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEE
Confidence                                          0122222222222 69999999999998  33  4556677789999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       233 ~a~G  236 (408)
T 2gqw_A          233 VGIG  236 (408)
T ss_dssp             ECSC
T ss_pred             ECcC
Confidence            9997

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.61  E-value=3e-07  Score=82.97  Aligned_cols=94  Identities=20%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|..|+.+|..|.+.|.+|+++|+.+. ...+                  .+   ++                
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------------~~---d~----------------  189 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN-LLPK------------------YF---DK----------------  189 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SSTT------------------TC---CH----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc-cccc------------------cC---CH----------------
Confidence            6899999999999999999999999999998742 1000                  00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++ .|++++++++|++++..++++.+.++++ .+.||.||+
T Consensus       190 -----------------------------~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~  238 (452)
T 3oc4_A          190 -----------------------------EMVAEVQKSLEK-QAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIF  238 (452)
T ss_dssp             -----------------------------HHHHHHHHHHHT-TTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEE
T ss_pred             -----------------------------HHHHHHHHHHHH-cCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEE
Confidence                                         012222222222 2699999999999997777777766665 899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       239 A~G  241 (452)
T 3oc4_A          239 ALN  241 (452)
T ss_dssp             CSC
T ss_pred             CcC
Confidence            998

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.61  E-value=2e-07  Score=83.13  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=69.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++|+.+. .-.                             ..+.        
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~-~l~-----------------------------~~~~--------  184 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDE-LLV-----------------------------RVLG--------  184 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSH-----------------------------HHHC--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc-cch-----------------------------hhcC--------
Confidence            46899999999999999999999999999998742 100                             0000        


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                   ..+.+.+...+++. |+++++++.|++++.++....+.++++..+.||.||
T Consensus       185 -----------------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv  234 (410)
T 3ef6_A          185 -----------------------------RRIGAWLRGLLTEL-GVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSAL  234 (410)
T ss_dssp             -----------------------------HHHHHHHHHHHHHH-TCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEE
T ss_pred             -----------------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEE
Confidence                                         00122222222222 699999999999987665456777788899999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       235 ~a~G  238 (410)
T 3ef6_A          235 ICVG  238 (410)
T ss_dssp             ECSC
T ss_pred             EeeC
Confidence            9998

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.60  E-value=2.1e-07  Score=84.27  Aligned_cols=94  Identities=14%  Similarity=0.104  Sum_probs=67.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||..|+.+|..|.+.|.+|+|+|+.+. ....            +          ++                
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------~----------~~----------------  212 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR-ALPN------------E----------DA----------------  212 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTT------------S----------CH----------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc-cccc------------c----------CH----------------
Confidence            6899999999999999999999999999998742 1000            0          00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC-cc--ceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN-VK--LRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~-~~--~~~~ad~  247 (253)
                                                   .+...+...+++. |++++++++|++++.+++.+.+... ++  ..+.+|.
T Consensus       213 -----------------------------~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~  262 (464)
T 2a8x_A          213 -----------------------------DVSKEIEKQFKKL-GVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEK  262 (464)
T ss_dssp             -----------------------------HHHHHHHHHHHHH-TCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESE
T ss_pred             -----------------------------HHHHHHHHHHHHc-CCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCE
Confidence                                         0112222222222 6999999999999877666666543 33  5799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       263 vv~a~G  268 (464)
T 2a8x_A          263 VLQAIG  268 (464)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999998

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.60  E-value=2e-07  Score=85.34  Aligned_cols=95  Identities=17%  Similarity=0.311  Sum_probs=68.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||||..|+.+|..|++.|.+|+|+|+.+. ....            +          ++               
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------~----------d~---------------  217 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR-ILRK------------F----------DE---------------  217 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS-SCTT------------S----------CH---------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc-cCcc------------c----------ch---------------
Confidence            36899999999999999999999999999998642 1000            0          00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCccce-eecCE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENVKLR-GQFDV  247 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~-~~ad~  247 (253)
                                                    .+...+...+++. |++++++++|++|+.+++ .+.+.++++.. +.+|.
T Consensus       218 ------------------------------~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~  266 (500)
T 1onf_A          218 ------------------------------SVINVLENDMKKN-NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDH  266 (500)
T ss_dssp             ------------------------------HHHHHHHHHHHHT-TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESE
T ss_pred             ------------------------------hhHHHHHHHHHhC-CCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCE
Confidence                                          0112222222222 699999999999987643 36777777766 99999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       267 vi~a~G  272 (500)
T 1onf_A          267 VIYCVG  272 (500)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999997

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.60  E-value=4e-07  Score=82.14  Aligned_cols=95  Identities=13%  Similarity=0.160  Sum_probs=67.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+++|+.+. .-.+                  .+   ++                
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------------~~---~~----------------  191 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER-VLYK------------------YF---DK----------------  191 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS-TTTT------------------TS---CH----------------
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc-hhhh------------------hh---hh----------------
Confidence            5899999999999999999999999999998642 1000                  00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++. |++++++++|++++.+++.+.....++..+.+|.||+
T Consensus       192 -----------------------------~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~  241 (452)
T 2cdu_A          192 -----------------------------EFTDILAKDYEAH-GVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAIL  241 (452)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEE
T ss_pred             -----------------------------hHHHHHHHHHHHC-CCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEE
Confidence                                         0122222222222 6999999999999876666643334667899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       242 a~G  244 (452)
T 2cdu_A          242 CIG  244 (452)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            998

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.59  E-value=5.1e-08  Score=93.31  Aligned_cols=41  Identities=29%  Similarity=0.456  Sum_probs=36.3

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.. ..||.+
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~-~~GG~~  428 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE-KIGGHL  428 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTTH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC-CcCCee
Confidence            34799999999999999999999999999999975 367655

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.59  E-value=4.1e-07  Score=82.40  Aligned_cols=91  Identities=16%  Similarity=0.273  Sum_probs=68.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+++|+.+. .        .+     ++          +                
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~--------l~-----~~----------~----------------  216 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTL-F--------FR-----ED----------P----------------  216 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT-T--------TT-----SC----------H----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCc-c--------CC-----CC----------H----------------
Confidence            6899999999999999999999999999998642 0        00     00          0                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                   .+ ..+.+.+.+.  |++++++++|++++.+++.+.+.+++ +.+.+|.||
T Consensus       217 -----------------------------~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv  264 (467)
T 1zk7_A          217 -----------------------------AIGEAVTAAFRAE--GIEVLEHTQASQVAHMDGEFVLTTTH-GELRADKLL  264 (467)
T ss_dssp             -----------------------------HHHHHHHHHHHHT--TCEEETTCCEEEEEEETTEEEEEETT-EEEEESEEE
T ss_pred             -----------------------------HHHHHHHHHHHhC--CCEEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEE
Confidence                                         01 1222223222  69999999999999887777776654 689999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       265 ~a~G  268 (467)
T 1zk7_A          265 VATG  268 (467)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            9998

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.59  E-value=3.3e-07  Score=83.68  Aligned_cols=94  Identities=17%  Similarity=0.193  Sum_probs=68.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc---CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR---GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~---g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      .+++|||+|..|+.+|..|.+.   |.+|+|+|+.+. ....            +          ++             
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~-~l~~------------~----------d~-------------  231 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM-ILRG------------F----------DS-------------  231 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS-SSTT------------S----------CH-------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC-cccc------------c----------CH-------------
Confidence            5899999999999999999999   999999998742 1000            0          00             


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCccceeecC
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENVKLRGQFD  246 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~~~ad  246 (253)
                                                      .+...+...+++ .|++|+++++|++|+.+++ .+.+.++++..+.+|
T Consensus       232 --------------------------------~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D  278 (490)
T 1fec_A          232 --------------------------------ELRKQLTEQLRA-NGINVRTHENPAKVTKNADGTRHVVFESGAEADYD  278 (490)
T ss_dssp             --------------------------------HHHHHHHHHHHH-TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEES
T ss_pred             --------------------------------HHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcC
Confidence                                            011222222222 2699999999999987654 467777777789999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       279 ~vv~a~G  285 (490)
T 1fec_A          279 VVMLAIG  285 (490)
T ss_dssp             EEEECSC
T ss_pred             EEEEccC
Confidence            9999998

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.59  E-value=2.4e-07  Score=84.05  Aligned_cols=95  Identities=23%  Similarity=0.284  Sum_probs=70.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .+++|||+|.+|+.+|..|.+. |.+|+++|+... ...+                  .+   ++               
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~-~l~~------------------~~---~~---------------  202 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQ-IMPG------------------FT---SK---------------  202 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSS-SSTT------------------TS---CH---------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCc-cccc------------------cc---CH---------------
Confidence            6899999999999999999999 999999998642 1000                  00   00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                    .+...+...+++ .|++++++++|++++.+++.+.+..+++..+.+|.||
T Consensus       203 ------------------------------~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv  251 (472)
T 3iwa_A          203 ------------------------------SLSQMLRHDLEK-NDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVI  251 (472)
T ss_dssp             ------------------------------HHHHHHHHHHHH-TTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEE
T ss_pred             ------------------------------HHHHHHHHHHHh-cCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEE
Confidence                                          012222222222 2699999999999988777777777777789999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       252 ~a~G  255 (472)
T 3iwa_A          252 LAAG  255 (472)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            9998

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.58  E-value=2.6e-07  Score=83.70  Aligned_cols=94  Identities=13%  Similarity=0.141  Sum_probs=67.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|..|+.+|..|.+.|.+|+|+|+.+. ....            +          ++                
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------~----------d~----------------  215 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR-CAPT------------L----------DE----------------  215 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTT------------S----------CH----------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc-cccc------------C----------CH----------------
Confidence            6899999999999999999999999999998742 1000            0          00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHH-hhcCCcEEEcCeEEEEEEEeCCeEEEEeC--cc--ceeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLL-AQTSMVSIVRPCWISNLQPFNGMWHLSEN--VK--LRGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~gv~i~~~t~V~~i~~~~~~~~v~~~--~~--~~~~a  245 (253)
                                                   .+...+...+ ++ .|++++++++|++++.+++.+.+..+  ++  ..+.+
T Consensus       216 -----------------------------~~~~~l~~~l~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~  265 (468)
T 2qae_A          216 -----------------------------DVTNALVGALAKN-EKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTC  265 (468)
T ss_dssp             -----------------------------HHHHHHHHHHHHH-TCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEE
T ss_pred             -----------------------------HHHHHHHHHHhhc-CCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEEC
Confidence                                         0122222222 22 26999999999999887666666543  44  57999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       266 D~vv~a~G  273 (468)
T 2qae_A          266 EALLVSVG  273 (468)
T ss_dssp             SEEEECSC
T ss_pred             CEEEECCC
Confidence            99999998

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.58  E-value=4.4e-07  Score=83.92  Aligned_cols=93  Identities=17%  Similarity=0.095  Sum_probs=71.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+.+|..+++.|.+|+|+++... .         +              ..++.+              
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~-L---------~--------------~~D~ei--------------  265 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV-L---------R--------------GFDQQC--------------  265 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS-S---------T--------------TSCHHH--------------
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc-c---------c--------------ccchhH--------------
Confidence            5899999999999999999999999999987421 0         0              000000              


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                    ...+.+.|.++  ++++++++.|..++..++.+.+...++..+.+|.|++
T Consensus       266 ------------------------------~~~l~~~l~~~--gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLv  313 (542)
T 4b1b_A          266 ------------------------------AVKVKLYMEEQ--GVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLY  313 (542)
T ss_dssp             ------------------------------HHHHHHHHHHT--TCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEE
T ss_pred             ------------------------------HHHHHHHHHhh--cceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEE
Confidence                                          02222333333  6999999999999999999888888888999999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       314 AvG  316 (542)
T 4b1b_A          314 AIG  316 (542)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            998

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.58  E-value=1.3e-07  Score=85.41  Aligned_cols=41  Identities=10%  Similarity=-0.005  Sum_probs=34.5

Q ss_pred             CCcEEEcCeEEEEEEEeCCeEEEEeC---ccc--eeecCEEEEcCC
Q 047483          213 SMVSIVRPCWISNLQPFNGMWHLSEN---VKL--RGQFDVVVIAHN  253 (253)
Q Consensus       213 ~gv~i~~~t~V~~i~~~~~~~~v~~~---~~~--~~~ad~VV~AtG  253 (253)
                      .++++++++.|++++.+++.|.+...   ++.  ++.+|.||+|+|
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG  374 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATG  374 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeC
Confidence            47999999999999998888887754   333  489999999998

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.57  E-value=2.5e-07  Score=84.61  Aligned_cols=93  Identities=22%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc---CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR---GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~---g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      .+++|||+|..|+.+|..|++.   |.+|+|+|+.+. .-        .  .  +          ++             
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~-~l--------~--~--~----------d~-------------  235 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL-IL--------R--G--F----------DE-------------  235 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS-SC--------T--T--S----------CH-------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc-cc--------c--c--c----------CH-------------
Confidence            5899999999999999999999   999999998642 10        0  0  0          00             


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCccceeec
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENVKLRGQF  245 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~~~a  245 (253)
                                                      .+. .+.+.+.+.  |++++++++|++|+.+++ .+.+.++++..+.+
T Consensus       236 --------------------------------~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~  281 (495)
T 2wpf_A          236 --------------------------------TIREEVTKQLTAN--GIEIMTNENPAKVSLNTDGSKHVTFESGKTLDV  281 (495)
T ss_dssp             --------------------------------HHHHHHHHHHHHT--TCEEEESCCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred             --------------------------------HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCceEEEEECCCcEEEc
Confidence                                            011 222223222  699999999999987654 46777777778999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       282 D~vv~a~G  289 (495)
T 2wpf_A          282 DVVMMAIG  289 (495)
T ss_dssp             SEEEECSC
T ss_pred             CEEEECCC
Confidence            99999997

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.57  E-value=2.1e-08  Score=90.92  Aligned_cols=40  Identities=20%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH-c------CCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDK-R------GVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~-~------g~~v~~~e~~~~~~gg~~  130 (253)
                      .+||+|||||++|+.+|..|++ .      |++|+|||+.+. .||.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~-~gg~~   49 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT-PWGLV   49 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS-CSTHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC-CCCcc
Confidence            3699999999999999999999 7      999999999753 55544

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.56  E-value=3.1e-07  Score=85.02  Aligned_cols=94  Identities=21%  Similarity=0.302  Sum_probs=69.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|.+|+.+|..|++.|.+|+++|+.+. ....                      .++                
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~----------------------~~~----------------  192 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ-VMTP----------------------VDR----------------  192 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SCTT----------------------SCH----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc-cchh----------------------cCH----------------
Confidence            5899999999999999999999999999998642 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEE-------------------eCC
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQP-------------------FNG  231 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~-------------------~~~  231 (253)
                                                   .+...+...+++ .|+++++++.|++++.                   .++
T Consensus       193 -----------------------------~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~  242 (565)
T 3ntd_A          193 -----------------------------EMAGFAHQAIRD-QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKG  242 (565)
T ss_dssp             -----------------------------HHHHHHHHHHHH-TTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTC
T ss_pred             -----------------------------HHHHHHHHHHHH-CCCEEEeCCeEEEEeccccccccccccccccccccCCC
Confidence                                         012222222222 2699999999999987                   356


Q ss_pred             eEEEEeCccceeecCEEEEcCC
Q 047483          232 MWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       232 ~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      .+.+..+++..+.||.||+|+|
T Consensus       243 ~~~v~~~~g~~i~~D~vi~a~G  264 (565)
T 3ntd_A          243 HLSLTLSNGELLETDLLIMAIG  264 (565)
T ss_dssp             EEEEEETTSCEEEESEEEECSC
T ss_pred             cEEEEEcCCCEEEcCEEEECcC
Confidence            6777777778999999999998

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.56  E-value=2.4e-07  Score=86.63  Aligned_cols=34  Identities=38%  Similarity=0.514  Sum_probs=31.7

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+||+|||||++|+++|+.|++.|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            3489999999999999999999999999999974

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.55  E-value=4.3e-07  Score=82.83  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||.+|+.+|..|++.|.+|+|+|+.+. ....                      .++                
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~----------------------~d~----------------  239 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDT-ILGG----------------------MDG----------------  239 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS-SSSS----------------------SCH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccc-cccc----------------------CCH----------------
Confidence            5899999999999999999999999999998742 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc---c--ceeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV---K--LRGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~---~--~~~~a  245 (253)
                                                   .+...+...+++. |++++++++|++++.+++.+.+..++   +  ..+.+
T Consensus       240 -----------------------------~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~  289 (491)
T 3urh_A          240 -----------------------------EVAKQLQRMLTKQ-GIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDA  289 (491)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEE
T ss_pred             -----------------------------HHHHHHHHHHHhC-CCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEc
Confidence                                         0122222222222 69999999999999888877666432   3  57999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       290 D~Vi~a~G  297 (491)
T 3urh_A          290 EVVLIATG  297 (491)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeeC
Confidence            99999998

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.55  E-value=3.6e-07  Score=83.47  Aligned_cols=94  Identities=17%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||||.+|+.+|..|++.|.+|+++|+.+. ....                      .++               
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-~l~~----------------------~d~---------------  215 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGS-VANL----------------------QDE---------------  215 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTC-CTTC----------------------CCH---------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc-cccc----------------------CCH---------------
Confidence            36899999999999999999999999999998742 1000                      000               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC--cc--ceeec
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN--VK--LRGQF  245 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~--~~--~~~~a  245 (253)
                                                    .+...+...+++ . ++++++++|++++.+++.+.+...  ++  ..+.+
T Consensus       216 ------------------------------~~~~~l~~~l~~-~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~  263 (492)
T 3ic9_A          216 ------------------------------EMKRYAEKTFNE-E-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESF  263 (492)
T ss_dssp             ------------------------------HHHHHHHHHHHT-T-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEE
T ss_pred             ------------------------------HHHHHHHHHHhh-C-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEEC
Confidence                                          012222222232 2 899999999999988777777653  44  57999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       264 D~Vi~a~G  271 (492)
T 3ic9_A          264 QYVLAATG  271 (492)
T ss_dssp             SEEEECSC
T ss_pred             CEEEEeeC
Confidence            99999998

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.54  E-value=3.1e-07  Score=84.94  Aligned_cols=34  Identities=32%  Similarity=0.490  Sum_probs=31.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||++|||+|++|+.+|..+++.|.+|+|+|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            3899999999999999999999999999999753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.54  E-value=2e-07  Score=84.39  Aligned_cols=94  Identities=16%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||..|+.+|..|++.|.+|+|+|+.+. ....                      .++                
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~~~----------------  218 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE-IVPT----------------------MDA----------------  218 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS-SSTT----------------------SCH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-cccc----------------------ccH----------------
Confidence            6899999999999999999999999999998742 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC---cc--ceeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN---VK--LRGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~---~~--~~~~a  245 (253)
                                                   .+.+.+...+++. |++++++++|++++.+++.+.+...   ++  ..+.+
T Consensus       219 -----------------------------~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~  268 (470)
T 1dxl_A          219 -----------------------------EIRKQFQRSLEKQ-GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEA  268 (470)
T ss_dssp             -----------------------------HHHHHHHHHHHHS-SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEE
T ss_pred             -----------------------------HHHHHHHHHHHHc-CCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEEC
Confidence                                         0122222222332 6999999999999877666665543   22  57999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       269 D~vv~a~G  276 (470)
T 1dxl_A          269 DVVLVSAG  276 (470)
T ss_dssp             SEEECCCC
T ss_pred             CEEEECCC
Confidence            99999997

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.54  E-value=2.9e-08  Score=98.39  Aligned_cols=39  Identities=28%  Similarity=0.600  Sum_probs=34.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGNHGLGGR  129 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~~gg~  129 (253)
                      .+||+|||||++|+++|+.|++.|+ +|+|||+.. ..||.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~-~~GG~  226 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE-YVGGL  226 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS-SCSTH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCC-CCCcc
Confidence            3799999999999999999999999 799999974 36664

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.52  E-value=8.3e-07  Score=81.10  Aligned_cols=95  Identities=17%  Similarity=0.211  Sum_probs=68.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhH----cCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhc
Q 047483           91 PHVGIIGGGMAGLACALSLDK----RGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLER  166 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~----~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      .+|+|||||..|+.+|..|++    .|.+|+++++... .-++.                  +                 
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~-~~~~~------------------l-----------------  224 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG-NMGKI------------------L-----------------  224 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS-TTTTT------------------S-----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc-ccccc------------------C-----------------
Confidence            689999999999999999987    4789999997631 10000                  0                 


Q ss_pred             cccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483          167 GLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD  246 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad  246 (253)
                                                +.     .+...+...+++. |++++++++|++++.+++.+.+.++++..+.||
T Consensus       225 --------------------------~~-----~~~~~~~~~l~~~-GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD  272 (493)
T 1m6i_A          225 --------------------------PE-----YLSNWTMEKVRRE-GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETD  272 (493)
T ss_dssp             --------------------------CH-----HHHHHHHHHHHTT-TCEEECSCCEEEEEEETTEEEEEETTSCEEEES
T ss_pred             --------------------------CH-----HHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCeEEEEECCCCEEECC
Confidence                                      00     0112222222222 699999999999987777777777787899999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       273 ~Vv~a~G  279 (493)
T 1m6i_A          273 HIVAAVG  279 (493)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.51  E-value=6.7e-07  Score=81.38  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=65.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||+|++|+.+|..|++.|.+|+|+|+.+. ....            +          ++               
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~------------~----------~~---------------  227 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH-IGTI------------Y----------DG---------------  227 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG-TTSS------------S----------CH---------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc-hhhc------------C----------CH---------------
Confidence            36899999999999999999999999999998642 1000            0          00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                                    .+.+.+...+++. |++++++++|++++.++..+.+.++ ++.+.+|.||
T Consensus       228 ------------------------------~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi  275 (480)
T 3cgb_A          228 ------------------------------DMAEYIYKEADKH-HIEILTNENVKAFKGNERVEAVETD-KGTYKADLVL  275 (480)
T ss_dssp             ------------------------------HHHHHHHHHHHHT-TCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEE
T ss_pred             ------------------------------HHHHHHHHHHHHc-CcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEE
Confidence                                          0112222222222 6999999999999875433345444 4589999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       276 ~a~G  279 (480)
T 3cgb_A          276 VSVG  279 (480)
T ss_dssp             ECSC
T ss_pred             ECcC
Confidence            9998

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.50  E-value=7.7e-08  Score=87.29  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=34.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+.+|..|++.|  ++|+|||+.+. .||.+
T Consensus         7 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~-~gg~~   47 (460)
T 1cjc_A            7 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV-PFGLV   47 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS-SCTHH
T ss_pred             ceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc-CCcee
Confidence            79999999999999999999998  99999999753 45543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.50  E-value=5.4e-07  Score=81.74  Aligned_cols=94  Identities=18%  Similarity=0.262  Sum_probs=67.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+++|+.+. .        ..              ..++                
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~--------l~--------------~~~~----------------  221 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-F--------LP--------------AVDE----------------  221 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-S--------ST--------------TSCH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-c--------Cc--------------ccCH----------------
Confidence            5899999999999999999999999999998642 1        00              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc---ceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK---LRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~---~~~~ad~  247 (253)
                                                   .+...+...+++. |++++++++|++++.+++.+.+...++   ..+.+|.
T Consensus       222 -----------------------------~~~~~l~~~l~~~-Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~  271 (476)
T 3lad_A          222 -----------------------------QVAKEAQKILTKQ-GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDK  271 (476)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESE
T ss_pred             -----------------------------HHHHHHHHHHHhC-CCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCE
Confidence                                         0122222222222 699999999999998877766665432   5789999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       272 vi~a~G  277 (476)
T 3lad_A          272 LIVAVG  277 (476)
T ss_dssp             EEECSC
T ss_pred             EEEeeC
Confidence            999998

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.47  E-value=9.1e-07  Score=80.70  Aligned_cols=94  Identities=16%  Similarity=0.268  Sum_probs=65.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||+|..|+.+|..|++.|.+|+|+|+.+. .-.+                  .+   ++               
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------------~~---~~---------------  236 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT-CLAG------------------YY---DR---------------  236 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-TTTT------------------TS---CH---------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc-hhhh------------------HH---HH---------------
Confidence            36899999999999999999999999999998742 1000                  00   00               


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE-EEEeCccceeecCEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW-HLSENVKLRGQFDVV  248 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~-~v~~~~~~~~~ad~V  248 (253)
                                                    .+.+.+...+++. |++++++++|++++. ++.+ .+.. ++..+.+|.|
T Consensus       237 ------------------------------~~~~~l~~~l~~~-GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~V  283 (490)
T 2bc0_A          237 ------------------------------DLTDLMAKNMEEH-GIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMV  283 (490)
T ss_dssp             ------------------------------HHHHHHHHHHHTT-TCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEE
T ss_pred             ------------------------------HHHHHHHHHHHhC-CeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEE
Confidence                                          0122222222222 699999999999986 3333 2444 5578999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       284 i~a~G  288 (490)
T 2bc0_A          284 ILAVG  288 (490)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99998

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.46  E-value=1.3e-06  Score=79.13  Aligned_cols=93  Identities=20%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||+|..|+.+|..|.+.|.+|+++|+.+. ....                      .++                
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~-~l~~----------------------~~~----------------  211 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE-ILSR----------------------FDQ----------------  211 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTT----------------------SCH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-cccc----------------------cCH----------------
Confidence            6899999999999999999999999999998642 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEE-eCccceeecCEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLS-ENVKLRGQFDVV  248 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~-~~~~~~~~ad~V  248 (253)
                                                   .+...+...+++. |++++++++|++++.++++ +.+. ++++. +.+|.|
T Consensus       212 -----------------------------~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~V  260 (463)
T 4dna_A          212 -----------------------------DMRRGLHAAMEEK-GIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQV  260 (463)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEE
T ss_pred             -----------------------------HHHHHHHHHHHHC-CCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEE
Confidence                                         0112222222222 6999999999999887554 6676 66665 999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       261 v~a~G  265 (463)
T 4dna_A          261 MLALG  265 (463)
T ss_dssp             EECSC
T ss_pred             EEeeC
Confidence            99998

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.46  E-value=1.4e-06  Score=78.88  Aligned_cols=92  Identities=16%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+++++.+. ...                                          
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~------------------------------------------  209 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR-ALI------------------------------------------  209 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SCT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc-CCC------------------------------------------
Confidence            5899999999999999999999999999998642 100                                          


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC-CeEEEEeC--ccc--eeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN-GMWHLSEN--VKL--RGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~-~~~~v~~~--~~~--~~~a  245 (253)
                                         ...        -..+.+.+.+.+. ++++++++|++++.++ +.+.+..+  ++.  .+.+
T Consensus       210 -------------------~~~--------d~~~~~~l~~~l~-v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~  261 (466)
T 3l8k_A          210 -------------------TLE--------DQDIVNTLLSILK-LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFT  261 (466)
T ss_dssp             -------------------TSC--------CHHHHHHHHHHHC-CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEE
T ss_pred             -------------------CCC--------CHHHHHHHHhcCE-EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEc
Confidence                               000        0122222333333 8999999999998876 77777665  444  7999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       262 D~vi~a~G  269 (466)
T 3l8k_A          262 NSVVLAAG  269 (466)
T ss_dssp             SCEEECCC
T ss_pred             CEEEECcC
Confidence            99999998

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.45  E-value=1.2e-06  Score=79.52  Aligned_cols=94  Identities=15%  Similarity=0.122  Sum_probs=66.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+++++.+. ...                      ..++                
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~----------------------~~d~----------------  228 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK-VLR----------------------SFDS----------------  228 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SCT----------------------TSCH----------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc-ccc----------------------ccCH----------------
Confidence            5899999999999999999999999999998642 100                      0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe--EEEEeCc-------cc
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM--WHLSENV-------KL  241 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~--~~v~~~~-------~~  241 (253)
                                                   .+...+...+++. |+++++++.|++++..+++  +.+...+       +.
T Consensus       229 -----------------------------~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~  278 (478)
T 3dk9_A          229 -----------------------------MISTNCTEELENA-GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTM  278 (478)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEE
T ss_pred             -----------------------------HHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccce
Confidence                                         0122222222222 6999999999999876554  5555543       25


Q ss_pred             eeecCEEEEcCC
Q 047483          242 RGQFDVVVIAHN  253 (253)
Q Consensus       242 ~~~ad~VV~AtG  253 (253)
                      .+.+|.||+|+|
T Consensus       279 ~~~~D~vi~a~G  290 (478)
T 3dk9_A          279 IPDVDCLLWAIG  290 (478)
T ss_dssp             EEEESEEEECSC
T ss_pred             EEEcCEEEEeec
Confidence            789999999997

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.44  E-value=1.4e-06  Score=75.74  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=66.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|.+|+-+|..|.+.|.+|+++++... ....    .       ++                           
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~-~~~~----~-------~d---------------------------  207 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG-LNDP----D-------AD---------------------------  207 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------------------------------------
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC-CCCC----C-------CC---------------------------
Confidence            5899999999999999999999999999998642 1000    0       00                           


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCC-cEEEcCeEEEEEEEeCCeEEEEeCccceee-cCEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSM-VSIVRPCWISNLQPFNGMWHLSENVKLRGQ-FDVV  248 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~g-v~i~~~t~V~~i~~~~~~~~v~~~~~~~~~-ad~V  248 (253)
                                      +.. ..+     ....+.+...+++ .+ ++++++++|.+++.+++.+.+.+.++..+. +|.|
T Consensus       208 ----------------~~~-~~~-----~~~~~~l~~~l~~-~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~v  264 (369)
T 3d1c_A          208 ----------------PSV-RLS-----PYTRQRLGNVIKQ-GARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEP  264 (369)
T ss_dssp             ----------------CTT-SCC-----HHHHHHHHHHHHT-TCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCC
T ss_pred             ----------------CCc-cCC-----HHHHHHHHHHHhh-CCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCce
Confidence                            000 000     0012222222222 24 999999999999877777777777766665 6999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       265 i~a~G  269 (369)
T 3d1c_A          265 ILATG  269 (369)
T ss_dssp             EECCC
T ss_pred             EEeec
Confidence            99997

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.38  E-value=6.8e-07  Score=78.59  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+++|||||++|+.+|..|++.|.+|+++|+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  176 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA  176 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            589999999999999999999999999999874

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.38  E-value=2.8e-07  Score=87.48  Aligned_cols=73  Identities=16%  Similarity=0.364  Sum_probs=55.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--------CeEEEEcCCCCCC----------------CCCcccccc-CC----Cccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--------VKSTVFDTGNHGL----------------GGRMGTRMI-GP----QPLI  141 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--------~~v~~~e~~~~~~----------------gg~~~~~~~-~~----~~~~  141 (253)
                      .+|+|||||++||++|+.|.++|        ++|+|||++....                ||++.+... ..    .+..
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~~  136 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDTI  136 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCcE
Confidence            58999999999999999999998        9999999985147                888876655 22    3466


Q ss_pred             cccccceeccCchhHHHHHHhh
Q 047483          142 FDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++.|...+......+.++++++
T Consensus       137 ~e~G~~~~~~~~~~~~~~~~~l  158 (721)
T 3ayj_A          137 YEVGAMRFPEIAGLTWHYASAA  158 (721)
T ss_dssp             EECSCCCEETTCHHHHHHHHHH
T ss_pred             EecCCEEecCccHHHHHHHHHh
Confidence            7888877765555555555544

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.38  E-value=2.1e-07  Score=83.56  Aligned_cols=33  Identities=36%  Similarity=0.626  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||+|||||++||++|+.|+++|++|+|||+..
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            699999999999999999999999999999974

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.38  E-value=1.6e-06  Score=73.93  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+-+|..|.+.|.+|+++++..
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~  178 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  178 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            3689999999999999999999999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.38  E-value=1.4e-06  Score=81.10  Aligned_cols=92  Identities=21%  Similarity=0.296  Sum_probs=66.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|.+|+.+|..|++.|.+|+++|+... ....            +          +.                
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~------------~----------~~----------------  228 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ-VMPP------------I----------DY----------------  228 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SCTT------------S----------CH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc-cccc------------C----------CH----------------
Confidence            5899999999999999999999999999998642 1000            0          00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++ .|++++++++|++++.+++.  +..+++..+.+|.||+
T Consensus       229 -----------------------------~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~  276 (588)
T 3ics_A          229 -----------------------------EMAAYVHEHMKN-HDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLIL  276 (588)
T ss_dssp             -----------------------------HHHHHHHHHHHH-TTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEE
T ss_pred             -----------------------------HHHHHHHHHHHH-cCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEE
Confidence                                         011222222222 26999999999999876554  4456677899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       277 a~G  279 (588)
T 3ics_A          277 AIG  279 (588)
T ss_dssp             CSC
T ss_pred             ccC
Confidence            998

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.37  E-value=3.5e-06  Score=72.11  Aligned_cols=90  Identities=16%  Similarity=0.111  Sum_probs=66.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++++... .         .                                 
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~-~---------~---------------------------------  209 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH-L---------R---------------------------------  209 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS-C---------C---------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc-c---------C---------------------------------
Confidence            36799999999999999999999999999998642 0         0                                 


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEE-EEeCc-----ccee
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH-LSENV-----KLRG  243 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~-v~~~~-----~~~~  243 (253)
                                       +             ...+.+.+.+. .|+++++++.|.+|+.+++.+. +...+     +..+
T Consensus       210 -----------------~-------------~~~~~~~l~~~-~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i  258 (338)
T 3itj_A          210 -----------------A-------------STIMQKRAEKN-EKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDL  258 (338)
T ss_dssp             -----------------S-------------CHHHHHHHHHC-TTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEE
T ss_pred             -----------------C-------------CHHHHHHHHhc-CCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEE
Confidence                             0             02333333332 3699999999999988765432 43332     4579


Q ss_pred             ecCEEEEcCC
Q 047483          244 QFDVVVIAHN  253 (253)
Q Consensus       244 ~ad~VV~AtG  253 (253)
                      .+|.||+|+|
T Consensus       259 ~~D~vi~a~G  268 (338)
T 3itj_A          259 PVSGLFYAIG  268 (338)
T ss_dssp             ECSEEEECSC
T ss_pred             EeCEEEEEeC
Confidence            9999999997

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.36  E-value=1.8e-06  Score=74.12  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~  185 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRP  185 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC
Confidence            689999999999999999999999999999864

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.34  E-value=1.2e-06  Score=79.02  Aligned_cols=93  Identities=19%  Similarity=0.231  Sum_probs=65.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+++|+.+. ....                  .+   ++                
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~------------------~~---~~----------------  190 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER-VLRR------------------SF---DK----------------  190 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-TTTT------------------TS---CH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc-cchh------------------hc---CH----------------
Confidence            5899999999999999999999999999998742 1000                  00   00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                                   .+...+...+++.  +++++++.|.+++.++ .+.....++..+.+|.||+
T Consensus       191 -----------------------------~~~~~l~~~l~~~--v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~  238 (449)
T 3kd9_A          191 -----------------------------EVTDILEEKLKKH--VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVIL  238 (449)
T ss_dssp             -----------------------------HHHHHHHHHHTTT--SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEE
T ss_pred             -----------------------------HHHHHHHHHHHhC--cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEE
Confidence                                         0122223333332  8999999999998655 3322244557899999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       239 a~G  241 (449)
T 3kd9_A          239 ATG  241 (449)
T ss_dssp             CSC
T ss_pred             eeC
Confidence            998

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.33  E-value=1.8e-06  Score=77.70  Aligned_cols=90  Identities=16%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||..|+.+|..|.+.|.+|+|+|+... ....                      .++                
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-ll~~----------------------~d~----------------  188 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK-INKL----------------------MDA----------------  188 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSC-CSTT----------------------SCG----------------
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecc-cccc----------------------ccc----------------
Confidence            5899999999999999999999999999998742 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                          ..        ...+.+.+.++  +++++++++|++++  ++.  +..+++..+.+|.||+
T Consensus       189 --------------------~~--------~~~~~~~l~~~--gV~i~~~~~v~~~~--~~~--v~~~~g~~~~~D~vl~  234 (437)
T 4eqs_A          189 --------------------DM--------NQPILDELDKR--EIPYRLNEEINAIN--GNE--ITFKSGKVEHYDMIIE  234 (437)
T ss_dssp             --------------------GG--------GHHHHHHHHHT--TCCEEESCCEEEEE--TTE--EEETTSCEEECSEEEE
T ss_pred             --------------------hh--------HHHHHHHhhcc--ceEEEeccEEEEec--CCe--eeecCCeEEeeeeEEE
Confidence                                00        02233333333  69999999998875  333  4467778999999999


Q ss_pred             cCC
Q 047483          251 AHN  253 (253)
Q Consensus       251 AtG  253 (253)
                      |+|
T Consensus       235 a~G  237 (437)
T 4eqs_A          235 GVG  237 (437)
T ss_dssp             CCC
T ss_pred             Eec
Confidence            987

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.31  E-value=2.6e-06  Score=77.48  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+++|||+|..|+.+|..|++.|.+|+++++.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            57999999999999999999999999999974

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.29  E-value=3.1e-06  Score=73.61  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+.+|..|.+.|.+|+++++..
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~  196 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH  196 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            589999999999999999999999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.28  E-value=1.3e-05  Score=67.94  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  176 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD  176 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCC
Confidence            689999999999999999999999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.27  E-value=1.1e-05  Score=68.49  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++... ...                                          
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~-~~~------------------------------------------  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT-FKA------------------------------------------  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS-CCS------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC-CCc------------------------------------------
Confidence            6899999999999999999999999999998642 000                                          


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc---cc--eeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV---KL--RGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~---~~--~~~a  245 (253)
                                           .         ..+.+.+.+ ..+++++++++|++++.++....+...+   +.  .+.+
T Consensus       192 ---------------------~---------~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~  240 (323)
T 3f8d_A          192 ---------------------Q---------PIYVETVKK-KPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNV  240 (323)
T ss_dssp             ---------------------C---------HHHHHHHHT-CTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEEC
T ss_pred             ---------------------C---------HHHHHHHHh-CCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEc
Confidence                                 0         122233333 2369999999999998765543444332   33  7899


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       241 D~vv~a~G  248 (323)
T 3f8d_A          241 NGVFIEIG  248 (323)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEEEC
Confidence            99999987

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.25  E-value=4.3e-06  Score=76.13  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+++|||+|..|+.+|..|++.|.+|+++++.
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  217 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRS  217 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence            57999999999999999999999999999975

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.24  E-value=1.4e-05  Score=68.33  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+-+|..|.+.|.+|+++++.+
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  185 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD  185 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            689999999999999999999999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.21  E-value=1.5e-05  Score=68.04  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~  188 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP  188 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC
Confidence            589999999999999999999999999999863

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.18  E-value=2.1e-05  Score=66.58  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  177 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  177 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCc
Confidence            589999999999999999999999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.17  E-value=2.7e-05  Score=66.68  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=31.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++++.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~  192 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  192 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCC
Confidence            3689999999999999999999999999999864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.16  E-value=1.5e-06  Score=81.67  Aligned_cols=38  Identities=34%  Similarity=0.437  Sum_probs=34.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      .+||+|||||++|+++|+.|+++|++|+|||+... .||
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~-~gg   83 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI-DSG   83 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC-CSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCC-CCC
Confidence            47999999999999999999999999999999753 443

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.15  E-value=2.3e-05  Score=66.29  Aligned_cols=89  Identities=10%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++... .         .     .                            
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~-~---------~-----~----------------------------  184 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDE-F---------R-----A----------------------------  184 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS-C---------B-----S----------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC-C---------C-----C----------------------------
Confidence            6899999999999999999999999999998642 0         0     0                            


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe---EEEEeCccc--eeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM---WHLSENVKL--RGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~---~~v~~~~~~--~~~a  245 (253)
                                           .         ..+.+.+.++ .+++++++++|.+++.+++.   +.+...++.  .+.+
T Consensus       185 ---------------------~---------~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~  233 (315)
T 3r9u_A          185 ---------------------A---------PSTVEKVKKN-EKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNV  233 (315)
T ss_dssp             ---------------------C---------HHHHHHHHHC-TTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECC
T ss_pred             ---------------------C---------HHHHHHHHhc-CCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeec
Confidence                                 0         1222233332 36999999999999887754   334322443  7999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       234 D~vv~a~G  241 (315)
T 3r9u_A          234 PGIFTFVG  241 (315)
T ss_dssp             SCEEECSC
T ss_pred             CeEEEEEc
Confidence            99999997

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.14  E-value=2e-06  Score=76.14  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=31.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||.+|+.+|..|++.|.+|+|+|+.+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~  179 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILE  179 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            589999999999999999999999999999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.14  E-value=1.9e-05  Score=67.25  Aligned_cols=88  Identities=19%  Similarity=0.243  Sum_probs=64.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+++++... .         ..                                 
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~-~---------~~---------------------------------  191 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-F---------RA---------------------------------  191 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS-C---------SS---------------------------------
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc-C---------Cc---------------------------------
Confidence            5899999999999999999999999999998642 0         00                                 


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc-----cceeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV-----KLRGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~-----~~~~~a  245 (253)
                                                    .....+.|.+  .+++++++++|.+++.+++...+...+     +..+.+
T Consensus       192 ------------------------------~~~~~~~l~~--~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~  239 (332)
T 3lzw_A          192 ------------------------------HEHSVENLHA--SKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEI  239 (332)
T ss_dssp             ------------------------------CHHHHHHHHH--SSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEEC
T ss_pred             ------------------------------cHHHHHHHhc--CCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEEC
Confidence                                          0011122322  269999999999998765543343332     457899


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       240 D~vv~a~G  247 (332)
T 3lzw_A          240 DDLIVNYG  247 (332)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeec
Confidence            99999987

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.13  E-value=6.1e-06  Score=75.57  Aligned_cols=40  Identities=3%  Similarity=-0.033  Sum_probs=28.5

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCcc----ceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVK----LRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~----~~~~ad~VV~AtG  253 (253)
                      |++|+++++|++++.++-.......++    .++.||.||.|+|
T Consensus       286 GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~G  329 (502)
T 4g6h_A          286 SIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATG  329 (502)
T ss_dssp             TCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCC
T ss_pred             ceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccC
Confidence            699999999999864322222333333    3689999999987

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.12  E-value=1.5e-05  Score=73.11  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+++|||+|..|+.+|..|++.|.+|+|+++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            46999999999999999999999999999974

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.04  E-value=2.8e-05  Score=66.89  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=31.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+.+|..|++.|.+|+++++..
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~  188 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD  188 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCC
Confidence            3689999999999999999999999999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.03  E-value=3.1e-05  Score=72.23  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999975

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.02  E-value=3.6e-06  Score=77.79  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|++|||+|++|+.+|++|++.|++|+|||++.
T Consensus         7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~   40 (546)
T 1kdg_A            7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   40 (546)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4899999999999999999999999999999975

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.00  E-value=2.7e-05  Score=73.98  Aligned_cols=94  Identities=14%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             CCcEEEEC--cCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           90 DPHVGIIG--GGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        90 ~~~v~iiG--~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ..+|+|||  +|.+|+.+|..|++.|.+|+++++... .....                                     
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~-l~~~~-------------------------------------  564 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ-VSSWT-------------------------------------  564 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS-TTGGG-------------------------------------
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc-ccccc-------------------------------------
Confidence            35799999  999999999999999999999998642 10000                                     


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEE---eCccceee
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLS---ENVKLRGQ  244 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~---~~~~~~~~  244 (253)
                                        .  ....        ...+.+.+.+.  |++|+++++|++|+.  ++..+.   ..++..+.
T Consensus       565 ------------------~--~~~~--------~~~l~~~l~~~--GV~i~~~~~V~~i~~--~~~~v~~~~~~~~~~i~  612 (690)
T 3k30_A          565 ------------------N--NTFE--------VNRIQRRLIEN--GVARVTDHAVVAVGA--GGVTVRDTYASIERELE  612 (690)
T ss_dssp             ------------------G--GGTC--------HHHHHHHHHHT--TCEEEESEEEEEEET--TEEEEEETTTCCEEEEE
T ss_pred             ------------------c--cchh--------HHHHHHHHHHC--CCEEEcCcEEEEEEC--CeEEEEEccCCeEEEEE
Confidence                              0  0000        12233333332  699999999999974  334443   23456799


Q ss_pred             cCEEEEcCC
Q 047483          245 FDVVVIAHN  253 (253)
Q Consensus       245 ad~VV~AtG  253 (253)
                      ||.||+|+|
T Consensus       613 aD~VV~A~G  621 (690)
T 3k30_A          613 CDAVVMVTA  621 (690)
T ss_dssp             CSEEEEESC
T ss_pred             CCEEEECCC
Confidence            999999998

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.97  E-value=1.1e-05  Score=74.60  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  211 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP  211 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            3689999999999999999999999999999975

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.92  E-value=3.6e-06  Score=77.70  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++|+||||+|.+|+.+|.+|++ |.+|+|||++..
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            4899999999999999999999 999999999853

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.92  E-value=4.8e-05  Score=63.72  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+.+|..|.+.| +|+++++..
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            68999999999999999999999 999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.89  E-value=0.00013  Score=67.07  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~  388 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  388 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCc
Confidence            589999999999999999999999999999864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.88  E-value=1.4e-05  Score=74.98  Aligned_cols=46  Identities=24%  Similarity=0.325  Sum_probs=40.3

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR  133 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~  133 (253)
                      ++.++||+|||+|+.|..+|..|++.|.+|+++||+.+ .||.+...
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~-~gg~~~~~   50 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSY-YGGNWASF   50 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCGGGCEE
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCc-ccCccccc
Confidence            34469999999999999999999999999999999974 88866543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.87  E-value=7.2e-06  Score=76.36  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~  124 (253)
                      ++|+||||||.+|+.+|.+|++.| .+|+|||++..
T Consensus         6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            389999999999999999999997 79999999853

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.84  E-value=3.1e-05  Score=71.56  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ..+|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            36899999999999999999999999999999753

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.81  E-value=1.1e-05  Score=75.26  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=31.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~  123 (253)
                      ++|+||||||.+|+.+|.+|++. +.+|+|||++.
T Consensus        19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            48999999999999999999985 89999999986

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.78  E-value=0.00034  Score=59.08  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            689999999999999999999999999999753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.72  E-value=0.00027  Score=66.89  Aligned_cols=48  Identities=15%  Similarity=0.048  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc--ceeecCEEEEcCC
Q 047483          202 RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK--LRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~--~~~~ad~VV~AtG  253 (253)
                      ..++...+++. |++++++++|++++  ++++.+. .++  ..+.+|.||+|+|
T Consensus       576 ~~~~~~~l~~~-GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G  625 (671)
T 1ps9_A          576 GWIHRTTLLSR-GVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAG  625 (671)
T ss_dssp             HHHHHHHHHHT-TCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCC
T ss_pred             HHHHHHHHHhc-CCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCC
Confidence            33433333332 69999999999987  3456554 343  5799999999998

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.72  E-value=1.2e-05  Score=74.63  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=32.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH-cCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDK-RGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e~~~~  124 (253)
                      ++|+||||||.+|+.+|.+|++ .+.+|+|||++..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~   37 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS   37 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCc
Confidence            3899999999999999999999 6999999999753

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.71  E-value=2.4e-05  Score=71.64  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|++|||+|++|+.+|+.|++.|.+|+|+|++.
T Consensus        11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999975

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.70  E-value=8.6e-05  Score=70.96  Aligned_cols=33  Identities=18%  Similarity=0.108  Sum_probs=30.7

Q ss_pred             CCcEEEEC--cCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIG--GGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG--~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+|+|||  ||.+|+-+|..|++.|.+|+|+++.
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~  562 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV  562 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEecc
Confidence            35899999  9999999999999999999999985

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.69  E-value=2.3e-05  Score=71.68  Aligned_cols=33  Identities=27%  Similarity=0.491  Sum_probs=31.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|++|||+|++|+.+|+.|++.|++|+|+|++.
T Consensus         6 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            799999999999999999999999999999975

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.69  E-value=0.00015  Score=65.46  Aligned_cols=34  Identities=21%  Similarity=0.473  Sum_probs=30.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..+|+|||||.+|+-+|..+.+.|. +|+++++..
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            4689999999999999999999997 599999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.63  E-value=9.7e-05  Score=68.31  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  224 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA  224 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            3689999999999999999999999999999975

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.62  E-value=3.6e-05  Score=71.15  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=32.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~  124 (253)
                      .+|++|||+|++|+.+|++|++. |.+|+|||++..
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~   48 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD   48 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence            48999999999999999999998 899999999853

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.60  E-value=3.7e-05  Score=71.74  Aligned_cols=35  Identities=31%  Similarity=0.442  Sum_probs=32.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhH-cCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDK-RGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e~~~~  124 (253)
                      .+|++|||+|++|+.+|++|++ .|.+|+|||++..
T Consensus        24 ~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~   59 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence            3899999999999999999999 7999999999753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.59  E-value=0.00022  Score=64.40  Aligned_cols=33  Identities=15%  Similarity=0.080  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            689999999999999999999999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.57  E-value=0.00077  Score=66.81  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||||.+|+-+|..|.+.|. +|+|+++..
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            489999999999999999999996 899999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.57  E-value=0.00029  Score=69.41  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|+.+|..|++.|.+|+|+|+.+
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~  317 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARS  317 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            579999999999999999999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.50  E-value=0.002  Score=54.38  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            589999999999999999999999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.49  E-value=0.00031  Score=62.97  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=31.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVK-STVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+-+|..|++.|.+ |+|+++..
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            36899999999999999999999999 99999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.41  E-value=0.0019  Score=58.22  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHh--------------------HcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLD--------------------KRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~--------------------~~g~-~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+-+|..|+                    +.|. +|+|+++..
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~  199 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG  199 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence            368999999999999999999                    5687 799999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.27  E-value=0.00036  Score=59.71  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=29.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||+|.+|+-+|..|++.| +|+++++.
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            68999999999999999999998 79999986

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.15  E-value=0.0027  Score=57.15  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--------------------CC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--------------------GV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--------------------g~-~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+-+|..|++.                    |. +|+|+++..
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~  201 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG  201 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence            36899999999999999999874                    54 999999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.07  E-value=0.0012  Score=58.25  Aligned_cols=36  Identities=8%  Similarity=0.103  Sum_probs=29.9

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      |++++++++|++|+.+  .  +.++++.++.+|.||+|+|
T Consensus       232 gV~~~~~~~v~~i~~~--~--v~~~~g~~~~~D~vi~a~G  267 (409)
T 3h8l_A          232 GIKLVHNFKIKEIREH--E--IVDEKGNTIPADITILLPP  267 (409)
T ss_dssp             TCEEECSCCEEEECSS--E--EEETTSCEEECSEEEEECC
T ss_pred             CCEEEcCCceEEECCC--e--EEECCCCEEeeeEEEECCC
Confidence            6999999999999643  3  4566778999999999987

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.92  E-value=0.0016  Score=48.81  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||.|..|..+|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            579999999999999999999999999999974

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.89  E-value=0.0039  Score=56.78  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      ..+|+|||+|-+|.-++..|+++  +.+|+++=|..
T Consensus       246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            36899999999999999999886  78999998863

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.85  E-value=0.0016  Score=49.57  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|||+|..|..+|..|.+.|++|++++++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.85  E-value=0.0049  Score=54.93  Aligned_cols=38  Identities=3%  Similarity=0.087  Sum_probs=28.6

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEe--Cc-----cceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSE--NV-----KLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~--~~-----~~~~~ad~VV~AtG  253 (253)
                      |++++++++|++|+.  +.+.+..  .+     +.++.+|.||+|+|
T Consensus       222 gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g  266 (437)
T 3sx6_A          222 GIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPA  266 (437)
T ss_dssp             TCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECC
T ss_pred             CCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCC
Confidence            699999999999963  4454442  22     46789999999875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.79  E-value=0.0017  Score=47.95  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|..|.+.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999863

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.79  E-value=0.0032  Score=57.89  Aligned_cols=34  Identities=26%  Similarity=0.505  Sum_probs=31.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~  219 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP  219 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence            3689999999999999999999999999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.64  E-value=0.0022  Score=47.73  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|..|..+|..|.++|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.61  E-value=0.0029  Score=47.91  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|+|+|..|...|..|.+.|++|+++|++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            57999999999999999999999999999986

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.51  E-value=0.003  Score=45.07  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      ..|+|+|+|..|..++..|.+.| ++|++++++.
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            47999999999999999999999 9999999864

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=96.47  E-value=0.013  Score=49.19  Aligned_cols=32  Identities=13%  Similarity=0.041  Sum_probs=25.6

Q ss_pred             CcEEEECcCH-HHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGM-AGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~-~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+++|||||. .++.+|..+.+.|.+|+++++.
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~  179 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNWSTDLVIATNG  179 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCSCEEEECSS
T ss_pred             CceeeecCCCchhhhHHHHHHhCCceEEEEecc
Confidence            4677777774 5678888888889999999875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.36  E-value=0.0047  Score=51.91  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|++.|++|+++|++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            579999999999999999999999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.24  E-value=0.0052  Score=47.89  Aligned_cols=33  Identities=27%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|..|.+. |++|+++|++.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4799999999999999999999 99999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.20  E-value=0.0052  Score=45.36  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|..|..+|..|.+.|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999863

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.18  E-value=0.0051  Score=52.80  Aligned_cols=33  Identities=24%  Similarity=0.482  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..++.+|++|+++|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999854

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.97  E-value=0.0074  Score=51.09  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|++.|++|+++|++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.90  E-value=0.011  Score=50.84  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|..|++.|+ +|+++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.87  E-value=0.0099  Score=53.41  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .++.|||.|..|+.+|..|++.|++|++++++..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            7899999999999999999999999999999753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.87  E-value=0.0094  Score=50.93  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|...|..|++.|.+|++++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            479999999999999999999999999999863

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.83  E-value=0.0094  Score=54.06  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|+.+|..|++.|++|++++++.
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            689999999999999999999999999999863

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.83  E-value=0.011  Score=50.45  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|..|++.|+ +|+++|.+.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            579999999999999999999998 999999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.82  E-value=0.01  Score=51.16  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|++.|++|+++++..
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999863

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.81  E-value=0.0083  Score=48.18  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=30.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|||+|..|..+|..|.+.|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.74  E-value=0.013  Score=47.70  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|||||-+|...|..|.+.|.+|+|++..
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            68999999999999999999999999999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.73  E-value=0.011  Score=50.83  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||+|..|...|..|++.|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            47999999999999999999999999999984

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.68  E-value=0.012  Score=49.00  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|...|..|++.|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            58999999999999999999999999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.65  E-value=0.0099  Score=49.87  Aligned_cols=32  Identities=31%  Similarity=0.462  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|||||-+|+..|..|.+.|.+|+|++..
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            57999999999999999999999999999975

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.63  E-value=0.015  Score=46.46  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.62  E-value=0.017  Score=51.98  Aligned_cols=33  Identities=30%  Similarity=0.509  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|++.|++|+++|++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            479999999999999999999999999999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.62  E-value=0.01  Score=50.54  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|.+.|..|++.|.+|++++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999999999999863

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.61  E-value=0.014  Score=49.70  Aligned_cols=33  Identities=24%  Similarity=0.500  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|..|++.|+  +|++++++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999998  999999863

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.56  E-value=0.011  Score=49.94  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+|.|||.|..|...|..|++.|++|++++++..
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.54  E-value=0.019  Score=49.30  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|..|+..|+ +|+++|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            589999999999999999999998 999999764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.54  E-value=0.012  Score=52.77  Aligned_cols=33  Identities=33%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|.+|+++|..|.++|++|++.|++.
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            589999999999999999999999999999853

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.50  E-value=0.014  Score=52.41  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|+.+|..|++.|++|++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.47  E-value=0.015  Score=48.95  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|++.|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            379999999999999999999999999999853

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.44  E-value=0.02  Score=48.72  Aligned_cols=33  Identities=36%  Similarity=0.536  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|++.|++|+++++..
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999874

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.44  E-value=0.018  Score=50.85  Aligned_cols=35  Identities=34%  Similarity=0.506  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++|+.+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  186 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPR  186 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            36899999999999999999999999999998753

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.42  E-value=0.012  Score=52.57  Aligned_cols=34  Identities=41%  Similarity=0.576  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+|.|||.|.+|+++|..|.++|++|+++|....
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            5799999999999999999999999999998653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.41  E-value=0.018  Score=49.47  Aligned_cols=32  Identities=19%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|.|||+|..|...|..|++.|++|+++++.
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            68999999999999999999999999999985

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.39  E-value=0.018  Score=50.18  Aligned_cols=33  Identities=30%  Similarity=0.494  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999863

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=95.38  E-value=0.017  Score=50.86  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+|+|||+|..|+.+|..|.+.|.+|+++|+.+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  176 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPR  176 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            6899999999999999999999999999998753

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.37  E-value=0.018  Score=48.70  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|+ +|++|+++|+..
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            57999999999999999999 999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.35  E-value=0.021  Score=50.56  Aligned_cols=34  Identities=21%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3689999999999999999999999999999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.32  E-value=0.02  Score=49.91  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=31.6

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...+|.|||.|..|..+|..|++.|++|+++++..
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34689999999999999999999999999999863

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.31  E-value=0.023  Score=50.86  Aligned_cols=33  Identities=18%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|||.|..||.+|..|+++|++|+.+|-+.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            589999999999999999999999999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.31  E-value=0.022  Score=46.70  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|.++|..|++.|++|++++++.
T Consensus        20 ~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            689999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.31  E-value=0.019  Score=52.05  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=31.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc-CC-eEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR-GV-KSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~-g~-~v~~~e~~~~  124 (253)
                      .+|.|||+|..|+.+|..|+++ |+ +|+++|++..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999998753

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.30  E-value=0.021  Score=51.44  Aligned_cols=33  Identities=24%  Similarity=0.502  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.23  E-value=0.014  Score=49.28  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|...|..|++.|.+|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.22  E-value=0.026  Score=48.57  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|..|++.|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999998 999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.19  E-value=0.024  Score=47.95  Aligned_cols=33  Identities=33%  Similarity=0.397  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|++.|++|++++++.
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.17  E-value=0.024  Score=47.53  Aligned_cols=33  Identities=33%  Similarity=0.506  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|++.|++|++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            369999999999999999999999999999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.14  E-value=0.023  Score=49.81  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.09  E-value=0.011  Score=44.10  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|||+|..|..+|..|.+.|.+|+++++..
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            579999999999999999999999999999863

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.07  E-value=0.025  Score=48.28  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||+|..|...|..|++.|.+|+++ ++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            58999999999999999999999999999 65

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.05  E-value=0.03  Score=47.86  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=30.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ..+|.|||+|..|.++|+.|+..|+ +|+++|..
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            3589999999999999999999999 99999986

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.04  E-value=0.019  Score=51.27  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=30.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|+.+|..|++.|++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999863

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.04  E-value=0.026  Score=47.93  Aligned_cols=32  Identities=31%  Similarity=0.600  Sum_probs=29.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|+|||+|..|.++|+.|+..|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999998  999999853

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.01  E-value=0.035  Score=47.10  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|.+.|++|++++++.
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.97  E-value=0.028  Score=47.74  Aligned_cols=32  Identities=41%  Similarity=0.596  Sum_probs=29.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|..|...|..|+ .|.+|+++.++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 999999999864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.92  E-value=0.028  Score=49.39  Aligned_cols=34  Identities=35%  Similarity=0.439  Sum_probs=31.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      .+.+|+|+|||.+|+.+|..|...|. +|+++|+.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            44789999999999999999999999 99999986

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.89  E-value=0.03  Score=50.79  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|+++|++|+++|++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.88  E-value=0.025  Score=48.25  Aligned_cols=30  Identities=30%  Similarity=0.501  Sum_probs=28.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      +|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.88  E-value=0.029  Score=50.13  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|+.+|..|++ |++|+++|++.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            479999999999999999998 99999999864

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.86  E-value=0.029  Score=47.86  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|++.|++|+++++..
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            579999999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.82  E-value=0.031  Score=46.04  Aligned_cols=33  Identities=33%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999997 899999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.80  E-value=0.028  Score=47.81  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      .+|.|||.|..|...|..|++.|+ +|+++++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            579999999999999999999999 99999985

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=94.79  E-value=0.089  Score=46.61  Aligned_cols=49  Identities=6%  Similarity=0.069  Sum_probs=34.6

Q ss_pred             HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc--cceeecCEEEEcCC
Q 047483          202 RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV--KLRGQFDVVVIAHN  253 (253)
Q Consensus       202 ~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~--~~~~~ad~VV~AtG  253 (253)
                      ..+++.+.++. |+++++++.|++++  ++...+...+  +.++.+|.||.|+|
T Consensus       203 ~~~l~~~l~~~-GV~~~~~~~v~~v~--~~~~~~~~~~g~~~~i~~d~vi~~~G  253 (430)
T 3hyw_A          203 KRLVEDLFAER-NIDWIANVAVKAIE--PDKVIYEDLNGNTHEVPAKFTMFMPS  253 (430)
T ss_dssp             HHHHHHHHHHT-TCEEECSCEEEEEC--SSEEEEECTTSCEEEEECSEEEEECE
T ss_pred             HHHHHHHHHhC-CeEEEeCceEEEEe--CCceEEEeeCCCceEeecceEEEecc
Confidence            45555544443 69999999999985  3455555433  45799999999876

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.79  E-value=0.025  Score=47.78  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=29.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc-----C-CeEEEEcC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR-----G-VKSTVFDT  121 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~-----g-~~v~~~e~  121 (253)
                      .+|.|||+|..|...|..|++.     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3799999999999999999999     9 99999987

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.76  E-value=0.029  Score=47.08  Aligned_cols=33  Identities=36%  Similarity=0.494  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|++|++++++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999863

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.75  E-value=0.024  Score=47.45  Aligned_cols=32  Identities=28%  Similarity=0.456  Sum_probs=30.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999874

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.75  E-value=0.029  Score=50.56  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|+.+|..|++.  |++|++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  89999999863

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.73  E-value=0.044  Score=46.44  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|++|++++++.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.73  E-value=0.037  Score=44.41  Aligned_cols=33  Identities=33%  Similarity=0.393  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|++|++++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999863

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.72  E-value=0.034  Score=48.73  Aligned_cols=34  Identities=26%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      .+.+|+|+|+|.+|..+|..|...|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            44789999999999999999999998 89999986

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.68  E-value=0.052  Score=46.93  Aligned_cols=39  Identities=23%  Similarity=0.414  Sum_probs=33.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      ..|+|||||..|..+|+.+.+.|++|+++|.++......
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~   40 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQALIRN   40 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCChhHh
Confidence            469999999999999999999999999999876544433

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.67  E-value=0.028  Score=49.67  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=28.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|+.+|..|++ |++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999863

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.60  E-value=0.018  Score=51.86  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|+|+|-.|..+|..|.+.|++|+|+|+++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            479999999999999999999999999999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.60  E-value=0.038  Score=49.10  Aligned_cols=33  Identities=33%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||.|-.|..+|..|.+.|++|+++|++.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            479999999999999999999999999999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.58  E-value=0.023  Score=49.37  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|...|..|++.|++|+++++..
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999853

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.57  E-value=0.047  Score=46.85  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|.|||+|..|.++|+.|+..|+ +|+++|...
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            589999999999999999999998 999999864

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.52  E-value=0.046  Score=46.49  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=29.3

Q ss_pred             cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      +|+|||+|..|..+|..|++.  |.+|+++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            699999999999999999985  78999999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.51  E-value=0.033  Score=50.45  Aligned_cols=34  Identities=24%  Similarity=0.599  Sum_probs=31.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +.+|.|||.|..|..+|..|+++|++|+++++..
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3689999999999999999999999999999863

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.48  E-value=0.043  Score=46.98  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=30.0

Q ss_pred             CcEEEECcCHHHHH-HHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLA-CALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~-~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|.+|++ +|..|.++|++|++.|+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            57999999999996 8889999999999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.46  E-value=0.047  Score=48.25  Aligned_cols=34  Identities=35%  Similarity=0.481  Sum_probs=31.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3689999999999999999999999999999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.41  E-value=0.052  Score=46.64  Aligned_cols=32  Identities=31%  Similarity=0.596  Sum_probs=29.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      .+|+|||+|..|.++|+.|+..|+  +|+++|.+
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            589999999999999999999987  89999975

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.41  E-value=0.052  Score=45.17  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..++|+|+|-+|.++|..|++.|.+|+|+++.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            57999999999999999999999999999986

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=94.40  E-value=0.046  Score=49.29  Aligned_cols=33  Identities=33%  Similarity=0.598  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+++|||+|..|+.+|..|.+.|.+|+++++.+
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~  224 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD  224 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            589999999999999999999999999999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.40  E-value=0.042  Score=46.90  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC----CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG----VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g----~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|    ++|++++++.
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            47999999999999999999999    7999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.39  E-value=0.051  Score=47.26  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|.+|+.++..|...|.+|+++++..
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            679999999999999999999999999999863

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.37  E-value=0.054  Score=47.52  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=31.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|+|||+|.+|+.++..|...|.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.37  E-value=0.052  Score=46.39  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|+|||+|..|.++|+.|+..|.  +|+++|.+.
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            689999999999999999999987  999999764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.37  E-value=0.055  Score=46.11  Aligned_cols=33  Identities=33%  Similarity=0.412  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||.|..|.+.|..|.+.|+  +|+++++..
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            579999999999999999999999  999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.37  E-value=0.045  Score=43.40  Aligned_cols=32  Identities=28%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             cEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+||| +|..|...|..|.+.|++|++++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999999999999863

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.34  E-value=0.044  Score=46.83  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=29.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|+|||+|..|.++|..|++.|+  +|+++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999998  999999863

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.29  E-value=0.063  Score=45.99  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|.|||+|..|.++|+.|+..|+ +|+++|...
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            589999999999999999999988 999999864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.26  E-value=0.051  Score=45.07  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=29.8

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.26  E-value=0.04  Score=47.02  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|++.| ++|+++++..
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            47999999999999999999999 9999999874

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.22  E-value=0.049  Score=49.29  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|+.+|..|++.  |++|++++++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999998  79999999863

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.20  E-value=0.049  Score=44.75  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=29.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      +|.|||+|..|...|..|.+.| ++|+++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5899999999999999999999 9999999863

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.19  E-value=0.031  Score=44.99  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEE-EcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTV-FDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~-~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|++|++ ++++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            4799999999999999999999999999 88764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.18  E-value=0.058  Score=45.88  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|..|..+|+.|+..|+ +|+++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            479999999999999999999996 999999764

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.13  E-value=0.017  Score=47.20  Aligned_cols=32  Identities=31%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|.|||.|..|.++|..|.++|++|+++++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            57999999999999999999999999999874

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.12  E-value=0.059  Score=49.02  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|..+|..|+++|++|+++++..
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999999999999999999999999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.10  E-value=0.051  Score=45.86  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.||| .|..|.+.|..|++.|++|++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4799999 99999999999999999999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.09  E-value=0.044  Score=48.91  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+..|||.|..|+.+|..|+++|++|+++|++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468899999999999999999999999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.09  E-value=0.064  Score=46.76  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|..|+.+|..|+..|.+|+++++..
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999863

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.06  E-value=0.051  Score=46.12  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=29.6

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      +|+|||+|..|..+|..|++.|  .+|+++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  6999999863

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.04  E-value=0.044  Score=52.21  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999863

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.01  E-value=0.059  Score=48.86  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|..+|..|+++|++|+++++..
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.98  E-value=0.07  Score=46.12  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||.|..|.++|..|.+.|++|++++++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.97  E-value=0.06  Score=44.17  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC----CeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG----VKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g----~~v~~~e~~~~  124 (253)
                      .+|.|||+|..|...|..|.+.|    .+|+++++...
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            47999999999999999999999    79999998753

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.96  E-value=0.12  Score=45.14  Aligned_cols=35  Identities=37%  Similarity=0.593  Sum_probs=31.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ...|+|||+|..|..++..+.+.|++|++++....
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            35799999999999999999999999999997643

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.93  E-value=0.072  Score=44.12  Aligned_cols=33  Identities=27%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|+|..|..++..|.++|++|+++.+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999874

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.93  E-value=0.07  Score=44.34  Aligned_cols=32  Identities=34%  Similarity=0.427  Sum_probs=29.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|.|||+|..|.+.|..|.+.|+  +|++++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            69999999999999999999998  999999863

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.91  E-value=0.081  Score=44.13  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=31.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..+++|||+|-+|-++|+.|.+.|.+|+|+.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.90  E-value=0.069  Score=45.15  Aligned_cols=34  Identities=15%  Similarity=0.156  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ...|+|||+|-+|.++|..|.+.|. +|+|+.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 999999863

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.85  E-value=0.039  Score=47.53  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-------CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-------VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-------~~v~~~e~~~  123 (253)
                      .+|.|||+|..|.+.|..|++.|       ++|+++++..
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~   48 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE   48 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcCh
Confidence            37999999999999999999999       8999999864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.85  E-value=0.045  Score=47.68  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-------CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-------VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-------~~v~~~e~~~  123 (253)
                      .+|.|||+|..|.+.|..|++.|       .+|+++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~   61 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDE   61 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECCh
Confidence            36999999999999999999999       9999999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.83  E-value=0.078  Score=45.60  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||+|..|.++|+.|+..|+  +|+++|.+.
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            589999999999999999999997  899999753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.81  E-value=0.056  Score=45.19  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|...|..|.+.|++|++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.81  E-value=0.057  Score=45.21  Aligned_cols=33  Identities=33%  Similarity=0.388  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|++|.++++..
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999863

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.76  E-value=0.068  Score=44.63  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+ |..|...|..|.+.|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999 9999999999999999999999863

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.76  E-value=0.08  Score=46.34  Aligned_cols=34  Identities=32%  Similarity=0.408  Sum_probs=31.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|+|||+|..|..+|..|...|.+|+++++..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3679999999999999999999999999999863

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.75  E-value=0.082  Score=44.22  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC---eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV---KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~---~v~~~e~~~  123 (253)
                      .+|.|||+|..|.+.|..|.+.|+   +|++++++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            579999999999999999999998   999999864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.71  E-value=0.085  Score=42.35  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|| |..|..++..|.++|++|+++.|+.
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            57999998 9999999999999999999999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.70  E-value=0.059  Score=44.91  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..++|+|+|-+|.++|..|++.|.+|+|+.|.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999999999999999999999986

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.68  E-value=0.065  Score=48.17  Aligned_cols=32  Identities=28%  Similarity=0.205  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|||+|.+|...+..|.+.|.+|+|++..
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            57999999999999999999999999999974

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=93.67  E-value=0.068  Score=45.20  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=29.5

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|+|||+|..|.++|+.|++.|+  +|+++|...
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            59999999999999999999998  999999864

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=93.63  E-value=0.14  Score=44.64  Aligned_cols=35  Identities=40%  Similarity=0.592  Sum_probs=31.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ...|+|||+|..|..++..+.+.|++|++++....
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            36799999999999999999999999999998644

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.61  E-value=0.055  Score=45.75  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|-+||-|..|...|..|.++|++|+++++..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.61  E-value=0.051  Score=47.81  Aligned_cols=29  Identities=24%  Similarity=0.325  Sum_probs=27.6

Q ss_pred             cEEEECcCHHHHHHHHHHhH-cCCeEEEEc
Q 047483           92 HVGIIGGGMAGLACALSLDK-RGVKSTVFD  120 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e  120 (253)
                      +|.|||+|..|...|..|++ .|++|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            69999999999999999998 499999999

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.61  E-value=0.096  Score=44.67  Aligned_cols=33  Identities=24%  Similarity=0.551  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|+|||+|..|.++|+.|+..|.  +|.++|.+.
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            589999999999999999998875  899999853

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.59  E-value=0.08  Score=45.26  Aligned_cols=33  Identities=21%  Similarity=0.489  Sum_probs=29.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      ..+|+|||+|-.|.++|+.|+..+.  ++.++|.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            3689999999999999999999886  89999975

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.57  E-value=0.033  Score=45.07  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=29.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|..|...|..|.+.|+ |+++|++.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            579999999999999999999999 99999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.56  E-value=0.088  Score=43.45  Aligned_cols=33  Identities=12%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|+|..|..++..|.++|++|+++.+..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            479999999999999999999999999999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.52  E-value=0.074  Score=48.12  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|+++|++|+++++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            379999999999999999999999999999864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.52  E-value=0.072  Score=50.66  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..|++.|++|+++|++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999999864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.52  E-value=0.094  Score=45.01  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      .+|+|||+|..|.++|+.|+..|+  ++.++|..
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            589999999999999999999987  89999974

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.49  E-value=0.096  Score=42.74  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC----eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV----KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~----~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|+    +|.+++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            479999999999999999999998    999999864

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=93.47  E-value=0.096  Score=44.70  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=29.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      .+|+|||+|..|.++|+.|+.+|.  .|.++|.+
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            689999999999999999999885  89999975

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.45  E-value=0.12  Score=40.09  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.4

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|| |..|..++..|.++|++|+++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            46999998 9999999999999999999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.42  E-value=0.076  Score=48.02  Aligned_cols=32  Identities=34%  Similarity=0.657  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|...|..|+++|++|+++++..
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999863

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.41  E-value=0.085  Score=44.78  Aligned_cols=33  Identities=27%  Similarity=0.787  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||+|..|..+|+.|+.+|+  +|+++|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            579999999999999999999998  999999875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=93.40  E-value=0.088  Score=43.14  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|.+.|.+|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            479999999999999999999999999999863

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.39  E-value=0.11  Score=40.95  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|+|| |..|..++..|.++|++|+++.|+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            5899996 9999999999999999999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.37  E-value=0.086  Score=43.93  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|||+|-+|.+.|..|.+.|.+|+++++..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999999863

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.36  E-value=0.088  Score=47.54  Aligned_cols=33  Identities=21%  Similarity=0.536  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||.|..|...|..|+++|++|+++++..
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            579999999999999999999999999999863

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.33  E-value=0.067  Score=44.45  Aligned_cols=31  Identities=26%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|..|...|..|.+ |++|++++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999999864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=93.29  E-value=0.075  Score=43.65  Aligned_cols=30  Identities=33%  Similarity=0.353  Sum_probs=28.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      +|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            589999999999999999999999999876

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.28  E-value=0.11  Score=44.56  Aligned_cols=32  Identities=25%  Similarity=0.539  Sum_probs=29.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      .+|.|||+|..|.++|+.|+.+|+  +++++|..
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            689999999999999999999987  89999975

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.25  E-value=0.092  Score=41.74  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|| |..|..++..|.++|++|+++.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            47999995 9999999999999999999999874

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.21  E-value=0.099  Score=44.64  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=29.5

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|.|||+|..|.++|+.|+..|+  +|+++|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            58999999999999999999987  999999864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.21  E-value=0.11  Score=41.04  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|.|| |..|..++..|.++|++|+++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4899998 9999999999999999999999863

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.11  E-value=0.13  Score=46.57  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=31.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ....++|+|+|..|..+|..|+..|.+|+++|++.
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34679999999999999999999999999999853

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.11  E-value=0.14  Score=45.16  Aligned_cols=40  Identities=23%  Similarity=0.444  Sum_probs=33.4

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG  127 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g  127 (253)
                      |++...|+|+|+|..|..++..+.+.|++|.+++ ......
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~   60 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPA   60 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcH
Confidence            4445789999999999999999999999999999 543333

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.09  E-value=0.094  Score=43.15  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVK-STVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|++ |.++++..
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4799999999999999999999998 89999863

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.08  E-value=0.14  Score=44.30  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=29.1

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      .+|+|||+ |..|.++|+.|...|.  +|+++|.+
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            58999998 9999999999999985  89999975

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.00  E-value=0.13  Score=43.27  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|.|||.|..|..+|..|...|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4679999999999999999999999999999863

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.99  E-value=0.13  Score=43.45  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|.|||+|-.|..+|..|...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4679999999999999999999999999999863

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.99  E-value=0.12  Score=44.49  Aligned_cols=33  Identities=39%  Similarity=0.392  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||.|..|.+.|..|.+.|++|+++++..
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            469999999999999999999999999999864

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.92  E-value=0.13  Score=42.48  Aligned_cols=32  Identities=28%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .++|||+|-+|-++++.|.+.|. +|+|++|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            89999999999999999999998 999999863

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.90  E-value=0.11  Score=43.92  Aligned_cols=33  Identities=33%  Similarity=0.422  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            689999999999999999999996 899999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.86  E-value=0.13  Score=44.29  Aligned_cols=33  Identities=33%  Similarity=0.453  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|+..|+ +++|+|.+.
T Consensus        35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            689999999999999999999996 899999864

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.81  E-value=0.11  Score=43.53  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..++|+|+|-+|.++|..|++.| +|+++.+.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            57999999999999999999999 99999885

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=92.78  E-value=0.13  Score=42.33  Aligned_cols=32  Identities=28%  Similarity=0.437  Sum_probs=30.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|||+|-+|...|..|.+.|.+|+++++..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999863

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=92.75  E-value=0.12  Score=42.52  Aligned_cols=33  Identities=36%  Similarity=0.403  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            689999999999999999999997 899998753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=92.74  E-value=0.15  Score=42.80  Aligned_cols=34  Identities=35%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ...++|+|+|-+|.++++.|++.|. +|+|+.|..
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            3679999999999999999999998 799999863

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.70  E-value=0.1  Score=43.69  Aligned_cols=33  Identities=27%  Similarity=0.108  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..++|||+|-+|.++|+.|.+.|. +|+|+.|..
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            579999999999999999999998 899999864

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=92.69  E-value=0.15  Score=43.61  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            4679999999999999999999998 89999986

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=92.65  E-value=0.16  Score=42.37  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|..
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3679999999999999999999996 999999863

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=92.62  E-value=0.12  Score=44.25  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=29.9

Q ss_pred             CCcEEEECcC-HHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGG-MAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G-~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+++|||+| +.|..+|..|...|.+|+++++.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            4689999999 67999999999999999999875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=92.57  E-value=0.14  Score=42.74  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|.+.|..|.+.  |.+|++++++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4799999999999999999988  68999999863

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=92.52  E-value=0.15  Score=48.60  Aligned_cols=33  Identities=24%  Similarity=0.502  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|+.++..|++|+++|...
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            579999999999999999999999999999853

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=92.50  E-value=0.16  Score=42.65  Aligned_cols=34  Identities=21%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ...++|+|+|-+|.++|+.|.+.|. +|+|+.|..
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            3679999999999999999999996 999999863

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=92.46  E-value=0.17  Score=45.86  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ....|+|||.|..|..+|..|...|.+|+++|+..
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34679999999999999999999999999999863

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=92.46  E-value=0.14  Score=42.98  Aligned_cols=34  Identities=18%  Similarity=0.100  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ...++|+|+|-+|-++++.|.+.|. +|+|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3689999999999999999999998 899999863

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.45  E-value=0.14  Score=43.52  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|| |..|..++..|.++|++|+++.+..
T Consensus        20 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           20 HMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            57999998 9999999999999999999999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.37  E-value=0.14  Score=47.15  Aligned_cols=34  Identities=32%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .+|+|||+|-.|..+|..|.+.|++|+++|+++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            6899999999999999999999999999999864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.31  E-value=0.092  Score=43.78  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=29.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|..|.+.|++|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            379999999999999999999999999998 54

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=92.28  E-value=0.14  Score=43.46  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=28.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      +|.|||+|..|.++|+.|+..|+ +|.++|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999999888 699999864

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=92.26  E-value=0.18  Score=43.90  Aligned_cols=34  Identities=26%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ....|+|+|.|-.|..+|..|.+.|.+|++.|+.
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3467999999999999999999999999999975

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.23  E-value=0.18  Score=43.16  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=29.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      .+|+|||+|-.|.++|+.|+..++  ++.++|.+
T Consensus        10 ~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            689999999999999999998876  89999975

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=92.21  E-value=0.16  Score=44.79  Aligned_cols=33  Identities=33%  Similarity=0.376  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..|+|||+|..|..+|..|...|. +|+++++..
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            579999999999999999999998 999999863

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.20  E-value=0.23  Score=44.03  Aligned_cols=34  Identities=24%  Similarity=0.520  Sum_probs=31.0

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|+|||+|..|..++..+.+.|++|.+++...
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4689999999999999999999999999999754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.13  E-value=0.24  Score=41.89  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=30.1

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|| |..|..++..|.++|++|+++.+..
T Consensus        21 ~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            46999998 9999999999999999999999853

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=92.04  E-value=0.2  Score=42.68  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ...++|+|+|-+|-++|+.|++.|. +|+|+.|.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4679999999999999999999998 89999986

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=92.01  E-value=0.19  Score=41.76  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=29.8

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|.|| |..|-.++..|.++|++|+++-|++
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5999998 9999999999999999999998864

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.00  E-value=0.17  Score=43.81  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|+..|. +++|+|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            689999999999999999999997 899999863

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=91.98  E-value=0.21  Score=41.72  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=29.9

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..++|+| +|-+|.++|..|++.|.+|+++.+.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            5799999 8999999999999999999999886

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=91.97  E-value=0.13  Score=43.98  Aligned_cols=32  Identities=13%  Similarity=0.271  Sum_probs=29.0

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCC-------eEEEEcCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGV-------KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~-------~v~~~e~~  122 (253)
                      .+|+|+|| |..|..++..|.++|+       +|+++|..
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            47999998 9999999999999886       89999974

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=91.95  E-value=0.24  Score=41.89  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             CCcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|+|.|| |..|..++..|.++|++|+++.+..
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~   39 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLV   39 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCC
Confidence            357999995 9999999999999999999999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=91.93  E-value=0.23  Score=44.15  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ....|+|||.|..|..+|..|...|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            44689999999999999999999999999999753

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=91.82  E-value=0.21  Score=41.69  Aligned_cols=33  Identities=33%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|| |..|..++..|.++|++|+++.+..
T Consensus         8 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   41 (321)
T 3vps_A            8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLR   41 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCEEEEEecCC
Confidence            57999999 9999999999999999999999864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.70  E-value=0.24  Score=42.54  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ...|.|||.|..|..+|..|+..|++|+++++..
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            3579999999999999999999999999999864

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=91.60  E-value=0.2  Score=41.79  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      .+++|||+|-+|-++++.|.+.|. +|+|+.|.
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            579999999999999999999997 89999986

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=91.47  E-value=0.19  Score=42.48  Aligned_cols=33  Identities=33%  Similarity=0.389  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|-+||-|..|...|..|.++|++|+++++..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            479999999999999999999999999999864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=91.45  E-value=0.18  Score=42.93  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=28.9

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      +|+|||+ |..|..+|+.|++.|  .+|.++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            6999998 999999999999988  6899998753

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=91.41  E-value=0.26  Score=41.56  Aligned_cols=33  Identities=24%  Similarity=0.132  Sum_probs=30.3

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|| |..|..++..|.++|++|+++.+..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   37 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS   37 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence            46999998 9999999999999999999999864

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=91.32  E-value=0.31  Score=41.04  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=29.6

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|.|| |..|..++..|.++|++|+++.+.
T Consensus        12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A           12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57999998 999999999999999999999875

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=91.28  E-value=0.24  Score=41.24  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|| |..|..++..|.++|++|.++.|..
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            46999997 9999999999999999999999863

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=91.23  E-value=0.24  Score=42.81  Aligned_cols=33  Identities=27%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|+..|+ +++|+|.+.
T Consensus        37 ~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           37 SRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            689999999999999999999997 899999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	6e-12
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-11
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-11
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-11
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	5e-11
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	4e-10
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	4e-10
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	6e-10
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-07
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	7e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	7e-07
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	9e-07
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	1e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	2e-06
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	3e-06
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-06
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	8e-06
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-05
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	2e-05
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	6e-05
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	7e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	8e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	2e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-04
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-04
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	3e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	3e-04
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	3e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	4e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	5e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	7e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	9e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	9e-04
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	0.001
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.001
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.002
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	0.002
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	0.002
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.002
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	0.002
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.003
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.003
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.003
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.004

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 62.5 bits (150), Expect = 6e-12
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 1/154 (0%)

Query: 85  APVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDH 144
              S+  HV I+G GMAGL+ A  L   G + TV +      GGR+ T          + 
Sbjct: 25  KATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER-PGGRVRTYRNEEAGWYANL 83

Query: 145 AAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPL 204
                        E +  +  R      E       +                +      
Sbjct: 84  GPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKP 143

Query: 205 ADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN 238
           +++  +   +        +  L+  N  + L++ 
Sbjct: 144 SEAGKSAGQLYEESLGKVVEELKRTNCSYILNKY 177

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 61.7 bits (148), Expect = 1e-11
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
           V ++GGG++GLA A  L  RG  + + ++    LGG +GT  +       +     F   
Sbjct: 3   VAVVGGGISGLAVAHHLRSRGTDAVLLESSAR-LGGAVGTHALAGYL--VEQGPNSFLDR 59

Query: 153 DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFP 189
           +     L       G +R  +       V  +     
Sbjct: 60  EPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRS 96

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
           V +IG G++GLA A  L   G+  TVF+      GG++ +         +D  A   T +
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK-AGGKLRSVSQDGLI--WDEGANTMTES 60

Query: 153 DSRFHELVD 161
           +     L+D
Sbjct: 61  EGDVTFLID 69

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 60.7 bits (145), Expect = 2e-11
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 91  PHVGIIGGGMAGLACALSLDKRGVKS-TVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFF 149
           P V ++G GM+G++ A  L + G+    + +  +H +GGRM            +  A + 
Sbjct: 1   PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH-IGGRMHKTNFAGIN--VELGANWV 57

Query: 150 TVNDSRFHELVDGWLERGLVRPW 172
              +      +   +   L    
Sbjct: 58  EGVNGGKMNPIWPIVNSTLKLRN 80

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 59.4 bits (143), Expect = 5e-11
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           I+G G+ G  CA  L K   K  V +  NH +GG   T        I  + A  F  ND 
Sbjct: 6   IVGSGLFGAVCANELKKLNKKVLVIEKRNH-IGGNAYTEDCEGI-QIHKYGAHIFHTNDK 63

Query: 155 RFHELVDGWLE 165
              + V+  +E
Sbjct: 64  YIWDYVNDLVE 74

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 4e-10
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 86  PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHA 145
           P      V IIG G++GLA A  L   G+  T+ +  +  +GGR+ T   G      D  
Sbjct: 1   PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVATFRKGNYV--ADLG 57

Query: 146 AQFFT-VNDSRFHELVD 161
           A   T +  +    +  
Sbjct: 58  AMVVTGLGGNPMAVVSK 74

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 56.7 bits (136), Expect = 4e-10
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQP-LIFDHAAQFFT 150
            + I+G G +G      L ++G +  + D  +H +GG            ++  +    F 
Sbjct: 4   KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH-IGGNSYDARDSETNVMVHVYGPHIFH 62

Query: 151 VNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLA 210
            ++      V+   E               V GQ    P +       N       S   
Sbjct: 63  TDNETVWNYVNKHAEMMPYVNRVKAT----VNGQVFSLPINLHTI---NQFFSKTCSPDE 115

Query: 211 QTSMVSIVRPCWISNLQPFNGMWHLS 236
             ++++      I++ Q F     L 
Sbjct: 116 ARALIAEKGDSTIADPQTFE-EEALR 140

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 6e-10
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
           V ++GGG++G+A A  L   G+   V +  +  +GGR  T          D    +    
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDR-VGGRTYTLRNQK-VKYVDLGGSYVGPT 59

Query: 153 DSRFHELVD 161
            +R   L  
Sbjct: 60  QNRILRLAK 68

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 8/163 (4%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
             IIG G AGL CA  L K G   TVFD G       + +          +     +   
Sbjct: 7   NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66

Query: 153 DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT 212
           +  F +                  G      +             V  ++   D      
Sbjct: 67  NPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKY---- 122

Query: 213 SMVSIVRPCWISNLQPFNGMWHLSENVKLRG---QFDVVVIAH 252
               I+    +S ++       +   +++     Q   +++A 
Sbjct: 123 -GAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVAT 164

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 7e-07
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           ++G G+     +  L   G K    D  +H  GG   +  +      F          +S
Sbjct: 10  VLGTGITECILSGLLSVDGKKVLHIDKQDH-YGGEAASVTLSQLYEKFKQNPISKEERES 68

Query: 155 RFHELVDGWLER 166
           +F +  D  ++ 
Sbjct: 69  KFGKDRDWNVDL 80

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 24/163 (14%), Positives = 42/163 (25%), Gaps = 12/163 (7%)

Query: 84  TAPVSSDPH----VGIIGGGMAGLACALSLDKRGVKSTVFD--------TGNHGLGGRMG 131
            A ++S PH    V ++G G AG + A+S    G K  + +              G    
Sbjct: 6   QAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAA 65

Query: 132 TRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSS 191
                    I D     F         + D  L + L    +  +  +   G        
Sbjct: 66  WTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGM 125

Query: 192 PPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH 234
                     RP   + +    +  +       N+        
Sbjct: 126 MGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG 168

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 9e-07
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQ 138
           ++G G+     +  +   G K    D   +  GG   +     +
Sbjct: 11  VLGTGLTECILSGIMSVNGKKVLHMDRNPY-YGGESSSITPLEE 53

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 89  SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGP 137
           +   + ++GG ++GL  AL L   GV   V++     L G     ++ P
Sbjct: 3   TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQP 51

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 1/95 (1%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG-TRMIGPQPLIFDHAA 146
            S   V ++G G+ GL+ AL L ++G    +                             
Sbjct: 4   HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTL 63

Query: 147 QFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEV 181
                           W+E         + G    
Sbjct: 64  TDGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRF 98

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 14/106 (13%)

Query: 86  PVSSDPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFD 143
              +   V I+G G +GL+ A  + K    +K  + ++     GG      +    ++  
Sbjct: 46  DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRK 105

Query: 144 HAAQFFTVNDSRFHE------------LVDGWLERGLVRPWEGVIG 177
            A  F    +  + +             +   L + L  P   +  
Sbjct: 106 PAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFN 151

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
           V +IGGG +GL  A+   + G    + D GN  LG ++     G   +           +
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK-LGRKLAISGGGRCNVTNRLPLDEIVKH 63

Query: 153 DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSL 208
                           +   E +I   E  G           +   N  + + D+L
Sbjct: 64  IPGNGRF---LYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDAL 116

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.4 bits (101), Expect = 8e-06
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 91  PHVGIIGGGMAGLACALSLDK--RGVKSTVFDTGNHGLGGRM 130
           P + ++G G AG   A  L K        +++       G +
Sbjct: 2   PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV-PFGLV 42

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFD 120
           V IIG G +GL     L K G+ + + +
Sbjct: 5   VAIIGAGPSGLLLGQLLHKAGIDNVILE 32

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
           S+   V ++G G  G+A    L K+GVK+ + D  +     
Sbjct: 1   STHFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTN 41

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG 127
             +IGGG+ G A A  L K    + +F++G  G  
Sbjct: 7   AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR 41

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 79  EQVTFTAPVSSDPH----VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRM 134
           +Q      +++ P     V ++G G AG   +L+  K G    + D       G      
Sbjct: 4   DQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAP--FSGGNSMIS 61

Query: 135 IGPQPLIFDHAAQFFTVNDSRFHELVD 161
            G    +         V D     + D
Sbjct: 62  AGGMNAVGTKQQTAHGVEDKVEWFIED 88

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 91  PHVGIIGGGMAGLACALSLDKRGVKS-TVFDTGNHGLGG 128
           P + IIG G+ G   A  L  RG  + TV D G   + G
Sbjct: 2   PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPG 40

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 41.1 bits (95), Expect = 6e-05
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           IIG G AGLA A+S    G K  + +     + G       G              + D 
Sbjct: 28  IIGSGGAGLAAAVSARDAGAKVILLEKEP--IPGGNTKLAAGGMNAAETKPQAKLGIEDK 85

Query: 155 RFHELVDGW 163
           +   + D  
Sbjct: 86  KQIMIDDTM 94

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (92), Expect = 7e-05
 Identities = 12/83 (14%), Positives = 24/83 (28%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
           V I+G G AG A A+   ++G+++ +      G                 +       + 
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 153 DSRFHELVDGWLERGLVRPWEGV 175
                  VD    +   +     
Sbjct: 64  VHVDEYDVDVIDSQSASKLIPAA 86

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 68  RRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGL 126
           + S + +   +  +T      ++  V ++G G AGL+ A  + K   V+  + +      
Sbjct: 12  KESIVSREMTRRYMT-DMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG 70

Query: 127 GGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW 163
           GG      +    ++   A  F       + E     
Sbjct: 71  GGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYV 107

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFD 120
            V +IG G+ GL+ AL + +R        
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPL 30

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           ++GGG  G + A +    G+K  + +      G  +    I  + L+ + A      + +
Sbjct: 11  VLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLA 70

Query: 155 RF-HELVDGWLERGLVRPW-EGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT 212
               +  +  L+  ++R + +GV+  L  GG      S     I  +G       L    
Sbjct: 71  ANGIKYPEPELDIDMLRAYKDGVVSRL-TGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSL 129

Query: 213 SMVSIVRPCWI 223
           +          
Sbjct: 130 TAGDAYEQAAP 140

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKS-TVFD 120
            + I G G+ GL+CAL+L + G+   T+ +
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLE 32

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG------GRMGTRMIGPQPLIFDHAAQF 148
           +IGGG+AGL  A++  ++G+ + V               G M   +   +    D+    
Sbjct: 10  VIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLH 69

Query: 149 FTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPF 188
           F           D  + R  V      I EL       P+
Sbjct: 70  FMDTVKGSDWGCDQKVARMFVNTAPKAIRELA--AWGVPW 107

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
           V ++G G +GL     L + G    V +T    +GG
Sbjct: 10  VLVVGAGFSGLYALYRLRELGRSVHVIETAG-DVGG 44

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKS-TVFD 120
           + ++G G A ++CA  L + G    T+F+
Sbjct: 7   IALLGAGPASISCASFLARLGYSDITIFE 35

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 9/91 (9%), Positives = 26/91 (28%), Gaps = 7/91 (7%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
           + I+G G AG   A+   +  ++  +         G      +     + +       + 
Sbjct: 8   LLILGSGPAGYTAAVYAARANLQPVLIT-------GMEKGGQLTTTTEVENWPGDPNDLT 60

Query: 153 DSRFHELVDGWLERGLVRPWEGVIGELEVGG 183
                E +     +         I ++++  
Sbjct: 61  GPLLMERMHEHATKFETEIIFDHINKVDLQN 91

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 17/147 (11%), Positives = 41/147 (27%), Gaps = 2/147 (1%)

Query: 88  SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147
           +++ +V I+G G+AG+  A  L   G +  +   G+  +           +  +   A  
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH--LPPLSKAYLAGKATA 58

Query: 148 FFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADS 207
                 +            G  +         +V              +   G   + + 
Sbjct: 59  ESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNC 118

Query: 208 LLAQTSMVSIVRPCWISNLQPFNGMWH 234
            LA  + + +     I+     +    
Sbjct: 119 ELASAAGLQVDNGIVINEHMQTSDPLI 145

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 11/93 (11%)

Query: 92  HVGIIGGGMAGLACALSLDKRG-------VKSTVFDTGNHGLGGRMGTRMIGPQPLIF-- 142
           ++ I+G G +    A SL K         +   + +       G + + +    P I   
Sbjct: 4   YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT-PWGLVRSGVAPDHPKIKSI 62

Query: 143 -DHAAQFFTVNDSRFHELVDGWLERGLVRPWEG 174
                +       RF   V            E 
Sbjct: 63  SKQFEKTAEDPRFRFFGNVVVGEHVQPGELSER 95

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 5/33 (15%)

Query: 93  VGIIGGGMAGLACALSL-----DKRGVKSTVFD 120
           V I+G G AGL  A  L      K  +K  + D
Sbjct: 10  VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 42

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.1 bits (85), Expect = 9e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQF 148
           IIGGG  G   A+   + G K+T  +     LGG        P   +   +  +
Sbjct: 8   IIGGGPGGYVAAIKAAQLGFKTTCIEKRGA-LGGTCLNVGCIPSKALLHSSHMY 60

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 9e-04
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           ++G G  G   A+   + G K T+ + GN G G  +    I  + LI          +  
Sbjct: 8   VVGAGPGGYVAAIRAAQLGQKVTIVEKGNLG-GVCLNVGCIPSKALISASHRYEQAKHSE 66

Query: 155 RFHELVDGW--LERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIG 197
                 +        +      V+ +L  G +     +      G
Sbjct: 67  EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKG 111

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 5/144 (3%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKS--TVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT 150
           + IIG G +GL  A +L         T+F+      GG           L         T
Sbjct: 7   IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG-SPGGVWNYTSTLSNKLPVPSTNPILT 65

Query: 151 VNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLA 210
                    +  +              EL        F     ++   + ++       A
Sbjct: 66  TEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQ-SFKPQTLQFPHRHTIQEYQRI-YA 123

Query: 211 QTSMVSIVRPCWISNLQPFNGMWH 234
           Q  +  I     + +++  +G W 
Sbjct: 124 QPLLPFIKLATDVLDIEKKDGSWV 147

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           IIGGG  G   A+   + G+ + + +     LGG        P   +   A QF     S
Sbjct: 10  IIGGGPGGYVAAIRAGQLGIPTVLVEGQA--LGGTCLNIGCIPSKALIHVAEQFH--QAS 65

Query: 155 RFHELVDGWLERGLVRPW 172
           RF E     +     R  
Sbjct: 66  RFTEPSPLGISVASPRLD 83

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 22/165 (13%), Positives = 42/165 (25%), Gaps = 13/165 (7%)

Query: 93  VGIIGGGMAGLACALSL----DKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF------ 142
           + IIGGG +G   A          G+K T+ +       G +   +      I       
Sbjct: 24  ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSE 83

Query: 143 --DHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVI-GELEVGGQFTPFPSSPPKYIGVN 199
             +    +          L    L     R  +G +    + G      P       G  
Sbjct: 84  RQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQW 143

Query: 200 GMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQ 244
            +    +S     +  + +     +  +       L +N      
Sbjct: 144 QIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAV 188

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128
           +IG G AG+  AL + + G    +          
Sbjct: 12  VIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH 45

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 75  TFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG 127
               E      P     ++ ++G G AGLA A++   RG + T+FD  +   G
Sbjct: 28  RACHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG 80

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 93  VGIIGGGMAGLACALSLDKRGVKSTVFD 120
           + I+G G A    A+   +  +K  +F+
Sbjct: 8   LCIVGSGPAAHTAAIYAARAELKPLLFE 35

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
           IIGGG AG   A+   + G  +   +     LGG  
Sbjct: 10  IIGGGPAGYVAAIKAAQLGFNTACVEKRGK-LGGTC 44

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           IIGGG  GLA A    K   K  V D              +G   +      +      +
Sbjct: 8   IIGGGSGGLAAAKEAAKFDKKVMVLDFVTP--TPLGTNWGLGGTCVNVGCIPKKLMHQAA 65

Query: 155 RFHELVDGW 163
              + +   
Sbjct: 66  LLGQALKDS 74

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVND 153
            IGGG AG   +  L   G +  + D     LGG        P  L  D AA+      
Sbjct: 47  FIGGGAAGRFGSAYLRAMGGRQLIVDRWPF-LGGSCPHNACVPHHLFSDCAAELMLART 104

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 92  HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124
            V ++G G+A ++    L + G +  +   G+ 
Sbjct: 5   PVVVLGAGLASVSFVAELRQAGYQGLITVVGDE 37

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 12/69 (17%), Positives = 20/69 (28%)

Query: 95  IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
           +IG G  G   A+   + G+K+ + +      G             I   A    +    
Sbjct: 8   VIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFH 67

Query: 155 RFHELVDGW 163
             HE     
Sbjct: 68  EAHESFKLH 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.75
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.74
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.72
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.71
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.7
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.7
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.7
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.7
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.68
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.66
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.64
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.61
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.59
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.57
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.51
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.47
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.46
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.42
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.42
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.39
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.39
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.35
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.35
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.34
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.34
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.32
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.3
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.29
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.28
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.27
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.24
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.24
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.22
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.21
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.21
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.21
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.2
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.2
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.17
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.17
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.17
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.14
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.14
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.12
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.11
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.11
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.11
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.1
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.1
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.09
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.09
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.03
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.96
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.96
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.93
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.88
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.87
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.86
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.85
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.82
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.8
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.75
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.74
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.71
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.68
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.67
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.67
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.66
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.65
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.62
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.6
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.6
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.59
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.57
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.54
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.53
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.5
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.5
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.46
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.44
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.31
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.31
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.28
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.23
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.18
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.15
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.14
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.13
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.08
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.99
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.86
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.61
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.57
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.5
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.38
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.34
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.19
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.14
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.11
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.98
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.94
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.89
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.83
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.79
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.67
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.65
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.64
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.63
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.58
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.57
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.32
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.3
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.25
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.23
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.97
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.92
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.9
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.88
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.8
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.74
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.71
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.67
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.67
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.61
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.57
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.54
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.53
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.51
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.47
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.46
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.37
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.3
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.29
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.22
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.1
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.92
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.9
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.79
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.76
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.73
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.62
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.61
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.45
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.45
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.41
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.18
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.12
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.98
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.92
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.83
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.81
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.77
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.73
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.68
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.57
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.55
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.47
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.44
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.42
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.29
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.22
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.02
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.95
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.94
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.92
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.62
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	92.53
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.07
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.03
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.86
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	91.83
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.59
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.12
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.82
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.7
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	90.56
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.99
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.88
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.77
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.67
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.27
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.24
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	89.03
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.69
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	88.63
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.42
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.39
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	88.0
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.0
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.5
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.43
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.4
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.29
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.24
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	87.1
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	86.82
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.72
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	86.35
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	85.75
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.74
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	85.72
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.68
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.52
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.39
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	84.74
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.67
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.61
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	84.51
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.25
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.96
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	83.78
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.67
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	83.65
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.61
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.46
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	83.33
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	83.26
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	83.18
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.07
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	82.88
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	82.85
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	82.74
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	82.57
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	82.49
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	82.23
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	82.19
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.86
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	81.68
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.55
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.54
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	81.46
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	81.3
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	81.23
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	81.23
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.18
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	80.79
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	80.69
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.46
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.41
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	80.41
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	80.3
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	80.16
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	80.15

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.75  E-value=2.3e-18  Score=141.74  Aligned_cols=153  Identities=21%  Similarity=0.232  Sum_probs=83.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccccc-CCC---ccccccccceeccCchhHHHHHHhhhh
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMI-GPQ---PLIFDHAAQFFTVNDSRFHELVDGWLE  165 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      ++||+|||||++||++|+.|+++|++|+||||+.. .|++...... ...   ....+...................+..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK-LGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC-CCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            48999999999999999999999999999999853 5543211000 000   000000000000011111111111000


Q ss_pred             cccccccccccc---ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEE-EEeCc
Q 047483          166 RGLVRPWEGVIG---ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWH-LSENV  239 (253)
Q Consensus       166 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~-v~~~~  239 (253)
                      . ....|....+   .....+..++...         ....+.+.|.+++.  +++|+++++|++|..+++.+. +.+++
T Consensus        81 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~  150 (251)
T d2i0za1          81 E-DIITFFENLGVKLKEEDHGRMFPVSN---------KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQT  150 (251)
T ss_dssp             H-HHHHHHHHTTCCEEECGGGEEEETTC---------CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT
T ss_pred             H-HHHHHHHhcCCccccccccceecccc---------cHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCC
Confidence            0 0001100000   0111122222222         22445555444332  799999999999998888764 66778


Q ss_pred             cceeecCEEEEcCC
Q 047483          240 KLRGQFDVVVIAHN  253 (253)
Q Consensus       240 ~~~~~ad~VV~AtG  253 (253)
                      +..++||.||+|||
T Consensus       151 g~~i~a~~vI~AtG  164 (251)
T d2i0za1         151 GEVLETNHVVIAVG  164 (251)
T ss_dssp             CCEEECSCEEECCC
T ss_pred             CCeEecCeEEEccC
Confidence            88999999999998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.74  E-value=3e-18  Score=145.60  Aligned_cols=134  Identities=15%  Similarity=0.133  Sum_probs=93.2

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ..+||+|||||++||++|+.|.++|++|+||||++ .+||.|....++..  ..+.....+......  ...        
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~-~iGGtW~~n~ypg~--~~d~~~~~~~~s~~~--~~~--------   72 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG-DVGGVWYWNRYPGA--RCDIESIEYCYSFSE--EVL--------   72 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCTHHHHCCCTTC--BCSSCTTTSSCCSCH--HHH--------
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC-CcccccccCCCCCc--eeccccccccccccc--ccc--------
Confidence            34899999999999999999999999999999986 59998865544422  222211111111000  000        


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEe--CCeEEEEeCccceeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPF--NGMWHLSENVKLRGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~--~~~~~v~~~~~~~~~a  245 (253)
                                        ....+...+.....+.++++.+++++. .-.|+++++|++++.+  .+.|.|.+.++..+++
T Consensus        73 ------------------~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~  134 (298)
T d1w4xa1          73 ------------------QEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRA  134 (298)
T ss_dssp             ------------------HHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEE
T ss_pred             ------------------CCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccccccc
Confidence                              001122223333456788888888875 1269999999999865  4579999988899999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       135 ~~~i~atG  142 (298)
T d1w4xa1         135 RYLIMASG  142 (298)
T ss_dssp             EEEEECCC
T ss_pred             ceEEEeec
Confidence            99999998

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.72  E-value=3.8e-17  Score=135.90  Aligned_cols=68  Identities=26%  Similarity=0.562  Sum_probs=55.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ||+|||||++||++|+.|+++|++|+|||+++ .+||+..+....  +..+|.|.+++....+.+.++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~-~~GG~~~t~~~~--g~~~d~G~~~~~~~~~~~~~l~~~   69 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA-RLGGAVGTHALA--GYLVEQGPNSFLDREPATRALAAA   69 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS-SSBTTCCEEEET--TEEEESSCCCEETTCHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC-CCCceEEEEeeC--CEEEecCceEEecCCHHHHHHHHH
Confidence            89999999999999999999999999999986 599998765543  567788877776666655555544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.71  E-value=1.2e-17  Score=138.17  Aligned_cols=150  Identities=19%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc----cc-cCCCccccccccceeccCchhHHHHHHhh
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT----RM-IGPQPLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +.+||+|||||++||++|+.|+++|++|+||||+.. +|.++..    .. +.....   ....+.......+...+..+
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~-~G~k~~~sGgG~~n~~n~~~---~~~~~~~~~~~~~~~~l~~~   78 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK-IGRKILMSGGGFCNFTNLEV---TPAHYLSQNPHFVKSALARY   78 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCHHHHHGGGGTCCCEESSC---CGGGEECSCTTSTHHHHHHS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC-CCCceEecCCccccccCccc---CchhhhccChHHHHHHhhhh
Confidence            348999999999999999999999999999999853 5532210    00 000000   00111111112222222221


Q ss_pred             hhccccccccccccce--eeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe----EEE
Q 047483          164 LERGLVRPWEGVIGEL--EVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM----WHL  235 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~----~~v  235 (253)
                      ........+......+  ...+.+++          ...-..+.+.|.+.+.  +++|+++++|++|++.++.    +.+
T Consensus        79 ~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~  148 (253)
T d2gqfa1          79 TNWDFISLVAEQGITYHEKELGQLFC----------DEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVL  148 (253)
T ss_dssp             CHHHHHHHHHHTTCCEEECSTTEEEE----------TTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEE
T ss_pred             cccchhhhhhhcCcceeeecCCcccc----------ccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEE
Confidence            1111111111110011  11112222          1112344444433322  6999999999999987654    333


Q ss_pred             EeCccceeecCEEEEcCC
Q 047483          236 SENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       236 ~~~~~~~~~ad~VV~AtG  253 (253)
                       .+++.+++||.||+|||
T Consensus       149 -~~~~~~~~a~~VIiAtG  165 (253)
T d2gqfa1         149 -QVNSTQWQCKNLIVATG  165 (253)
T ss_dssp             -EETTEEEEESEEEECCC
T ss_pred             -ecCCEEEEeCEEEEcCC
Confidence             45667899999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.70  E-value=5.7e-17  Score=137.16  Aligned_cols=72  Identities=26%  Similarity=0.334  Sum_probs=58.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +.+|+|||||++||++|+.|+++|++|+|||+++ .+||+..+......++.+|.|..++......+.+++++
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~-~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~  101 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE-RPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRK  101 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS-SSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCCeeEEEecCCCCceeccCceeecCccHHHHHHHHH
Confidence            4689999999999999999999999999999985 59999887666656677788777776555555555544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-16  Score=135.46  Aligned_cols=70  Identities=24%  Similarity=0.407  Sum_probs=56.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ||+|||||++||++|+.|+++|++|+|||+++ .+||++.+.... .+..+|.|.+++......+.++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~-~~GGr~~t~~~~-~g~~~d~G~~~~~~~~~~~~~l~~~l   70 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD-RVGGRTYTLRNQ-KVKYVDLGGSYVGPTQNRILRLAKEL   70 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS-SSBTTCCEECCT-TTSCEESSCCEECTTCHHHHHHHHHT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC-CCcceeeEEECC-CCcEEeCCceEeCCCChHHHHHHHHc
Confidence            89999999999999999999999999999986 599988765432 24567888888776666666665543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.70  E-value=1.6e-17  Score=138.28  Aligned_cols=52  Identities=8%  Similarity=-0.066  Sum_probs=42.1

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...+++.|.+.+  .|++|+++++|++|+++++.|.|.+++ +++.||.||+|+|
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~-g~i~a~~vV~AaG  203 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPS-GDVWANHVVVASG  203 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETT-EEEEEEEEEECCG
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCC-eEEEcCEEEECCC
Confidence            455666655533  279999999999999988889887766 5899999999997

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.70  E-value=3.1e-17  Score=141.05  Aligned_cols=159  Identities=14%  Similarity=0.088  Sum_probs=88.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      .+|+|||||++||++|+.|+++|  .+|+||||+. .+||.|..................+.............  ....
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~-~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~   81 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG-SPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPV--YPSP   81 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS-SSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCB--CCCC
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC-CCCCcccccCCCCcccCCcccccccccccccccccccc--cccc
Confidence            58999999999999999998876  5999999986 59998754333221111111000000000000000000  0000


Q ss_pred             cccccc-cccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc------c
Q 047483          169 VRPWEG-VIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK------L  241 (253)
Q Consensus       169 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~------~  241 (253)
                      ...+.. ........-...+++.+.+.|.....+.++++.+++... ..|++|++|++|++++++|.|+..+.      .
T Consensus        82 ~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~-~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~  160 (335)
T d2gv8a1          82 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL-PFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  160 (335)
T ss_dssp             CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGG-GGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             cchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhh-hcccCceEEEEEEecCCEEEEEEEecCCCCeEE
Confidence            000000 000000000112334444455554456666666666543 78999999999999999999874321      2


Q ss_pred             eeecCEEEEcCC
Q 047483          242 RGQFDVVVIAHN  253 (253)
Q Consensus       242 ~~~ad~VV~AtG  253 (253)
                      ...||+||+|||
T Consensus       161 ~~~~d~VI~AtG  172 (335)
T d2gv8a1         161 KDIFDAVSICNG  172 (335)
T ss_dssp             EEEESEEEECCC
T ss_pred             EEEeeEEEEccc
Confidence            457999999998

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.68  E-value=7.4e-17  Score=134.78  Aligned_cols=52  Identities=2%  Similarity=-0.056  Sum_probs=42.3

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...++..|.+.+  .|++++++++|++|+.++++|.|.+++ ++++||.||+|+|
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~-g~i~a~~VViAaG  202 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETAN-GSYTADKLIVSMG  202 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETT-EEEEEEEEEECCG
T ss_pred             ccccccccccccccccccccCCcEEEEEEEECCEEEEEECC-cEEEcCEEEECCC
Confidence            355666655433  379999999999999999999988766 5899999999997

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=5.4e-16  Score=125.25  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=40.4

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      |..++||||||||++||++|+.|+++|++|+||||++ .+||++.+
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~-~~GG~~~t   46 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQD-HYGGEAAS   46 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCGGGCE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC-CCCcceEE
Confidence            4566999999999999999999999999999999986 58997754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.61  E-value=3.5e-15  Score=125.84  Aligned_cols=52  Identities=13%  Similarity=0.079  Sum_probs=40.5

Q ss_pred             hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEEEcCC
Q 047483          201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~AtG  253 (253)
                      ...++..|.+.+  .|++|+++++|++|+.+++++. |.+ ++++++||+||+|+|
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T-~~g~i~a~~VV~aaG  201 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQT-ADGVIPADIVVSCAG  201 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECCG
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEec-cceeEECCEEEEecc
Confidence            455655555433  2799999999999999988865 555 456899999999997

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.59  E-value=1.2e-14  Score=120.40  Aligned_cols=66  Identities=32%  Similarity=0.528  Sum_probs=50.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHH
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHEL  159 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      .+|+|||||++||+||+.|+++|++|+|||+++ .+||++.+...+  ++.+|.|.+++....+.+.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~-~~GG~~~t~~~~--g~~~d~G~~~~~~~~~~~~~~   67 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG-KAGGKLRSVSQD--GLIWDEGANTMTESEGDVTFL   67 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS-SSCSSCCEEEET--TEEEESSCCCBCCCSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC-CCcCceEEeccC--CEEEecCceEEeCCCHHHHHH
Confidence            479999999999999999999999999999985 599988765543  455566655554444443333

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.57  E-value=1.8e-14  Score=118.44  Aligned_cols=139  Identities=14%  Similarity=0.197  Sum_probs=82.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++||++|+.|+++|++|+||||+.. .+...+.      ++.+         . +.-...++.+   +...
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~-~~~~~~~------g~~~---------~-~~~~~~l~~~---g~~~   64 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ-PLSGFGT------GIVV---------Q-PELVHYLLEQ---GVEL   64 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SCCCCSC------EEEC---------C-HHHHHHHHHT---TCCG
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC-CCCCCce------EEEE---------C-ccHHHHHHHc---Ccch
Confidence            6899999999999999999999999999999753 3222111      0000         0 1111122221   1111


Q ss_pred             cccc----ccccee-eCC-eeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceee
Q 047483          171 PWEG----VIGELE-VGG-QFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQ  244 (253)
Q Consensus       171 ~~~~----~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~  244 (253)
                      +...    ...... ..+ ......... .   ......+...+.....+..++++++|++++..++.|+++++++.+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~  140 (265)
T d2voua1          65 DSISVPSSSMEYVDALTGERVGSVPADW-R---FTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAE  140 (265)
T ss_dssp             GGTCBCCCEEEEEETTTCCEEEEEECCC-C---EEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEE
T ss_pred             hhhccCCCcceeEeccCCceeccccccc-c---cchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEE
Confidence            1000    000000 000 000000000 0   01134445555555556899999999999999999999999999999


Q ss_pred             cCEEEEcCC
Q 047483          245 FDVVVIAHN  253 (253)
Q Consensus       245 ad~VV~AtG  253 (253)
                      +|+||.|+|
T Consensus       141 ~d~~v~adG  149 (265)
T d2voua1         141 ANWVIGADG  149 (265)
T ss_dssp             ESEEEECCC
T ss_pred             EEEEecccc
Confidence            999999998

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.51  E-value=1.1e-13  Score=116.83  Aligned_cols=39  Identities=28%  Similarity=0.520  Sum_probs=34.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      .++||+|||+|++||++|+.|+++|++|+||||... .||
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~-~gG   53 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV-IGG   53 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC-CCC
Confidence            348999999999999999999999999999999863 444

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.47  E-value=1.7e-13  Score=110.74  Aligned_cols=57  Identities=25%  Similarity=0.543  Sum_probs=46.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCCCCCCCCccccccCCCccccccccceec
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT  150 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      +||+|||||++||++|+.|+++|+ +|+||||++ .+||++.+...+  +..+|.|.+++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~-~~GG~~~t~~~~--g~~~d~G~~~~~   58 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD-HIGGRMHKTNFA--GINVELGANWVE   58 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS-SSBTTSCEEEET--TEEEESSCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC-CCCceEEEeccC--CEEEecCCeEEe
Confidence            489999999999999999999997 699999985 599998765543  455666655543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.46  E-value=4.8e-13  Score=113.66  Aligned_cols=38  Identities=39%  Similarity=0.538  Sum_probs=34.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      .+||+|||+|++||++|+.|+++|++|+||||... .||
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~-~gG   60 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI-PGG   60 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS-SCT
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC-CCC
Confidence            38999999999999999999999999999999853 554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=3.4e-13  Score=111.25  Aligned_cols=44  Identities=11%  Similarity=0.015  Sum_probs=35.9

Q ss_pred             hhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc----ceeecCEEEEcCC
Q 047483          210 AQTSMVSIVRPCWISNLQPFNGMWHLSENVK----LRGQFDVVVIAHN  253 (253)
Q Consensus       210 ~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~----~~~~ad~VV~AtG  253 (253)
                      +...++.+.++++|+.+...++++.+...++    .++.+|+||.|+|
T Consensus       116 ~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG  163 (288)
T d3c96a1         116 ERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADG  163 (288)
T ss_dssp             HHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCC
T ss_pred             HhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCC
Confidence            3334689999999999999999888775443    4789999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.3e-12  Score=95.05  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=71.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+. ....                      .++                
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~-~l~~----------------------~d~----------------   62 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA-PLPS----------------------FDP----------------   62 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTT----------------------SCH----------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch-hhhh----------------------cch----------------
Confidence            5799999999999999999999999999999752 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHH-HHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCccceeecCEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPL-ADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENVKLRGQFDVV  248 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~~~ad~V  248 (253)
                                                   .+.+. .+.|.++  |+++++++.|+.++.+++ .+.++.+++.++.+|.|
T Consensus        63 -----------------------------~~~~~~~~~l~~~--GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~v  111 (116)
T d1gesa2          63 -----------------------------MISETLVEVMNAE--GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCL  111 (116)
T ss_dssp             -----------------------------HHHHHHHHHHHHH--SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEE
T ss_pred             -----------------------------hhHHHHHHHHHHC--CCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEE
Confidence                                         01222 2333333  699999999999988754 47788888889999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|+|
T Consensus       112 i~a~G  116 (116)
T d1gesa2         112 IWAIG  116 (116)
T ss_dssp             EECSC
T ss_pred             EEecC
Confidence            99998

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.39  E-value=1.3e-12  Score=110.88  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=34.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+|++||++|+.|+++|.+|+|+||... .||
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~-~gG   56 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF-SGG   56 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS-SCT
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC-CCC
Confidence            48999999999999999999999999999999853 444

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=6.8e-13  Score=103.69  Aligned_cols=40  Identities=35%  Similarity=0.699  Sum_probs=36.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ..+|+|||||++||++|+.|+++|++|+|||+.+ ..||.+
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~-~~GG~l   82 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS-EIGGQF   82 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS-SSCTTH
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccC-ccCceE
Confidence            3789999999999999999999999999999985 477754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.35  E-value=5.3e-12  Score=92.10  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=69.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+... .        .+              ..++                
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~-l--------l~--------------~~d~----------------   63 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-F--------LP--------------AVDE----------------   63 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-S--------ST--------------TSCH----------------
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc-c--------CC--------------cccc----------------
Confidence            5899999999999999999999999999998752 1        00              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc---cceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV---KLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~---~~~~~ad~  247 (253)
                                                   .+.+.++...++. |++++++++|++++.+++++.++..+   +.++.||.
T Consensus        64 -----------------------------ei~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~  113 (119)
T d3lada2          64 -----------------------------QVAKEAQKILTKQ-GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDK  113 (119)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESE
T ss_pred             -----------------------------hhHHHHHHHHHhc-CceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCE
Confidence                                         1123333333332 69999999999999988887776432   35799999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       114 vlvAvG  119 (119)
T d3lada2         114 LIVAVG  119 (119)
T ss_dssp             EEECSC
T ss_pred             EEEeeC
Confidence            999998

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=2.6e-13  Score=113.35  Aligned_cols=33  Identities=30%  Similarity=0.561  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++||++|+.|+++|++|+||||.+
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            699999999999999999999999999999974

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=4.3e-12  Score=102.50  Aligned_cols=119  Identities=14%  Similarity=0.121  Sum_probs=74.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .|||||||||++|+.+|+++++.|.+++|||++....|...-....   +   ..+...+          ..+.      
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~---g---g~~kg~l----------~rei------   59 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKP---P---FPPGSLL----------ERAY------   59 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCS---C---CCTTCHH----------HHHC------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCcc---c---cCCCcce----------eeee------
Confidence            3899999999999999999999999999999874333332211100   0   0000000          0000      


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVV  248 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~V  248 (253)
                                +       ..+.. .+    .++.-++..+...++++|+.. .|.++..+++.+. |.+.++..+.|+.|
T Consensus        60 ----------d-------~kG~a-v~----a~raQ~k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaV  116 (230)
T d2cula1          60 ----------D-------PKDER-VW----AFHARAKYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKV  116 (230)
T ss_dssp             ----------C-------TTCCC-HH----HHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEE
T ss_pred             ----------e-------ccchh-hh----hHHHHHHHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEE
Confidence                      0       00000 00    123334445555567888855 6888887777654 66778889999999


Q ss_pred             EEcCC
Q 047483          249 VIAHN  253 (253)
Q Consensus       249 V~AtG  253 (253)
                      |+|||
T Consensus       117 ILtTG  121 (230)
T d2cula1         117 VLAVG  121 (230)
T ss_dssp             EECCT
T ss_pred             EEccC
Confidence            99998

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.7e-13  Score=110.06  Aligned_cols=71  Identities=28%  Similarity=0.379  Sum_probs=57.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceecc-CchhHHHHHHhh
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTV-NDSRFHELVDGW  163 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (253)
                      +.+|+|||||++||+||+.|+++|++|+|||+++ .+||++.+....  +..+|.|.+++.. ....+.++++++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~-r~GGr~~t~~~~--g~~~d~G~~~i~~~~~~~~~~l~~~l   76 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD-RVGGRVATFRKG--NYVADLGAMVVTGLGGNPMAVVSKQV   76 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS-SSBTTCCEEEET--TEEEESSCCEECCSBTCHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC-CCcccEEEEEeC--CEEEECCCEEECCCCCcHHHHHHHHc
Confidence            4789999999999999999999999999999985 699998876554  6778999888753 334455666553

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.32  E-value=1.3e-11  Score=91.77  Aligned_cols=97  Identities=20%  Similarity=0.209  Sum_probs=70.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL  168 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+. .-.+.                  +   ++              
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~-~l~~~------------------~---~~--------------   77 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR-VLERV------------------T---AP--------------   77 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-TTTTT------------------S---CH--------------
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc-ccccc------------------c---ch--------------
Confidence            346899999999999999999999999999999753 10000                  0   00              


Q ss_pred             cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe--E-EEEeCccceeec
Q 047483          169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM--W-HLSENVKLRGQF  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~--~-~v~~~~~~~~~a  245 (253)
                                                     .+..+++...++. |+++++|+.|+.|+...+.  + .+.++++..+.|
T Consensus        78 -------------------------------~~~~~~~~~~~~~-GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~  125 (133)
T d1q1ra2          78 -------------------------------PVSAFYEHLHREA-GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA  125 (133)
T ss_dssp             -------------------------------HHHHHHHHHHHHH-TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEEC
T ss_pred             -------------------------------hhhhhhhhccccc-ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEEC
Confidence                                           0123333333332 6999999999999876432  3 355788889999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       126 D~vi~a~G  133 (133)
T d1q1ra2         126 DLVIAGIG  133 (133)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeeC
Confidence            99999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.30  E-value=1.4e-11  Score=90.14  Aligned_cols=92  Identities=22%  Similarity=0.283  Sum_probs=67.1

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV  169 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ..+++|||||++|+.+|..|+++|.+|+|+|+.+. .-.+                                        
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~-~l~~----------------------------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR-LMSR----------------------------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-TTTT----------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc-cccc----------------------------------------
Confidence            46899999999999999999999999999998752 1000                                        


Q ss_pred             ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483          170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV  249 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV  249 (253)
                                           ..+     ..+.+++....++. |+++++++.|+++..  +.  +.++++.++.||.||
T Consensus        69 ---------------------~~~-----~~~~~~~~~~l~~~-GV~i~~~~~v~~~~~--~~--v~l~dg~~i~~D~vi  117 (121)
T d1d7ya2          69 ---------------------AAP-----ATLADFVARYHAAQ-GVDLRFERSVTGSVD--GV--VLLDDGTRIAADMVV  117 (121)
T ss_dssp             ---------------------TSC-----HHHHHHHHHHHHTT-TCEEEESCCEEEEET--TE--EEETTSCEEECSEEE
T ss_pred             ---------------------cCC-----HHHHHHHHHHHHHC-CcEEEeCCEEEEEeC--CE--EEECCCCEEECCEEE
Confidence                                 000     01133333333333 699999999988753  33  456788899999999


Q ss_pred             EcCC
Q 047483          250 IAHN  253 (253)
Q Consensus       250 ~AtG  253 (253)
                      +|+|
T Consensus       118 ~a~G  121 (121)
T d1d7ya2         118 VGIG  121 (121)
T ss_dssp             ECSC
T ss_pred             EeeC
Confidence            9998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-11  Score=91.20  Aligned_cols=95  Identities=17%  Similarity=0.210  Sum_probs=71.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhH----cCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhc
Q 047483           91 PHVGIIGGGMAGLACALSLDK----RGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLER  166 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~----~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      .+++|||||++|+.+|..|++    .|.+|+++|+++. .-.+.                  +                 
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~-~l~~~------------------~-----------------   81 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG-NMGKI------------------L-----------------   81 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS-TTTTT------------------S-----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc-CCccc------------------C-----------------
Confidence            579999999999999999964    4899999998752 10000                  0                 


Q ss_pred             cccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483          167 GLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD  246 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad  246 (253)
                                                +     ..+..++...+++. |+++++|+.|++++.+++...++++++..+.||
T Consensus        82 --------------------------~-----~~~~~~~~~~l~~~-GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD  129 (137)
T d1m6ia2          82 --------------------------P-----EYLSNWTMEKVRRE-GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETD  129 (137)
T ss_dssp             --------------------------C-----HHHHHHHHHHHHTT-TCEEECSCCEEEEEEETTEEEEEETTSCEEEES
T ss_pred             --------------------------C-----HHHHHHHHHHHHhC-CcEEEeCCEEEEEEecCCEEEEEECCCCEEECC
Confidence                                      0     01123333333332 699999999999999999988999998899999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||.|+|
T Consensus       130 ~Vi~A~G  136 (137)
T d1m6ia2         130 HIVAAVG  136 (137)
T ss_dssp             EEEECCC
T ss_pred             EEEEeec
Confidence            9999998

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.28  E-value=3.9e-11  Score=101.81  Aligned_cols=33  Identities=30%  Similarity=0.528  Sum_probs=32.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||+|++||++|+.|+++|++|+||||..
T Consensus         6 ~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            899999999999999999999999999999975

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.27  E-value=8.8e-12  Score=90.28  Aligned_cols=33  Identities=27%  Similarity=0.595  Sum_probs=31.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+++|||||+.|+.+|..|++.|.+|+|+|+.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            589999999999999999999999999999975

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.24  E-value=5.8e-11  Score=86.08  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=66.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||++|+.+|..|.+.|.+|+|+|+++. ....            +          ++                
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~-il~~------------~----------d~----------------   63 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE-ILSG------------F----------EK----------------   63 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SSTT------------S----------CH----------------
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce-eccc------------c----------cc----------------
Confidence            5899999999999999999999999999998753 1000            0          00                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC-c--cceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN-V--KLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~-~--~~~~~ad~  247 (253)
                                                   .+.+.+....++. |+++++++.|++++.+++++.+... +  ..++.||.
T Consensus        64 -----------------------------~~~~~l~~~l~~~-GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~  113 (117)
T d1ebda2          64 -----------------------------QMAAIIKKRLKKK-GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADY  113 (117)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESE
T ss_pred             -----------------------------hhHHHHHHHHHhc-CCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEE
Confidence                                         1122223322332 6999999999999999888776643 2  24689999


Q ss_pred             EEE
Q 047483          248 VVI  250 (253)
Q Consensus       248 VV~  250 (253)
                      ||+
T Consensus       114 Vlv  116 (117)
T d1ebda2         114 VLV  116 (117)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.24  E-value=5.2e-11  Score=87.44  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=69.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+-+|..+++.|.+|+|+|+.+. .-..                      .++                
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~-il~~----------------------~d~----------------   67 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LMQG----------------------ADR----------------   67 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS-SSTT----------------------SCH----------------
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc-cccc----------------------chh----------------
Confidence            5899999999999999999999999999999752 1000                      000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc--c--ceeecC
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV--K--LRGQFD  246 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~--~--~~~~ad  246 (253)
                                                   .+...+....++. |++++++++|++++.++++..+...+  +  .+++||
T Consensus        68 -----------------------------~~~~~l~~~l~~~-gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D  117 (125)
T d1ojta2          68 -----------------------------DLVKVWQKQNEYR-FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYD  117 (125)
T ss_dssp             -----------------------------HHHHHHHHHHGGG-EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEES
T ss_pred             -----------------------------hHHHHHHHHHHHc-CcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcC
Confidence                                         1123333333332 69999999999999988887665332  2  479999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .|++|+|
T Consensus       118 ~vl~A~G  124 (125)
T d1ojta2         118 AVLVAAG  124 (125)
T ss_dssp             CEEECCC
T ss_pred             EEEEecC
Confidence            9999998

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=3.7e-11  Score=101.60  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~  123 (253)
                      +||+|||+|++||++|+.++++  |.+|+|+||..
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            8999999999999999999986  78999999975

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.21  E-value=1.6e-11  Score=102.03  Aligned_cols=41  Identities=27%  Similarity=0.499  Sum_probs=35.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCCCcc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg~~~  131 (253)
                      ++||+|||||++||++|+.|+++ |++|+|||+++ ..||.+.
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~-~~GG~~~   74 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV-SPGGGAW   74 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS-SCCTTTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC-CCCCcee
Confidence            38999999999999999999874 99999999985 4777653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.21  E-value=5e-11  Score=86.39  Aligned_cols=94  Identities=17%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      .+++|||||++|+.+|..|.+   .|.+|+++|+.+. .        .+              ..++             
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~-i--------l~--------------~~d~-------------   62 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM-I--------LR--------------GFDS-------------   62 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS-S--------ST--------------TSCH-------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccc-c--------cc--------------cccc-------------
Confidence            589999999999999987655   4899999998742 1        00              0000             


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeecC
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFD  246 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad  246 (253)
                                                      .+..+++...++. |+++++++.|++|++++++ ..+..+++..+.||
T Consensus        63 --------------------------------~~~~~~~~~l~~~-GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D  109 (117)
T d1feca2          63 --------------------------------ELRKQLTEQLRAN-GINVRTHENPAKVTKNADGTRHVVFESGAEADYD  109 (117)
T ss_dssp             --------------------------------HHHHHHHHHHHHT-TEEEEETCCEEEEEECTTSCEEEEETTSCEEEES
T ss_pred             --------------------------------hhhHHHHHHHhhC-cEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcC
Confidence                                            1133333333333 6999999999999877544 45778888999999


Q ss_pred             EEEEcCC
Q 047483          247 VVVIAHN  253 (253)
Q Consensus       247 ~VV~AtG  253 (253)
                      .||+|+|
T Consensus       110 ~Vi~a~G  116 (117)
T d1feca2         110 VVMLAIG  116 (117)
T ss_dssp             EEEECSC
T ss_pred             EEEEecC
Confidence            9999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.21  E-value=1.3e-10  Score=84.32  Aligned_cols=92  Identities=16%  Similarity=0.285  Sum_probs=67.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+. .        .+              ..++                
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~-i--------l~--------------~~d~----------------   63 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR-I--------LR--------------KFDE----------------   63 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS-S--------CT--------------TSCH----------------
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcc-c--------cc--------------cccH----------------
Confidence            5899999999999999999999999999998752 1        00              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC-CeEEEEeCccceee-cCEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN-GMWHLSENVKLRGQ-FDVV  248 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~-~~~~v~~~~~~~~~-ad~V  248 (253)
                                                   .+.+.+....++. |+++++++.|++++..+ +.+.++++++..+. +|.|
T Consensus        64 -----------------------------~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~V  113 (117)
T d1onfa2          64 -----------------------------SVINVLENDMKKN-NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHV  113 (117)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEE
T ss_pred             -----------------------------HHHHHHHHHHHhC-CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEE
Confidence                                         1133333323332 79999999999998764 45778888877774 6999


Q ss_pred             EEc
Q 047483          249 VIA  251 (253)
Q Consensus       249 V~A  251 (253)
                      |+|
T Consensus       114 i~A  116 (117)
T d1onfa2         114 IYC  116 (117)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.4e-11  Score=86.56  Aligned_cols=94  Identities=15%  Similarity=0.134  Sum_probs=68.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+.+|..|++.|.+|+|+|+++. .        .+              ..++                
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-~--------l~--------------~~d~----------------   63 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK-V--------LR--------------SFDS----------------   63 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-S--------CT--------------TSCH----------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc-c--------cc--------------chhh----------------
Confidence            5899999999999999999999999999999752 1        00              0000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe---Cc------cc
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE---NV------KL  241 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~---~~------~~  241 (253)
                                                   .+.+++....++ .|+++++|++|++|+++++++.+..   ..      ..
T Consensus        64 -----------------------------~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~  113 (125)
T d3grsa2          64 -----------------------------MISTNCTEELEN-AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTM  113 (125)
T ss_dssp             -----------------------------HHHHHHHHHHHH-TTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEE
T ss_pred             -----------------------------HHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccc
Confidence                                         112333333333 2799999999999999988876542   11      13


Q ss_pred             eeecCEEEEcCC
Q 047483          242 RGQFDVVVIAHN  253 (253)
Q Consensus       242 ~~~ad~VV~AtG  253 (253)
                      .+.+|.||+|+|
T Consensus       114 ~~~~D~vl~a~G  125 (125)
T d3grsa2         114 IPDVDCLLWAIG  125 (125)
T ss_dssp             EEEESEEEECSC
T ss_pred             cccCCEEEEEeC
Confidence            578999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.20  E-value=5.9e-11  Score=86.87  Aligned_cols=92  Identities=21%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||+.|+.+|..|++.|.+|+++|+.+. .-.+                                         
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~-~l~~-----------------------------------------   68 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR-PLGV-----------------------------------------   68 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-TTTT-----------------------------------------
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCc-cccc-----------------------------------------
Confidence            5899999999999999999999999999999742 1000                                         


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI  250 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~  250 (253)
                                          ...     +.+..+++...++. |+++++++.|++++.++....+ .+++..+.||.||+
T Consensus        69 --------------------~~d-----~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v-~~dg~~i~~D~vi~  121 (123)
T d1nhpa2          69 --------------------YLD-----KEFTDVLTEEMEAN-NITIATGETVERYEGDGRVQKV-VTDKNAYDADLVVV  121 (123)
T ss_dssp             --------------------TCC-----HHHHHHHHHHHHTT-TEEEEESCCEEEEECSSBCCEE-EESSCEEECSEEEE
T ss_pred             --------------------ccc-----hhhHHHHHHHhhcC-CeEEEeCceEEEEEcCCCEEEE-EeCCCEEECCEEEE
Confidence                                000     01133333333333 6999999999999865433333 55678999999998


Q ss_pred             c
Q 047483          251 A  251 (253)
Q Consensus       251 A  251 (253)
                      |
T Consensus       122 a  122 (123)
T d1nhpa2         122 A  122 (123)
T ss_dssp             C
T ss_pred             E
Confidence            7

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.17  E-value=1.2e-10  Score=84.68  Aligned_cols=94  Identities=13%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+|+|||||+.|+.+|..|++.|.+|+++|+.+. ...          .            .++                
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~-~l~----------~------------~d~----------------   63 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP-LKL----------I------------KDN----------------   63 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT-TTT----------C------------CSH----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccch-hhc----------c------------ccc----------------
Confidence            5899999999999999999999999999998742 100          0            000                


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE-E----EEeCccceeec
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW-H----LSENVKLRGQF  245 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~-~----v~~~~~~~~~a  245 (253)
                                                   .+.+++....++. +++++++++|++|+.++++. .    ....++..+.|
T Consensus        64 -----------------------------~~~~~~~~~l~~~-gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~  113 (121)
T d1mo9a2          64 -----------------------------ETRAYVLDRMKEQ-GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET  113 (121)
T ss_dssp             -----------------------------HHHHHHHHHHHHT-TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEEC
T ss_pred             -----------------------------chhhhhhhhhhcc-ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEc
Confidence                                         0133333333333 69999999999999876542 1    12345567999


Q ss_pred             CEEEEcCC
Q 047483          246 DVVVIAHN  253 (253)
Q Consensus       246 d~VV~AtG  253 (253)
                      |.||+|+|
T Consensus       114 D~Vi~a~G  121 (121)
T d1mo9a2         114 DFVFLGLG  121 (121)
T ss_dssp             SCEEECCC
T ss_pred             CEEEEEEC
Confidence            99999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.3e-10  Score=84.94  Aligned_cols=33  Identities=33%  Similarity=0.513  Sum_probs=31.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+++|||||+.|+.+|..|++.|.+|+|+|+++
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            589999999999999999999999999999875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.6e-11  Score=103.35  Aligned_cols=70  Identities=27%  Similarity=0.367  Sum_probs=56.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccc-cccccceeccCchhHHHHHHhh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLI-FDHAAQFFTVNDSRFHELVDGW  163 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +||+|||||++||++|+.|+++|++|+|||+++ .+||++.+....  +.. ++.|++++....+.+.+++..+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~-~iGG~~~t~~~~--g~~~~~~G~h~f~t~~~~v~~~~~~~   72 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN-HIGGNAYTEDCE--GIQIHKYGAHIFHTNDKYIWDYVNDL   72 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS-SSSGGGCEEEET--TEEEETTSCCCEEESCHHHHHHHHTT
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC-CcccceEEeCcC--CEEEeecCcEEEEecchHHHHHhhcc
Confidence            699999999999999999999999999999986 599988765332  433 4678888877777666666553

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.14  E-value=1.4e-10  Score=84.89  Aligned_cols=92  Identities=18%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .+++|||||+.|+.+|..|.+.|.+|+|+|+++. .        .                                   
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~-~--------l-----------------------------------   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE-I--------V-----------------------------------   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS-S--------S-----------------------------------
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc-c--------C-----------------------------------
Confidence            5899999999999999999999999999998752 1        0                                   


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEE--eCcc---ceee
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLS--ENVK---LRGQ  244 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~--~~~~---~~~~  244 (253)
                                        +...      +.+.. +.+.|.++  |++|++|+.|++|+..++++++.  ..++   ..++
T Consensus        62 ------------------~~~d------~~~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~  115 (123)
T d1dxla2          62 ------------------PTMD------AEIRKQFQRSLEKQ--GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE  115 (123)
T ss_dssp             ------------------TTSC------HHHHHHHHHHHHHS--SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEE
T ss_pred             ------------------chhh------hcchhhhhhhhhcc--cceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEE
Confidence                              0000      01122 23333333  69999999999999887776554  2222   3589


Q ss_pred             cCEEEEcC
Q 047483          245 FDVVVIAH  252 (253)
Q Consensus       245 ad~VV~At  252 (253)
                      ||.|++|.
T Consensus       116 ~D~vLvAA  123 (123)
T d1dxla2         116 ADVVLVSA  123 (123)
T ss_dssp             ESEEECCC
T ss_pred             cCEEEEcC
Confidence            99999884

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.14  E-value=4.4e-11  Score=87.44  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=31.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+++|||||++|+.+|..|++.|.+|+|+|+++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            589999999999999999999999999999874

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.12  E-value=1.2e-10  Score=94.28  Aligned_cols=37  Identities=27%  Similarity=0.509  Sum_probs=33.5

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      |....+|+|||||++||++|+.|+++|++|+||||+.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3445799999999999999999999999999999974

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.11  E-value=2e-10  Score=83.16  Aligned_cols=92  Identities=16%  Similarity=0.175  Sum_probs=66.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483           91 PHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG  167 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      .+++|||||+.|+.+|..|.+   +|.+|+|+|+.+. .        .+              ..++             
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~-i--------L~--------------~~d~-------------   64 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM-I--------LR--------------GFDH-------------   64 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS-S--------ST--------------TSCH-------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch-h--------hc--------------ccch-------------
Confidence            589999999999999977665   4678999998742 1        00              0000             


Q ss_pred             ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCccceeecC
Q 047483          168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENVKLRGQFD  246 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~~~ad  246 (253)
                                                      .+.+++....++. |++++++++|++++..++ ...++++++.++.||
T Consensus        65 --------------------------------~~~~~l~~~l~~~-GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D  111 (117)
T d1aoga2          65 --------------------------------TLREELTKQLTAN-GIQILTKENPAKVELNADGSKSVTFESGKKMDFD  111 (117)
T ss_dssp             --------------------------------HHHHHHHHHHHHT-TCEEEESCCEEEEEECTTSCEEEEETTSCEEEES
T ss_pred             --------------------------------HHHHHHHHHHHhc-CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeC
Confidence                                            1233333333332 799999999999987644 577888888899999


Q ss_pred             EEEEc
Q 047483          247 VVVIA  251 (253)
Q Consensus       247 ~VV~A  251 (253)
                      .||+|
T Consensus       112 ~Vi~A  116 (117)
T d1aoga2         112 LVMMA  116 (117)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99987

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.11  E-value=6.1e-11  Score=100.49  Aligned_cols=71  Identities=15%  Similarity=0.329  Sum_probs=56.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccC-CCccccccccceeccCchhHHHHHHh
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIG-PQPLIFDHAAQFFTVNDSRFHELVDG  162 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      .+|+|||||++||++|+.|+++|++|+|||+++ .+||++.+.... .....++.|++.+....+.+.+.+..
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~-~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~~~   74 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD-HIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNK   74 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS-SSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHT
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC-CCcCeeeEEEecCCCceEEecCceeecCccHHHHHHHHH
Confidence            689999999999999999999999999999986 599988665432 23456788888887666666555554

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=9.6e-10  Score=95.37  Aligned_cols=41  Identities=27%  Similarity=0.585  Sum_probs=35.5

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhH------cCCeEEEEcCCCCCCCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDK------RGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~------~g~~v~~~e~~~~~~gg~  129 (253)
                      ..++|||||||||+|+++|+.|++      +|++|+||||+.. +|..
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~-pG~k   76 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH-IGAH   76 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS-TTTT
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC-CCCC
Confidence            345999999999999999999998      7999999999854 5544

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.9e-10  Score=88.94  Aligned_cols=105  Identities=17%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR  170 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      .||+|||||++||++|+.|++.|++|+|+|+..  .||.+.....-.                                 
T Consensus         6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~--~~g~~~~~~~i~---------------------------------   50 (190)
T d1trba1           6 SKLLILGSGPAGYTAAVYAARANLQPVLITGME--KGGQLTTTTEVE---------------------------------   50 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS--TTGGGGGCSBCC---------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEEeec--ccccccccchhh---------------------------------
Confidence            699999999999999999999999999999864  344321100000                                 


Q ss_pred             cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHh---hcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCE
Q 047483          171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLA---QTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDV  247 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~  247 (253)
                                   .+..++...       ....+.+.+..   +. ++.+.+. .|+.+...++.+.++.. ...+.++.
T Consensus        51 -------------~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~-~V~~~~~~~~~~~v~~~-~~~~~~~~  107 (190)
T d1trba1          51 -------------NWPGDPNDL-------TGPLLMERMHEHATKF-ETEIIFD-HINKVDLQNRPFRLNGD-NGEYTCDA  107 (190)
T ss_dssp             -------------CSTTCCSSC-------BHHHHHHHHHHHHHHT-TCEEECC-CEEEEECSSSSEEEEES-SCEEEEEE
T ss_pred             -------------hhhcccccc-------chHHHHHHHHHHHHhc-CcEEecc-eeEEEecCCCcEEEEEe-eeeEeeee
Confidence                         000000000       11223222222   22 4677655 68888888888888654 46899999


Q ss_pred             EEEcCC
Q 047483          248 VVIAHN  253 (253)
Q Consensus       248 VV~AtG  253 (253)
                      ||+|+|
T Consensus       108 viva~G  113 (190)
T d1trba1         108 LIIATG  113 (190)
T ss_dssp             EEECCC
T ss_pred             eeeecc
Confidence            999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.8e-10  Score=98.01  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ++||+|||+|++||++|+.++++|.+|+|+||...
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~   41 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            48999999999999999999999999999999753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=2.9e-10  Score=89.23  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            799999999999999999999999999999864

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.09  E-value=3.4e-10  Score=96.54  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=31.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhH----cCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDK----RGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~----~g~~v~~~e~~~~  124 (253)
                      +||+|||+|++||++|+.|++    +|++|+|+||+..
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            899999999999999999975    6999999999754

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=2.8e-10  Score=95.54  Aligned_cols=37  Identities=38%  Similarity=0.495  Sum_probs=32.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG  128 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg  128 (253)
                      ++||+|||+|++||++|+.+++.| +|+||||... .||
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~-~gG   43 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPV-TEG   43 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCT-TC-
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCC-CCC
Confidence            489999999999999999999888 9999999853 444

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.96  E-value=2.3e-09  Score=91.97  Aligned_cols=32  Identities=28%  Similarity=0.557  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +||||||+|++|+.+|++|+++|++|+|||++
T Consensus         8 ~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           8 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            89999999999999999999999999999986

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=1.8e-09  Score=78.57  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+++|||||+.|+.+|..|++.|.+|+|++++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999999964

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.93  E-value=2.5e-09  Score=91.59  Aligned_cols=33  Identities=27%  Similarity=0.491  Sum_probs=31.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||||||+|++|+.+|++|+++|++|+|||++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            699999999999999999999999999999963

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.3e-10  Score=88.85  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|++|+.++..  |+++++.++.+|.||+|+|
T Consensus        97 gI~~~~g~~V~~id~~~~~--V~l~dG~~i~~d~lViAtG  134 (213)
T d1m6ia1          97 GVAVLTGKKVVQLDVRDNM--VKLNDGSQITYEKCLIATG  134 (213)
T ss_dssp             EEEEEETCCEEEEEGGGTE--EEETTSCEEEEEEEEECCC
T ss_pred             CeEEEeCCEEEEeeccCce--eeeccceeeccceEEEeee
Confidence            6999999999999877665  4567788999999999998

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.87  E-value=9.6e-10  Score=87.46  Aligned_cols=41  Identities=34%  Similarity=0.592  Sum_probs=36.8

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ++|||+|||||++|+++|+.+++.|.+|+|+|++. ..||.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~-~~GG~~   42 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG-ALGGTC   42 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-SSCCSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC-CCCCee
Confidence            35999999999999999999999999999999975 477765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=3.3e-10  Score=90.79  Aligned_cols=41  Identities=32%  Similarity=0.529  Sum_probs=36.5

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ++|||+|||||++|+++|..|++.|++|+|||+.. ..||.+
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~-~~GG~~   44 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG-KLGGTC   44 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SSSHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC-CcceEe
Confidence            45999999999999999999999999999999875 367754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=6.7e-09  Score=80.07  Aligned_cols=37  Identities=30%  Similarity=0.595  Sum_probs=33.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|+.+++.|++|+|+|++   .||.+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~---~gg~~   38 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER---FGGQI   38 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS---TTGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe---cCCcc
Confidence            79999999999999999999999999999974   45544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.82  E-value=1e-08  Score=80.32  Aligned_cols=40  Identities=15%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEe-Cc--cceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSE-NV--KLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~-~~--~~~~~ad~VV~AtG  253 (253)
                      ++++++++.|++|+.+++.+.+.. .+  ...+.+|.||+|+|
T Consensus        70 gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G  112 (198)
T d1nhpa1          70 GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPG  112 (198)
T ss_dssp             TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             CcEEEEeeceeeEeeccccceeeecccccccccccceeeEeec
Confidence            699999999999998888777653 22  23578999999987

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.80  E-value=2.4e-09  Score=85.07  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=32.9

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +.|||+|||||++||++|+.|++.|++|+|||+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            45999999999999999999999999999999974

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=1.5e-09  Score=86.23  Aligned_cols=39  Identities=28%  Similarity=0.415  Sum_probs=35.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      .|||+|||||++|+++|..|++.|.+|+|+|++.  .||.+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~--~GGtc   40 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE--LGGTC   40 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC--TTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC--cCCeE
Confidence            3899999999999999999999999999999863  78765

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.74  E-value=2.4e-09  Score=85.97  Aligned_cols=39  Identities=28%  Similarity=0.524  Sum_probs=35.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      |||+||||||+||++|+.|++.|++|+|||+.. ..||.+
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~-~~GG~~   45 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK-TLGGVC   45 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-CSSHHH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccC-CCCCee
Confidence            899999999999999999999999999999975 366643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.71  E-value=2.7e-09  Score=85.51  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=35.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-------CeEEEEcCCCCCCCCCcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-------VKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-------~~v~~~e~~~~~~gg~~~  131 (253)
                      ++|+|||||++||+||+.|+++|       ++|+|||+.+ .+||.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~-~~GG~~~   49 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP-TPWGLVR   49 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS-SCSTHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC-CCCCeee
Confidence            68999999999999999999987       5899999986 5898663

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.68  E-value=1.1e-08  Score=82.39  Aligned_cols=43  Identities=28%  Similarity=0.438  Sum_probs=37.9

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT  132 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~  132 (253)
                      ...+|+|||||++||++|..|+++|++|+|+|+.. ..||.+..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~-~~GG~~~~   90 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE-KIGGHLNQ   90 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTTHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeecc-ccCCcccc
Confidence            34799999999999999999999999999999986 48887643

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.67  E-value=4.9e-09  Score=83.15  Aligned_cols=38  Identities=32%  Similarity=0.567  Sum_probs=34.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +||+|||||++|+++|..+++.|.+|+|+|+..  .||.+
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~--~GG~~   41 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN--LGGVC   41 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--TTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC--CCcce
Confidence            899999999999999999999999999999974  67654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.67  E-value=6e-09  Score=88.76  Aligned_cols=36  Identities=33%  Similarity=0.442  Sum_probs=33.3

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..++||||||+|++|+.+|.+|++.|++|+|||++.
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            345899999999999999999999999999999974

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.66  E-value=1e-08  Score=79.62  Aligned_cols=39  Identities=28%  Similarity=0.583  Sum_probs=34.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~~gg~~  130 (253)
                      .+|+|||||++||++|+.|+++|+ +|+||||.+ ..||.+
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~-~~gg~~   44 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQE-YVGGLS   44 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS-SCSTHH
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC-cccchh
Confidence            689999999999999999999998 499999986 466644

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=7.8e-09  Score=82.93  Aligned_cols=34  Identities=41%  Similarity=0.424  Sum_probs=32.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|||+|||||++|+++|+.+++.|++|+|+|+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4899999999999999999999999999999874

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.62  E-value=2.1e-08  Score=76.04  Aligned_cols=31  Identities=32%  Similarity=0.443  Sum_probs=28.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|||||++|+.+|..|++ +.+|+|+|+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            69999999999999999975 77999999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.60  E-value=9.4e-09  Score=81.78  Aligned_cols=39  Identities=28%  Similarity=0.542  Sum_probs=35.2

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ++|++|||||++|+.+|..+++.|.+|+|+|++.  .||.+
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~--~GG~c   43 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA--LGGTC   43 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC--TTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--CCCcc
Confidence            3899999999999999999999999999999863  67654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.60  E-value=1.2e-08  Score=78.95  Aligned_cols=38  Identities=11%  Similarity=0.054  Sum_probs=31.6

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG  253 (253)
                      +++++++++|+++..+...  +.++++.++.+|.||+|+|
T Consensus        69 ~i~~~~~~~v~~i~~~~~~--~~~~~g~~~~~D~vi~a~G  106 (183)
T d1d7ya1          69 EVEWLLGVTAQSFDPQAHT--VALSDGRTLPYGTLVLATG  106 (183)
T ss_dssp             TCEEEETCCEEEEETTTTE--EEETTSCEEECSEEEECCC
T ss_pred             CeEEEEeccccccccccce--eEecCCcEeeeeeEEEEEE
Confidence            5899999999998766554  4467788999999999998

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.5e-08  Score=80.34  Aligned_cols=39  Identities=33%  Similarity=0.541  Sum_probs=34.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      +|||+|||||++|+++|..+++.|.+|+|+|+..  .||.+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~--~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK--LGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--TTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC--CCCcc
Confidence            3899999999999999999999999999999863  56543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.57  E-value=2.7e-08  Score=79.50  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCcc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMG  131 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~  131 (253)
                      ++|+|||||++||+||..|.++  |++|+|||+.+ .+||.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~-~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL-VPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS-SSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC-CCCceeh
Confidence            4899999999999999999876  78999999986 4887543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.54  E-value=2.1e-08  Score=81.97  Aligned_cols=38  Identities=29%  Similarity=0.523  Sum_probs=34.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      ||++|||||++|+.+|..+++.|++|+|+|+..  .||.+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~--~GGtc   39 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR--LGGTC   39 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS--TTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC--CCCeE
Confidence            799999999999999999999999999999863  77765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.53  E-value=2.2e-08  Score=84.48  Aligned_cols=33  Identities=36%  Similarity=0.468  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHh-----HcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLD-----KRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~-----~~g~~v~~~e~~~  123 (253)
                      +||+||||||+||++|..|+     ++|++|+||||.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            89999999999999999997     4699999999975

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=3.4e-08  Score=82.83  Aligned_cols=40  Identities=28%  Similarity=0.468  Sum_probs=35.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCc
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~  130 (253)
                      ++||+|||||++||++|+.|+++  |++|+|||++. ..||.+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~   91 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV-APGGGS   91 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS-SCCTTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC-CCccee
Confidence            37999999999999999999975  99999999985 477765

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.50  E-value=4.5e-08  Score=74.55  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~  123 (253)
                      .+|+|||||++|+.+|..|.+.+  .+|+|+|+.+
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            58999999999999999999986  5899999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.46  E-value=5.7e-07  Score=67.49  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=29.4

Q ss_pred             CcEEEE--CcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGII--GGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~ii--G~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..++||  |||..|+.+|..|+++|.+|+|+|+..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            456666  999999999999999999999999864

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.44  E-value=9.5e-08  Score=77.96  Aligned_cols=43  Identities=28%  Similarity=0.294  Sum_probs=37.8

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~  130 (253)
                      .+.++|++|||||++|+.+|+.|++.|.+|+|+|+.. ..||.+
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~-~lGG~c   81 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP-FLGGSC   81 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SSSCHH
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC-cccccc
Confidence            3456999999999999999999999999999999975 477755

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.31  E-value=2.3e-07  Score=73.80  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .|||+|||||++|+++|..+++.|. +|+|+|+..
T Consensus         3 ~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             SBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            4999999999999999999999875 689999853

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.31  E-value=1.8e-07  Score=79.95  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=31.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ||+||||+|.+|+.+|.+|++.|.+|+|||++.
T Consensus         3 YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           3 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            899999999999999999999999999999973

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.28  E-value=2.6e-07  Score=74.07  Aligned_cols=35  Identities=20%  Similarity=0.289  Sum_probs=31.4

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|||+|||+|++|+++|+.+++.|. +|+|+|+..
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            35999999999999999999999885 699999864

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.23  E-value=2.6e-06  Score=64.87  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=30.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .||+|||||++|+.+|..|++.|.+|+|++...
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            589999999999999999999999998888764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.18  E-value=1e-07  Score=76.05  Aligned_cols=30  Identities=30%  Similarity=0.352  Sum_probs=26.6

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      +|+|||||++||++|++|+++|.+|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            699999999999999999999987666655

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.15  E-value=8.5e-07  Score=76.52  Aligned_cols=34  Identities=32%  Similarity=0.483  Sum_probs=31.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      .+|+||||||.+|+.+|.+|++.| ++|+|||++.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            389999999999999999999987 7999999985

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1.5e-05  Score=59.61  Aligned_cols=38  Identities=18%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEeCc-cceeecCEEEEcCC
Q 047483          214 MVSIVRPCWISNLQPFNGMWHLSENV-KLRGQFDVVVIAHN  253 (253)
Q Consensus       214 gv~i~~~t~V~~i~~~~~~~~v~~~~-~~~~~ad~VV~AtG  253 (253)
                      ++++..+++|..|.  ++++.+...+ ...+.||.||+|+|
T Consensus       122 gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         122 GVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             TCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCC
T ss_pred             CeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCC
Confidence            59999999999885  4555554333 34689999999998

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.13  E-value=5.6e-07  Score=77.47  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      +|+||||||.+|+.+|.+|++.+ ++|+|||++.
T Consensus        18 yD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          18 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            89999999999999999999975 8999999974

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.08  E-value=5.5e-07  Score=76.63  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++|+||||+|.+|+.+|.+|++. ++|+|||++.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            48999999999999999999987 9999999985

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=1.8e-06  Score=68.88  Aligned_cols=38  Identities=34%  Similarity=0.559  Sum_probs=32.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc---CCeEEEEcCCCCCCCCCc
Q 047483           91 PHVGIIGGGMAGLACALSLDKR---GVKSTVFDTGNHGLGGRM  130 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~---g~~v~~~e~~~~~~gg~~  130 (253)
                      .+|+||||||+|+++|+.+++.   +++|+|+|+..  .||.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~--~GG~c   42 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG--IGGAA   42 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC--TTHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC--CCcee
Confidence            4899999999999999988775   46899999863  77754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.86  E-value=0.00015  Score=53.85  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||||-+|+-+|..|.+.|. +|+++++.+
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            479999999999999999999986 588998764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.61  E-value=2.5e-05  Score=58.86  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|||+|.+|..+|..|+++|++|+|+|++.
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            579999999999999999999999999999964

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=4e-05  Score=52.01  Aligned_cols=33  Identities=42%  Similarity=0.597  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|+|.|.+|+++|..|.++|.+|+++|.+.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            579999999999999999999999999999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.50  E-value=5.6e-05  Score=57.26  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|||+|..|+.+|..|+++|++|.++++.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999999963

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.0013  Score=46.87  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|-+.+-.|..|++...+|+++-|++
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            689999999999999999999999999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.0025  Score=45.28  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|-+.+-.|..|++...+|+|+-+++
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             ceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            689999999999999999999989999998864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00022  Score=52.95  Aligned_cols=33  Identities=18%  Similarity=0.230  Sum_probs=30.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      +|+|||+|..|..+|..|++.|++|++++|...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999998753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.14  E-value=0.0061  Score=43.44  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=30.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|-+.+-.|..|++.-.+|+|+-|.+
T Consensus        35 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   67 (130)
T d1vdca2          35 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD   67 (130)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CEEEEEcCchHHHHHHHHHhCCCCcEEEEEecc
Confidence            689999999999999999999999999998864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00026  Score=54.47  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.|||+|..|...|+.++++|++|+++|+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            579999999999999999999999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.00  E-value=0.0004  Score=49.84  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            69999999999999999999999999999975

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.98  E-value=0.00029  Score=53.89  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||+|..|...|..++.+|++|+++|.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.94  E-value=0.00036  Score=53.96  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=30.2

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            59999999999999999999999999999864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.89  E-value=0.00065  Score=50.80  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+.++..+.+.|.+|++||.+.
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            689999999999999999999999999999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.83  E-value=0.00053  Score=49.12  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +++|||.|-.|..+|..|.+.|++|+++|+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            58999999999999999999999999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.79  E-value=0.00092  Score=50.66  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.+|+.+|..+...|.+|+++|.+.
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            689999999999999999999999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.67  E-value=0.00097  Score=49.50  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|.+.|..|.++|++|+++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999999863

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.65  E-value=0.0011  Score=48.64  Aligned_cols=36  Identities=19%  Similarity=0.468  Sum_probs=31.5

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +...+|.|||+|-.|.++|+.|+.+|.  +++++|.+.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            344689999999999999999999884  899999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.64  E-value=0.00064  Score=52.08  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||+|.-|.++|..|++.|.+|+++.++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            479999999999999999999999999999863

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.63  E-value=0.0016  Score=48.06  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      +.+..+|.|||+|-.|.++|+.|+..++ +++++|.+.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            3445799999999999999999999885 899999764

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.0014  Score=57.20  Aligned_cols=47  Identities=23%  Similarity=0.296  Sum_probs=41.2

Q ss_pred             CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccc
Q 047483           87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRM  134 (253)
Q Consensus        87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~  134 (253)
                      .+.++||||+|-|+.=..+|-+|++.|.+|+-+|++. --||.|++..
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~-yYGg~~aSl~   49 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRS-YYGGNWASFS   49 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCGGGCEEC
T ss_pred             CCCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCC-cCCCccccee
Confidence            3456999999999999999999999999999999996 4888777653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.0011  Score=48.65  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=29.7

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      ..+|+|||||..|+.-|..|.+.|.+|+|+..
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            36899999999999999999999999999954

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.32  E-value=0.0025  Score=46.52  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=30.8

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|.||| .|..|.++|..|.++|++|.++++..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            5899999 69999999999999999999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.30  E-value=0.002  Score=48.69  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=29.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +|.|||+|..|.++|..|++.|.+|.++.+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6999999999999999999999999999763

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0043  Score=43.01  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=33.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR  129 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~  129 (253)
                      .+|.|+|||--|-++|....+.|++|.++|.+...+...
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~   50 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMH   50 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGG
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhh
Confidence            679999999999999999999999999999876544433

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.23  E-value=0.0027  Score=44.07  Aligned_cols=32  Identities=28%  Similarity=0.205  Sum_probs=30.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|||+|-.|..-|..|.+.|.+|+++...
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            68999999999999999999999999999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.97  E-value=0.0035  Score=46.71  Aligned_cols=32  Identities=28%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             cEEEE-CcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGII-GGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~ii-G~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|| |+|-.|.++|..|++.|++|+|..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999 679999999999999999999999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.92  E-value=0.0046  Score=46.26  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=31.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|-|||-|..|..+|..|.++|++|.++++..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.90  E-value=0.0071  Score=44.70  Aligned_cols=34  Identities=24%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      ..+|.|||+|-.|.++|+.|..+|+  ++.++|.+.
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3689999999999999999999987  899999863

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.88  E-value=0.0062  Score=44.40  Aligned_cols=34  Identities=24%  Similarity=0.536  Sum_probs=30.3

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      ..+|.|||+|-.|.++|+.|+..|+  ++.++|..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            3689999999999999999999875  799999763

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.80  E-value=0.0045  Score=47.10  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|||.|..||.+|..|+ +|++|+.+|-+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            5999999999999999887 599999999864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.74  E-value=0.005  Score=45.47  Aligned_cols=33  Identities=33%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||-|..|...|.+|.++|++|.+++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            369999999999999999999999999999863

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.71  E-value=0.005  Score=45.35  Aligned_cols=32  Identities=34%  Similarity=0.425  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||-|..|...|..|.++|++|.++++..
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58999999999999999999999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.67  E-value=0.0084  Score=44.26  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -.|+|+|+|..|+.++..+...|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            469999999999999998888899999999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.67  E-value=0.0076  Score=43.56  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=29.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|.|||+|-.|.++|+.|+.+++ ++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            479999999999999999999875 899999754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.01  Score=43.79  Aligned_cols=33  Identities=27%  Similarity=0.593  Sum_probs=29.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||+|-.|.++|+.|...|+  ++.++|.+.
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            579999999999999999999976  899999763

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0085  Score=44.53  Aligned_cols=33  Identities=21%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|+|+|-++-++++.|.+.|.+|+|+.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            689999999999999999999999999999863

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.54  E-value=0.0076  Score=43.83  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=29.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||+|-.|.++|+.|..+|.  +++++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            479999999999999999999885  899999763

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.53  E-value=0.0098  Score=42.99  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=29.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||+|-.|.++|+.|..+++  ++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            479999999999999999999976  899999764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.51  E-value=0.0074  Score=45.04  Aligned_cols=32  Identities=34%  Similarity=0.657  Sum_probs=30.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|-|||-|..|...|..|.++|++|.+++++.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            69999999999999999999999999999853

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.012  Score=43.62  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      -.|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            469999999999999999998998 799999864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.46  E-value=0.01  Score=42.98  Aligned_cols=33  Identities=24%  Similarity=0.500  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .+|.|||+|-.|.++|+.|..+|+  +++++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999986  899999753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.37  E-value=0.013  Score=43.10  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|..|+.++..++..|.+|+++++++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            579999999999999998888899999999864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.30  E-value=0.01  Score=43.71  Aligned_cols=32  Identities=34%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      .|.|||.|..|.+.|..|.+.|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            59999999999999999999985  788889864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.013  Score=43.24  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=29.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|..|+.++..+...|.+|++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            569999999999999888878899999999864

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.22  E-value=0.012  Score=42.31  Aligned_cols=32  Identities=22%  Similarity=0.466  Sum_probs=29.0

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|.|||+|-.|.++|+.|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            69999999999999999999874  899999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.10  E-value=0.01  Score=40.57  Aligned_cols=32  Identities=13%  Similarity=0.034  Sum_probs=28.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|||+|.+|+-.|..|++...+|+++-+.
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            68999999999999999999988887777664

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.92  E-value=0.021  Score=41.61  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|.|||+|-.|.++|+.|...++ ++.|+|...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            589999999999999999988874 899999764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.90  E-value=0.013  Score=42.43  Aligned_cols=32  Identities=34%  Similarity=0.402  Sum_probs=29.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||.|..|...|..|.++|++|+++++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            58999999999999999999999999998754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.79  E-value=0.016  Score=41.75  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|.|||+|-.|.++|+.|+.+|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            68999999999999999998875  799999764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.022  Score=41.24  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -.|+|+|.|-.|..++..|.+.|.+|+|+|..+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            369999999999999999999999999999764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.73  E-value=0.019  Score=42.47  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..+|+|+|+|-++-++++.|.+.|. +|.|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            3689999999999999999999996 799998863

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.62  E-value=0.023  Score=42.39  Aligned_cols=33  Identities=24%  Similarity=0.230  Sum_probs=29.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      -.|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            479999999999999999988897 799999864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.61  E-value=0.019  Score=41.18  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=28.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~  123 (253)
                      +|.|||+|-.|.++|+.|+.+++  ++.++|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            68999999999999999999874  899999753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.45  E-value=0.019  Score=41.53  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=27.8

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      +|+|||| |..|.++|+.|+.+|+  +++++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6899996 9999999999999885  79999975

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.45  E-value=0.021  Score=41.31  Aligned_cols=31  Identities=35%  Similarity=0.429  Sum_probs=28.1

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCC--eEEEEcCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGV--KSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~--~v~~~e~~  122 (253)
                      +|.|||| |..|.++|+.|+.+++  ++.++|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            6999996 9999999999999984  89999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.032  Score=40.92  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=29.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -.|+|+|+|..|+.++..+...|.++++++...
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            579999999999999988888899999998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.034  Score=35.66  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=30.3

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .|.|||||--|-+++....+.|++|.+++....
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            589999999999999999999999999997643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.12  E-value=0.035  Score=41.18  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=29.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      -.|+|+|+|..|+.++..++..|. +|+++|.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            579999999999999998888896 799999863

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.039  Score=41.67  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|+|| |..|-.++.+|.++|++|+++.|+.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            57999995 9999999999999999999998864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.92  E-value=0.03  Score=44.11  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             CCcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           90 DPHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +.+|+|+|| |..|-.++..|.++|++|+++.|..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            368999997 9999999999999999999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.83  E-value=0.0013  Score=51.64  Aligned_cols=33  Identities=9%  Similarity=0.040  Sum_probs=31.1

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~  213 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRE  213 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEecc
Confidence            579999999999999999999999999999975

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.81  E-value=0.033  Score=40.36  Aligned_cols=32  Identities=22%  Similarity=0.244  Sum_probs=29.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|.|||+|-.|.+.|..|.+.|++|+++++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58999999999999999999999999999863

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.77  E-value=0.042  Score=39.99  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=29.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|..|+.++..+...|.+|++++.+.
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            469999999999999988888899999999754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.73  E-value=0.05  Score=41.11  Aligned_cols=34  Identities=32%  Similarity=0.285  Sum_probs=28.5

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .-.|+|+|+|+.|+.++..++..|. +|+++|..+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3579999999999999998887776 788888753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.68  E-value=0.056  Score=40.02  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      -.|+|+|+|..|+.++..+...|. +|++.|..+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            469999999999999999999997 577788764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.57  E-value=0.038  Score=43.80  Aligned_cols=33  Identities=24%  Similarity=0.229  Sum_probs=30.2

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|+|| |..|..++.+|.++|++|+++.|..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            57999997 9999999999999999999998753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.55  E-value=0.048  Score=39.87  Aligned_cols=33  Identities=36%  Similarity=0.437  Sum_probs=29.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ...|+|||+|-+|-.+|..|...|. +++|+-|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            3689999999999999999999997 69999885

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.47  E-value=0.045  Score=40.61  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      --|+|+|+|..|+.+...++..| .+|+++|.++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            34999999999999999999998 5899999864

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.44  E-value=0.036  Score=41.03  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|+|-++-++++.|.+.+.+|+|+.|..
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            689999999999999999999889999999863

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.42  E-value=0.045  Score=39.49  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=29.1

Q ss_pred             cEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      +|.|||+|-.|-+.|..|.+.| .+|.+++++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5899999999999999998887 8999999864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.045  Score=42.81  Aligned_cols=33  Identities=33%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            689999999999999999999997 899999753

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.082  Score=36.67  Aligned_cols=34  Identities=18%  Similarity=0.461  Sum_probs=30.6

Q ss_pred             CcEEEECcC-----------HHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGG-----------MAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G-----------~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ..|+|||+|           .++..++..|.+.|++++++.-++.
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            579999999           5789999999999999999998864

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.02  E-value=0.062  Score=38.55  Aligned_cols=30  Identities=23%  Similarity=0.515  Sum_probs=27.0

Q ss_pred             cEEEEC-cCHHHHHHHHHHhHcCC--eEEEEcC
Q 047483           92 HVGIIG-GGMAGLACALSLDKRGV--KSTVFDT  121 (253)
Q Consensus        92 ~v~iiG-~G~~G~~~a~~l~~~g~--~v~~~e~  121 (253)
                      +|.||| +|-.|.++|+.|..+++  ++.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            699999 69999999999999975  7999985

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.95  E-value=0.069  Score=40.01  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.| +|-.|..+|..|+++|.+|+++.|+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            5788888 69999999999999999999999864

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.94  E-value=0.055  Score=40.10  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=28.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .+|+|+|+|-++-++++.|.+.| +|.|+.|.
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            68999999999999999998877 99999885

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.079  Score=39.39  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-+|-++++.|.+.|. +++|+.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            689999999999999999999986 799999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.62  E-value=0.074  Score=39.16  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=26.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeE-EEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKS-TVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v-~~~e~~  122 (253)
                      ..|+|+|+|..|+.++..+...|.++ ++.+.+
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            57999999999999999888888755 555654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.53  E-value=0.055  Score=41.18  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=29.9

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..+|+|||+|-+|+-+|+.|++.+.+++++=+.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            378999999999999999999999988888765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.07  E-value=0.12  Score=38.10  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=28.8

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      -.|+|+|+|..|+.++..++..|. +|+++|.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            469999999999999999998886 788888764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.13  Score=35.94  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=30.4

Q ss_pred             CcEEEECcCH-----------HHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGGM-----------AGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G~-----------~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      ..|+|||+|+           ++..++.+|.+.|++++++.-++.
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            6799999985           788999999999999999998864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.86  E-value=0.11  Score=34.57  Aligned_cols=35  Identities=26%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             CCCCcEEEECcCHHHHHH-HHHHhHcCCeEEEEcCC
Q 047483           88 SSDPHVGIIGGGMAGLAC-ALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~-a~~l~~~g~~v~~~e~~  122 (253)
                      ....+|-+||-|=+|+++ |..|.++|++|+-.|..
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            344689999999999888 99999999999999975

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.12  Score=37.76  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=32.0

Q ss_pred             CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ....|+|||=|..|-.+|..|...|.+|+++|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            34679999999999999999999999999999864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.59  E-value=0.12  Score=37.76  Aligned_cols=36  Identities=28%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .....++|+|=|..|-.+|.+|+..|.+|+|.|.++
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            344689999999999999999999999999999875

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.12  E-value=0.15  Score=41.66  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             CCCcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           89 SDPHVGIIG-GGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        89 ~~~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +..+|+|.| .|..|..++..|.++|++|+++++.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            446899998 7999999999999999999999875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.82  E-value=0.15  Score=36.50  Aligned_cols=31  Identities=32%  Similarity=0.579  Sum_probs=26.0

Q ss_pred             cEEEEC-cCHHHHHHHHHHhHc---CCeEEEEcCC
Q 047483           92 HVGIIG-GGMAGLACALSLDKR---GVKSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG-~G~~G~~~a~~l~~~---g~~v~~~e~~  122 (253)
                      +|.||| +|-.|.++|+.|+.+   ..++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            699999 599999999998653   3689999964

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.70  E-value=0.05  Score=38.14  Aligned_cols=39  Identities=23%  Similarity=0.164  Sum_probs=27.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc-CCeEE-EEcCCCCCCCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR-GVKST-VFDTGNHGLGGR  129 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~-g~~v~-~~e~~~~~~gg~  129 (253)
                      ..|+|+|||-+|.+++.++.+. +++++ .+|-++.-.|..
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~   44 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP   44 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE
Confidence            6899999999999998877543 66654 556554333433

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.56  E-value=0.11  Score=40.52  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=29.8

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|.|| |..|-.++.+|.++|++|+.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            6999998 9999999999999999999999864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.99  E-value=0.21  Score=40.50  Aligned_cols=33  Identities=12%  Similarity=0.138  Sum_probs=30.0

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|+|| |..|-.++..|.++|++|.++-|+.
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            57999996 9999999999999999999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.88  E-value=0.28  Score=35.63  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      -.|+|+|+|..|+.++..++..|. +|+++++.+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            458899999999999999998865 788888764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.77  E-value=0.089  Score=38.07  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=20.8

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRG  113 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g  113 (253)
                      .+|.|||| |..|.++|+.|+..+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcc
Confidence            58999997 999999999998864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.67  E-value=0.26  Score=35.62  Aligned_cols=33  Identities=12%  Similarity=0.103  Sum_probs=28.1

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      -.|+|+|+ |..|+.++..+...| .+|++++.++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            46999995 999999999888888 5899999764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.27  E-value=0.33  Score=35.34  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~  123 (253)
                      --|+|+|+|..|++++..++..| .+|++++.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            35899999999999999999987 5888888764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.24  E-value=0.1  Score=37.78  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=25.1

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCC-------eEEEEcCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGV-------KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~-------~v~~~e~~  122 (253)
                      .+|+|||| |..|.++|+.|+..+.       ...++|.+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            58999996 9999999999987542       45666653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.03  E-value=0.25  Score=35.90  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=27.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      ..|+|+|+|..|+.++..+...|. .|++.++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            569999999999999988877775 677778753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.69  E-value=0.17  Score=42.94  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-.|..+|..|+..|+ +++|+|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            589999999999999999999997 899999864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=88.63  E-value=0.37  Score=38.10  Aligned_cols=31  Identities=19%  Similarity=0.169  Sum_probs=26.1

Q ss_pred             EEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++|.| +|-.|.++|..|+++|.+|++.+++.
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            44555 67789999999999999999999863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.42  E-value=0.3  Score=36.03  Aligned_cols=33  Identities=12%  Similarity=0.212  Sum_probs=25.7

Q ss_pred             CCcEEEECc-CHHHHHHHHHHhHcC-------CeEEEEcCC
Q 047483           90 DPHVGIIGG-GMAGLACALSLDKRG-------VKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~-G~~G~~~a~~l~~~g-------~~v~~~e~~  122 (253)
                      ..+|+|+|| |..|-++|+.|++..       ..+.++|..
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            368999996 999999999998753       256666653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.39  E-value=0.35  Score=36.50  Aligned_cols=33  Identities=27%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ...|+|.|-|-+|..+|..|.+.|.+|++.|.+
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            367999999999999999999999999999975

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=88.00  E-value=0.33  Score=37.22  Aligned_cols=33  Identities=27%  Similarity=0.248  Sum_probs=29.4

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      +.+|+|.|+|-+|+..|..|.+.+. ++.++|+.
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            4789999999999999999998875 78999985

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.00  E-value=0.33  Score=39.12  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=30.3

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .+|+|.| +|..|..++..|.++|++|.++++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5799999 68999999999999999999999864

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.50  E-value=0.36  Score=36.91  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=28.6

Q ss_pred             CCcEEEECcCHHHHHHHHHHhHc--------------------C-CeEEEEcCCC
Q 047483           90 DPHVGIIGGGMAGLACALSLDKR--------------------G-VKSTVFDTGN  123 (253)
Q Consensus        90 ~~~v~iiG~G~~G~~~a~~l~~~--------------------g-~~v~~~e~~~  123 (253)
                      ..+|+|||+|-+++=+|..|.+.                    | .+|.++.|+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            36899999999999999999873                    5 4799998864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.43  E-value=0.35  Score=37.77  Aligned_cols=33  Identities=15%  Similarity=0.008  Sum_probs=28.3

Q ss_pred             CcEEEECc-C--HHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-G--MAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G--~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..++|.|| |  =.|.++|..|+++|++|++.++++
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46888886 3  489999999999999999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.40  E-value=0.39  Score=36.85  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=28.4

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|| |-.|.++|..|+++|++|.++++..
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            46888987 5689999999999999999998753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.29  E-value=0.35  Score=36.75  Aligned_cols=31  Identities=35%  Similarity=0.496  Sum_probs=26.1

Q ss_pred             EEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++|-|| +-.|.++|..|+++|++|++.+++.
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~   35 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRR   35 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            555565 6789999999999999999999864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.24  E-value=0.54  Score=34.06  Aligned_cols=32  Identities=25%  Similarity=0.178  Sum_probs=27.4

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ..|+|+|| |..|+.+...+...|.+|+++...
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEEeccccccccccccccccCccccccccc
Confidence            46999996 999998888887789999998864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=87.10  E-value=0.35  Score=37.55  Aligned_cols=33  Identities=9%  Similarity=0.035  Sum_probs=27.3

Q ss_pred             CCcEEEECc-CH--HHHHHHHHHhHcCCeEEEEcCC
Q 047483           90 DPHVGIIGG-GM--AGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        90 ~~~v~iiG~-G~--~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      ...++|.|| |-  .|.++|..|+++|.+|++..++
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            356888885 43  7899999999999999998865

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.82  E-value=0.4  Score=36.88  Aligned_cols=31  Identities=23%  Similarity=0.193  Sum_probs=25.4

Q ss_pred             EEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      |+|.|| +-.|.++|..|+++|++|++++++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            345564 5689999999999999999999864

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.72  E-value=0.43  Score=36.14  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=27.2

Q ss_pred             CcEEEECcCHHHHHHHHHHh--------------------HcCC-eEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLD--------------------KRGV-KSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~--------------------~~g~-~v~~~e~~~  123 (253)
                      .+|+|||+|-+++=+|..|+                    +.|. +|.++-|..
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            68999999999999998776                    4554 688888763

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.35  E-value=0.23  Score=37.14  Aligned_cols=29  Identities=24%  Similarity=0.240  Sum_probs=24.8

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEE
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVF  119 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~  119 (253)
                      ..|+|.| .|..|..++..|.++|++|.++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~   33 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAK   33 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEE
Confidence            5799999 5999999999999999765554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.75  E-value=0.51  Score=36.62  Aligned_cols=32  Identities=34%  Similarity=0.465  Sum_probs=25.9

Q ss_pred             cEE-EECcC-HHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVG-IIGGG-MAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~-iiG~G-~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+ |.||+ =.|.++|..|+++|.+|++.+++.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            464 55654 589999999999999999999863

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.74  E-value=0.46  Score=34.47  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=27.4

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|+|.|| |..|+.+...+...|.+|+..++.+
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            45888896 9999999888878899999988753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=85.72  E-value=0.54  Score=34.69  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||.|..|-..|..|..-|.+|..+++..
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceEEEeccccccccceeeeeccccccccccccc
Confidence            579999999999999999999999999999864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.42  Score=37.04  Aligned_cols=31  Identities=29%  Similarity=0.342  Sum_probs=25.5

Q ss_pred             EEEECcCH-HHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGGGM-AGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~G~-~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++|.||+- .|...|..|+++|.+|.+.+++.
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44556554 78999999999999999999864

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.52  E-value=0.49  Score=37.46  Aligned_cols=32  Identities=19%  Similarity=0.125  Sum_probs=28.8

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .|+|.|| |..|-.++..|.++|++|..+++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5888885 9999999999999999999999864

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=0.31  Score=38.26  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=27.3

Q ss_pred             CcEEEECcCH-HHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGM-AGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~-~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .-++|.||+- .|.++|..|+++|.+|++..++.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4577777654 79999999999999999999863

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.74  E-value=0.58  Score=36.09  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=26.9

Q ss_pred             cEEEE--CcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGII--GGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~ii--G~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +++||  |++-.|.++|..|+++|++|++.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            45555  567889999999999999999999863

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.67  E-value=0.56  Score=36.28  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=27.1

Q ss_pred             CcEEEECcC---HHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGG---MAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G---~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .-++|.||+   =.|.++|..|+++|.+|++..+++
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            457788863   279999999999999999988753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.61  E-value=0.31  Score=33.61  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=25.4

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .|+|+|.|-.|..++..|.  +..|.++|.++
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~   31 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDE   31 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcch
Confidence            5899999999999999995  45678888764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=84.51  E-value=0.47  Score=36.96  Aligned_cols=31  Identities=26%  Similarity=0.425  Sum_probs=24.7

Q ss_pred             cEEEE-Cc-CHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGII-GG-GMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~ii-G~-G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +++|| || +=.|.++|..|+++|++|++.+++
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~   37 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35544 44 447889999999999999999986

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.25  E-value=0.46  Score=36.99  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=26.4

Q ss_pred             cEEEECcC-HHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGG-MAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G-~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -++|.||+ =.|.++|..|+++|++|++.+++.
T Consensus        11 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_          11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35566654 489999999999999999999864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.96  E-value=0.64  Score=36.27  Aligned_cols=32  Identities=25%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             cEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -++|.| ++=.|.++|..|+++|.+|++.+++.
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            355556 44578999999999999999999863

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=83.78  E-value=0.59  Score=35.97  Aligned_cols=33  Identities=9%  Similarity=0.154  Sum_probs=26.9

Q ss_pred             CcEEEECcCH---HHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGM---AGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~---~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .-++|.||+-   .|.++|..|+++|++|++..+++
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4577777643   67899999999999999998864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.67  E-value=0.73  Score=33.14  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=26.3

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      -.|+|+|+|..|+.++..++..|. +|++.+..
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            458999999999999998888885 56667664

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.61  E-value=0.63  Score=35.67  Aligned_cols=31  Identities=35%  Similarity=0.430  Sum_probs=25.4

Q ss_pred             EEEECcC-HHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGGG-MAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~G-~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++|.||+ =.|.++|..|+++|++|++.+++.
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4566654 478899999999999999999864

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.46  E-value=0.63  Score=37.30  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=27.9

Q ss_pred             cEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGIIG-GGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +|+|+| +|..|-.++..|.++|++|+++++-
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            588887 5999999999999999999999863

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.33  E-value=0.57  Score=36.80  Aligned_cols=31  Identities=29%  Similarity=0.088  Sum_probs=26.8

Q ss_pred             CcEEEECcC---HHHHHHHHHHhHcCCeEEEEcC
Q 047483           91 PHVGIIGGG---MAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        91 ~~v~iiG~G---~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      ..++|.||+   -.|.++|..|+++|.+|++..+
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            468888975   4899999999999999999865

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.26  E-value=0.48  Score=41.17  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~  122 (253)
                      ..|+|||+|..|..+|..|+..|+ +++|+|.+
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            589999999999999999999996 89999874

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.18  E-value=0.49  Score=33.73  Aligned_cols=30  Identities=30%  Similarity=0.342  Sum_probs=25.7

Q ss_pred             cEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +|.+||-|..|...|.+|.+.|+.| ++.+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~   31 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRT   31 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCC
Confidence            5899999999999999999999866 55554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.07  E-value=0.62  Score=36.23  Aligned_cols=32  Identities=31%  Similarity=0.464  Sum_probs=26.3

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -++|.|| +-.|.++|..|+++|.+|++.+++.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4666676 4478899999999999999999863

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=82.88  E-value=0.77  Score=35.54  Aligned_cols=31  Identities=32%  Similarity=0.508  Sum_probs=25.2

Q ss_pred             cEEEE-Cc-CHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGII-GG-GMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~ii-G~-G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      +|+|| || +=.|.++|..|+++|++|++.+++
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            46544 54 457999999999999999999986

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.85  E-value=0.64  Score=35.42  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=27.5

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|.|| |-.|.++|..|+++|++|+++++..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            5888875 5678899999999999999999864

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=82.74  E-value=0.77  Score=35.70  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=25.5

Q ss_pred             cEEEE-C-cCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGII-G-GGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~ii-G-~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      -|+|| | ++-.|.++|..|+++|.+|+|..+.
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            47777 4 4578999999999999999998664

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.57  E-value=0.8  Score=35.40  Aligned_cols=31  Identities=26%  Similarity=0.188  Sum_probs=25.6

Q ss_pred             EEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           93 VGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        93 v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ++|.|| +=.|.++|..|+++|.+|++.+++.
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455565 5589999999999999999999863

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=82.49  E-value=0.69  Score=37.48  Aligned_cols=31  Identities=23%  Similarity=0.129  Sum_probs=27.4

Q ss_pred             cEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483           92 HVGIIG-GGMAGLACALSLDKRGVKSTVFDTG  122 (253)
Q Consensus        92 ~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~  122 (253)
                      .|+|.| +|..|..++..|.++|++|+.+++.
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            466888 8999999999999999999999985

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.23  E-value=0.81  Score=36.27  Aligned_cols=31  Identities=29%  Similarity=0.342  Sum_probs=28.0

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      .+|+|.| .|..|..++..|.++|++|+.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            4789997 589999999999999999999986

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.19  E-value=0.82  Score=35.35  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=26.7

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .-++|.|| +-.|.++|..|+++|++|++.+++.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34667775 3478899999999999999999863

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.86  E-value=1  Score=34.26  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=28.0

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..++|.|| +-.|.++|..|+++|++|++.+++.
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45778886 5589999999999999999999863

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.68  E-value=0.76  Score=37.59  Aligned_cols=30  Identities=37%  Similarity=0.588  Sum_probs=27.2

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEEc
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVFD  120 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e  120 (253)
                      .+|+|.| +|..|..++..|.++|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            3688987 59999999999999999999997

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.55  E-value=1.1  Score=34.85  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=28.0

Q ss_pred             CcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .-++|.| ++=.|.++|..|+++|.+|++..++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4578888 55688999999999999999999863

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.54  E-value=0.91  Score=34.85  Aligned_cols=33  Identities=18%  Similarity=0.167  Sum_probs=27.2

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..++|.|| +-.|.++|..|+++|++|++.+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35677776 4588999999999999999999863

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.46  E-value=0.86  Score=34.93  Aligned_cols=34  Identities=35%  Similarity=0.394  Sum_probs=27.6

Q ss_pred             CcEEEECcC-HHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483           91 PHVGIIGGG-MAGLACALSLDKRGVKSTVFDTGNH  124 (253)
Q Consensus        91 ~~v~iiG~G-~~G~~~a~~l~~~g~~v~~~e~~~~  124 (253)
                      .-++|.||+ -.|.++|..|+++|.+|++.+++..
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            346666655 5899999999999999999998753

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=81.30  E-value=0.65  Score=33.85  Aligned_cols=33  Identities=36%  Similarity=0.513  Sum_probs=24.5

Q ss_pred             CcEEEECcCHHHHHHHHH--HhH-c---CCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALS--LDK-R---GVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~--l~~-~---g~~v~~~e~~~  123 (253)
                      .+|.|||||-.|.+.++.  |.+ .   +.+++++|.++
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            589999999999776542  332 2   45999999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=81.23  E-value=0.82  Score=35.50  Aligned_cols=32  Identities=16%  Similarity=0.177  Sum_probs=26.7

Q ss_pred             cEEEECcC-HHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGG-MAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G-~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -++|.||+ =.|.++|..|+++|++|++.+++.
T Consensus        10 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_          10 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46677764 479999999999999999999863

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.23  E-value=0.95  Score=35.14  Aligned_cols=32  Identities=31%  Similarity=0.411  Sum_probs=25.8

Q ss_pred             cEEEE-C-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGII-G-GGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~ii-G-~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+|| | ++-.|.++|..|+++|.+|++.+++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45555 4 46788999999999999999999863

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.18  E-value=1.3  Score=34.02  Aligned_cols=33  Identities=24%  Similarity=0.191  Sum_probs=27.0

Q ss_pred             CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .-++|.|| +-.|.++|..|+++|++|++.+++.
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34566675 4589999999999999999999863

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.79  E-value=0.82  Score=35.42  Aligned_cols=32  Identities=22%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             cEEEECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -++|.|| +-.|.++|..|+++|.+|++.+++.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           7 TALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4667776 6678999999999999999999863

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=80.69  E-value=0.89  Score=34.89  Aligned_cols=33  Identities=15%  Similarity=0.204  Sum_probs=27.1

Q ss_pred             CcEEEECcCH-HHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGM-AGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~-~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .-++|.||+- .|.+.|..|+++|++|.+..++.
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3466767654 89999999999999999999864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.46  E-value=0.86  Score=35.19  Aligned_cols=32  Identities=19%  Similarity=0.141  Sum_probs=25.7

Q ss_pred             cEE-EECc-CHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVG-IIGG-GMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~-iiG~-G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      +|+ |.|| +=.|.++|..|+++|.+|++.+++.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            455 5565 4588899999999999999999863

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.41  E-value=0.42  Score=38.22  Aligned_cols=32  Identities=28%  Similarity=0.328  Sum_probs=27.0

Q ss_pred             CcEEEECcCHHHHHHHHHHhHc----CC-------eEEEEcCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKR----GV-------KSTVFDTG  122 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~----g~-------~v~~~e~~  122 (253)
                      .+|+|.|+|-+|+.+|..|...    |+       ++.++|+.
T Consensus        26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~   68 (294)
T d1pj3a1          26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY   68 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETT
T ss_pred             cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCC
Confidence            6899999999999999987653    43       59999985

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=80.41  E-value=1  Score=34.88  Aligned_cols=33  Identities=24%  Similarity=0.224  Sum_probs=27.2

Q ss_pred             CcEEEECcC-HHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGG-MAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G-~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      .-++|.||+ =.|.++|..|+++|++|++.+++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            346777765 478899999999999999999863

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=80.30  E-value=0.9  Score=35.25  Aligned_cols=32  Identities=38%  Similarity=0.487  Sum_probs=26.0

Q ss_pred             cEEEECcC-HHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           92 HVGIIGGG-MAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        92 ~v~iiG~G-~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      -++|.||+ =.|.++|..|+++|.+|++.+++.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35566654 478899999999999999999863

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=80.16  E-value=1.4  Score=35.29  Aligned_cols=33  Identities=18%  Similarity=0.144  Sum_probs=28.2

Q ss_pred             CCCcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcC
Q 047483           89 SDPHVGIIG-GGMAGLACALSLDKRGVKSTVFDT  121 (253)
Q Consensus        89 ~~~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~  121 (253)
                      +...|+|.| +|..|..++..|.++|++|..+-|
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR   43 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence            346799998 589999999999999999987655

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=80.15  E-value=1.1  Score=33.40  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483           91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN  123 (253)
Q Consensus        91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~  123 (253)
                      ..|.|||.|-.|-.+|..|.--|.+|..+++..
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eeeeeeecccccccccccccccceeeeccCCcc
Confidence            579999999999999999988899999999853